HHsearch alignment for GI: 255764477 and conserved domain: TIGR00235

>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=99.31  E-value=4.7e-13  Score=102.24  Aligned_cols=180  Identities=22%  Similarity=0.267  Sum_probs=112.2

Q ss_pred             EEEEEECCCCCCH----HHHHHHHHH-CC-----CEEEEHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             5999888866678----999999997-79-----8699904999998--5000011356653100012221110001111
Q gi|255764477|r    2 LIIGLTGSIGTGK----TTVAEFLKK-EK-----IPVISSDDIVDKL--YHYEAVDIIKKTFPRSIQNNKVNKARLLGIL   69 (199)
Q Consensus         2 ~iIgitG~igSGK----Stv~~~l~~-~G-----~~v~~aD~i~~~l--~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~v   69 (199)
T Consensus        11 ~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfD---HP~AfD~~Ll~~Hl   87 (220)
T TIGR00235        11 IIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFD---HPDAFDNDLLYEHL   87 (220)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC---CCHHCCHHHHHHHH
T ss_conf             799701766101567899999999998314001457750324458898873124643125889---80030379999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---
Q ss_conf             00124678887534899-9999997-66774202476333456-432555875642278999521113568888717---
Q gi|255764477|r   70 QKSPAKLEILEKIVHPM-VRMHEKK-ILHDLSCRGEKIVFFDT-PLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK---  143 (199)
Q Consensus        70 f~~~~~l~~L~~iiHP~-V~~~~~~-~i~~~~~~~~~~vv~e~-pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~---  143 (199)
T Consensus        88 ----~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~L~dlkifvDt~~D~rliRRl~RD~~~  163 (220)
T TIGR00235        88 ----KNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDERLRDLMDLKIFVDTPLDIRLIRRLERDIEE  163 (220)
T ss_pred             ----HHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             ----9984688022454254100202556268735068997061888879998871823677468303256565655754


Q ss_pred             -CCCHH-HHHHHHHCCCCHHHH-----HHHCCEEEE----CCCCHHHHHHHHHHHH
Q ss_conf             -98989-999999729997899-----986898998----7999899999999999
Q gi|255764477|r  144 -KHTEE-NFLFILSKQMNEKDK-----ISRADYVIN----TEGTIEAIEKETQKML  188 (199)
Q Consensus       144 -~~s~e-~~~~~~~~Q~~~~~k-----~~~aD~vI~----N~~s~~~l~~~i~~~~  188 (199)
T Consensus       164 RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~~l~  219 (220)
T TIGR00235       164 RGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIKSLL  219 (220)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             28978899999998534621014550101466762589881688999999999860