HHsearch alignment for GI: 255764481 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.88 E-value=3.5e-23 Score=165.44 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf 3322222221224432111122---2222122332000016655433100123443223452455321486065234443
Q gi|255764481|r 85 ELLVGKKCVIREGVTINRGTVE---YGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV 161 (271)
Q Consensus 85 ~v~IG~~~~Ire~v~I~~gt~~---~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v 161 (271)
T Consensus 38 ~I~IG~~~nIqd~~~I~~~~~~~~~~g~~~~IG~~~------~i~~g~~ih-------------~~~IG~~~lIg~~a~V 98 (164)
T cd04646 38 PIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNN------VFEVGCKCE-------------ALKIGNNNVFESKSFV 98 (164)
T ss_pred CEEECCCCEECCCEEEECCCCCCCCCCCCEEECCCC------EECCCEEEE-------------CCEECCCCEECCCCEE
T ss_conf 889899966669859941787777899887988998------886781995-------------5597678889689899
Q ss_pred CCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCC
Q ss_conf 365064047435013211223--333100010745323
Q gi|255764481|r 162 HQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALR 197 (271)
Q Consensus 162 ~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~ 197 (271)
T Consensus 99 ~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~ 136 (164)
T cd04646 99 GKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR 136 (164)
T ss_pred CCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEE
T ss_conf 99989999989998989289979299859978874781