Query         gi|255764480|ref|YP_003084343.1| hypothetical protein CLIBASIA_03352 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 57
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 13:40:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764480.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2yrm_A B-cell lymphoma 6 prot  34.0      11 0.00032   19.8   0.2   17    5-21     15-31  (43)
  2 >2og5_A Putative oxygenase; no  13.5      59  0.0018   16.3   0.6   30    2-31    176-211 (357)
  3 >1m1c_A GAG protein, major coa  13.1      83  0.0025   15.6   1.2   22   20-41     90-111 (239)
  4 >3e20_C Eukaryotic peptide cha  12.1      79  0.0023   15.7   0.8   12    2-13     94-105 (175)
  5 >3fvy_A Dipeptidyl-peptidase 3   7.3 1.3E+02  0.0039   14.6   0.5   13   44-56      2-14  (37)
  6 >1wfx_A Probable RNA 2'-phosph   6.6 2.4E+02  0.0072   13.4   1.5   21   25-45      8-28  (103)
  7 >2d0o_A DIOL dehydratase-react   6.1 2.6E+02  0.0076   13.3   1.5   15   43-57      8-22  (48)
  8 >1fui_A L-fucose isomerase; ke   6.1 1.4E+02  0.0041   14.5   0.1   17    1-17    215-240 (418)
  9 >1nbw_A Glycerol dehydratase r   6.1 2.6E+02  0.0077   13.2   1.5   15   43-57      7-21  (47)
 10 >1hj0_A Thymosin BETA9; actin    6.0      63  0.0019   16.1  -1.7   21   12-32      1-21  (41)

No 1  
>>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=33.98  E-value=11  Score=19.75  Aligned_cols=17  Identities=35%  Similarity=0.620  Sum_probs=11.8

Q ss_pred             EECCCCCCCCCCHHHHH
Q ss_conf             50321114482423353
Q gi|255764480|r    5 HCDSRFAEDKPDIQGFL   21 (57)
Q Consensus         5 hcdsrfaedkpdiqgfl   21 (57)
                      .||+||+|+..--+-.|
T Consensus        15 eCD~kF~Ee~sLK~h~L   31 (43)
T 2yrm_A           15 ECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             SSCCCBSSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             45420216788877565


No 2  
>>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* (A:)
Probab=13.49  E-value=59  Score=16.26  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             EEEEECCCCCCCCCCHHHHHH------HCCCEEEEE
Q ss_conf             147503211144824233532------066403541
Q gi|255764480|r    2 MFWHCDSRFAEDKPDIQGFLS------YGSSTIYHT   31 (57)
Q Consensus         2 mfwhcdsrfaedkpdiqgfls------ygsstiyht   31 (57)
                      +.||+|.-|-++-|+++.|+.      -|.+|++-.
T Consensus       176 l~~HtD~~y~~~~p~~~~L~c~~~~~~GG~st~v~~  211 (357)
T 2og5_A          176 LTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTAC  211 (357)
T ss_dssp             EEEECTTTTCTTCCSEEEEEEEECCTTSCCCEEEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEHH
T ss_conf             646425899889986116886644899986446027


No 3  
>>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} (A:1-16,A:57-80,A:285-434,A:632-680)
Probab=13.12  E-value=83  Score=15.57  Aligned_cols=22  Identities=41%  Similarity=0.783  Sum_probs=19.3

Q ss_pred             HHHHCCCEEEEEHHHHHHHHHH
Q ss_conf             5320664035411211344431
Q gi|255764480|r   20 FLSYGSSTIYHTTALREWSTIW   41 (57)
Q Consensus        20 flsygsstiyhttalrewstiw   41 (57)
                      ||+-|...+-..+||.||+.|-
T Consensus        90 FL~sgeaA~i~~raLndWs~~~  111 (239)
T 1m1c_A           90 FLLSGDAALIQATALEDWSAIM  111 (239)
T ss_dssp             TTTCSCEEEEEHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             4347757765177898999987


No 4  
>>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, cytoplasm, GTP-binding; 3.50A {Schizosaccharomyces pombe} (C:35-209)
Probab=12.06  E-value=79  Score=15.69  Aligned_cols=12  Identities=25%  Similarity=0.745  Sum_probs=8.4

Q ss_pred             EEEEECCCCCCC
Q ss_conf             147503211144
Q gi|255764480|r    2 MFWHCDSRFAED   13 (57)
Q Consensus         2 mfwhcdsrfaed   13 (57)
                      -+|+||++|.-+
T Consensus        94 ~~y~cd~~F~~e  105 (175)
T 3e20_C           94 SQYLCDNKFHTE  105 (175)
T ss_dssp             CEEEEESSCCCT
T ss_pred             HEEEECCCCCHH
T ss_conf             204537934343


No 5  
>>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} (A:460-496)
Probab=7.28  E-value=1.3e+02  Score=14.61  Aligned_cols=13  Identities=31%  Similarity=0.910  Sum_probs=9.0

Q ss_pred             EEEEECCCCEEEE
Q ss_conf             0023246871631
Q gi|255764480|r   44 EFFMESEDGTLHF   56 (57)
Q Consensus        44 effmesedgtlhf   56 (57)
                      ..|+|.+||++.|
T Consensus         2 KL~~~~~~G~fNF   14 (37)
T 3fvy_A            2 KLFVQDEKGAFNF   14 (37)
T ss_dssp             CCCBBCTTSCBSS
T ss_pred             CCCCCCCCCCCCC
T ss_conf             4452158886455


No 6  
>>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} (A:84-186)
Probab=6.57  E-value=2.4e+02  Score=13.38  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=15.9

Q ss_pred             CCEEEEEHHHHHHHHHHCCEE
Q ss_conf             640354112113444310000
Q gi|255764480|r   25 SSTIYHTTALREWSTIWSSEF   45 (57)
Q Consensus        25 sstiyhttalrewstiwssef   45 (57)
                      ..++||-|..+.|..|-.+-.
T Consensus         8 P~~LyHGT~~~~~~~I~~~GL   28 (103)
T 1wfx_A            8 PPILYHGTTEEALPLIXERGI   28 (103)
T ss_dssp             CSEEEECCBGGGHHHHHHHCB
T ss_pred             CCEEEECCCHHHHHHHHHHCC
T ss_conf             866884575999999998570


No 7  
>>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:464-511)
Probab=6.14  E-value=2.6e+02  Score=13.27  Aligned_cols=15  Identities=40%  Similarity=0.837  Sum_probs=11.4

Q ss_pred             CEEEEECCCCEEEEC
Q ss_conf             000232468716319
Q gi|255764480|r   43 SEFFMESEDGTLHFL   57 (57)
Q Consensus        43 seffmesedgtlhfl   57 (57)
                      |-|-+.-|||+..|.
T Consensus         8 sLfhiRhEdGtVqFF   22 (48)
T 2d0o_A            8 SLFHLRHEDGSVQFF   22 (48)
T ss_dssp             SSSEEEETTSCEEEC
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             878899998777762


No 8  
>>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli K12} (A:174-591)
Probab=6.13  E-value=1.4e+02  Score=14.54  Aligned_cols=17  Identities=18%  Similarity=0.372  Sum_probs=10.4

Q ss_pred             CEEEEEC---------CCCCCCCCCH
Q ss_conf             9147503---------2111448242
Q gi|255764480|r    1 MMFWHCD---------SRFAEDKPDI   17 (57)
Q Consensus         1 mmfwhcd---------srfaedkpdi   17 (57)
                      ++||||-         ...++.||-+
T Consensus       215 i~l~HcG~~p~~~a~~~~~~~~k~~l  240 (418)
T 1fui_A          215 IHLINSGSAALDGSCKQRDSEGNPTM  240 (418)
T ss_dssp             EEECCSSCCCGGGGCCEECTTSCEEC
T ss_pred             EEEECCCCHHCCCCCCCCCCCCCCCC
T ss_conf             55422783321554561001478756


No 9  
>>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} (A:467-513)
Probab=6.08  E-value=2.6e+02  Score=13.25  Aligned_cols=15  Identities=33%  Similarity=0.678  Sum_probs=11.3

Q ss_pred             CEEEEECCCCEEEEC
Q ss_conf             000232468716319
Q gi|255764480|r   43 SEFFMESEDGTLHFL   57 (57)
Q Consensus        43 seffmesedgtlhfl   57 (57)
                      |-|-+.-|||+..|.
T Consensus         7 sLfhiRhEdGtVqFF   21 (47)
T 1nbw_A            7 SLFSIRHENGAVEFF   21 (47)
T ss_dssp             SSSEEEETTSCEEEC
T ss_pred             CHHHHHHHHHHHHHC
T ss_conf             989999997455531


No 10 
>>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation, immunopotentiation, thymus, actin; NMR {Bos taurus} (A:)
Probab=6.00  E-value=63  Score=16.13  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=16.3

Q ss_pred             CCCCCHHHHHHHCCCEEEEEH
Q ss_conf             448242335320664035411
Q gi|255764480|r   12 EDKPDIQGFLSYGSSTIYHTT   32 (57)
Q Consensus        12 edkpdiqgflsygsstiyhtt   32 (57)
                      .||||+.+.-++..+.+-+|-
T Consensus         1 sdKpd~~eie~FdksKLKkTE   21 (41)
T 1hj0_A            1 ADKPDLGEINSFDKAKLKKTE   21 (41)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHCCH
T ss_conf             987662310202287631100


Done!