HHsearch alignment for GI: 255764477 and conserved domain: cd00464

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.85  E-value=6.1e-08  Score=70.20  Aligned_cols=137  Identities=26%  Similarity=0.272  Sum_probs=78.5

Q ss_pred             EEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99888866678999999997-79869990499999850000113566531000122211100011110012467888753
Q gi|255764477|r    4 IGLTGSIGTGKTTVAEFLKK-EKIPVISSDDIVDKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGILQKSPAKLEILEKI   82 (199)
Q Consensus         4 IgitG~igSGKStv~~~l~~-~G~~v~~aD~i~~~l~~~~~~~~i~~~fg~~i~~~~i~r~~l~~~vf~~~~~l~~L~~i   82 (199)
T Consensus         2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~~g~si~eif-~~~Ge~~--------------F------R~~E~-   59 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIF-AEEGEEG--------------F------RELER-   59 (154)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHH-HHCCHHH--------------H------HHHHH-
T ss_conf             899889999889999999999798979685999999499999999-8749387--------------8------99999-


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHHHC--C----CCHHHHHH
Q ss_conf             489999999976677420247633345--643255587--5642278999521113568888717--9----89899999
Q gi|255764477|r   83 VHPMVRMHEKKILHDLSCRGEKIVFFD--TPLLFEKRK--EYLFDAVVVVTCSFETQRERVLSRK--K----HTEENFLF  152 (199)
Q Consensus        83 iHP~V~~~~~~~i~~~~~~~~~~vv~e--~pLL~E~~~--~~~~d~vi~V~a~~~~r~~Rl~~R~--~----~s~e~~~~  152 (199)
T Consensus        60 ----------~~l~~~~~-~~~~VIs~GGG~v~~~~~~~~l~~~~~vI~L~~~~~~l~~Rl~~~~~RPll~~~~~~~l~~  128 (154)
T cd00464          60 ----------EVLLLLLT-KENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRE  128 (154)
T ss_pred             ----------HHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             ----------99999856-8985997389733689999999957908999579999999960799999888999999999


Q ss_pred             HHHCCCCHHHHHHHCCEEEECCC
Q ss_conf             99729997899986898998799
Q gi|255764477|r  153 ILSKQMNEKDKISRADYVINTEG  175 (199)
Q Consensus       153 ~~~~Q~~~~~k~~~aD~vI~N~~  175 (199)
T Consensus       129 l~~~R--~~~Y~~~Ad~~i~~~~  149 (154)
T cd00464         129 LLEER--EPLYREVADLTIDTDE  149 (154)
T ss_pred             HHHHH--HHHHHHHCCEEEECCC
T ss_conf             99999--9999987999997989