HHsearch alignment for GI: 255764481 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.77 E-value=1.2e-18 Score=137.00 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=95.9
Q ss_pred CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC----CEEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 756551088898599889899565598899899889898668689168----4686553114342232102333122222
Q gi|255764481|r 8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGK----TKIGDFTKVFPMAVLGGDTQSKYHNFVG 83 (271)
Q Consensus 8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~----t~IG~~~~I~~~a~Ig~~~qd~~~~g~~ 83 (271)
T Consensus 3 P~i~~~afIap~A~v------------iGdV~ig~~~sIw~~aviRgD~~~~I~IG~~~nIqD~~viH~~--------~~ 62 (167)
T cd00710 3 PVIDPSAYVHPTAVV------------IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHAL--------EG 62 (167)
T ss_pred CCCCCCEEECCCCEE------------EEEEEECCCCEECCCCEEECCCCCCEEECCCCCCCCCEEEECC--------CC
T ss_conf 706999398999989------------9708999999998887894788887698887434777078225--------76
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC
Q ss_conf 23322222221224432111122222212233200001665543310012344322345245532148606523444336
Q gi|255764481|r 84 TELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ 163 (271)
Q Consensus 84 ~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~ 163 (271)
T Consensus 63 ~~~~IG~~vtIgh~a~ih-------------------------G~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~ 115 (167)
T cd00710 63 YSVWIGKNVSIAHGAIVH-------------------------GPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-D 115 (167)
T ss_pred CCEEECCCCEECCCCEEC-------------------------CEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-E
T ss_conf 674977982898984881-------------------------2049839988988989982-597699899889888-4
Q ss_pred CEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
Q ss_conf 50640474350132112233331000107453233442014442888999999999999
Q gi|255764481|r 164 FTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYK 222 (271)
Q Consensus 164 ~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr 222 (271)
T Consensus 116 g~~i~~g~~v~~G~~v~~~~pa~~~~~lt~~~~--------~~~~~~~~~y~el~~~y~ 166 (167)
T cd00710 116 GVEIPPGRYVPAGAVITSQTQADALPDVTDSAR--------EFNEKVITVNNELAEGYK 166 (167)
T ss_pred CCCCCCCCEECCCCEEECCCCHHHCCCCCHHHH--------HHHHHHHHHHHHHHHHHC
T ss_conf 778399989558828836996697337999999--------999999999999998743