Query gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 13:36:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1z8r_A Coxsackievirus B4 poly 14.6 53 0.0016 16.0 0.5 26 15-40 13-38 (68)
2 >1qqg_A IRS-1, insulin recepto 14.2 89 0.0026 14.8 1.6 15 28-42 3-17 (68)
3 >1f32_A Major pepsin inhibitor 12.0 78 0.0023 15.1 0.8 23 3-25 11-33 (47)
4 >2dyb_A Neutrophil cytosol fac 11.3 97 0.0029 14.6 1.1 14 12-25 1-14 (107)
5 >2zkq_n 40S ribosomal protein 11.2 52 0.0015 16.0 -0.3 14 16-29 19-32 (56)
6 >3jyv_N 40S ribosomal protein 9.6 66 0.002 15.5 -0.3 14 16-29 15-28 (50)
7 >2djr_A Zinc finger BED domain 9.5 1.6E+02 0.0047 13.4 1.6 23 4-26 17-39 (45)
8 >2w5e_A Putative serine protea 8.6 64 0.0019 15.5 -0.6 23 19-41 16-39 (80)
9 >2i7f_A Ferredoxin component o 8.5 1.3E+02 0.0037 14.0 0.8 28 3-38 1-28 (38)
10 >1edy_A Alpha 1-macroglobulin; 7.3 2E+02 0.006 12.8 1.4 13 31-43 69-81 (134)
No 1
>>1z8r_A Coxsackievirus B4 polyprotein; beta barrel coordinated zinc ION, hydrolase; NMR {Human coxsackievirus B4} (A:1-68)
Probab=14.56 E-value=53 Score=16.00 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEEECCCCCEEEEEEEECCCCEE
Q ss_conf 46557522446638876552114637
Q gi|255764479|r 15 FINCMRCSRQSGVIVAKRFDIMNNHV 40 (43)
Q Consensus 15 fincmrcsrqsgvivakrfdimnnhv 40 (43)
.++.--...|||-+..--+.|||-|.
T Consensus 13 ~~ttg~fG~qsGavyvGnYkIvNrHL 38 (68)
T 1z8r_A 13 LITTGPYGHQSGAVYVGNYKVVNRHL 38 (68)
T ss_dssp ----CCCCCCCCSEEETTEEEEEGGG
T ss_pred EEECCCCCCCCCEEEECCEEEEEECC
T ss_conf 16606876657839984369997023
No 2
>>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} (A:66-133)
Probab=14.17 E-value=89 Score=14.77 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred EEEEEEECCCCEEEE
Q ss_conf 887655211463785
Q gi|255764479|r 28 IVAKRFDIMNNHVIV 42 (43)
Q Consensus 28 ivakrfdimnnhviv 42 (43)
-+.||+|.-+.|+|+
T Consensus 3 nInkR~D~KhKhlIa 17 (68)
T 1qqg_A 3 NINKRADSKNKHLVA 17 (68)
T ss_dssp EEEEECCSSCSSEEE
T ss_pred EEECCCCCCCCEEEE
T ss_conf 786065777743999
No 3
>>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} (A:1-10,A:61-97)
Probab=12.05 E-value=78 Score=15.06 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 78886655455146557522446
Q gi|255764479|r 3 NAPPSCGVTEGHFINCMRCSRQS 25 (43)
Q Consensus 3 nappscgvteghfincmrcsrqs 25 (43)
..||-||-.+-...|-..||--.
T Consensus 11 kpppfcgpqdmkmfnfvgcsvlg 33 (47)
T 1f32_A 11 KPPPFCGPQDMKMFNFVGCSVLG 33 (47)
T ss_dssp CCCGGGCCTTCEEEEETTEEEET
T ss_pred CCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 89997787763589971069876
No 4
>>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} (A:235-341)
Probab=11.28 E-value=97 Score=14.58 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.1
Q ss_pred CCCEEEEEEECCCC
Q ss_conf 55146557522446
Q gi|255764479|r 12 EGHFINCMRCSRQS 25 (43)
Q Consensus 12 eghfincmrcsrqs 25 (43)
|+|-.||.||---.
T Consensus 1 e~~~~~~LRCy~ye 14 (107)
T 2dyb_A 1 EDDPTNWLRCYYYE 14 (107)
T ss_dssp TTCCCEEEEEEEEC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 77875555555566
No 5
>>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N (n:)
Probab=11.24 E-value=52 Score=16.02 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=11.4
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 65575224466388
Q gi|255764479|r 16 INCMRCSRQSGVIV 29 (43)
Q Consensus 16 incmrcsrqsgviv 29 (43)
-.|-+|+++.|+|-
T Consensus 19 r~Cr~Cg~~~glIr 32 (56)
T 2zkq_n 19 RSCRVCSNRHGLIR 32 (56)
T ss_dssp CCCSSSCCSTTCCT
T ss_pred EEEEECCCCCCEEE
T ss_conf 06787699763788
No 6
>>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (N:)
Probab=9.58 E-value=66 Score=15.46 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.3
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 65575224466388
Q gi|255764479|r 16 INCMRCSRQSGVIV 29 (43)
Q Consensus 16 incmrcsrqsgviv 29 (43)
-.|-+|+++.|+|-
T Consensus 15 r~Cr~Cg~~~glIr 28 (50)
T 3jyv_N 15 RQCRVCSSHTGLVR 28 (50)
T ss_dssp CCCSSSCCCSSCCS
T ss_pred CEEEECCCCCCEEE
T ss_conf 82375799865778
No 7
>>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-45)
Probab=9.48 E-value=1.6e+02 Score=13.41 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 88866554551465575224466
Q gi|255764479|r 4 APPSCGVTEGHFINCMRCSRQSG 26 (43)
Q Consensus 4 appscgvteghfincmrcsrqsg 26 (43)
||..-|-..+++..|--|.+|-+
T Consensus 17 apar~gH~~~~~ATCRLCG~QV~ 39 (45)
T 2djr_A 17 APARAGHHPNQYATCRLCGRQVS 39 (45)
T ss_dssp CCCCSSSCSCSCEEESSSCCBCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 63668898761188988888745
No 8
>>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} (A:1-80)
Probab=8.62 E-value=64 Score=15.53 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=15.8
Q ss_pred EEECCCCCEEEEEE-EECCCCEEE
Q ss_conf 75224466388765-521146378
Q gi|255764479|r 19 MRCSRQSGVIVAKR-FDIMNNHVI 41 (43)
Q Consensus 19 mrcsrqsgvivakr-fdimnnhvi 41 (43)
..-+.-||+++.+. +=+-|.||+
T Consensus 16 ~~~~~GSGfii~~~G~IlTn~HVV 39 (80)
T 2w5e_A 16 IDTPEGKGTGFFSGNDIVTAAHVV 39 (80)
T ss_dssp EEETTEEEEEEEETTEEEEEHHHH
T ss_pred EECCCCCEEEEEECCEEEECCHHH
T ss_conf 989996299999899999881570
No 9
>>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} (A:49-86)
Probab=8.52 E-value=1.3e+02 Score=13.97 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 788866554551465575224466388765521146
Q gi|255764479|r 3 NAPPSCGVTEGHFINCMRCSRQSGVIVAKRFDIMNN 38 (43)
Q Consensus 3 nappscgvteghfincmrcsrqsgvivakrfdimnn 38 (43)
|||-|-|.-+|.-|.| ....+ +|||-..
T Consensus 1 ~a~Ls~G~l~~~~i~C---P~H~~-----~Fdi~tG 28 (38)
T 2i7f_A 1 NAMLTDGYQDGTIIEC---PFHGG-----SFDIATG 28 (38)
T ss_dssp SCBGGGSEEETTEEEC---SSTTC-----EEETTTC
T ss_pred CCCCCCCCCCCCEEEC---CCCCC-----EEECCCC
T ss_conf 2120232137984970---25587-----9857888
No 10
>>1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} (A:)
Probab=7.30 E-value=2e+02 Score=12.85 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=0.0
Q ss_pred EEEECCCCEEEEC
Q ss_conf 6552114637859
Q gi|255764479|r 31 KRFDIMNNHVIVY 43 (43)
Q Consensus 31 krfdimnnhvivy 43 (43)
+|+++-+++|++|
T Consensus 69 ~r~E~~~~~v~lY 81 (134)
T 1edy_A 69 QRTEVNTNHVLIY 81 (134)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEECCCEEEEE
T ss_conf 8899639869999
Done!