Query gi|255764480|ref|YP_003084343.1| hypothetical protein CLIBASIA_03352 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 57 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 13:40:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764480.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2yrm_A B-cell lymphoma 6 prot 34.0 11 0.00032 19.8 0.2 17 5-21 15-31 (43) 2 >2og5_A Putative oxygenase; no 13.5 59 0.0018 16.3 0.6 30 2-31 176-211 (357) 3 >1m1c_A GAG protein, major coa 13.1 83 0.0025 15.6 1.2 22 20-41 90-111 (239) 4 >3e20_C Eukaryotic peptide cha 12.1 79 0.0023 15.7 0.8 12 2-13 94-105 (175) 5 >3fvy_A Dipeptidyl-peptidase 3 7.3 1.3E+02 0.0039 14.6 0.5 13 44-56 2-14 (37) 6 >1wfx_A Probable RNA 2'-phosph 6.6 2.4E+02 0.0072 13.4 1.5 21 25-45 8-28 (103) 7 >2d0o_A DIOL dehydratase-react 6.1 2.6E+02 0.0076 13.3 1.5 15 43-57 8-22 (48) 8 >1fui_A L-fucose isomerase; ke 6.1 1.4E+02 0.0041 14.5 0.1 17 1-17 215-240 (418) 9 >1nbw_A Glycerol dehydratase r 6.1 2.6E+02 0.0077 13.2 1.5 15 43-57 7-21 (47) 10 >1hj0_A Thymosin BETA9; actin 6.0 63 0.0019 16.1 -1.7 21 12-32 1-21 (41) No 1 >>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=33.98 E-value=11 Score=19.75 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=11.8 Q ss_pred EECCCCCCCCCCHHHHH Q ss_conf 50321114482423353 Q gi|255764480|r 5 HCDSRFAEDKPDIQGFL 21 (57) Q Consensus 5 hcdsrfaedkpdiqgfl 21 (57) .||+||+|+..--+-.| T Consensus 15 eCD~kF~Ee~sLK~h~L 31 (43) T 2yrm_A 15 ECDCRFSEEASLKRHTL 31 (43) T ss_dssp SSCCCBSSHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHH T ss_conf 45420216788877565 No 2 >>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* (A:) Probab=13.49 E-value=59 Score=16.26 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.2 Q ss_pred EEEEECCCCCCCCCCHHHHHH------HCCCEEEEE Q ss_conf 147503211144824233532------066403541 Q gi|255764480|r 2 MFWHCDSRFAEDKPDIQGFLS------YGSSTIYHT 31 (57) Q Consensus 2 mfwhcdsrfaedkpdiqgfls------ygsstiyht 31 (57) +.||+|.-|-++-|+++.|+. -|.+|++-. T Consensus 176 l~~HtD~~y~~~~p~~~~L~c~~~~~~GG~st~v~~ 211 (357) T 2og5_A 176 LTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTAC 211 (357) T ss_dssp EEEECTTTTCTTCCSEEEEEEEECCTTSCCCEEEEE T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEHH T ss_conf 646425899889986116886644899986446027 No 3 >>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} (A:1-16,A:57-80,A:285-434,A:632-680) Probab=13.12 E-value=83 Score=15.57 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=19.3 Q ss_pred HHHHCCCEEEEEHHHHHHHHHH Q ss_conf 5320664035411211344431 Q gi|255764480|r 20 FLSYGSSTIYHTTALREWSTIW 41 (57) Q Consensus 20 flsygsstiyhttalrewstiw 41 (57) ||+-|...+-..+||.||+.|- T Consensus 90 FL~sgeaA~i~~raLndWs~~~ 111 (239) T 1m1c_A 90 FLLSGDAALIQATALEDWSAIM 111 (239) T ss_dssp TTTCSCEEEEEHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHH T ss_conf 4347757765177898999987 No 4 >>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe} (C:35-209) Probab=12.06 E-value=79 Score=15.69 Aligned_cols=12 Identities=25% Similarity=0.745 Sum_probs=8.4 Q ss_pred EEEEECCCCCCC Q ss_conf 147503211144 Q gi|255764480|r 2 MFWHCDSRFAED 13 (57) Q Consensus 2 mfwhcdsrfaed 13 (57) -+|+||++|.-+ T Consensus 94 ~~y~cd~~F~~e 105 (175) T 3e20_C 94 SQYLCDNKFHTE 105 (175) T ss_dssp CEEEEESSCCCT T ss_pred HEEEECCCCCHH T ss_conf 204537934343 No 5 >>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} (A:460-496) Probab=7.28 E-value=1.3e+02 Score=14.61 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=9.0 Q ss_pred EEEEECCCCEEEE Q ss_conf 0023246871631 Q gi|255764480|r 44 EFFMESEDGTLHF 56 (57) Q Consensus 44 effmesedgtlhf 56 (57) ..|+|.+||++.| T Consensus 2 KL~~~~~~G~fNF 14 (37) T 3fvy_A 2 KLFVQDEKGAFNF 14 (37) T ss_dssp CCCBBCTTSCBSS T ss_pred CCCCCCCCCCCCC T ss_conf 4452158886455 No 6 >>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} (A:84-186) Probab=6.57 E-value=2.4e+02 Score=13.38 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.9 Q ss_pred CCEEEEEHHHHHHHHHHCCEE Q ss_conf 640354112113444310000 Q gi|255764480|r 25 SSTIYHTTALREWSTIWSSEF 45 (57) Q Consensus 25 sstiyhttalrewstiwssef 45 (57) ..++||-|..+.|..|-.+-. T Consensus 8 P~~LyHGT~~~~~~~I~~~GL 28 (103) T 1wfx_A 8 PPILYHGTTEEALPLIXERGI 28 (103) T ss_dssp CSEEEECCBGGGHHHHHHHCB T ss_pred CCEEEECCCHHHHHHHHHHCC T ss_conf 866884575999999998570 No 7 >>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:464-511) Probab=6.14 E-value=2.6e+02 Score=13.27 Aligned_cols=15 Identities=40% Similarity=0.837 Sum_probs=11.4 Q ss_pred CEEEEECCCCEEEEC Q ss_conf 000232468716319 Q gi|255764480|r 43 SEFFMESEDGTLHFL 57 (57) Q Consensus 43 seffmesedgtlhfl 57 (57) |-|-+.-|||+..|. T Consensus 8 sLfhiRhEdGtVqFF 22 (48) T 2d0o_A 8 SLFHLRHEDGSVQFF 22 (48) T ss_dssp SSSEEEETTSCEEEC T ss_pred CHHHHHHHHHHHHHH T ss_conf 878899998777762 No 8 >>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli K12} (A:174-591) Probab=6.13 E-value=1.4e+02 Score=14.54 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.4 Q ss_pred CEEEEEC---------CCCCCCCCCH Q ss_conf 9147503---------2111448242 Q gi|255764480|r 1 MMFWHCD---------SRFAEDKPDI 17 (57) Q Consensus 1 mmfwhcd---------srfaedkpdi 17 (57) ++||||- ...++.||-+ T Consensus 215 i~l~HcG~~p~~~a~~~~~~~~k~~l 240 (418) T 1fui_A 215 IHLINSGSAALDGSCKQRDSEGNPTM 240 (418) T ss_dssp EEECCSSCCCGGGGCCEECTTSCEEC T ss_pred EEEECCCCHHCCCCCCCCCCCCCCCC T ss_conf 55422783321554561001478756 No 9 >>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} (A:467-513) Probab=6.08 E-value=2.6e+02 Score=13.25 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=11.3 Q ss_pred CEEEEECCCCEEEEC Q ss_conf 000232468716319 Q gi|255764480|r 43 SEFFMESEDGTLHFL 57 (57) Q Consensus 43 seffmesedgtlhfl 57 (57) |-|-+.-|||+..|. T Consensus 7 sLfhiRhEdGtVqFF 21 (47) T 1nbw_A 7 SLFSIRHENGAVEFF 21 (47) T ss_dssp SSSEEEETTSCEEEC T ss_pred CHHHHHHHHHHHHHC T ss_conf 989999997455531 No 10 >>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation, immunopotentiation, thymus, actin; NMR {Bos taurus} (A:) Probab=6.00 E-value=63 Score=16.13 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.3 Q ss_pred CCCCCHHHHHHHCCCEEEEEH Q ss_conf 448242335320664035411 Q gi|255764480|r 12 EDKPDIQGFLSYGSSTIYHTT 32 (57) Q Consensus 12 edkpdiqgflsygsstiyhtt 32 (57) .||||+.+.-++..+.+-+|- T Consensus 1 sdKpd~~eie~FdksKLKkTE 21 (41) T 1hj0_A 1 ADKPDLGEINSFDKAKLKKTE 21 (41) T ss_dssp CCCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCH T ss_conf 987662310202287631100 Done!