HHsearch alignment for GI: 255764477 and conserved domain: TIGR00017
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.32 E-value=1.3e-05 Score=55.62 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=82.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHH---HH---HH---H-----HHHHHHHHHHCCC--C----CC
Q ss_conf 95999888866678999999997-798699904999998---50---00---0-----1135665310001--2----22
Q gi|255764477|r 1 MLIIGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKL---YH---YE---A-----VDIIKKTFPRSIQ--N----NK 59 (199)
Q Consensus 1 M~iIgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l---~~---~~---~-----~~~i~~~fg~~i~--~----~~ 59 (199)
T Consensus 2 ~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v~ 81 (223)
T TIGR00017 2 KMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKVF 81 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEE
T ss_conf 86376237764655789999998629502144328999999999887406885684889999863260442157750688
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 11100011110012467888753489999999976677420247633345643255587564227899952111356888
Q gi|255764477|r 60 VNKARLLGILQKSPAKLEILEKIVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERV 139 (199)
Q Consensus 60 i~r~~l~~~vf~~~~~l~~L~~iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl 139 (199)
T Consensus 82 ~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGRDi-GTvVfPnA~~KiFLdAsve~RA~RR 160 (223)
T TIGR00017 82 LNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGRDI-GTVVFPNAELKIFLDASVEERAKRR 160 (223)
T ss_pred ECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC-CCEECCCCCCCEEECCCHHHHHHHH
T ss_conf 707771322068358999998723777999999999998751589758845523-7446788751324317878998876
Q ss_pred HHHC
Q ss_conf 8717
Q gi|255764477|r 140 LSRK 143 (199)
Q Consensus 140 ~~R~ 143 (199)
T Consensus 161 ~~~~ 164 (223)
T TIGR00017 161 YKDL 164 (223)
T ss_pred HHHH
T ss_conf 9998