RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764479|ref|YP_003084342.1| hypothetical protein
CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>2bhg_A Foot-and-mouth disease virus 3C protease;
          chymotrypsin-like cysteine protease, capsid protein,
          core protein; 1.9A {Foot-and-mouth disease virus} (A:)
          Length = 209

 Score = 25.2 bits (54), Expect = 3.6
 Identities = 2/17 (11%), Positives = 5/17 (29%)

Query: 25 SGVIVAKRFDIMNNHVI 41
              V     ++  H+ 
Sbjct: 33 CATGVFGTAYLVPRHLF 49


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 352,212
Number of extensions: 9712
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 43
Length of database: 4,956,049
Length adjustment: 15
Effective length of query: 28
Effective length of database: 4,448,974
Effective search space: 124571272
Effective search space used: 124571272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.7 bits)