RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764479|ref|YP_003084342.1| hypothetical protein
CLIBASIA_03362 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
          cysteine protease, capsid protein, core protein; 1.9A
          {Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
          2j92_A 2wv4_A 2wv5_A
          Length = 209

 Score = 23.9 bits (51), Expect = 9.8
 Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 5/42 (11%)

Query: 1  MKNAPPSCGVTEGHFINCMRCSRQSGVIVAKRFDIMNNHVIV 42
          M N  P     +G  +            V     ++  H+  
Sbjct: 14 MGNTKPVELNLDGKTVAIC-----CATGVFGTAYLVPRHLFA 50


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 399,154
Number of extensions: 11377
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 5
Length of query: 43
Length of database: 5,693,230
Length adjustment: 16
Effective length of query: 27
Effective length of database: 5,305,326
Effective search space: 143243802
Effective search space used: 143243802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.6 bits)