HHsearch alignment for GI: 255764477 and conserved domain: TIGR00235
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=99.31 E-value=4.7e-13 Score=102.24 Aligned_cols=180 Identities=22% Similarity=0.267 Sum_probs=112.2
Q ss_pred EEEEEECCCCCCH----HHHHHHHHH-CC-----CEEEEHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 5999888866678----999999997-79-----8699904999998--5000011356653100012221110001111
Q gi|255764477|r 2 LIIGLTGSIGTGK----TTVAEFLKK-EK-----IPVISSDDIVDKL--YHYEAVDIIKKTFPRSIQNNKVNKARLLGIL 69 (199)
Q Consensus 2 ~iIgitG~igSGK----Stv~~~l~~-~G-----~~v~~aD~i~~~l--~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~v 69 (199)
T Consensus 11 ~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfD---HP~AfD~~Ll~~Hl 87 (220)
T TIGR00235 11 IIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFD---HPDAFDNDLLYEHL 87 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC---CCHHCCHHHHHHHH
T ss_conf 799701766101567899999999998314001457750324458898873124643125889---80030379999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHCCCCCCCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHC---
Q ss_conf 00124678887534899-9999997-66774202476333456-432555875642278999521113568888717---
Q gi|255764477|r 70 QKSPAKLEILEKIVHPM-VRMHEKK-ILHDLSCRGEKIVFFDT-PLLFEKRKEYLFDAVVVVTCSFETQRERVLSRK--- 143 (199)
Q Consensus 70 f~~~~~l~~L~~iiHP~-V~~~~~~-~i~~~~~~~~~~vv~e~-pLL~E~~~~~~~d~vi~V~a~~~~r~~Rl~~R~--- 143 (199)
T Consensus 88 ----~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~Rl~~L~dlkifvDt~~D~rliRRl~RD~~~ 163 (220)
T TIGR00235 88 ----KNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDERLRDLMDLKIFVDTPLDIRLIRRLERDIEE 163 (220)
T ss_pred ----HHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf ----9984688022454254100202556268735068997061888879998871823677468303256565655754
Q ss_pred -CCCHH-HHHHHHHCCCCHHHH-----HHHCCEEEE----CCCCHHHHHHHHHHHH
Q ss_conf -98989-999999729997899-----986898998----7999899999999999
Q gi|255764477|r 144 -KHTEE-NFLFILSKQMNEKDK-----ISRADYVIN----TEGTIEAIEKETQKML 188 (199)
Q Consensus 144 -~~s~e-~~~~~~~~Q~~~~~k-----~~~aD~vI~----N~~s~~~l~~~i~~~~ 188 (199)
T Consensus 164 RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I~~l~ 219 (220)
T TIGR00235 164 RGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKIKSLL 219 (220)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 28978899999998534621014550101466762589881688999999999860