HHsearch alignment for GI: 255764481 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.86 E-value=4.4e-22 Score=158.58 Aligned_cols=133 Identities=22% Similarity=0.326 Sum_probs=88.4
Q ss_pred CCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 86891684686553114342232102333122222233222222212244321111222222122332000016655433
Q gi|255764481|r 49 HCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD 128 (271)
Q Consensus 49 ~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd 128 (271)
T Consensus 14 ~A~viGdV~ig~~~sIw~~aviRgD--------~~~~I~IG~~~nIqD~~viH~~---~------------------~~~ 64 (167)
T cd00710 14 TAVVIGDVIIGDNVFVGPGASIRAD--------EGTPIIIGANVNIQDGVVIHAL---E------------------GYS 64 (167)
T ss_pred CCEEEEEEEECCCCEECCCCEEECC--------CCCCEEECCCCCCCCCEEEECC---C------------------CCC
T ss_conf 9989970899999999888789478--------8887698887434777078225---7------------------667
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC-CCCCCCHH-------HHCCCCCCCCC
Q ss_conf 10012344322345245532148606523444336506404743501321122-33331000-------10745323344
Q gi|255764481|r 129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH-DVIPYGIL-------NGNPGALRGVN 200 (271)
Q Consensus 129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k-dVpp~~~~-------~G~pa~~~~~N 200 (271)
T Consensus 65 ~~IG~~vtIgh~a~ihG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g~~i~~g~~v~~G~~v~~~~pa~~---- 139 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQTQADA---- 139 (167)
T ss_pred EEECCCCEECCCCEECCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEEECCCCCCCCEECCCCEEECCCCHHH----
T ss_conf 49779828989848812049839988988989982-5976998998898884778399989558828836996697----
Q ss_pred CCHHHHCCCCHHHHHHHHHH
Q ss_conf 20144428889999999999
Q gi|255764481|r 201 VVAMRRAGFSRDTIHLIRAV 220 (271)
Q Consensus 201 ~~glkR~g~s~e~i~~l~~a 220 (271)
T Consensus 140 -----~~~lt~~~~~~~~~~ 154 (167)
T cd00710 140 -----LPDVTDSAREFNEKV 154 (167)
T ss_pred -----CCCCCHHHHHHHHHH
T ss_conf -----337999999999999