HHsearch alignment for GI: 255764481 and conserved domain: COG1043
>COG1043 LpxA Acyl-[acyl carrier protein].
Probab=100.00 E-value=0 Score=629.48 Aligned_cols=259 Identities=47% Similarity=0.774 Sum_probs=255.4
Q ss_pred CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf 99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r 6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE 85 (271)
Q Consensus 6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~ 85 (271)
T Consensus 2 ~~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~ 81 (260)
T COG1043 2 KMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTR 81 (260)
T ss_pred CCCCCCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 75645762152787882899888833798897198899588343799677077789879111042898754502798427
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf 32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r 86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT 165 (271)
Q Consensus 86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v 165 (271)
T Consensus 82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQF~ 161 (260)
T COG1043 82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFV 161 (260)
T ss_pred EEECCCCEEEEEEEEECCCCCCCEEEEECCCCEEEEEEEEECCCEECCCEEEECCCEEECEEEECCEEEECCCCEEEEEE
T ss_conf 99889975866889861544786159977887898731031344456717996686685407887789974752377788
Q ss_pred EEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 64047435013211223333100010745323344201444288899999999999999727998999999999642589
Q gi|255764481|r 166 RIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSC 245 (271)
Q Consensus 166 ~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~ 245 (271)
T Consensus 162 rIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~ 241 (260)
T COG1043 162 RIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADN 241 (260)
T ss_pred EECCHHEECCCHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCC
T ss_conf 97401123441010367798388528704421213220110699989999999999998018988899999999884278
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999998615888737
Q gi|255764481|r 246 PEVSDIINFIFADRKRPLS 264 (271)
Q Consensus 246 ~~v~~~~~Fi~~s~rRgi~ 264 (271)
T Consensus 242 ~~v~~~~dFi~~s~r~~~r 260 (260)
T COG1043 242 PEVKEFIDFIASSSRGIIR 260 (260)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 6799999998642466669