HHsearch alignment for GI: 255764477 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=97.84 E-value=1.2e-05 Score=55.74 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=56.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5999888866678999999997-798699904999998500001135665310001222111000111100124678887
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILE 80 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~ 80 (199)
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w---~p~w~~~~~------------------------~e~~~~~~ 53 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHF---SSNWQERDD------------------------DDMIADIS 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEE---CCCCEECCH------------------------HHHHHHHH
T ss_conf 989998899986899999999987979797022788---899988889------------------------99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 53489999999976677420247633345643---255587564227899952111356888871
Q gi|255764477|r 81 KIVHPMVRMHEKKILHDLSCRGEKIVFFDTPL---LFEKRKEYLFDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 81 ~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pL---L~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R 142 (199)
T Consensus 54 ~------------~~~-----~~~-WIiDGny~~~~~~~-rl~~aD~iI~Ld~p~~~~l~rvikR 99 (171)
T PRK07261 54 N------------FLL-----KQD-WIIEGNYSNCLYEE-RMAEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred H------------HHH-----CCC-EEEECCCCCHHHHH-HHHHCCEEEEECCCHHHHHHHHHHH
T ss_conf 9------------984-----898-79947851247776-7977999999858499999999999