RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764476|ref|YP_003065238.2| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
(792 letters)
>gnl|CDD|163090 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR.
Members of this protein family are the regulatory
histidine kinase PhoR associated with the phosphate ABC
transporter in most Proteobacteria. Related proteins
from Gram-positive organisms are not included in this
model. The phoR gene usually is adjacent to the response
regulator phoB gene (TIGR02154).
Length = 333
Score = 121 bits (306), Expect = 7e-28
Identities = 87/359 (24%), Positives = 148/359 (41%), Gaps = 47/359 (13%)
Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESD 495
L + V V +G+I+ NPA L W + + I N+ + E
Sbjct: 12 AQALPDAVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQ-----RITNLI-----RHPE-- 59
Query: 496 GWDLFAAIITSFDDERKSLQGTLELLS----DSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
F + + LEL S + VLE I P Q +L +VT R
Sbjct: 60 ----FVEYLAAGRFSE-----PLELPSPINSERVLEIRIAPYGEEQKLLVARDVTRLRRL 110
Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
E+ +R+ FV +VS+ELR+PLT + G+ + L + ++ +E
Sbjct: 111 EQ--------MRR------DFVANVSHELRTPLTVLRGYLETLADGPD-EDPEEWNRALE 155
Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
+ S + +LV D+L L+ +++ L + + LL+ ++ N +I
Sbjct: 156 IMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPALLDHLRDEAEALSQGKNHQITF 215
Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
DG + D L FS ++SNA+ ++ +G T+ ++ RD G FSV + G I
Sbjct: 216 EIDGGVDVL-GDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIA 274
Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
+ + RF V + G GLGL+IV+ ++ H + I S +T +
Sbjct: 275 PEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333
>gnl|CDD|163083 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072).
Length = 968
Score = 117 bits (295), Expect = 1e-26
Identities = 61/214 (28%), Positives = 121/214 (56%), Gaps = 4/214 (1%)
Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
+A+ K++F+ +S+E+R+PL I+G +LL + L S+Q QY++ I+ S LL++
Sbjct: 459 EANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL---TSQQQQYLQVINRSGESLLDI 515
Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
+NDILD + ++AG + ++ LN LL++V + ++ I++++ +L ++
Sbjct: 516 LNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQG 575
Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
D R+ Q+ ++ NA+ F+ +GS V+ + D+ +F V++ G I E+ ++F+ F
Sbjct: 576 DGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAF 635
Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
R + G GLGL+I + + G + + S
Sbjct: 636 TQADGRRRSGGTGLGLAISQRLVEAMDGELGVES 669
>gnl|CDD|162333 TIGR01386, cztS_silS_copS, heavy metal sensor kinase. Members of
this family contain a sensor histidine kinase domain
(Pfam:PF00512) and a domain found in bacterial signal
proteins (Pfam:PF00672). This group is separated
phylogenetically from related proteins with similar
architecture and contains a number of proteins
associated with heavy metal resistance efflux systems
for copper, silver, cadmium, and/or zinc.
Length = 457
Score = 103 bits (258), Expect = 2e-22
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL---VNDI 627
F +++ELR+PLTN++G T + S +Y E + ++ L L V+D+
Sbjct: 243 QFSADLAHELRTPLTNLLGQTQVAL-----SQPRTGEEYREVLESNLEELERLSRMVSDM 297
Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
L LA D G + L + L L +V + E +RI+V +G + D Q
Sbjct: 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEGEGLV---RGDPQMF 354
Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
+ S +LSNA+ + G T+ ++ R + + SV N G IP + +F+RF V
Sbjct: 355 RRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP 414
Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
A G GLGL+IV S + HGG S S D G T R P
Sbjct: 415 ARSNSGEGTGLGLAIVRSIMEAHGGRASAESPD-GKTRFILRFP 457
>gnl|CDD|185245 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 103 bits (258), Expect = 2e-22
Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
AER AL E + +A++ K+ + +S+E+R+PL ++G +LL+ + L ++Q
Sbjct: 378 AERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNT---PLTAEQMD 434
Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
+ + LL ++N++LD + +++G M L+ L LL++ +I ++
Sbjct: 435 LADTARQCTLSLLAIINNLLDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLT 494
Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
++ + D RL QI +L NA+ F+ G + L+ R F+V++ G
Sbjct: 495 LRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGG-IRLRVKRHEQQLCFTVEDTG 553
Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
I + +F F Q G GLGL+I S + GG +++ S
Sbjct: 554 CGIDIQQQQQIFTPFYQADTHSQ--GTGLGLTIASSLAKMMGGELTLFS 600
>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 101 bits (255), Expect = 5e-22
Identities = 65/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)
Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
R +TE+ +AL KA K +F+ +S+ELR+PL I+G + +L ++L ++Q +Y
Sbjct: 264 RDITERKRYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---TAEQRKY 320
Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIR 668
++ I S+ L N+ NDI+D+ ++ ++L+ I D L +++ +++ E +R
Sbjct: 321 LKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPIDFTDFLADLE-NLSGLQAEQKGLR 379
Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
+ L V D RL QI ++SNA+ F+ +G + + F V+++G
Sbjct: 380 FDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSG 439
Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
IPED +F + V ++H G+ G G+GL++ + GG ++++S
Sbjct: 440 IGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTS 491
>gnl|CDD|183148 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 100 bits (251), Expect = 1e-21
Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 25/248 (10%)
Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
R RA EK A + K++F+ +S+E+R+PL I+G LL + + Q
Sbjct: 431 RQARAEAEK------ASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP---ALNAQRDD 481
Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND-------LLNEVKQSIATKM 662
+ I+ S LL ++NDILD + ++AG + ++D LL Q ++ ++
Sbjct: 482 LRAITDSGESLLTILNDILDYSAIEAG-----GKNVSVSDEPFEPRPLLESTLQLMSGRV 536
Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
IR+ I+D + + D +R+ Q+ + +LSNA+ F+ +GS ++L++ D ++
Sbjct: 537 KGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGS-IVLRSRTDGEQWLV 595
Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
V+++G I +F FV + G+R G GLGL+I GG +S +S+ E
Sbjct: 596 EVEDSGCGIDPAKLAEIFQPFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVG 653
Query: 782 TTINCRIP 789
+ R+P
Sbjct: 654 SCFCLRLP 661
>gnl|CDD|182962 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.
Length = 475
Score = 100 bits (251), Expect = 2e-21
Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 560 EALRKADEIKN---SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISA 615
E++R E K +VQ +++EL+SPL I G +LL+ + + I
Sbjct: 244 ESMRVKLEGKAYVEQYVQTLTHELKSPLAAIRGAAELLQ----EDPPPEDRARFTGNILT 299
Query: 616 SSTILLNLVNDILDLATVDA--GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
S L L++ +L+LA ++ + L + L LL E+ ++ + I +++
Sbjct: 300 QSARLQQLIDRLLELARLEQRQELEVL--EPVALAALLEELVEAREAQAAAKGITLRLRP 357
Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
D + D L Q +L NA+DFS +G T+ L A D SV++ G IP+
Sbjct: 358 DD--ARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDY 415
Query: 734 MCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
+F RF S R+ GLGL+ V LHGG V++ + EG
Sbjct: 416 ALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEG 463
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component
regulatory system with RcsB and YojN; Provisional.
Length = 924
Score = 97.7 bits (244), Expect = 9e-21
Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 27/260 (10%)
Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
V+V+ V+ E +L E +A +A + K+ F+ VS+ELR+PL IIG DLL+T L
Sbjct: 421 VDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---EL 477
Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN---------YSTIVLNDLLNE 653
+ V ++ SS++LL +++DILD + +++ +K+ + I N L
Sbjct: 478 PKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVINHITANYLPLV 537
Query: 654 VKQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
VK+ + E + + V +G D RL Q+ S +LSNA+ F+ G ++L
Sbjct: 538 VKKRLGLYCFIEPD--VPVALNG-------DPMRLQQVISNLLSNAIKFTDTGC-IVLHV 587
Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
D F V++ G IP +F+ F QR +G GLGL+I E IN+ G
Sbjct: 588 RVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDG 647
Query: 771 HVSISSSDEGVTTI-NCRIP 789
+S+ S G+ + RIP
Sbjct: 648 DISVDSE-PGMGSQFTIRIP 666
>gnl|CDD|128669 smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine
kinase-, DNA gyrase B-, phytochrome-like ATPases.
Length = 111
Score = 96.2 bits (240), Expect = 3e-20
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
D RL Q+ S +L NA+ ++ +G + + RD +V++NG IP + + +F
Sbjct: 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEP 60
Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
F + + G GLGLSIV+ + LHGG +S+ S G TT +P
Sbjct: 61 FFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109
>gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 94.9 bits (237), Expect = 8e-20
Identities = 77/255 (30%), Positives = 120/255 (47%), Gaps = 36/255 (14%)
Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611
RA EA R IK+ F+ ++S+ELR+PL +IGFT LKT L Q Y++
Sbjct: 285 RAQ----EAAR----IKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LTPTQRDYLQ 332
Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
I S+ LL ++NDILD + ++AG + L L + L+EV +A HE + + +
Sbjct: 333 TIERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTL 392
Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNN 726
D + + + D RL QI + ++ NA+ F+ G+ I L+A + +++
Sbjct: 393 NIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDT 452
Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ------RR--GVGLGLSIVESFINLHGGHVSISSS- 777
G I E +F F Q RR G GLGL I + +N GG +S S
Sbjct: 453 GIGISERQQSQLFQAF------RQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506
Query: 778 DEGVT---TINCRIP 789
+ G T + +
Sbjct: 507 NRGSTFWFHLPLDLN 521
>gnl|CDD|183098 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional.
Length = 607
Score = 90.4 bits (225), Expect = 1e-18
Identities = 79/390 (20%), Positives = 154/390 (39%), Gaps = 68/390 (17%)
Query: 430 NTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---------SPG 477
L + + ++ +++GV G+I NPA + + + L P
Sbjct: 255 QALRETRSLNELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPN 314
Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
T + G + + T+EL + S++ + +
Sbjct: 315 TPFASPLLDTLE-----HGTE-----HVDLEISFPGRDRTIELSVST----SLLHNTHGE 360
Query: 538 TM---LTFVNVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
+ + F ++T+ R +R + E+ AL + V V++E+R+PLT I G+
Sbjct: 361 MIGALVIFSDLTERKRLQRRVARQERLAALGE-------LVAGVAHEIRNPLTAIRGYVQ 413
Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTIL-----LN-LVNDILDLATVDAGIMKLNYSTIV 646
+ + +Q+ S +L LN +++ +L+ + + S
Sbjct: 414 IWR---------QQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFS-------RPRESQWQ 457
Query: 647 ---LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
LN L+ EV Q T + + + D +L AD + L Q+ IL NA+ S
Sbjct: 458 PVSLNALVEEVLQLFQTAGVQARVDFETELDNELPPIWADPELLKQVLLNILINAVQAIS 517
Query: 704 KGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
+ ++ + +G S+++NG I ++ K +F+ F + + +G GLGL++ +
Sbjct: 518 ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTT----KAKGTGLGLALSQ 573
Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
IN HGG + + S TT +P
Sbjct: 574 RIINAHGGDIEVESEPGVGTTFTLYLPINP 603
>gnl|CDD|182496 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 87.8 bits (218), Expect = 1e-17
Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 15/256 (5%)
Query: 533 LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
+P Q +L + + ER LT E R A E ++N+ + +S++LR+PLT +
Sbjct: 624 IPEQQRLLETFTLLIANALERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLF 683
Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
G ++L T L S S ++ I LVN++LD+A + +G L + L
Sbjct: 684 GQAEIL-TLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLE 742
Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
+++ Q + + + I + + L D ++ +L NA+ ++ + +
Sbjct: 743 EVVGSALQMLEPGLSGHPINLSLPEPLTL--IHVDGPLFERVLINLLENAVKYAGAQAEI 800
Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESF 764
+ A + V +NG IP + +F++F RG + GVGLGL+I +
Sbjct: 801 GIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFA----RGNKESAIPGVGLGLAICRAI 856
Query: 765 INLHGGHVSISSSDEG 780
+ +HGG + + EG
Sbjct: 857 VEVHGGTIWAENRPEG 872
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in
two-component regulatory system with EvgA; Provisional.
Length = 1197
Score = 83.2 bits (205), Expect = 2e-16
Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)
Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS-- 614
E+N+A+ A K+ F+ +S+E+R+P+++I+GF +LL S L + Q VE IS
Sbjct: 701 ERNKAI-NATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGL-----SKEQRVEAISLA 754
Query: 615 -ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
A+ LL L+ +ILD+ +++G +L + + L+ S +I + S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814
Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGS 728
V D Q Q+ S +LSNA+ F+++G+ T L DN I ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874
Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
+ ++ + +F R+ + Q+ G GLGL I + I G +S+ S TT I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934
Query: 789 P 789
P
Sbjct: 935 P 935
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase
BaeS; Provisional.
Length = 466
Score = 71.2 bits (175), Expect = 1e-12
Identities = 54/243 (22%), Positives = 107/243 (44%), Gaps = 23/243 (9%)
Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEY 612
EKNE +R+ F+ +S+ELR+PL + G D ++ S+ S Q
Sbjct: 234 EKNEQMRRD------FMADISHELRTPLAVLRGELEAIQDGVRKFTPESVASLQ------ 281
Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
A L LV+D+ L+ D G + + + L LL + + + +++
Sbjct: 282 --AEVGTLTKLVDDLHQLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQL- 338
Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
S + D RL+Q+F+ +L N++ ++ G ++ + A + + + ++ + +
Sbjct: 339 SLPDSATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSD 398
Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
+ + +F RF + R G GLGL+I + + H G + + S G +I +P
Sbjct: 399 EQLQKLFERFY-RTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELP 457
Query: 790 SKE 792
+
Sbjct: 458 LER 460
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional.
Length = 482
Score = 69.0 bits (169), Expect = 5e-12
Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 12/210 (5%)
Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS---STILLNLVNDIL 628
F +++E+R+P+TN+I T++ S + Q + + + ++ T + +V+D+L
Sbjct: 265 FSADIAHEIRTPITNLITQTEIAL-----SQSRSQKELEDVLYSNLEELTRMAKMVSDML 319
Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
LA D + + L D + +V E + ++ G D L
Sbjct: 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRF--VGDPCQVAGDPLMLR 377
Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
+ S +LSNA+ ++ G + ++ + V+N G+ I + +F+RF
Sbjct: 378 RAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS 437
Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
QR+ G G+GL+IV+S + H G V+++S
Sbjct: 438 RQRKGEGSGIGLAIVKSIVVAHKGTVAVTS 467
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system
histidine kinase. This histidine kinase protein is
paired with an adjacent response regulator (TIGR03787)
gene. It co-occurs with a variant sortase enzyme
(TIGR03784), usually in the same gene neighborhood, in
proteobacterial species most of which are marine, and
with an LPXTG motif-containing sortase target conserved
protein (TIGR03788). Sortases and LPXTG proteins are far
more common in Gram-positive bacteria, where sortase
systems mediate attachment to the cell wall or
cross-linking of pilin structures. We give this
predicted sensor histidine kinase the gene symbol psdS,
for Proteobacterial Dedicated Sortase system Sensor
histidine kinase.
Length = 703
Score = 68.2 bits (167), Expect = 8e-12
Identities = 43/218 (19%), Positives = 94/218 (43%), Gaps = 13/218 (5%)
Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
+ +S+ELR+P+ + + L+ L +L ++ +Y+E + L ++N++ +
Sbjct: 487 NMSSRLSHELRTPVAVVRSSLENLE---LQALEQEKQKYLERAREGTERLSMILNNMSEA 543
Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
++ I L+++L+ Q + + + + + Q+
Sbjct: 544 TRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPETPLVMRGSPEL--IAQM 601
Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS----NA 746
K++ NA +FS + + + +++ + +V N G +PEDM + +F+ VS A
Sbjct: 602 LDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGA 661
Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSI--SSSDEGVT 782
+GLGL IV + H G + ++GV
Sbjct: 662 QDQPH--LGLGLYIVRLIADFHQGRIQAENRQQNDGVV 697
>gnl|CDD|182411 PRK10364, PRK10364, sensor protein ZraS; Provisional.
Length = 457
Score = 66.7 bits (163), Expect = 2e-11
Identities = 47/203 (23%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 576 VSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYISASSTILLN-LVNDILDLATV 633
V++E+R+PL++I G + + G ++ + + A LN +V+++L+L
Sbjct: 244 VAHEIRNPLSSIKGLAKYFAERAPAGG----EAHQLAQVMAKEADRLNRVVSELLELVKP 299
Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
L + LNDL+N Q ++ + I+++ ++ L AD RL Q+
Sbjct: 300 T----HLALQAVDLNDLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLN 355
Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
+ NA+ + + + A+ SV ++G I D +++F + + + + G
Sbjct: 356 LYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTT--KAE--G 411
Query: 754 VGLGLSIVESFINLHGGHVSISS 776
GLGL++V + + HGG + ++S
Sbjct: 412 TGLGLAVVHNIVEQHGGTIQVAS 434
>gnl|CDD|128670 smart00388, HisKA, His Kinase A (phosphoacceptor) domain.
Dimerisation and phosphoacceptor domain of histidine
kinases.
Length = 66
Score = 64.1 bits (157), Expect = 1e-10
Identities = 29/68 (42%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
K F+ ++S+ELR+PLT I G+ +LL+ ++ L+ +Q +Y+E I S+ LL L+ND+L
Sbjct: 2 KREFLANLSHELRTPLTAIRGYLELLEDTE---LSEEQREYLETILRSAERLLRLINDLL 58
Query: 629 DLATVDAG 636
DL+ ++AG
Sbjct: 59 DLSRIEAG 66
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional.
Length = 430
Score = 63.5 bits (155), Expect = 2e-10
Identities = 68/276 (24%), Positives = 122/276 (44%), Gaps = 46/276 (16%)
Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
TL L + LE ++P Q ++ +VT + + + + +F +V
Sbjct: 166 TLVLNNGRHLEIRVMPYTEGQLLMVARDVTQ--------------MHQLEGARRNFFANV 211
Query: 577 SYELRSPLTNIIGFTDLLKTSKL-GSLNSK-------QSQYVEYISASSTILLNLVNDIL 628
S+ELR+PLT + G+ ++++ L G+L K Q+Q +E LV +L
Sbjct: 212 SHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRME----------GLVKQLL 261
Query: 629 DLATVDAGIMKLNYSTIVLNDLLN-----EVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
L+ ++A TI LN+ ++ V + A + + I D L F +
Sbjct: 262 TLSKIEAA------PTIDLNEKVDVPMMLRVLEREAQTLSQGKHTITFEVDNSLKVF-GN 314
Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
+L S ++ NA++ + +G+ + ++ R FSV++NG I + + RF
Sbjct: 315 EDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFY 374
Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
V A Q G GLGL+IV+ ++ H + I S
Sbjct: 375 RVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE 410
>gnl|CDD|182583 PRK10604, PRK10604, sensor protein RstB; Provisional.
Length = 433
Score = 63.5 bits (155), Expect = 2e-10
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 20/221 (9%)
Query: 576 VSYELRSPLTNI---IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
+++ELR+PL + + +D L ++ +LN Q L L+ ++L A
Sbjct: 219 IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDIGQ-----------LEALIEELLTYAR 267
Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
+D +L+ S L L+ I E +R+ G G D + + ++
Sbjct: 268 LDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQGDYG--ALDMRLMERVLD 325
Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR 751
+L+NA+ ++ S V + D V+++G IP + + VF FV + R +
Sbjct: 326 NLLNNALRYA--HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRA 383
Query: 752 RG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
G GLGL+IV S GG V+ S+ G + P
Sbjct: 384 TGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVW 424
>gnl|CDD|181772 PRK09303, PRK09303, adaptive-response sensory kinase; Validated.
Length = 380
Score = 54.6 bits (132), Expect = 1e-07
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLT-----------NIIGFTDLLKTSKLGSLN 603
L ++NE L + + K+ + ++++LR+PLT I LK + + L
Sbjct: 137 LRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQ 196
Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
+ + +E I T D+L++ ++ N + L L EV + +
Sbjct: 197 DQARRQLEEIERLIT-------DLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWL 249
Query: 664 ENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFI 720
++ I+ + SD L S AD++R+ Q+ +L NA+ ++ +G T+ L R
Sbjct: 250 AKSLEIQTDIPSD--LPSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQ 307
Query: 721 FSVKNNGSSIPEDMCKSVF-NRFVSNAHRGQR----RGVGLGLSIVESFINLHGG 770
S+ + G IPE+ + +F +R R R G G+GLS+ + +H G
Sbjct: 308 VSICDTGPGIPEEEQERIFEDRV-----RLPRDEGTEGYGIGLSVCRRIVRVHYG 357
>gnl|CDD|181885 PRK09470, cpxA, two-component sensor protein; Provisional.
Length = 461
Score = 53.0 bits (128), Expect = 3e-07
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
+S+ELR+PLT + T LL + G +S+ +E I + L +++ND+L L+
Sbjct: 250 ISHELRTPLTRLQLATALL-RRRQG-----ESKELERIETEAQRLDSMINDLLVLSRNQQ 303
Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
L T N L +EV + + + + V + + L I+
Sbjct: 304 K-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPGPWPINGNPNALASALENIV 362
Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
NA+ +S V D +V ++G +PE+ + +F F V A + G
Sbjct: 363 RNALRYSHTKIEVAFSV--DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGG 420
Query: 754 VGLGLSIVESFINLHGGHVSISSSDEG 780
GLGL+IVE+ I H G V S G
Sbjct: 421 TGLGLAIVENAIQQHRGWVKAEDSPLG 447
>gnl|CDD|182702 PRK10755, PRK10755, sensor protein BasS/PmrB; Provisional.
Length = 356
Score = 51.5 bits (124), Expect = 8e-07
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
+ NA +S +GST+ +K ++++G + +V++ G I E C + FV R R
Sbjct: 256 VENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFV----RMDSRYG 311
Query: 753 GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPS 790
G+GLGLSIV LH G + + + T +P
Sbjct: 312 GIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPK 350
>gnl|CDD|181882 PRK09467, envZ, osmolarity sensor protein; Provisional.
Length = 435
Score = 49.5 bits (119), Expect = 3e-06
Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 57/237 (24%)
Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-EYISASSTILLNLVNDILDL-ATV 633
VS++LR+PLT I T+++ S++ Y+ E I DI + A +
Sbjct: 236 VSHDLRTPLTRIRLATEMM---------SEEDGYLAESI----------NKDIEECNAII 276
Query: 634 DAGI------MKLNYSTIVLNDLLNEVKQS-------IATKMHENNIRIKVISDGKLGSF 680
+ I ++ LN LL EV + I T + I + +
Sbjct: 277 EQFIDYLRTGQEMPMEMADLNALLGEVIAAESGYEREIETALQPGPIEVP-------MNP 329
Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
+A ++ + ++ NA + G+ I ++ G F V+++G IP + K +F
Sbjct: 330 IAIKR----ALANLVVNAARY---GNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382
Query: 740 NRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
F RG G GLGL+IV+ ++ H G V + +S+EG + +P
Sbjct: 383 QPFT----RGDSARGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLTT 435
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL.
NifL is a modulator of the nitrogen fixation positive
regulator protein NifA, and is therefore a negative
regulator. It binds NifA. NifA and NifL are encoded by
adjacent genes.
Length = 494
Score = 47.6 bits (113), Expect = 1e-05
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA---MDFSS 703
LN +L +V ++ I + L + + +L +F ++ NA M+
Sbjct: 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKG 407
Query: 704 KGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
+ NGD I S+ ++G IP+D+ VF F + G R+ +G+GLS+ +
Sbjct: 408 WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFT-TKGGSRKHIGMGLSVAQ 466
Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
+ HGG + + CRI
Sbjct: 467 EIVADHGGIIDLDDDYSE----GCRI 488
>gnl|CDD|182388 PRK10337, PRK10337, sensor protein QseC; Provisional.
Length = 449
Score = 47.3 bits (113), Expect = 1e-05
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-------KVISDG 675
LV+ +L L+ +D+ + + I L DLL I + I + VI G
Sbjct: 289 LVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHPVIRTG 348
Query: 676 KLGSFVADRQRLL--QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
Q LL + +L NA+ +S +GS V + N F+V++NG + +
Sbjct: 349 ---------QPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNARN----FTVRDNGPGVTPE 395
Query: 734 MCKSVFNRFVSNAHR--GQRR-GVGLGLSIVESFINLHGGHVSISSSDEG 780
+ RF +R GQ G GLGLSIV LHG +VS ++ EG
Sbjct: 396 ALARIGERF----YRPPGQEATGSGLGLSIVRRIAKLHGMNVSFGNAPEG 441
>gnl|CDD|184354 PRK13837, PRK13837, two-component VirA-like sensor kinase;
Provisional.
Length = 828
Score = 45.1 bits (107), Expect = 8e-05
Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 24/188 (12%)
Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
S+ ++Y++ I ++ +++ IL K L++L+ E+ + +
Sbjct: 483 SRAARYIDEIISAGARARLIIDQILAFGRKGERNTK----PFDLSELVTEIAPLLRVSLP 538
Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN------ 716
+ + D + + L Q+ + SNA V I +
Sbjct: 539 PG-VELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVL 597
Query: 717 -------GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
G ++ V + G+ I E + +F F + + G GLGL+ V ++ H
Sbjct: 598 SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTT----RAGGTGLGLATVHGIVSAH 653
Query: 769 GGHVSISS 776
G++ + S
Sbjct: 654 AGYIDVQS 661
>gnl|CDD|184141 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 43.1 bits (102), Expect = 3e-04
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
+L + LN L++ + + + + + I+ L + D + +L NA
Sbjct: 231 RLEGRVLNLNGLVSGMGELAERTLGDA-VTIETDLAPDLWNCRIDPTQAEVALLNVLINA 289
Query: 699 MDFSSKGSTVILK------AARDNGDF---------IFSVKNNGSSIPEDMCKSVFNRFV 743
D +G V ++ D + +V + GS +P ++ V + F
Sbjct: 290 RDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFF 349
Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
+ G+ G GLGLS+V F GG V I S TT+ P+ +
Sbjct: 350 TTKEEGK--GTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASD 396
>gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional.
Length = 348
Score = 43.1 bits (102), Expect = 3e-04
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD-FSSKG 705
++ + V Q ++ ++ +N+R+ D L D ++ Q+ I+ NA+ +G
Sbjct: 199 IHKVAERVVQLVSLEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEG 257
Query: 706 STVILK----------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
T+ L+ AAR +++NG IP + ++F VS G
Sbjct: 258 GTITLRTRTAFQLTLHGERYRLAAR------IDIEDNGPGIPPHLQDTLFYPMVS----G 307
Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
+ G GLGLSI + I+ H G + +S
Sbjct: 308 REGGTGLGLSIARNLIDQHSGKIEFTS 334
>gnl|CDD|163071 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes.
Length = 679
Score = 42.0 bits (99), Expect = 7e-04
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
+ L DLL IA+K + R +V D L ADR+RL ++ ++ NA++ +
Sbjct: 542 CVDLVDLLRRA---IASKRAQGP-RPEVSIDTDLSV-RADRERLERVLGHLVQNALEATP 596
Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
V ++ R+ G ++++G + + R + G+G+G+
Sbjct: 597 GEGRVAIRVERECGAARIEIEDSGCGMSPAFIR---ERLFKPFDTTKGAGMGIGVYECRQ 653
Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
++ GG + + S+ T +P
Sbjct: 654 YVEEIGGRIEVESTPGQGTIFTLVLP 679
>gnl|CDD|117025 pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 110
Score = 38.5 bits (90), Expect = 0.007
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
D L + +AV PDGR++ +N A L+ L G + +
Sbjct: 2 DSLPDALAVLDPDGRVRYANAAAAELFGLPPEELL-GKTLAELLPPEDA--------ARL 52
Query: 501 AAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQ-----TMLTFVNVTDSVR 550
+ + + + ELL + E + PL + ++ ++T+ R
Sbjct: 53 ERALRRALEGEEPIDFLEELLLNGEERHYELRLTPLRDPDGEVIGVLVISRDITERRR 110
>gnl|CDD|182952 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional.
Length = 542
Score = 38.0 bits (89), Expect = 0.009
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 641 NYSTIVLNDLLNEVKQSIAT-----KM---HENNIRIKVISDGKLGSFVADRQR---LLQ 689
NY + LL ++K + K+ E I + + D +L D + L+
Sbjct: 379 NYQE-EIGSLLGKIKSPVIAGFLLGKISRARELGITLIISEDSQLPD-SGDEDQVHELIT 436
Query: 690 IFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
I ++ NA++ +G + + NG V ++G I D ++F++ S
Sbjct: 437 ILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYST-- 494
Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
+G RGVGL L + +S NL GG +++ S T +IP
Sbjct: 495 KGSNRGVGLYL-VKQSVENL-GGSIAVESEPGVGTQFFVQIP 534
>gnl|CDD|185013 PRK15053, dpiB, sensor histidine kinase DpiB; Provisional.
Length = 545
Score = 36.7 bits (85), Expect = 0.023
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 683 DRQRLLQIFSKILSNAMDFSSK---GSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
D I +L NA + S + G+ ++ D GD + V + G +PE + +
Sbjct: 429 DSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKI 488
Query: 739 FNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
F + VS G+ G+GL ++ S++ GG +++ +D T + IP
Sbjct: 489 FEQGVSTRADEPGEH---GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIP 538
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 34.6 bits (80), Expect = 0.092
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 679 SFVADRQRLLQIFSKILSNA----MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
+FV ++ +++ +L NA ++F V + A + + V+++G IPE
Sbjct: 371 TFVGEKNDFMEVMGNVLDNACKYCLEF------VEISARQTDEHLHIVVEDDGPGIPESK 424
Query: 735 CKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSS 777
+ +F+R GQR G GLGLS+ + G +S S
Sbjct: 425 RELIFDR-------GQRADTLRPGQGLGLSVAREITEQYEGKISAGDS 465
>gnl|CDD|182581 PRK10600, PRK10600, nitrate/nitrite sensor protein NarX;
Provisional.
Length = 569
Score = 31.6 bits (72), Expect = 0.92
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
LLQI + LSNA+ + S V++ A++ SV++NG +PE+ +S
Sbjct: 470 LLQIAREALSNALKHAQ-ASEVVVTVAQNQNQVKLSVQDNGCGVPENAERS 519
>gnl|CDD|166599 PLN02958, PLN02958, diacylglycerol kinase/D-erythro-sphingosine
kinase.
Length = 481
Score = 31.0 bits (70), Expect = 1.2
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 673 SDGKLGSFVADR-QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
++GKL D QR L + ++L F +GS + +K + G I + G+
Sbjct: 28 AEGKLRW--TDSGQRCLTVEKEVLG----FVIEGSKIRVKTIVEKGGGICCRGSAGALAR 81
Query: 732 EDMCKSVFNRFVSNAHR 748
+D VF + R
Sbjct: 82 KDF---VFEPLSDESRR 95
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase
subunit beta/beta'; Reviewed.
Length = 2890
Score = 30.7 bits (69), Expect = 1.4
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 571 SFVQHVSYELRSPLTN-IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
Q + ++L+ P I+ L + K+ L ++VEY + L+N L
Sbjct: 247 DANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYP------MDILLNRHLA 300
Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--------GKLGSFV 681
+ VL D+L ++ ++ K+H+ ++ VI + + SF
Sbjct: 301 EPVMVG--------KEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFS 352
Query: 682 ADRQ--RLLQIFSKI 694
AD + +LL+ KI
Sbjct: 353 ADSESLKLLKQTEKI 367
>gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional.
Length = 533
Score = 30.4 bits (68), Expect = 2.0
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
T LT + + + A + R LQ W DL AT +++L +FL
Sbjct: 89 TARASLTQSTTLFKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSDFL 148
Query: 360 RS---ANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW 414
+ ++ +N++ W+ I V +S + + + +IV + +W
Sbjct: 149 TAPVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALW 208
Query: 415 MFENLTVQ 422
+ VQ
Sbjct: 209 WTRKMIVQ 216
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 30.4 bits (69), Expect = 2.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 17/74 (22%)
Query: 527 EYSIIPLPNAQTMLTFV-NVTDSVRAE-RALT---EKN-----------EALRKADEIKN 570
E ++P + + L V N+ ++ E + + EKN E LR+ DE+K
Sbjct: 916 ERIVVPFTDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQ 975
Query: 571 SFVQHVSYELRSPL 584
S VQ+ SYE + PL
Sbjct: 976 S-VQNASYEQKDPL 988
>gnl|CDD|128710 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 30.2 bits (69), Expect = 2.3
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 19/57 (33%)
Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---------SVKNNGSSIPEDM 734
L + +I+ NA D +A D I SV++NG IP ++
Sbjct: 2 LHHLVDEIVDNAAD----------EALAGYMDTIKVTIDKDNSISVEDNGRGIPVEI 48
>gnl|CDD|178775 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 29.8 bits (67), Expect = 3.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 687 LLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
L +IF +IL NA D + L+ D + SV NNG +P ++ +
Sbjct: 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQ 128
>gnl|CDD|166513 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 29.4 bits (66), Expect = 3.4
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
Y+++++A ++L +V LD V GI +LN+ + VL LL+ +
Sbjct: 198 YLDHVTAP--LVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSI 241
>gnl|CDD|132079 TIGR03034, TIGR03034, conserved hypothetical protein. Members of
this protein family have been found in several species
of gammaproteobacteria, including Yersinia pestis and Y.
pseudotuberculosis, Xylella fastidiosa, and Escherichia
coli UTI89. As many as five members can be found in a
single genome. The function is unknown.
Length = 274
Score = 29.4 bits (66), Expect = 3.6
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 693 KILSNAMDFSSKGSTVILKAARDNG-DFIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRG 749
+IL+ D+S S I+K+ +NG ++ SI + S +F +R
Sbjct: 132 QILN---DYSENSSIRIIKSVLENGINWTPGTYPSEIKQSIKTKLLSSRLPKF----NRF 184
Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
Q GLG+++ ++ ++I S
Sbjct: 185 QDSFNGLGITVH----DISATKITIKS 207
>gnl|CDD|181277 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 29.2 bits (66), Expect = 3.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 543 VNVTDSVRAERALTEKNEA-----LRKADEIKNSFVQHVS 577
+N D+ ALTEK+ A R AD + SFVQ
Sbjct: 298 LNFPDTALDLPALTEKDRADLDFVARHADLVGYSFVQSPG 337
>gnl|CDD|178674 PLN03128, PLN03128, DNA topoisomerase 2; Provisional.
Length = 1135
Score = 29.3 bits (66), Expect = 4.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 687 LLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCK 736
L +IF +IL NA D + ++ LK D SV NNG IP ++ K
Sbjct: 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHK 103
>gnl|CDD|150631 pfam09980, DUF2214, Predicted membrane protein (DUF2214). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 150
Score = 29.1 bits (66), Expect = 4.7
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 11 GKGIEICT---LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAK 53
GKG E LF K+ +F I L ++ P I IR R L K
Sbjct: 67 GKGSEFYLHNPLFHLKVTLFVLIG---LLSLYPTITFIRWRIPLRK 109
>gnl|CDD|182591 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 29.1 bits (66), Expect = 4.8
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
EKN+ RKA F+Q++ EL+ PL ++ L+ + S +Q ++ ++
Sbjct: 444 EKNQQARKA------FLQNIGDELKQPLQSLAQLAAQLRQT---SDEEQQQPELDQLAEQ 494
Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
S +L+ LV++I L ++ K L DL++EV
Sbjct: 495 SDVLVRLVDNIQLLNMLETQDWKPEQELFSLQDLIDEV 532
>gnl|CDD|185451 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.9 bits (65), Expect = 4.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 687 LLQIFSKILSNAMD-----FSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
L +IF +IL NA D T I K D + SV N+G IP
Sbjct: 58 LYKIFDEILVNAADNKARDKGGHRMTYI-KVTIDEENGEISVYNDGEGIP 106
>gnl|CDD|185654 PTZ00475, PTZ00475, RESA-like protein; Provisional.
Length = 282
Score = 28.4 bits (63), Expect = 6.7
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 541 TFVNVTDSVRAERA---LTEKNEALRKADE--IKNSFV-QHVSYELRSPLTNIIGFTDLL 594
T+ NV++ E+A + +K+ L++A+E I+NS V + S +TN F +
Sbjct: 112 TYENVSNIFLEEKANSGINKKDIYLKEANERMIRNSIVLRQCKSRFISIITNYYPFKEQ- 170
Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDI-LDLATVDAGIMKLNYSTIVLNDLLNE 653
N+ + +Y+S+S+ +L +++N+I + + I L Y I+ +LL E
Sbjct: 171 --------NNPFIKQAQYVSSSNYVLDDIINNIDYSIDNIHRAIDNLYYEHIL--NLLEE 220
Query: 654 VKQSIATKMHENNIRI 669
K I ++ N ++I
Sbjct: 221 EKNEILEEILRNILKI 236
>gnl|CDD|182537 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 28.5 bits (64), Expect = 6.9
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 30/124 (24%)
Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
NI I+V DG G +R+R+L +K S + S S + G IF+
Sbjct: 429 NICIEVTDDGA-G---LNRERIL---AKAASQGLAVSENMSD------EEVGMLIFA--- 472
Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
G S E + VS G G+G+ +V+ I GGHV I S TTI
Sbjct: 473 PGFSTAEQVTD------VS--------GRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIR 518
Query: 786 CRIP 789
+P
Sbjct: 519 ILLP 522
>gnl|CDD|185276 PRK15378, PRK15378, inositol phosphate phosphatase SopB;
Provisional.
Length = 564
Score = 27.9 bits (62), Expect = 9.1
Identities = 5/46 (10%), Positives = 16/46 (34%)
Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
+ + + L K A ++ V+ ++ + + N +
Sbjct: 138 IAARTQQQLGLPAKEAHRFAALAFSDAQVKQLNNQPWQTIKNTLSH 183
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.133 0.383
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 12,419,848
Number of extensions: 798666
Number of successful extensions: 1684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 61
Length of query: 792
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 691
Effective length of database: 3,812,065
Effective search space: 2634136915
Effective search space used: 2634136915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)