RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764479|ref|YP_003084342.1| hypothetical protein CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like cysteine protease, capsid protein, core protein; 1.9A {Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB: 2j92_A 2wv4_A 2wv5_A Length = 209 Score = 23.9 bits (51), Expect = 9.8 Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 5/42 (11%) Query: 1 MKNAPPSCGVTEGHFINCMRCSRQSGVIVAKRFDIMNNHVIV 42 M N P +G + V ++ H+ Sbjct: 14 MGNTKPVELNLDGKTVAIC-----CATGVFGTAYLVPRHLFA 50 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.328 0.138 0.451 Gapped Lambda K H 0.267 0.0479 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 399,154 Number of extensions: 11377 Number of successful extensions: 36 Number of sequences better than 10.0: 1 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 5 Length of query: 43 Length of database: 5,693,230 Length adjustment: 16 Effective length of query: 27 Effective length of database: 5,305,326 Effective search space: 143243802 Effective search space used: 143243802 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.6 bits)