Query gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 06:03:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764479.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjua_ d.15.1.1 (A:) NEDD8 ul 9.4 55 0.004 13.8 1.3 21 6-26 76-96 (100)
2 d1ayoa_ b.2.4.1 (A:) alpha-2-m 8.0 73 0.0053 13.1 1.4 14 30-43 67-80 (130)
3 d2uyzb1 d.15.1.1 (B:20-96) SUM 5.7 89 0.0065 12.7 0.9 21 4-26 57-77 (77)
4 d1oeyj_ d.15.2.2 (J:) Neutroph 5.6 91 0.0066 12.6 0.9 11 14-24 1-11 (105)
5 d1wiaa_ d.15.1.1 (A:) Ubiquiti 5.6 1E+02 0.0075 12.3 1.9 18 5-22 61-78 (95)
6 d1euca2 c.23.4.1 (A:131-306) S 5.5 49 0.0036 14.1 -0.5 18 21-38 147-164 (176)
7 d1edya_ b.2.4.1 (A:) alpha-1-m 5.5 1E+02 0.0076 12.3 1.4 14 30-43 68-81 (134)
8 d1dcqa2 g.45.1.1 (A:247-368) P 5.0 52 0.0038 13.9 -0.7 17 5-22 26-42 (122)
9 d1mcvi_ g.3.2.1 (I:) Trypsin i 4.2 94 0.0069 12.5 0.2 7 19-25 7-13 (28)
10 d1ky9a2 b.47.1.1 (A:11-259) Pr 3.7 59 0.0043 13.6 -1.2 17 25-41 79-97 (249)
No 1
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41 E-value=55 Score=13.78 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=15.5
Q ss_pred CCCCCCCCCEEEEEEECCCCC
Q ss_conf 866554551465575224466
Q gi|255764479|r 6 PSCGVTEGHFINCMRCSRQSG 26 (43)
Q Consensus 6 pscgvteghfincmrcsrqsg 26 (43)
.+||+.++..|..|+-.+.++
T Consensus 76 ~~~gI~~~s~i~vi~~~~~~~ 96 (100)
T d1wjua_ 76 EEQGVAHNVKAMVLELKQSSG 96 (100)
T ss_dssp HHHTCCSSEEEEEECCCCCCC
T ss_pred HHCCCCCCCEEEEEECCCCCC
T ss_conf 776989999999997178999
No 2
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.98 E-value=73 Score=13.12 Aligned_cols=14 Identities=43% Similarity=0.899 Sum_probs=11.4
Q ss_pred EEEEECCCCEEEEC
Q ss_conf 76552114637859
Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43)
Q Consensus 30 akrfdimnnhvivy 43 (43)
.+|+++-+++|++|
T Consensus 67 v~r~E~~~~~V~lY 80 (130)
T d1ayoa_ 67 VSRTEVSNNHVLIY 80 (130)
T ss_dssp EEEEEEETTEEEEE
T ss_pred CEEEEECCCEEEEE
T ss_conf 66889739989999
No 3
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66 E-value=89 Score=12.66 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 88866554551465575224466
Q gi|255764479|r 4 APPSCGVTEGHFINCMRCSRQSG 26 (43)
Q Consensus 4 appscgvteghfincmrcsrqsg 26 (43)
.|-+.++.+|+.|.++. +|.|
T Consensus 57 T~~~l~~edgD~Idv~~--~q~G 77 (77)
T d2uyzb1 57 TPKELGMEEEDVIEVYQ--EQTG 77 (77)
T ss_dssp CHHHHTCCTTEEEEEEE--CCCC
T ss_pred CHHHCCCCCCCEEEEEE--ECCC
T ss_conf 98993999999999997--4479
No 4
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.64 E-value=91 Score=12.60 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.0
Q ss_pred CEEEEEEECCC
Q ss_conf 14655752244
Q gi|255764479|r 14 HFINCMRCSRQ 24 (43)
Q Consensus 14 hfincmrcsrq 24 (43)
|..||.||---
T Consensus 1 h~~~~lrcy~~ 11 (105)
T d1oeyj_ 1 HMTNWLRVYYY 11 (105)
T ss_dssp CCCEEEEEEEE
T ss_pred CCCCEEEEEEE
T ss_conf 94205899997
No 5
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.61 E-value=1e+02 Score=12.32 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.9
Q ss_pred CCCCCCCCCCEEEEEEEC
Q ss_conf 886655455146557522
Q gi|255764479|r 5 PPSCGVTEGHFINCMRCS 22 (43)
Q Consensus 5 ppscgvteghfincmrcs 22 (43)
--+|++.+|.+|.+|+-.
T Consensus 61 L~~y~i~~g~~v~l~~~~ 78 (95)
T d1wiaa_ 61 LSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp TTTTTCCTTEEEEEECCC
T ss_pred HHHCCCCCCCEEEEEECC
T ss_conf 899699989899999738
No 6
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.51 E-value=49 Score=14.06 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=13.4
Q ss_pred ECCCCCEEEEEEEECCCC
Q ss_conf 224466388765521146
Q gi|255764479|r 21 CSRQSGVIVAKRFDIMNN 38 (43)
Q Consensus 21 csrqsgvivakrfdimnn 38 (43)
.-||.|||++..||-|.+
T Consensus 147 afrqaGvi~v~s~~El~~ 164 (176)
T d1euca2 147 ALQSAGVVVSMSPAQLGT 164 (176)
T ss_dssp HHHHTTCEECSSGGGHHH
T ss_pred HHHHCCCEECCCHHHHHH
T ss_conf 999889869299999999
No 7
>d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.45 E-value=1e+02 Score=12.27 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.4
Q ss_pred EEEEECCCCEEEEC
Q ss_conf 76552114637859
Q gi|255764479|r 30 AKRFDIMNNHVIVY 43 (43)
Q Consensus 30 akrfdimnnhvivy 43 (43)
.+|+++-+++|++|
T Consensus 68 v~r~E~~~~~v~lY 81 (134)
T d1edya_ 68 IQRTEVNTNHVLIY 81 (134)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEECCCEEEEE
T ss_conf 37999539969999
No 8
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.01 E-value=52 Score=13.91 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=11.9
Q ss_pred CCCCCCCCCCEEEEEEEC
Q ss_conf 886655455146557522
Q gi|255764479|r 5 PPSCGVTEGHFINCMRCS 22 (43)
Q Consensus 5 ppscgvteghfincmrcs 22 (43)
|.-+-++-|-|+ |++||
T Consensus 26 p~w~s~n~Gvfv-C~~Cs 42 (122)
T d1dcqa2 26 PTWLSTNLGILT-CIECS 42 (122)
T ss_dssp CCEEETTTTEEE-CHHHH
T ss_pred CCEEEECCCEEE-CHHHH
T ss_conf 996994279887-05455
No 9
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=4.19 E-value=94 Score=12.52 Aligned_cols=7 Identities=57% Similarity=1.199 Sum_probs=0.0
Q ss_pred EEECCCC
Q ss_conf 7522446
Q gi|255764479|r 19 MRCSRQS 25 (43)
Q Consensus 19 mrcsrqs 25 (43)
|||.|.|
T Consensus 7 m~c~~ds 13 (28)
T d1mcvi_ 7 MRCKQDS 13 (28)
T ss_dssp CBCSSGG
T ss_pred HHCCCCC
T ss_conf 1023544
No 10
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=3.68 E-value=59 Score=13.62 Aligned_cols=17 Identities=47% Similarity=0.845 Sum_probs=0.0
Q ss_pred CCEEEEEE--EECCCCEEE
Q ss_conf 66388765--521146378
Q gi|255764479|r 25 SGVIVAKR--FDIMNNHVI 41 (43)
Q Consensus 25 sgvivakr--fdimnnhvi 41 (43)
||+|+.+. +=+-|+||+
T Consensus 79 SG~iI~~~~g~IlTn~HVv 97 (249)
T d1ky9a2 79 SGVIIDADKGYVVTNNHVV 97 (249)
T ss_dssp EEEEEETTTTEEEEEHHHH
T ss_pred CEEEEECCCCEEEEECCCC
T ss_conf 3799861582698621201
Done!