HHsearch alignment for GI: 255764477 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.79 E-value=0.11 Score=31.05 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9998888666789999999977
Q gi|255764477|r 3 IIGLTGSIGTGKTTVAEFLKKE 24 (199)
Q Consensus 3 iIgitG~igSGKStv~~~l~~~ 24 (199)
T Consensus 27 nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999899999999961