HHsearch alignment for GI: 255764477 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=97.46 E-value=0.00084 Score=44.27 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=60.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 59998888666789999999977986999049999985000011356653100012221110001111001246788875
Q gi|255764477|r 2 LIIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEK 81 (199)
Q Consensus 2 ~iIgitG~igSGKStv~~~l~~~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~ 81 (199)
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~G~qviDLEglAnH----R-----GS~FG~~~~-~----~QPsQk~FE---------n 184 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANH----R-----GSSFGALGL-G----PQPSQKRFE---------N 184 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHC----C-----CCCCCCCCC-C----CCCCHHHHH---------H
T ss_conf 769987888877899999999769974258998631----4-----653468888-9----997899999---------9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------C-CCC-CEEEEEEECCCHHHHHHHHHH
Q ss_conf 348999999997667742024763334564325558----------7-564-227899952111356888871
Q gi|255764477|r 82 IVHPMVRMHEKKILHDLSCRGEKIVFFDTPLLFEKR----------K-EYL-FDAVVVVTCSFETQRERVLSR 142 (199)
Q Consensus 82 iiHP~V~~~~~~~i~~~~~~~~~~vv~e~pLL~E~~----------~-~~~-~d~vi~V~a~~~~r~~Rl~~R 142 (199)
T Consensus 185 ~l~~~l--------~--~~~~~~~i~vE~----ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~ 243 (311)
T TIGR03167 185 ALAEAL--------R--RLDPGRPIFVED----ESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEE 243 (311)
T ss_pred HHHHHH--------H--CCCCCCCEEEEE----CCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999--------8--178889569960----3313057138999999985199899989999999999998