HHsearch alignment for GI: 255764481 and conserved domain: cd03359

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.88  E-value=2.5e-22  Score=160.14  Aligned_cols=150  Identities=19%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             CCEECCCCEECC--CCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf             989866868916--846865531143422321023331222222332222222122443211112222221223320000
Q gi|255764481|r   43 GVELISHCVVAG--KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL  120 (271)
Q Consensus        43 ~~~I~~~v~I~g--~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~  120 (271)
T Consensus         7 gn~I~k~a~I~G~~nI~IG~~ssI~~~avirGD---------~~~I~IG~~~~I~d~~~I~~~~~~~~-~~~--------   68 (161)
T cd03359           7 GNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGD---------LATVSIGRYCILSEGCVIRPPFKKFS-KGV--------   68 (161)
T ss_pred             CCEECCCCEEECCCCEEECCCCEECCCCEEECC---------CCCEEECCCCEECCCCEEECCCCCCC-CCC--------
T ss_conf             995877629978877599998789999689678---------86549999858889989924644357-788--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCC
Q ss_conf             16655433100123443223452455321486065234443365064047435013211223--3331000107453233
Q gi|255764481|r  121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRG  198 (271)
Q Consensus       121 ~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~  198 (271)
T Consensus        69 ----~~~p~~IGd~v~Ig~~~~i~~-~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i-  142 (161)
T cd03359          69 ----AFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFI-  142 (161)
T ss_pred             ----CCCCCEECCCEEECCCEEEEC-CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEE-
T ss_conf             ----887728489879899828848-89667715579819949979999989988989889989899819985180895-


Q ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             44201444288899999999999999
Q gi|255764481|r  199 VNVVAMRRAGFSRDTIHLIRAVYKQI  224 (271)
Q Consensus       199 ~N~~glkR~g~s~e~i~~l~~ayr~l  224 (271)
T Consensus       143 --------~~l~e~~~~~~~~~~~~y  160 (161)
T cd03359         143 --------GELPECTQELMEEETKEY  160 (161)
T ss_pred             --------EECCHHHHHHHHHHHHHC
T ss_conf             --------769999999999989862