HHsearch alignment for GI: 255764481 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=100.00 E-value=0 Score=708.06 Aligned_cols=255 Identities=50% Similarity=0.839 Sum_probs=252.8
Q ss_pred ECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 65510888985998898995655988998998898986686891684686553114342232102333122222233222
Q gi|255764481|r 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVG 89 (271)
Q Consensus 10 IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG 89 (271)
T Consensus 1 IHPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG 80 (257)
T TIGR01852 1 IHPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIG 80 (257)
T ss_pred CCCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEEC
T ss_conf 99621878866828985780188878975886885875736896770878998880760767988565014870179988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEEC
Q ss_conf 22221224432111122222212233200001665543310012344322345245532148606523444336506404
Q gi|255764481|r 90 KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169 (271)
Q Consensus 90 ~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~ 169 (271)
T Consensus 81 ~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRIG~ 160 (257)
T TIGR01852 81 DNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRIGR 160 (257)
T ss_pred CCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEEHH
T ss_conf 96569755785066258888899888765720535612436888169813631222799888999778972110133000
Q ss_pred CCEEECCCCCCCCCCCCCHHHHC-CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHH
Q ss_conf 74350132112233331000107-4532334420144428889999999999999972799899999999964-258989
Q gi|255764481|r 170 YAFIGGMTGVVHDVIPYGILNGN-PGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQ-NVSCPE 247 (271)
Q Consensus 170 ~a~ig~gs~V~kdVpp~~~~~G~-pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~-~~~~~~ 247 (271)
T Consensus 161 ~aMigG~s~v~~DvpPY~~~~G~~~a~l~GlN~vGLrR~Gf~~~~i~~i~~ayr~lfr~~~~~~~~~~~v~e~P~~~~~~ 240 (257)
T TIGR01852 161 YAMIGGLSAVSKDVPPYGLVEGNSRAVLRGLNIVGLRRRGFDREEITAIKKAYRLLFRSGLPLQEALQQVAEEPYEDNPE 240 (257)
T ss_pred HHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf 23221200246787761786378753378870132213787989999999998876179989899999998351337757
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999998615888737
Q gi|255764481|r 248 VSDIINFIFADRKRPLS 264 (271)
Q Consensus 248 v~~~~~Fi~~s~rRgi~ 264 (271)
T Consensus 241 v~~~~~FI~~dS~RG~~ 257 (257)
T TIGR01852 241 VKEIVDFIREDSKRGLC 257 (257)
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 99999986076668889