Query         gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs    249 out of 6765
Neff          6.6 
Searched_HMMs 39220
Date          Sun May 29 21:17:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764481.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01852 lipid_A_lpxA acyl-[a 100.0       0       0  708.1  15.5  255   10-264     1-257 (257)
  2 COG1043 LpxA Acyl-[acyl carrie 100.0       0       0  629.5  15.7  259    6-264     2-260 (260)
  3 PRK05289 UDP-N-acetylglucosami 100.0       0       0  592.6  20.1  260    6-267     1-260 (261)
  4 cd03351 LbH_UDP-GlcNAc_AT UDP- 100.0       0       0  591.1  19.9  254    9-263     1-254 (254)
  5 PRK12461 UDP-N-acetylglucosami 100.0       0       0  590.1  19.4  255    9-265     2-256 (256)
  6 cd03352 LbH_LpxD UDP-3-O-acyl- 100.0       0       0  344.9  12.6  193    2-197     2-201 (205)
  7 PRK00892 lpxD UDP-3-O-[3-hydro 100.0       0       0  340.3  12.7  193    2-197   111-311 (343)
  8 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 1.4E-45       0  304.9  11.5  193    2-197   114-316 (336)
  9 cd03353 LbH_GlmU_C N-acetyl-gl 100.0 2.6E-39 6.6E-44  266.3  11.2  180    8-196     3-193 (193)
 10 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 8.4E-39 2.1E-43  263.2  13.7  219    2-241   112-337 (338)
 11 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 9.7E-35 2.5E-39  237.7  12.5  225    6-243    97-339 (343)
 12 TIGR01173 glmU UDP-N-acetylglu 100.0 1.2E-34 3.1E-39  237.1   8.7  181    3-207   273-458 (461)
 13 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 2.8E-32 7.2E-37  222.3   9.6  202    7-221   101-323 (336)
 14 PRK09451 glmU bifunctional N-a 100.0 8.5E-32 2.2E-36  219.3  10.1  181    3-207   267-452 (456)
 15 TIGR03308 phn_thr-fam phosphon 100.0 1.8E-29 4.7E-34  204.7  13.4  172    2-220     3-174 (204)
 16 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 1.6E-28 4.2E-33  198.8  11.7  186    6-203    98-301 (338)
 17 COG1207 GlmU N-acetylglucosami 100.0 6.1E-29 1.6E-33  201.5   9.0  181    3-207   270-455 (460)
 18 cd04745 LbH_paaY_like paaY-lik  99.9 6.1E-28 1.6E-32  195.2   8.8  105   85-220    39-145 (155)
 19 cd04650 LbH_FBP Ferripyochelin  99.9 5.8E-28 1.5E-32  195.3   8.5  108   85-223    39-148 (154)
 20 cd04645 LbH_gamma_CA_like Gamm  99.9 7.3E-28 1.9E-32  194.7   8.8  143    9-221     1-145 (153)
 21 TIGR03532 DapD_Ac 2,3,4,5-tetr  99.9 4.9E-25 1.3E-29  177.0  10.4  127    6-197    85-211 (231)
 22 PRK13627 carnitine operon prot  99.9 2.3E-25 5.8E-30  179.1   7.6  146    5-220     8-155 (196)
 23 TIGR03570 NeuD_NnaD sugar O-ac  99.9 2.6E-25 6.7E-30  178.8   7.8  102   86-194   100-201 (201)
 24 cd03358 LbH_WxcM_N_like WcxM-l  99.9 1.4E-24 3.5E-29  174.2   8.7  119   22-198     1-119 (119)
 25 cd03352 LbH_LpxD UDP-3-O-acyl-  99.9 2.8E-24   7E-29  172.4   9.9  160   19-190     1-178 (205)
 26 PRK05289 UDP-N-acetylglucosami  99.9   7E-24 1.8E-28  169.8  10.7  163    1-177     2-188 (261)
 27 cd05636 LbH_G1P_TT_C_like Puta  99.9 6.5E-24 1.7E-28  170.0  10.3  152    6-180     4-163 (163)
 28 cd03350 LbH_THP_succinylT 2,3,  99.9 9.3E-24 2.4E-28  169.1  10.2  119    8-191     2-120 (139)
 29 cd03360 LbH_AT_putative Putati  99.9   2E-24   5E-29  173.3   6.5   84  110-193   114-197 (197)
 30 cd03351 LbH_UDP-GlcNAc_AT UDP-  99.9   1E-23 2.6E-28  168.8  10.0  162    2-177    12-185 (254)
 31 COG0663 PaaY Carbonic anhydras  99.9 6.1E-24 1.5E-28  170.2   8.0  159    5-224     9-170 (176)
 32 PRK12461 UDP-N-acetylglucosami  99.9 1.6E-23   4E-28  167.7   9.2  161    2-177    13-185 (256)
 33 cd03353 LbH_GlmU_C N-acetyl-gl  99.9 6.3E-23 1.6E-27  163.8  10.1  159    2-176    16-190 (193)
 34 cd04646 LbH_Dynactin_6 Dynacti  99.9 3.5E-23   9E-28  165.4   6.5   94   85-197    38-136 (164)
 35 cd03359 LbH_Dynactin_5 Dynacti  99.9 2.5E-22 6.3E-27  160.1   9.0  150   43-224     7-160 (161)
 36 cd00710 LbH_gamma_CA Gamma car  99.9 4.4E-22 1.1E-26  158.6   6.9  133   49-220    14-154 (167)
 37 TIGR01852 lipid_A_lpxA acyl-[a  99.9 9.3E-22 2.4E-26  156.5   8.2  227    2-253    11-249 (257)
 38 cd03349 LbH_XAT Xenobiotic acy  99.9 3.2E-21 8.2E-26  153.2   9.1   68  145-220    72-139 (145)
 39 cd04646 LbH_Dynactin_6 Dynacti  99.8 1.3E-21 3.3E-26  155.7   6.4  157    9-187     1-160 (164)
 40 TIGR01173 glmU UDP-N-acetylglu  99.8 1.8E-20 4.7E-25  148.4   8.5  146    9-182   260-418 (461)
 41 cd03357 LbH_MAT_GAT Maltose O-  99.8 9.9E-21 2.5E-25  150.1   6.2   56  142-197   114-169 (169)
 42 PRK10502 putative colanic acid  99.8 4.2E-20 1.1E-24  146.2   9.3  122   19-198    52-177 (179)
 43 PRK09527 lacA galactoside O-ac  99.8 2.2E-20 5.7E-25  147.9   7.3  124   21-197    57-182 (203)
 44 PRK09451 glmU bifunctional N-a  99.8 4.9E-20 1.2E-24  145.8   9.0  143    9-179   254-409 (456)
 45 cd04647 LbH_MAT_like Maltose O  99.8 6.1E-21 1.5E-25  151.5   3.3   85  113-197    24-109 (109)
 46 PRK09677 putative lipopolysacc  99.8 2.9E-20 7.5E-25  147.2   6.6   63  143-212   127-189 (192)
 47 COG1043 LpxA Acyl-[acyl carrie  99.8 6.3E-20 1.6E-24  145.1   7.8  162    2-177    16-189 (260)
 48 cd04645 LbH_gamma_CA_like Gamm  99.8 1.4E-19 3.6E-24  142.9   9.6  134    3-188     1-138 (153)
 49 cd05636 LbH_G1P_TT_C_like Puta  99.8 1.3E-19 3.4E-24  143.1   8.0  155    2-161     6-162 (163)
 50 TIGR02287 PaaY phenylacetic ac  99.8   3E-20 7.6E-25  147.1   4.3  151    5-225     6-161 (193)
 51 cd05825 LbH_wcaF_like wcaF-lik  99.8 1.4E-19 3.6E-24  142.9   4.3   55  143-197    53-107 (107)
 52 cd04745 LbH_paaY_like paaY-lik  99.8 1.1E-18 2.9E-23  137.3   8.7   62  127-188    77-139 (155)
 53 cd00710 LbH_gamma_CA Gamma car  99.8 1.2E-18 3.2E-23  137.0   8.3  160    8-222     3-166 (167)
 54 cd04650 LbH_FBP Ferripyochelin  99.8 3.2E-18   8E-23  134.5   9.4  134    3-188     2-139 (154)
 55 PRK10092 maltose O-acetyltrans  99.7 5.9E-19 1.5E-23  139.0   3.5   56  142-197   125-180 (183)
 56 COG1207 GlmU N-acetylglucosami  99.7 2.3E-17 5.8E-22  129.1   8.7  152    8-182   256-415 (460)
 57 cd03354 LbH_SAT Serine acetylt  99.7 3.6E-18 9.1E-23  134.1   4.1   49  145-193    53-101 (101)
 58 PRK13627 carnitine operon prot  99.7 3.7E-17 9.5E-22  127.8   7.6  166    2-232    11-177 (196)
 59 COG0110 WbbJ Acetyltransferase  99.7 4.3E-17 1.1E-21  127.3   7.4  120   85-217    67-187 (190)
 60 KOG4750 consensus               99.7   2E-17 5.2E-22  129.4   3.6  106   86-198   135-252 (269)
 61 cd03359 LbH_Dynactin_5 Dynacti  99.7   3E-16 7.6E-21  122.1   9.3  125   37-187    21-149 (161)
 62 PRK11132 cysE serine acetyltra  99.6 5.3E-16 1.3E-20  120.6   6.1   54  146-199   193-246 (273)
 63 TIGR01172 cysE serine O-acetyl  99.6 3.7E-16 9.3E-21  121.6   5.2   50  146-195   114-163 (163)
 64 COG1045 CysE Serine acetyltran  99.6 1.2E-15 3.1E-20  118.3   6.5   53  146-198   119-171 (194)
 65 PRK10191 putative colanic acid  99.6 1.5E-15 3.9E-20  117.6   3.8   53  145-197    91-143 (146)
 66 COG0663 PaaY Carbonic anhydras  99.6 9.8E-15 2.5E-19  112.6   7.6  133    2-183    12-145 (176)
 67 COG2171 DapD Tetrahydrodipicol  99.4 5.2E-13 1.3E-17  101.8   7.6  119    8-191   109-227 (271)
 68 TIGR03570 NeuD_NnaD sugar O-ac  99.4 5.1E-13 1.3E-17  101.9   7.2   82    7-100    87-168 (201)
 69 cd05824 LbH_M1P_guanylylT_C Ma  99.4   4E-13   1E-17  102.6   6.4   77   16-94      2-78  (80)
 70 cd03360 LbH_AT_putative Putati  99.4   1E-12 2.6E-17  100.0   5.7  103    7-128    84-186 (197)
 71 cd00208 LbetaH Left-handed par  99.3 3.8E-12 9.8E-17   96.4   6.9   35  146-180    44-78  (78)
 72 PRK11830 dapD 2,3,4,5-tetrahyd  99.3   1E-11 2.6E-16   93.8   6.7   62   10-72     99-160 (265)
 73 cd03350 LbH_THP_succinylT 2,3,  99.3 1.9E-11 4.9E-16   92.0   8.1   40  147-189    94-133 (139)
 74 cd03358 LbH_WxcM_N_like WcxM-l  99.2 1.8E-11 4.6E-16   92.2   6.7   54    4-57      1-54  (119)
 75 KOG1461 consensus               99.2   1E-11 2.6E-16   93.7   4.4  100   22-143   318-417 (673)
 76 cd00208 LbetaH Left-handed par  99.2   7E-11 1.8E-15   88.5   7.0   34   39-72      2-35  (78)
 77 TIGR03308 phn_thr-fam phosphon  99.1 2.8E-10 7.1E-15   84.8   8.5  181    2-237    20-202 (204)
 78 TIGR03532 DapD_Ac 2,3,4,5-tetr  99.1 2.8E-10 7.2E-15   84.8   7.6   72  112-183   100-179 (231)
 79 PRK09677 putative lipopolysacc  99.1 3.2E-10 8.1E-15   84.4   7.8  133   19-181    43-182 (192)
 80 cd05635 LbH_unknown Uncharacte  99.1 3.5E-10 8.8E-15   84.2   7.0   54   12-65      1-57  (101)
 81 cd05824 LbH_M1P_guanylylT_C Ma  99.1 3.9E-10   1E-14   83.8   6.8   48   22-70      2-49  (80)
 82 PRK11830 dapD 2,3,4,5-tetrahyd  99.1 2.1E-10 5.4E-15   85.5   4.9   81  112-192   127-231 (265)
 83 COG1208 GCD1 Nucleoside-diphos  99.1 6.9E-10 1.8E-14   82.3   7.5   57   14-71    256-312 (358)
 84 KOG1461 consensus               99.0 4.2E-10 1.1E-14   83.6   6.4  104    6-125   320-423 (673)
 85 PRK05293 glgC glucose-1-phosph  99.0 7.2E-10 1.8E-14   82.2   7.1   12   11-22    280-291 (381)
 86 PRK10502 putative colanic acid  99.0 1.1E-09 2.8E-14   81.0   7.1   55    2-56     53-111 (179)
 87 PRK05293 glgC glucose-1-phosph  99.0 1.7E-09 4.4E-14   79.8   7.8   16   55-70    308-323 (381)
 88 KOG4042 consensus               99.0 4.2E-10 1.1E-14   83.7   4.1  164    8-231     9-181 (190)
 89 cd03354 LbH_SAT Serine acetylt  99.0 1.8E-09 4.6E-14   79.7   7.2   43  131-175    57-99  (101)
 90 cd04647 LbH_MAT_like Maltose O  99.0 1.2E-09 3.2E-14   80.7   6.2   46  128-175    58-103 (109)
 91 KOG4042 consensus               99.0 8.1E-10 2.1E-14   81.9   4.6   76   40-124    11-92  (190)
 92 KOG3121 consensus               98.9   1E-09 2.6E-14   81.2   5.0  139   36-223    32-175 (184)
 93 TIGR02287 PaaY phenylacetic ac  98.9 2.4E-09 6.1E-14   78.9   6.8  130    4-182    11-141 (193)
 94 KOG1460 consensus               98.9 1.6E-09 4.1E-14   80.0   5.8   69    4-73    285-358 (407)
 95 cd05635 LbH_unknown Uncharacte  98.9 3.8E-09 9.7E-14   77.7   7.3   85   35-160     9-93  (101)
 96 PRK10092 maltose O-acetyltrans  98.9 2.2E-09 5.6E-14   79.2   5.7  113   25-176    59-175 (183)
 97 cd05787 LbH_eIF2B_epsilon eIF-  98.9   7E-09 1.8E-13   76.0   7.9   47   22-70      2-48  (79)
 98 PRK00844 glgC glucose-1-phosph  98.9 6.3E-09 1.6E-13   76.3   7.2   55  128-184   331-385 (409)
 99 COG1208 GCD1 Nucleoside-diphos  98.9 3.8E-09 9.7E-14   77.7   6.0  105   28-179   253-357 (358)
100 cd05787 LbH_eIF2B_epsilon eIF-  98.8 8.4E-09 2.1E-13   75.5   6.2   64    4-70      2-65  (79)
101 TIGR01172 cysE serine O-acetyl  98.8 6.8E-09 1.7E-13   76.1   4.9   71   49-165    81-151 (163)
102 TIGR02353 NRPS_term_dom non-ri  98.8 4.2E-09 1.1E-13   77.4   3.0   72    2-73    119-203 (719)
103 PRK03282 consensus              98.8 2.8E-08 7.2E-13   72.2   7.0   54  140-195   329-384 (406)
104 PRK09527 lacA galactoside O-ac  98.7 2.3E-08 5.9E-13   72.8   6.3   46  138-185   141-187 (203)
105 cd03357 LbH_MAT_GAT Maltose O-  98.7 3.6E-08 9.1E-13   71.6   6.9  117   21-176    44-164 (169)
106 TIGR00965 dapD 2,3,4,5-tetrahy  98.7 9.2E-09 2.3E-13   75.3   3.3  114   10-153   106-219 (275)
107 cd03356 LbH_G1P_AT_C_like Left  98.7 6.1E-08 1.6E-12   70.1   7.5   47   22-70      2-48  (79)
108 cd03349 LbH_XAT Xenobiotic acy  98.7 6.3E-08 1.6E-12   70.1   7.3   51  129-181    74-125 (145)
109 cd05825 LbH_wcaF_like wcaF-lik  98.7 2.6E-08 6.6E-13   72.5   5.3   47  128-176    56-102 (107)
110 cd03356 LbH_G1P_AT_C_like Left  98.7 3.3E-08 8.5E-13   71.8   5.7   30    4-34      2-31  (79)
111 PRK10191 putative colanic acid  98.7 4.5E-08 1.1E-12   71.0   6.1   43  131-175    95-137 (146)
112 TIGR02353 NRPS_term_dom non-ri  98.7 2.1E-08 5.3E-13   73.1   4.4   84  111-194   622-719 (719)
113 cd04652 LbH_eIF2B_gamma_C eIF-  98.7 1.2E-07   3E-12   68.4   7.7   29   23-52      3-31  (81)
114 PRK04928 consensus              98.6 1.1E-07 2.7E-12   68.6   7.0   13  167-179   364-376 (405)
115 PRK02862 glgC glucose-1-phosph  98.6 1.9E-07 4.8E-12   67.1   7.6   33   37-71    308-340 (429)
116 cd04652 LbH_eIF2B_gamma_C eIF-  98.6 9.5E-08 2.4E-12   68.9   5.9   30    4-34      2-31  (81)
117 cd04651 LbH_G1P_AT_C Glucose-1  98.5 2.2E-07 5.7E-12   66.6   6.5   69    2-74     13-81  (104)
118 COG1045 CysE Serine acetyltran  98.5 1.6E-07 4.2E-12   67.4   5.8   38  130-167   121-158 (194)
119 cd04649 LbH_THP_succinylT_puta  98.5 2.3E-07 5.9E-12   66.5   6.2   63    8-72      2-64  (147)
120 PRK02862 glgC glucose-1-phosph  98.4 6.7E-07 1.7E-11   63.6   6.9   16  126-141   381-396 (429)
121 PRK03282 consensus              98.4 1.3E-06 3.3E-11   61.8   7.8   48  130-179   331-378 (406)
122 PRK00844 glgC glucose-1-phosph  98.4 1.4E-06 3.5E-11   61.7   7.8   38  143-182   334-371 (409)
123 PRK03701 consensus              98.4 5.1E-07 1.3E-11   64.4   5.1   45  142-188   349-395 (431)
124 KOG1460 consensus               98.3 8.8E-07 2.2E-11   62.9   5.5   57    7-70    282-338 (407)
125 PRK01884 consensus              98.3 1.4E-06 3.5E-11   61.7   5.9   59  128-188   329-393 (435)
126 cd04651 LbH_G1P_AT_C Glucose-1  98.3 2.1E-06 5.3E-11   60.6   6.7   57   10-70      4-60  (104)
127 PRK00725 glgC glucose-1-phosph  98.3 1.1E-06 2.8E-11   62.3   5.0   40  141-182   348-387 (431)
128 PRK04928 consensus              98.3 4.9E-06 1.3E-10   58.2   7.7   12  162-173   365-376 (405)
129 KOG1322 consensus               98.3 1.4E-06 3.6E-11   61.6   4.9   46    3-48    254-299 (371)
130 COG0110 WbbJ Acetyltransferase  98.3 4.5E-06 1.1E-10   58.5   7.4  140   24-182    30-177 (190)
131 COG2171 DapD Tetrahydrodipicol  98.2 1.9E-06 4.8E-11   60.8   5.2   67  114-180   124-198 (271)
132 TIGR00965 dapD 2,3,4,5-tetrahy  98.2 1.6E-06   4E-11   61.3   4.3  114   43-194   103-241 (275)
133 KOG1462 consensus               98.2 1.6E-06   4E-11   61.4   4.2   16  165-180   386-401 (433)
134 PRK11132 cysE serine acetyltra  98.2 3.5E-06   9E-11   59.1   5.9   44  130-175   195-238 (273)
135 KOG1322 consensus               98.0 7.9E-06   2E-10   56.9   5.2   12  128-139   334-345 (371)
136 PRK01884 consensus              98.0 1.5E-05 3.7E-10   55.3   6.5   52  129-182   346-397 (435)
137 cd04649 LbH_THP_succinylT_puta  97.9 4.3E-05 1.1E-09   52.3   6.8   34  147-182    74-107 (147)
138 KOG1462 consensus               97.8 3.2E-05 8.2E-10   53.1   5.4   44  116-179   368-411 (433)
139 KOG4750 consensus               97.8 1.6E-05 4.1E-10   55.0   3.8   35  130-164   202-236 (269)
140 PRK03701 consensus              97.8 4.9E-05 1.3E-09   52.0   5.7   55  129-185   348-402 (431)
141 PRK00725 glgC glucose-1-phosph  97.8 5.6E-05 1.4E-09   51.6   5.5   70  112-185   333-402 (431)
142 TIGR01208 rmlA_long glucose-1-  97.7 6.3E-05 1.6E-09   51.3   5.2   51   32-95    255-306 (361)
143 TIGR01208 rmlA_long glucose-1-  97.7 4.9E-05 1.2E-09   52.0   4.5   34   14-47    255-288 (361)
144 TIGR02091 glgC glucose-1-phosp  97.6 0.00011 2.9E-09   49.7   4.8   12    7-18    315-326 (421)
145 KOG3121 consensus               97.6 0.00011 2.7E-09   49.9   4.4  145   49-230    33-178 (184)
146 COG0448 GlgC ADP-glucose pyrop  97.4 0.00075 1.9E-08   44.6   7.3   12   37-48    296-307 (393)
147 COG4801 Predicted acyltransfer  97.4 0.00033 8.5E-09   46.8   5.0   49   42-96     55-103 (277)
148 COG4801 Predicted acyltransfer  97.2  0.0014 3.5E-08   42.9   6.9   22  147-168   167-188 (277)
149 TIGR03536 DapD_gpp 2,3,4,5-tet  96.9  0.0017 4.2E-08   42.4   4.7   33  147-181   251-283 (341)
150 TIGR03535 DapD_actino 2,3,4,5-  96.8  0.0021 5.4E-08   41.7   4.8   23   36-58    152-174 (319)
151 TIGR03536 DapD_gpp 2,3,4,5-tet  96.8  0.0031 7.9E-08   40.7   5.6   86   34-124   175-264 (341)
152 TIGR03535 DapD_actino 2,3,4,5-  96.7  0.0049 1.2E-07   39.5   5.7   33  147-181   226-258 (319)
153 TIGR02092 glgD glucose-1-phosp  96.3  0.0039   1E-07   40.1   3.3   10   61-70    335-344 (383)
154 TIGR02092 glgD glucose-1-phosp  95.0   0.067 1.7E-06   32.4   5.5   15  117-131   336-350 (383)
155 PRK13412 fkp bifunctional fuco  74.8     5.2 0.00013   20.6   4.1   48    6-54    324-371 (974)
156 pfam03961 DUF342 Protein of un  74.5     7.3 0.00019   19.6   8.1   27   44-70    175-201 (450)
157 pfam10302 DUF2407 Putative mem  71.7     8.3 0.00021   19.3   4.5   38  204-241   125-167 (252)
158 pfam00427 PBS_linker_poly Phyc  70.5     9.1 0.00023   19.0   4.7   53  207-259     3-58  (131)
159 cd04765 HTH_MlrA-like_sg2 Heli  63.4      13 0.00032   18.2   6.3   38  206-243    36-73  (99)
160 pfam07637 PSD5 Protein of unkn  63.3      13 0.00032   18.1   4.7   42  206-247    16-57  (64)
161 cd01999 Argininosuccinate_Synt  58.3     8.2 0.00021   19.3   2.4   61  201-261   260-331 (385)
162 smart00335 ANX Annexin repeats  55.1      17 0.00044   17.3   4.0   27  209-237    14-40  (53)
163 PRK00509 argininosuccinate syn  55.0      16 0.00042   17.4   3.5   61  201-261   263-334 (398)
164 COG5126 FRQ1 Ca2+-binding prot  52.7      19 0.00048   17.0   5.6   52  204-255     9-65  (160)
165 cd01105 HTH_GlnR-like Helix-Tu  50.4      21 0.00053   16.8   5.6   46  206-252    37-82  (88)
166 TIGR00423 TIGR00423 conserved   46.9      17 0.00043   17.3   2.5   50  207-266    96-149 (331)
167 pfam00764 Arginosuc_synth Argi  44.7      25 0.00064   16.3   3.7   61  201-261   257-328 (389)
168 TIGR00032 argG argininosuccina  44.5      25 0.00065   16.2   4.3   60  202-261   283-355 (420)
169 PRK04527 argininosuccinate syn  44.4      24 0.00062   16.4   3.0   61  201-261   264-335 (397)
170 PRK13820 argininosuccinate syn  43.0      27 0.00068   16.1   4.1   61  201-261   261-332 (395)
171 cd07316 terB_like_DjlA N-termi  42.9      27 0.00069   16.1   6.5   54  204-257    28-82  (106)
172 PRK13340 alanine racemase; Rev  42.1      18 0.00046   17.1   2.1   35  190-224   153-188 (404)
173 TIGR02044 CueR Cu(I)-responsiv  40.2      30 0.00076   15.8   3.2   56  199-254    47-104 (127)
174 pfam03586 Herpes_UL36 Herpesvi  40.1      29 0.00073   15.9   2.8   71  184-258    96-166 (253)
175 PRK09430 djlA Dna-J like membr  39.4      31 0.00078   15.7   6.9   13  214-226   216-228 (269)
176 TIGR02120 GspF general secreti  39.2      31 0.00078   15.7   6.1   55  203-258    67-121 (414)
177 cd04396 RhoGAP_fSAC7_BAG7 RhoG  37.6      20  0.0005   16.9   1.7   49  175-223    24-72  (225)
178 PRK04156 gltX glutamyl-tRNA sy  37.5      22 0.00055   16.7   1.8   50  164-217   325-379 (566)
179 pfam00191 Annexin Annexin. Thi  36.8      34 0.00086   15.5   4.0   27  209-237    27-53  (66)
180 pfam03556 DUF298 Domain of unk  36.2      34 0.00087   15.4   5.9   49  216-264    21-78  (117)
181 pfam01244 Peptidase_M19 Membra  34.7      35  0.0009   15.3   2.6   23  202-224   290-314 (316)
182 PTZ00184 calmodulin; Provision  34.5      36 0.00093   15.3   3.3   47  215-261    84-135 (149)
183 pfam07319 DnaI_N Primosomal pr  34.4      37 0.00093   15.2   4.4   36  217-253     4-39  (93)
184 cd04781 HTH_MerR-like_sg6 Heli  34.2      20  0.0005   16.9   1.2   52  204-255    52-103 (120)
185 TIGR02589 cas_Csd2 CRISPR-asso  33.3      38 0.00097   15.1   3.0   43  180-227   190-233 (307)
186 PRK05347 glutaminyl-tRNA synth  32.8      26 0.00067   16.1   1.7   15  200-214   295-309 (556)
187 TIGR01270 Trp_5_monoox tryptop  32.7      30 0.00078   15.7   2.0   42  229-270   238-286 (499)
188 TIGR02225 recomb_XerD tyrosine  30.8      42  0.0011   14.9   4.0   61  202-262    53-127 (305)
189 COG3945 Uncharacterized conser  30.3      42  0.0011   14.9   2.4   17  209-225    92-108 (189)
190 KOG0819 consensus               29.8      44  0.0011   14.8   3.5   17  210-226   119-135 (321)
191 TIGR00463 gltX_arch glutamyl-t  29.5      29 0.00074   15.9   1.5   60  158-219   326-385 (600)
192 cd04379 RhoGAP_SYD1 RhoGAP_SYD  29.5      28 0.00071   16.0   1.3   43  180-222    15-57  (207)
193 TIGR02568 LcrE type III secret  29.5      44  0.0011   14.7   5.7   65  192-257   147-219 (265)
194 PRK05665 amidotransferase; Pro  28.2      47  0.0012   14.6   3.3   58  200-258   178-236 (240)
195 TIGR02160 PA_CoA_Oxy5 phenylac  27.8      34 0.00086   15.5   1.5   56  160-225   115-182 (371)
196 COG1422 Predicted membrane pro  27.4      48  0.0012   14.5   3.1   40  200-241    67-106 (201)
197 TIGR02137 HSK-PSP phosphoserin  26.7      27 0.00069   16.1   0.9   39  176-221    29-67  (203)
198 COG0137 ArgG Argininosuccinate  26.6      50  0.0013   14.4   4.2   60  201-260   265-336 (403)
199 pfam05476 PET122 PET122. The n  25.8      51  0.0013   14.3   5.7   57  198-257   206-262 (267)
200 cd06825 PLPDE_III_VanT Type II  25.6      51  0.0013   14.3   2.1   24  198-222   120-143 (368)
201 pfam12098 DUF3574 Protein of u  25.4      52  0.0013   14.3   2.2   19  210-228    73-91  (104)
202 cd04382 RhoGAP_MgcRacGAP RhoGA  25.2      34 0.00087   15.4   1.2   25  197-221    31-55  (193)
203 KOG1148 consensus               24.8      44  0.0011   14.8   1.7   44  176-219   482-528 (764)
204 pfam04282 DUF438 Family of unk  24.3      55  0.0014   14.2   2.8   46  210-255    11-58  (79)
205 COG0484 DnaJ DnaJ-class molecu  23.8      56  0.0014   14.1   2.8   16  209-224   336-351 (371)
206 TIGR00243 Dxr 1-deoxy-D-xylulo  23.7      37 0.00094   15.2   1.1   82  152-236   249-342 (406)
207 TIGR02143 trmA_only tRNA (urac  23.1      22 0.00056   16.6  -0.1   36  206-241   297-334 (361)
208 cd03557 L-arabinose_isomerase   23.0      30 0.00076   15.8   0.5   95  147-241   152-250 (484)
209 cd07313 terB_like_2 tellurium   22.8      58  0.0015   14.0   4.6   49  209-257    16-65  (104)
210 PTZ00183 centrin; Provisional   22.5      59  0.0015   13.9   5.3   19  206-224    18-36  (168)
211 cd04769 HTH_MerR2 Helix-Turn-H  22.2      60  0.0015   13.9   2.7   19  203-221    51-69  (116)
212 CHL00091 apcE phycobillisome l  22.2      60  0.0015   13.9   5.2   50  209-258   721-775 (886)
213 TIGR00635 ruvB Holliday juncti  22.1      60  0.0015   13.9   5.7   76  165-247   112-196 (305)
214 TIGR01926 peroxid_rel uncharac  21.5      56  0.0014   14.1   1.7   37  190-227   128-164 (179)
215 cd04408 RhoGAP_GMIP RhoGAP_GMI  21.4      48  0.0012   14.5   1.3   26  196-221    29-54  (200)
216 pfam09675 Chlamy_scaf Chlamydi  20.0      67  0.0017   13.6   2.2   44  214-259    30-73  (107)

No 1  
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137   This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=100.00  E-value=0  Score=708.06  Aligned_cols=255  Identities=50%  Similarity=0.839  Sum_probs=252.8

Q ss_pred             ECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             65510888985998898995655988998998898986686891684686553114342232102333122222233222
Q gi|255764481|r   10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVG   89 (271)
Q Consensus        10 IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG   89 (271)
                      |||||+|+|+|+||+||+|||||+|+++|+||+||+|+|||+|.|.|+||+||+|||+|+||++|||+||+||.|+|+||
T Consensus         1 IHPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG   80 (257)
T TIGR01852         1 IHPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIG   80 (257)
T ss_pred             CCCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEEC
T ss_conf             99621878866828985780188878975886885875736896770878998880760767988565014870179988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEEC
Q ss_conf             22221224432111122222212233200001665543310012344322345245532148606523444336506404
Q gi|255764481|r   90 KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK  169 (271)
Q Consensus        90 ~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~  169 (271)
                      |||+|||+||||+||.++++.|+||||||||+|+||||||.|||+|+|+|+|+|||||+|||+|+|||++.||||||||+
T Consensus        81 ~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRIG~  160 (257)
T TIGR01852        81 DNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRIGR  160 (257)
T ss_pred             CCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEEHH
T ss_conf             96569755785066258888899888765720535612436888169813631222799888999778972110133000


Q ss_pred             CCEEECCCCCCCCCCCCCHHHHC-CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHH
Q ss_conf             74350132112233331000107-4532334420144428889999999999999972799899999999964-258989
Q gi|255764481|r  170 YAFIGGMTGVVHDVIPYGILNGN-PGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQ-NVSCPE  247 (271)
Q Consensus       170 ~a~ig~gs~V~kdVpp~~~~~G~-pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~-~~~~~~  247 (271)
                      ||||||+|.|.||||||+++.|+ ||+++|||++||||+||++|+|..|++|||+|||+.++++|+++++.|+ ..++|+
T Consensus       161 ~aMigG~s~v~~DvpPY~~~~G~~~a~l~GlN~vGLrR~Gf~~~~i~~i~~ayr~lfr~~~~~~~~~~~v~e~P~~~~~~  240 (257)
T TIGR01852       161 YAMIGGLSAVSKDVPPYGLVEGNSRAVLRGLNIVGLRRRGFDREEITAIKKAYRLLFRSGLPLQEALQQVAEEPYEDNPE  240 (257)
T ss_pred             HHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf             23221200246787761786378753378870132213787989999999998876179989899999998351337757


Q ss_pred             HHHHHHHHHHCCCCCCC
Q ss_conf             99999998615888737
Q gi|255764481|r  248 VSDIINFIFADRKRPLS  264 (271)
Q Consensus       248 v~~~~~Fi~~s~rRgi~  264 (271)
                      +++|++||+++++||||
T Consensus       241 v~~~~~FI~~dS~RG~~  257 (257)
T TIGR01852       241 VKEIVDFIREDSKRGLC  257 (257)
T ss_pred             HHHHHHHHCCCCCCCCC
T ss_conf             99999986076668889


No 2  
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=100.00  E-value=0  Score=629.48  Aligned_cols=259  Identities=47%  Similarity=0.774  Sum_probs=255.4

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      +++.|||||+|+|+|+||+||+|||||+|+++|+||++|+|++||+|.|.|+||++|+|||+|+||.+|||+||+|++|+
T Consensus         2 ~~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~   81 (260)
T COG1043           2 KMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTR   81 (260)
T ss_pred             CCCCCCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEE
T ss_conf             75645762152787882899888833798897198899588343799677077789879111042898754502798427


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                      ++||+||+|||+||||+||.++++.|+||||||||+|+||||||.|||+|+++|+++|+|||+|||+|+||+.+.|||||
T Consensus        82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQF~  161 (260)
T COG1043          82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFV  161 (260)
T ss_pred             EEECCCCEEEEEEEEECCCCCCCEEEEECCCCEEEEEEEEECCCEECCCEEEECCCEEECEEEECCEEEECCCCEEEEEE
T ss_conf             99889975866889861544786159977887898731031344456717996686685407887789974752377788


Q ss_pred             EEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             64047435013211223333100010745323344201444288899999999999999727998999999999642589
Q gi|255764481|r  166 RIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSC  245 (271)
Q Consensus       166 ~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~  245 (271)
                      |||++||+|++|.|.+|||||+++.||||+++|||++||||+||++|+|.+|++|||+|||++++++|++++++++..++
T Consensus       162 rIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~  241 (260)
T COG1043         162 RIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADN  241 (260)
T ss_pred             EECCHHEECCCHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCC
T ss_conf             97401123441010367798388528704421213220110699989999999999998018988899999999884278


Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             8999999998615888737
Q gi|255764481|r  246 PEVSDIINFIFADRKRPLS  264 (271)
Q Consensus       246 ~~v~~~~~Fi~~s~rRgi~  264 (271)
                      |++++|+|||++|+||.+|
T Consensus       242 ~~v~~~~dFi~~s~r~~~r  260 (260)
T COG1043         242 PEVKEFIDFIASSSRGIIR  260 (260)
T ss_pred             HHHHHHHHHHHHCCCCCCC
T ss_conf             6799999998642466669


No 3  
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00  E-value=0  Score=592.57  Aligned_cols=260  Identities=47%  Similarity=0.779  Sum_probs=253.2

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      +++.|||||+|+|+|+||+||+|||||+|+++|+||++|+|++|++|.++++||++|.|+|+|+||++|||++|.+++++
T Consensus         1 ~~~~IHptAiI~~~A~IG~~v~Igp~~vIg~~v~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~   80 (261)
T PRK05289          1 SMAKIHPTAIVEPGAEIGENVEIGPFCVIGPDVVIGDGTEIGSHVVIDGHTTIGKNNRIFPFASIGEEPQDLKYKGEPTR   80 (261)
T ss_pred             CCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCCCCCCCCCCCCCCCCCCCE
T ss_conf             95740898898998999998999999999999999999999799689189888988345247533778766660698536


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                      |+|||+|.|||+|||||||..+++.|+||++|+||+++||+|||+||++|+++|++.|+|||+|||+|+||++++||||+
T Consensus        81 v~IGd~~~Ire~vtI~rgT~~~~g~T~IG~~~~im~~vhIaHd~~IG~~~iian~~~laG~v~Igd~v~iGg~~~v~q~v  160 (261)
T PRK05289         81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNNVILANNATLAGHVEVGDYAIIGGLSGVHQFV  160 (261)
T ss_pred             EEECCCCEECCCCEECCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCEECCCEEECCCEEECCCEEECCCCEECCCC
T ss_conf             99899778985414436610588644988885440036434455127871654305664607988970997615664883


Q ss_pred             EEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             64047435013211223333100010745323344201444288899999999999999727998999999999642589
Q gi|255764481|r  166 RIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSC  245 (271)
Q Consensus       166 ~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~  245 (271)
                      +||++|||||+|+|+||||||+++.|+|||++|||++||||+|||+|+|++||+|||+||+++++++|+++++++ ..++
T Consensus       161 ~IG~~a~vgagS~V~kDVpp~~~v~G~PAr~~glN~vGL~R~g~s~~~i~~i~~ayr~l~~~~~~~~~~~~~~~~-~~~~  239 (261)
T PRK05289        161 RIGAHAMVGGMSAVVQDVPPYVLAEGNPARLRGLNIVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAE-LADS  239 (261)
T ss_pred             EECCCEEECCCCEECCCCCCCCEEECCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-CCCC
T ss_conf             989871999763654247998678468356886128888677999999999999999997279989999999985-3799


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8999999998615888737876
Q gi|255764481|r  246 PEVSDIINFIFADRKRPLSNWG  267 (271)
Q Consensus       246 ~~v~~~~~Fi~~s~rRgi~~~~  267 (271)
                      ||+++|++||++| +||+|.|.
T Consensus       240 ~~v~~~~~Fi~~s-~RGi~~~~  260 (261)
T PRK05289        240 PEVKEILDFIEAS-SRGIIRPR  260 (261)
T ss_pred             HHHHHHHHHHHCC-CCCCCCCC
T ss_conf             8999999999618-88522789


No 4  
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00  E-value=0  Score=591.14  Aligned_cols=254  Identities=44%  Similarity=0.776  Sum_probs=249.7

Q ss_pred             EECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             56551088898599889899565598899899889898668689168468655311434223210233312222223322
Q gi|255764481|r    9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLV   88 (271)
Q Consensus         9 ~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~I   88 (271)
                      ||||||+|+|+|+||+||+|||||+|+++|+||++|+|++||+|.++++||++|.|+|+|+||++|||++|.+++++++|
T Consensus         1 ~IHptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~I   80 (254)
T cd03351           1 MIHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEI   80 (254)
T ss_pred             CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             91897796998999997999999899999999999999799689199797765256057534778767673798676997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEE
Q ss_conf             22222122443211112222221223320000166554331001234432234524553214860652344433650640
Q gi|255764481|r   89 GKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIG  168 (271)
Q Consensus        89 G~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG  168 (271)
                      ||+|.|||+|+|||||..+++.|+||++|+||+++||+|||.||++|+++|++.|+|||+|||+||||++++||||++||
T Consensus        81 G~~~~Ire~vtI~rgt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~laGhv~Igd~a~IGg~~~v~q~v~IG  160 (254)
T cd03351          81 GDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIG  160 (254)
T ss_pred             CCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEECCCCEECCCCEEC
T ss_conf             99778995330236743788755978885782025445677337975993344556856989984898836775981999


Q ss_pred             CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             47435013211223333100010745323344201444288899999999999999727998999999999642589899
Q gi|255764481|r  169 KYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEV  248 (271)
Q Consensus       169 ~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v  248 (271)
                      ++|||||+|+|+||||||+++.|+|||++|||++||||+||++|+|+.|++|||+||+++++++|++++++++..++||+
T Consensus       161 ~~a~Igags~V~kDVpp~~~v~G~PA~~~glN~vGl~R~g~~~~~i~~i~~ayr~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (254)
T cd03351         161 RHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYRSGLTLEEALEELEEEAPDSPEV  240 (254)
T ss_pred             CCEEECCCCEEECCCCCCCEECCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             66199767456113698726517965787214898867799999999999999999617998999999998764699899


Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             999999861588873
Q gi|255764481|r  249 SDIINFIFADRKRPL  263 (271)
Q Consensus       249 ~~~~~Fi~~s~rRgi  263 (271)
                      ++|++||++| +||+
T Consensus       241 ~~~~~Fi~~s-~RGi  254 (254)
T cd03351         241 EELVDFIRSS-KRGI  254 (254)
T ss_pred             HHHHHHHHHC-CCCC
T ss_conf             9999999736-7899


No 5  
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00  E-value=0  Score=590.06  Aligned_cols=255  Identities=40%  Similarity=0.718  Sum_probs=249.7

Q ss_pred             EECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             56551088898599889899565598899899889898668689168468655311434223210233312222223322
Q gi|255764481|r    9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLV   88 (271)
Q Consensus         9 ~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~I   88 (271)
                      ||||||+|+|+|+||+||+|||||+|+++|+||++|+|++|++|.++++||++|.|+|+|+||.+|||++|++++++++|
T Consensus         2 ~IHptAiI~~~A~Ig~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~I   81 (256)
T PRK12461          2 MIHPTAVIDPSAKLGEGVEIGPFAVIGADVEIGDGTWIMPHAVILGWTRIGKNNKIHQGAVVGDEPQDFGYKGEESHLII   81 (256)
T ss_pred             CCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf             29998798998999999999999999999999999999498189199899974399754311763334441586206998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEE
Q ss_conf             22222122443211112222221223320000166554331001234432234524553214860652344433650640
Q gi|255764481|r   89 GKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIG  168 (271)
Q Consensus        89 G~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG  168 (271)
                      ||+|.|||++||+|||. +++.|+||++|+||+++||+|||.||++|+++|++.|+|||+|||+|+||+++++|||++||
T Consensus        82 Gd~~~Ire~~tI~rgt~-~~~~T~IG~~~~im~~vhIaHd~~IG~~~iian~~~laG~v~Igd~v~iGg~~~v~q~v~IG  160 (256)
T PRK12461         82 GDNNVIREGVTIHRGTK-GGTVTRIGNDNLLMANSHIAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIG  160 (256)
T ss_pred             CCCCEECCCCCCCCCCC-CCCCEEECCCCEEECCCCCCCCCCCCCCEEEECCEEECCCEEECCCCEECCCCEECCCCEEC
T ss_conf             99878798755678614-89866988785874364334643136770672220232425999972995734771797999


Q ss_pred             CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             47435013211223333100010745323344201444288899999999999999727998999999999642589899
Q gi|255764481|r  169 KYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEV  248 (271)
Q Consensus       169 ~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v  248 (271)
                      ++|||||+|+|+||||||+++.|+|||++|||++||||+||++++|++||+|||+|||++++++|++++++++..++||+
T Consensus       161 ~~a~Ig~gS~V~kDVPp~~~v~G~pA~~~glN~vGl~R~gf~~~~i~~i~~ay~~l~~~~~~~~~~~~~~~~~~~~~~~v  240 (256)
T PRK12461        161 RLAMMAGGSRISKDVPPYCMMAGNTTNVHGLNAVGLRRNGFSSRAIRALKRAYKIIYRSGLSLQDAVQELEDQFPMSPEI  240 (256)
T ss_pred             CCCEECCCCEEEEECCCCEEEECCCCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             99699878577753799838826877654010440452898999999999999999708998999999998765499999


Q ss_pred             HHHHHHHHHCCCCCCCC
Q ss_conf             99999986158887378
Q gi|255764481|r  249 SDIINFIFADRKRPLSN  265 (271)
Q Consensus       249 ~~~~~Fi~~s~rRgi~~  265 (271)
                      ++|++||++| +||||.
T Consensus       241 ~~~~~Fi~~s-~RGi~r  256 (256)
T PRK12461        241 RELIDFVKAS-KRGIVR  256 (256)
T ss_pred             HHHHHHHHHC-CCCCCC
T ss_conf             9999998627-887529


No 6  
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=100.00  E-value=0  Score=344.86  Aligned_cols=193  Identities=28%  Similarity=0.453  Sum_probs=181.9

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      ++|++++.|||+|+|+++|+||+|++|+|+|+|+++|+||++|+|+++++|.++++||++|.|+++++||.+|++.....
T Consensus         2 a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~~   81 (205)
T cd03352           2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG   81 (205)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCCC
T ss_conf             69199999999879999999999999989889999968898836600344727868754477715348621353231479


Q ss_pred             C-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEE
Q ss_conf             2-------223322222221224432111122222212233200001665543310012344322345245532148606
Q gi|255764481|r   82 V-------GTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVV  154 (271)
Q Consensus        82 ~-------~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~  154 (271)
                      .       ...+.|||++.|+++++|+|++.   ..|+||+++++|.++||+|||.||+++++++++.++||++|+|+||
T Consensus        82 ~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~---~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~g~~~Igd~~~  158 (205)
T cd03352          82 GGWVKIPQLGGVIIGDDVEIGANTTIDRGAL---GDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVI  158 (205)
T ss_pred             CCCEECCCCCCEEECCCEEECCCCEECCCCC---CCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCE
T ss_conf             8404514213189848849888627636642---6774787768645452556404158707503200026524974353


Q ss_pred             ECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             5234443365064047435013211223333100010745323
Q gi|255764481|r  155 FGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       155 IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      ||+++.++|+++||++|||||+|+|+||||||+++.|+|||..
T Consensus       159 iG~~s~i~~gv~IG~~a~VgagSvVtkdVp~~~iv~G~PAr~i  201 (205)
T cd03352         159 IGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPH  201 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCCCCCEEEEEECCHH
T ss_conf             9896488299399999899868879648699969997628435


No 7  
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00  E-value=0  Score=340.29  Aligned_cols=193  Identities=23%  Similarity=0.381  Sum_probs=152.9

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCC---
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331---
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKY---   78 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~---   78 (271)
                      ++|++++.|.|.++|+++++||+||.|+|+|+|+++|+||+||+|+|+|+|..++.||++|.|+++++||.+...+.   
T Consensus       111 a~Ig~~v~Igp~~vIg~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~nv~I~~~~~IG~~~~I~~g~vIG~dGFGf~~~~  190 (343)
T PRK00892        111 AKIGKSVSIGPNAVIGAGVEIGDGVIIGAGAVIGAGVKIGDDCRLHANVTIYHRVQIGNRVLIHSGAVIGQDGFGFAPDR  190 (343)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCEEECCCCEECCCCEECCCCCCCCCCC
T ss_conf             78799988999989999989999999929819958818889958811856625558888756468862236675413679


Q ss_pred             --CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEE
Q ss_conf             --22--22223322222221224432111122222212233200001665543310012344322345245532148606
Q gi|255764481|r   79 --HN--FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVV  154 (271)
Q Consensus        79 --~~--g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~  154 (271)
                        +.  ..-..|+|||++.|++++||+||+..   .|+||++++||.++||||||+||++|++++++.|+||++|||+|+
T Consensus       191 ~~~~kip~~G~V~I~d~veIgan~tIdrg~~~---~T~Ig~~~kidn~vhIaHn~~IG~~~iia~~~giaGs~~igd~v~  267 (343)
T PRK00892        191 GGWVKIPQLGRVIIGDDVEIGANTTIDRGALD---DTVIGEGVKIDNLVQIAHNVRIGRHCAIAAQVGIAGSTKIGRYCM  267 (343)
T ss_pred             CCEEECCCCCEEEECCCCEECCCCEECCCCCC---CCEECCCCEEEEEEEECCCCEECCCCEEEECCEEEEEEEECCCEE
T ss_conf             94046464324998898688887327236677---978898965921117616747878838852114700579999149


Q ss_pred             ECCCCCCCCCEEEECCCEEECCCCCCCCCCC-CCHHHHCCCCCC
Q ss_conf             5234443365064047435013211223333-100010745323
Q gi|255764481|r  155 FGGGSAVHQFTRIGKYAFIGGMTGVVHDVIP-YGILNGNPGALR  197 (271)
Q Consensus       155 IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp-~~~~~G~pa~~~  197 (271)
                      ||+++.|+|+++||+++|++|+|.|++|||+ ...+.|.||+..
T Consensus       268 igG~~gi~~h~~Ig~~~~i~~~sgv~~di~~~g~~~~G~Pa~~~  311 (343)
T PRK00892        268 IGGQVGIAGHLEIGDGVQITAMSGVMKSITEPGEYSSGIPAQPN  311 (343)
T ss_pred             ECCCCCCCCCCEECCCCEEEECCEECCCCCCCCEEEEEECCCHH
T ss_conf             94413234886989997990065143646999808975346008


No 8  
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]  Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=100.00  E-value=1.4e-45  Score=304.88  Aligned_cols=193  Identities=27%  Similarity=0.492  Sum_probs=175.5

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECC------C
Q ss_conf             5057997565510888985998898995655988998998898986686891684686553114342232102------3
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDT------Q   75 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~------q   75 (271)
                      ++|++++.|-|.|+|..++.||+||.|+|+|+|++||+||++|+|+|+|+|+.++.||+||.|+|+|+||+|=      +
T Consensus       114 a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~~v~i~~~~~lG~nV~I~~GaVIG~DGFGya~~~  193 (336)
T TIGR01853       114 AKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYPNVVIYERVQLGKNVIIHAGAVIGSDGFGYAHTA  193 (336)
T ss_pred             CCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEEEECCEECCEEEECCCCEECCCCCCEEECC
T ss_conf             31078436875417888868778636357768768868799677806708972415647158768878867873203578


Q ss_pred             CCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE
Q ss_conf             3312-2-2222332222222122443211112222221223320000166554331001234432234524553214860
Q gi|255764481|r   76 SKYH-N-FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV  153 (271)
Q Consensus        76 d~~~-~-g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~  153 (271)
                      +..+ + ..-..|+|+|++.|+.|+||.||+..   .|.|++++.|...++|||+|+||+||+|+.++.|+|+++||+||
T Consensus       194 ~g~~~KI~q~G~ViI~D~VEIGANTtIDRg~~~---dT~i~~gtKIDNLVQIAHNc~IG~n~~ivaqvGiaGSt~iG~~V  270 (336)
T TIGR01853       194 NGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFD---DTVIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNV  270 (336)
T ss_pred             CCCEEEEEEECEEEEECEEEECCCCHHHCCCCC---CCEEECCCEECCEEEEEEEEEECCCCEEEEEEECCEEEEECCEE
T ss_conf             897154413024896023387468702110214---71872384662315741334626642789642011346755806


Q ss_pred             EECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHH--CCCCCC
Q ss_conf             65234443365064047435013211223333100010--745323
Q gi|255764481|r  154 VFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNG--NPGALR  197 (271)
Q Consensus       154 ~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G--~pa~~~  197 (271)
                      .|||.+++-.+.+||+.++|+|.|.|++||||...+.|  -||+..
T Consensus       271 ~~GGqvGv~GHl~IgD~v~i~A~sgV~~~~~~~~~ygggi~Pa~~~  316 (336)
T TIGR01853       271 ILGGQVGVAGHLEIGDNVTIGAKSGVTKSVPPNGRYGGGIIPAMPQ  316 (336)
T ss_pred             EECCEEEEECEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCCHH
T ss_conf             9626026511089438348845122067779886010011141202


No 9  
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=100.00  E-value=2.6e-39  Score=266.32  Aligned_cols=180  Identities=21%  Similarity=0.347  Sum_probs=139.5

Q ss_pred             CEECC-CEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             75655-10888985998898995655988998998898986686891684686553114342232102333122222233
Q gi|255764481|r    8 PIIHP-LALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTEL   86 (271)
Q Consensus         8 ~~Ihp-sA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v   86 (271)
                      .+||| +++|+|+|+||+||+|+|+|+|+++|+||++|+|+|+++| +++.||++|+|++++++....       ....+
T Consensus         3 ~~i~p~s~~I~~~v~IG~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I-~~~~IG~~~~I~~~~vi~~~~-------ig~~~   74 (193)
T cd03353           3 TLIDPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIEGAV-------IGNGA   74 (193)
T ss_pred             EEECCCEEEECCCCEECCCCEECCCEEEECCCEECCCCEECCCEEE-CCCEECCCCEECCCEECCCCE-------ECCCC
T ss_conf             7958980699998299999999898299298599999899573457-786888874002100113525-------17652


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCEEEC
Q ss_conf             2222222122443211112222----2212233200001-----6655433100123443223452455-3214860652
Q gi|255764481|r   87 LVGKKCVIREGVTINRGTVEYG----GKTIVGDNNFFLA-----NSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFG  156 (271)
Q Consensus        87 ~IG~~~~Ire~v~I~~gt~~~~----~~T~IG~~~~i~~-----~~hI~Hd~~IG~~vii~n~~~l~G~-v~Igd~~~IG  156 (271)
                      .||+++.||++++|..++..+.    ..|.||+++.+..     +++|+|+|.||.+++++|.+.+++| ++|||+||||
T Consensus        75 ~IG~~~~i~~~~~I~~~~~iG~~v~i~~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~~g~~~~~t~IGd~v~IG  154 (193)
T cd03353          75 TVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIG  154 (193)
T ss_pred             EECCCEEECCCCEECCEEEECCCEEEECCCCCCCCEECCEEECCCCEECCCCEECCCEEEECCCCCCCCCCEECCCCEEC
T ss_conf             66685076587688751674253576444336884877244618856777888866758873434335623433561898


Q ss_pred             CCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             3444336506404743501321122333310001074532
Q gi|255764481|r  157 GGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGAL  196 (271)
Q Consensus       157 ~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~  196 (271)
                      ++++++|+++||++|||||+|.|+||||||+|+.| +||.
T Consensus       155 ~~~~i~~~v~IG~~a~Igags~V~kdVpp~~lvvg-~~~~  193 (193)
T cd03353         155 SNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIA-RARQ  193 (193)
T ss_pred             CCCEEECCEEECCCCEECCCCEECCCCCCCCEEEE-ECCC
T ss_conf             89879898399999899869888842399978996-2489


No 10 
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=100.00  E-value=8.4e-39  Score=263.15  Aligned_cols=219  Identities=24%  Similarity=0.392  Sum_probs=184.6

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCC---
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331---
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKY---   78 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~---   78 (271)
                      ++++.++.|.|.++|.++|.||+||.|+|.|+|+++|+||++|+|+++|+|..++.||++|.|+++++||.+---+.   
T Consensus       112 A~i~~~~~ig~~vvI~~~v~IG~~~~I~~~avIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~  191 (338)
T COG1044         112 ATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTA  191 (338)
T ss_pred             CCCCCCCCCCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCEEECCCCEECCCCCCCCCCC
T ss_conf             70377873288749888978789858988978888968888858847878952757878228889988756852122466


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEE
Q ss_conf             ----2222223322222221224432111122222212233200001665543310012344322345245532148606
Q gi|255764481|r   79 ----HNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVV  154 (271)
Q Consensus        79 ----~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~  154 (271)
                          .-....+|.|||++.|+.+++|.|+...   .|.||+++.|...++|||+|.||.+|+++.++.++|+++||++|.
T Consensus       192 ~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~---dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~  268 (338)
T COG1044         192 IGWVKIPQIGRVIIGDDVEIGANTTIDRGALD---DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVI  268 (338)
T ss_pred             CCCEECCEECEEEECCCEEECCCCEECCCCCC---CCEECCCCEECCEEEECCCCEECCCCEEECCCEEECCCEECCEEE
T ss_conf             88567126065997982487355242565556---726537848764307815527888837702631613535778079


Q ss_pred             ECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             52344433650640474350132112233331000107453233442014442888999999999999997279989999
Q gi|255764481|r  155 FGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKN  234 (271)
Q Consensus       155 IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~  234 (271)
                      ||+.+.+..+.+||++++|++++.|.++||+...+.|.|+++.   ..++|             .+  .++++...+.++
T Consensus       269 igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~---k~w~k-------------~~--a~~~~l~~~~~r  330 (338)
T COG1044         269 IGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPI---KEWLK-------------TA--ALIRRLPEMRKR  330 (338)
T ss_pred             ECCCEEECCCEEECCCCEEECCCCCCCCCCCCCEECCCCCCHH---HHHHH-------------HH--HHHHHCHHHHHH
T ss_conf             8761346484187578788045243123578866336777539---99999-------------99--998527778999


Q ss_pred             HHHHHHH
Q ss_conf             9999964
Q gi|255764481|r  235 AGAIREQ  241 (271)
Q Consensus       235 l~~l~~~  241 (271)
                      +++|+++
T Consensus       331 ~k~lek~  337 (338)
T COG1044         331 LKALEKQ  337 (338)
T ss_pred             HHHHHCC
T ss_conf             8776405


No 11 
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00  E-value=9.7e-35  Score=237.72  Aligned_cols=225  Identities=24%  Similarity=0.395  Sum_probs=188.3

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      ..+.|||+|+|+|+|+|+++|.|||||+|+++|+||+||+|+|+|+|..+++||+||.|+|+++|..            .
T Consensus        97 ~~~gIh~sA~I~~~a~Ig~~v~Igp~~vIg~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~nv~I~~------------~  164 (343)
T PRK00892         97 PAPGIHPSAVIDPTAKIGKSVSIGPNAVIGAGVEIGDGVIIGAGAVIGAGVKIGDDCRLHANVTIYH------------R  164 (343)
T ss_pred             CCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECC------------C
T ss_conf             5688797536188778799988999989999989999999929819958818889958811856625------------5


Q ss_pred             CCCCCCCCCCCCCCCCCC-----CCC-------CCCCCCCCCCCHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             322222221224432111-----122-------22221223320000166554----33100123443223452455321
Q gi|255764481|r   86 LLVGKKCVIREGVTINRG-----TVE-------YGGKTIVGDNNFFLANSHVA----HDCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~g-----t~~-------~~~~T~IG~~~~i~~~~hI~----Hd~~IG~~vii~n~~~l~G~v~I  149 (271)
                      +.||++|+|..++.|..-     ...       .-+...|||++.|++++.|.    .+++||++|-+.|.+.++.+|+|
T Consensus       165 ~~IG~~~~I~~g~vIG~dGFGf~~~~~~~~kip~~G~V~I~d~veIgan~tIdrg~~~~T~Ig~~~kidn~vhIaHn~~I  244 (343)
T PRK00892        165 VQIGNRVLIHSGAVIGQDGFGFAPDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVRI  244 (343)
T ss_pred             EEECCCCEECCCCEECCCCCCCCCCCCCEEECCCCCEEEECCCCEECCCCEECCCCCCCCEECCCCEEEEEEEECCCCEE
T ss_conf             58888756468862236675413679940464643249988986888873272366779788989659211176167478


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             486065234443365064047435013211223--333100010745323344201444288899999999999999727
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQ  227 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~  227 (271)
                      |++++|.+++++...++||+++++|+.+.|...  |-.++++.|.-.-...+...|....|+...+.++-++.+ .+||+
T Consensus       245 G~~~iia~~~giaGs~~igd~v~igG~~gi~~h~~Ig~~~~i~~~sgv~~di~~~g~~~~G~Pa~~~~~~~r~~-a~~~~  323 (343)
T PRK00892        245 GRHCAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVQITAMSGVMKSITEPGEYSSGIPAQPNKEWRKTA-ALVRR  323 (343)
T ss_pred             CCCCEEEECCEEEEEEEECCCEEECCCCCCCCCCEECCCCEEEECCEECCCCCCCCEEEEEECCCHHHHHHHHH-HHHHH
T ss_conf             78838852114700579999149944132348869899979900651436469998089753460089999999-88860


Q ss_pred             CCCHHHHHHHHHHHCC
Q ss_conf             9989999999996425
Q gi|255764481|r  228 GDSIYKNAGAIREQNV  243 (271)
Q Consensus       228 ~~~l~e~l~~l~~~~~  243 (271)
                      ...+.+.+++|++...
T Consensus       324 Lp~l~k~~~~lek~~~  339 (343)
T PRK00892        324 LDKMRKRLKALEKKVE  339 (343)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             7999999999999998


No 12 
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882    N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc.    The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=100.00  E-value=1.2e-34  Score=237.09  Aligned_cols=181  Identities=24%  Similarity=0.373  Sum_probs=149.0

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf             05799756551088898599889899565598899899889898668689168468655311434223210233312222
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFV   82 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~   82 (271)
                      .|++++.|+|..++++.++||+||.|||+|.| .|+.|++++.|.|++++. ++.||++|.|+|||.|.+          
T Consensus       273 ~~G~Dv~I~~~v~leG~v~iG~~v~IGp~~~I-~ns~I~~~~~I~~~s~~e-~~~ig~~~~vGPFArLRP----------  340 (461)
T TIGR01173       273 EIGQDVVIDPNVILEGKVQIGDDVVIGPGCVI-KNSVIGSNAVIKPYSVLE-GSEIGEGCDVGPFARLRP----------  340 (461)
T ss_pred             EECCEEEECCCCEECCEEEECCCEEECCCCEE-EEEEECCCCEEEEEEECC-CCEECCCCEECCCCCCCC----------
T ss_conf             98771697558388340798787078898589-972886885588888414-678615640277300186----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCEEECC
Q ss_conf             22332222222122443211112----22222122332000016655433100123443223452455-32148606523
Q gi|255764481|r   83 GTELLVGKKCVIREGVTINRGTV----EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFGG  157 (271)
Q Consensus        83 ~~~v~IG~~~~Ire~v~I~~gt~----~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~-v~Igd~~~IG~  157 (271)
                        ...|++++.|+-||-+-.++.    +-++.|+|||       +.||.+|.||-++|.+|.-..--| +.|||+||||+
T Consensus       341 --~~~L~~~~hiGNFVE~Kna~iG~gsKA~HLsYlGD-------AeiG~~vNiGAGtITcNYDG~nK~~T~IGd~VFiGS  411 (461)
T TIGR01173       341 --GSVLGAGVHIGNFVEVKNARIGEGSKAGHLSYLGD-------AEIGSNVNIGAGTITCNYDGVNKHKTIIGDGVFIGS  411 (461)
T ss_pred             --CCHHHCCCEEEEEEEEECCEECCCCCCCCCCEEEE-------EEECCCCEECCEEEEEECCCCCCCCCEECCCCEECC
T ss_conf             --43211778160258652476188644231433320-------250796003231689932796220348648878776


Q ss_pred             CCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHC
Q ss_conf             44433650640474350132112233331000107453233442014442
Q gi|255764481|r  158 GSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRA  207 (271)
Q Consensus       158 ~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~  207 (271)
                      +|.+-.+++||++|+|||||+||+|||+++|+..   |.+..|+.|-.|+
T Consensus       412 nt~LVAPV~iG~gA~iaAGstvt~DVp~g~La~~---R~~Q~~iegW~~~  458 (461)
T TIGR01173       412 NTQLVAPVKIGDGATIAAGSTVTKDVPEGALAIA---RARQRNIEGWVRP  458 (461)
T ss_pred             CCEEECCEEECCCCEECCCCEEECCCCCCCCEEE---CCCCEECCCCCCC
T ss_conf             7604554394381187124148023488852662---4556552276326


No 13 
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]  Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=99.97  E-value=2.8e-32  Score=222.32  Aligned_cols=202  Identities=26%  Similarity=0.380  Sum_probs=169.5

Q ss_pred             CCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             97565510888985998898995655988998998898986686891684686553114342232102333122222233
Q gi|255764481|r    7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTEL   86 (271)
Q Consensus         7 ~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v   86 (271)
                      .+-|||+|+++|+|+|+++|.|+||++|+.+|.||+||+|+|+|+|..+++||++|.|||+++|..            .+
T Consensus       101 ~~gi~p~a~~~~~a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~~v~i~~------------~~  168 (336)
T TIGR01853       101 EAGIHPTAVVEPSAKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYPNVVIYE------------RV  168 (336)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEEEE------------CC
T ss_conf             035676873056531078436875417888868778636357768768868799677806708972------------41


Q ss_pred             CCCCCCCCCCCCCCCCC-----CCC--------CCCCCCCCCCCHHCCCCCCCC----CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             22222221224432111-----122--------222212233200001665543----3100123443223452455321
Q gi|255764481|r   87 LVGKKCVIREGVTINRG-----TVE--------YGGKTIVGDNNFFLANSHVAH----DCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        87 ~IG~~~~Ire~v~I~~g-----t~~--------~~~~T~IG~~~~i~~~~hI~H----d~~IG~~vii~n~~~l~G~v~I  149 (271)
                      .||+||.|+.++.|-..     ...        .-+..+|+|++-|++|++|..    |+.|++++-|-|.+++|.+|+|
T Consensus       169 ~lG~nV~I~~GaVIG~DGFGya~~~~g~~~KI~q~G~ViI~D~VEIGANTtIDRg~~~dT~i~~gtKIDNLVQIAHNc~I  248 (336)
T TIGR01853       169 QLGKNVIIHAGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTVIGEGTKIDNLVQIAHNCRI  248 (336)
T ss_pred             EECCEEEECCCCEECCCCCCEEECCCCCEEEEEEECEEEEECEEEECCCCHHHCCCCCCCEEECCCEECCEEEEEEEEEE
T ss_conf             56471587688788678732035788971544130248960233874687021102147187238466231574133462


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCCCCCCHHHHCC--CCHHHHHHHHHHH
Q ss_conf             486065234443365064047435013211223--33310001074532334420144428--8899999999999
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRGVNVVAMRRAG--FSRDTIHLIRAVY  221 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~~N~~glkR~g--~s~e~i~~l~~ay  221 (271)
                      |+|+.|-+.+++-.-++||+|+|+||.+.|...  |-++.++.|--+-...+-.- -+.-|  |..-+.++.+|.+
T Consensus       249 G~n~~ivaqvGiaGSt~iG~~V~~GGqvGv~GHl~IgD~v~i~A~sgV~~~~~~~-~~ygggi~Pa~~~~~w~k~~  323 (336)
T TIGR01853       249 GENCIIVAQVGIAGSTKIGRNVILGGQVGVAGHLEIGDNVTIGAKSGVTKSVPPN-GRYGGGIIPAMPQKEWLKIA  323 (336)
T ss_pred             CCCCEEEEEEECCEEEEECCEEEECCEEEEECEEEECCCCEEEEECCCCCCCCCC-CCCCEEECCCCHHHHHHHHH
T ss_conf             6642789642011346755806962602651108943834884512206777988-60100111412024789999


No 14 
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97  E-value=8.5e-32  Score=219.32  Aligned_cols=181  Identities=21%  Similarity=0.303  Sum_probs=128.8

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf             05799756551088898599889899565598899899889898668689168468655311434223210233312222
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFV   82 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~   82 (271)
                      +++.++.|.|.++|++.+.||+||+|||+|+| .|+.||++|.|.++++|. ++.||++|.|+|||.|..          
T Consensus       267 ~ig~dv~I~~nvvi~G~v~IG~~v~Ig~g~~I-~ns~Ig~~~~I~~~S~Ie-~s~Ig~~~~IGPfA~lRp----------  334 (456)
T PRK09451        267 THGRDVEIDTNVIIEGNVTLGHRVKIGAGCVL-KNCVIGDDCEISPYSVVE-DANLGAACTIGPFARLRP----------  334 (456)
T ss_pred             EECCCEEECCCEEEECCEEECCCEEECCCEEE-ECCEECCCCEEECCEEEC-CCEECCCCEECCCCCCCC----------
T ss_conf             96575077577088442475797598240798-576984687894225650-663436716888643488----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCEEECC
Q ss_conf             2233222222212244321111222----222122332000016655433100123443223452455-32148606523
Q gi|255764481|r   83 GTELLVGKKCVIREGVTINRGTVEY----GGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFGG  157 (271)
Q Consensus        83 ~~~v~IG~~~~Ire~v~I~~gt~~~----~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~-v~Igd~~~IG~  157 (271)
                        ...|++++.|+.||-+...+...    ...+.|||       +.||.+|.||-+++.+|.....-| +.|||+|+||.
T Consensus       335 --~t~i~~~~~iGnfvEiK~s~i~~g~k~~HlsYiGD-------a~iG~~~NiGAGtit~NyDG~~K~~t~igd~~fiGs  405 (456)
T PRK09451        335 --GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGD-------AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGS  405 (456)
T ss_pred             --CCEECCCCEEEEEEEEECCEECCCCEECCEEEECC-------CEECCCCEECCCEEEEECCCCCCCCCEECCCCEECC
T ss_conf             --76236788882289982459758977042336614-------476588688887699722487665648789829987


Q ss_pred             CCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHC
Q ss_conf             44433650640474350132112233331000107453233442014442
Q gi|255764481|r  158 GSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRA  207 (271)
Q Consensus       158 ~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~  207 (271)
                      ++.+.++++||++|+||+||+|++|||+.+++.+   |.+..|+.|-+|+
T Consensus       406 n~~lvapv~iG~~a~i~aGs~it~dVp~~~l~i~---r~~q~~~~~~~~~  452 (456)
T PRK09451        406 DTQLVAPVTVGKGATIGAGTTVTRDVAENELVIS---RVPQRHIQGWQRP  452 (456)
T ss_pred             CCEEECCEEECCCCEECCCCEECCCCCCCCEEEC---CCCCCCCCCCCCC
T ss_conf             8448358498899799989878850699977770---4662335555674


No 15 
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.97  E-value=1.8e-29  Score=204.75  Aligned_cols=172  Identities=25%  Similarity=0.334  Sum_probs=129.4

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      ..++..+.|||+|.|. ++++|++|+||++|.| .++.|||+++|++++.|. +++||+.|.|.+++.|+...       
T Consensus         3 ~~l~~~p~Ihp~a~i~-~~~lG~~v~Ig~~~~i-~ns~IGDySyI~~~~~I~-n~~IGkfcsIa~~v~I~~~n-------   72 (204)
T TIGR03308         3 VLLSPEPTLHPTAELT-ESKLGRYTEIGERTRL-REVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINATN-------   72 (204)
T ss_pred             CCCCCCCEECCCCEEC-CCCCCCCEEECCCCEE-ECCEECCCCEECCCCEEE-CCEECCCCEECCCCEECCCC-------
T ss_conf             4347997689998683-2783783399999588-337999985888997598-88699984888987989877-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf             22233222222212244321111222222122332000016655433100123443223452455321486065234443
Q gi|255764481|r   82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV  161 (271)
Q Consensus        82 ~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v  161 (271)
                                 ..-+.++.|.-+..       ++. ++.       +... +...+..  .-...++||+++|||.+++|
T Consensus        73 -----------Hp~~~~s~~~f~y~-------~~~-~~~-------~~~~-~~~~~~~--~~~~~~~Ig~dvwiG~~~~i  123 (204)
T TIGR03308        73 -----------HPMERPTLHHFTYR-------AAM-YFD-------DASD-DADFFAW--RRAKRVTIGHDVWIGHGAVI  123 (204)
T ss_pred             -----------CCCCCCEECCEEEE-------CCC-CCC-------CCCC-CHHHHCC--CCCCCEEECCCCEECCCCEE
T ss_conf             -----------87667267777553-------753-346-------6666-1223213--34787098997688799899


Q ss_pred             CCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
Q ss_conf             36506404743501321122333310001074532334420144428889999999999
Q gi|255764481|r  162 HQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAV  220 (271)
Q Consensus       162 ~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~a  220 (271)
                      .++++||++|+|||||+|+||||||++++|+|||+.        |+.|++++|..|.+.
T Consensus       124 ~~gv~IG~gavigagsvVtkdv~~~~iv~G~PAk~i--------r~RF~~~~i~~L~~~  174 (204)
T TIGR03308       124 LPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLI--------RRRFPPEIAARIEAL  174 (204)
T ss_pred             CCCCEECCCCEECCCCEECCCCCCCEEEEECCCEEE--------ECCCCHHHHHHHHHC
T ss_conf             199799999899779989951799849984188566--------310999999999877


No 16 
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.96  E-value=1.6e-28  Score=198.79  Aligned_cols=186  Identities=27%  Similarity=0.451  Sum_probs=157.2

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      ..+.|||+|+|+|+|.++++|.|||+++|+++|+||+|++|+++++|..++.||++|.|+++++|+.            .
T Consensus        98 ~~~~I~~~A~i~p~A~i~~~~~ig~~vvI~~~v~IG~~~~I~~~avIg~~~~IG~~~~i~~~v~I~~------------~  165 (338)
T COG1044          98 PAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYH------------N  165 (338)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEC------------C
T ss_conf             5355476553177670377873288749888978789858988978888968888858847878952------------7


Q ss_pred             CCCCCCCCCCCCCCCCCC------CCCC------CCCCCCCCCCHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCEE
Q ss_conf             322222221224432111------1222------222122332000016655433----100123443223452455321
Q gi|255764481|r   86 LLVGKKCVIREGVTINRG------TVEY------GGKTIVGDNNFFLANSHVAHD----CKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~g------t~~~------~~~T~IG~~~~i~~~~hI~Hd----~~IG~~vii~n~~~l~G~v~I  149 (271)
                      +.||++|.|.+++.|...      +..+      .+..+|||++.|+++++|.+.    +.||+++.|.|.++++.+|+|
T Consensus       166 ~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~I  245 (338)
T COG1044         166 VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRI  245 (338)
T ss_pred             CEECCCEEECCCCEECCCCCCCCCCCCCCEECCEECEEEECCCEEECCCCEECCCCCCCCEECCCCEECCEEEECCCCEE
T ss_conf             57878228889988756852122466885671260659979824873552425655567265378487643078155278


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCCCCCCH
Q ss_conf             486065234443365064047435013211223--333100010745323344201
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRGVNVVA  203 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~~N~~g  203 (271)
                      |+++.|.+++.+-+.++||+|+++|+.+.+...  |-.++...+.-+....+-..+
T Consensus       246 G~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~  301 (338)
T COG1044         246 GEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPG  301 (338)
T ss_pred             CCCCEEECCCEEECCCEECCEEEECCCEEECCCEEECCCCEEECCCCCCCCCCCCC
T ss_conf             88837702631613535778079876134648418757878804524312357886


No 17 
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.96  E-value=6.1e-29  Score=201.47  Aligned_cols=181  Identities=24%  Similarity=0.352  Sum_probs=119.6

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf             05799756551088898599889899565598899899889898668689168468655311434223210233312222
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFV   82 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~   82 (271)
                      .|++++.|+|..++....+||++|.|||+|+| .|+.||+|+.|.++++|. +++||++|.|+|||.|..          
T Consensus       270 ~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i-~ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRP----------  337 (460)
T COG1207         270 EIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRP----------  337 (460)
T ss_pred             EECCCEEEECCCEEEEEEEECCCEEECCCCEE-EEEEECCCCEEEECCEEE-CCEECCCCCCCCCCCCCC----------
T ss_conf             98781499148489415896796499999678-753876998897510430-558547963378310179----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCEEECC
Q ss_conf             223322222221224432111122----2222122332000016655433100123443223452455-32148606523
Q gi|255764481|r   83 GTELLVGKKCVIREGVTINRGTVE----YGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFGG  157 (271)
Q Consensus        83 ~~~v~IG~~~~Ire~v~I~~gt~~----~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~-v~Igd~~~IG~  157 (271)
                        ...+|+++.|+.||-+...+..    -+..|.|||       +.||.+|.||-++|.+|.-..--| ..|||++|||+
T Consensus       338 --g~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGD-------A~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGS  408 (460)
T COG1207         338 --GAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGD-------AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGS  408 (460)
T ss_pred             --CCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECC-------CEECCCCEECCCEEEECCCCCCCCEEEECCCCEECC
T ss_conf             --68526797674259984356068863353234213-------320687421442599847886332006468857766


Q ss_pred             CCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHC
Q ss_conf             44433650640474350132112233331000107453233442014442
Q gi|255764481|r  158 GSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRA  207 (271)
Q Consensus       158 ~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~  207 (271)
                      ++.+..+++||++++|||||+||+|||+.+++.+   |.+..|+.|-.|+
T Consensus       409 ns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~---RarQ~~~egw~~~  455 (460)
T COG1207         409 NSQLVAPVTIGDGATIAAGSTITKDVPEGALAIS---RARQTNKEGWVRK  455 (460)
T ss_pred             CCCEEEEEEECCCCEECCCCEECCCCCCCCEEEE---ECCEEECCCCCCC
T ss_conf             8718864896698488146368365799844674---0441432442145


No 18 
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.95  E-value=6.1e-28  Score=195.20  Aligned_cols=105  Identities=14%  Similarity=0.271  Sum_probs=82.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      .+.||+++.|+++|+||.                     +.+|+|.||+++.++.++.+.| ++|||++|||.+++|+++
T Consensus        39 ~i~IG~~~~I~~n~~Ih~---------------------~~~~~~~Ig~~~~ig~~~~~~g-~~Ig~~~~IG~~a~I~~G   96 (155)
T cd04745          39 RIVIRDGANVQDNCVIHG---------------------FPGQDTVLEENGHIGHGAILHG-CTIGRNALVGMNAVVMDG   96 (155)
T ss_pred             CEEECCCCEECCCCEECC---------------------CCCCCCEECCCCEECCCCEECC-CEEEEEEEECCCCEEECC
T ss_conf             789999979787844013---------------------5999869899978998748715-177432497687599597


Q ss_pred             EEEECCCEEECCCCCCC--CCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
Q ss_conf             06404743501321122--333310001074532334420144428889999999999
Q gi|255764481|r  165 TRIGKYAFIGGMTGVVH--DVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAV  220 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~k--dVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~a  220 (271)
                      ++||++|+||+||+|++  ||||++++.|+|||+.         +.+++|+++.+++.
T Consensus        97 ~~IG~~siIgagSvV~~~~~VP~~~l~~GnPAk~i---------r~l~~~e~~~~~~~  145 (155)
T cd04745          97 AVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVI---------RELSDEEVAWKTRG  145 (155)
T ss_pred             CEECCCCEEEECCEECCCCCCCCCEEEEEECCEEE---------ECCCHHHHHHHHHH
T ss_conf             79899979941878769968379989997286797---------43999999999999


No 19 
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.95  E-value=5.8e-28  Score=195.35  Aligned_cols=108  Identities=20%  Similarity=0.401  Sum_probs=82.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      .+.||++|.|+++++||..                     -+|++.||++|.++.++.+.+ ++|||++|||.+++|.++
T Consensus        39 ~i~IG~~~~I~~n~~I~~~---------------------~~~~~~ig~~v~ig~~~~i~g-~~Ig~~v~IG~~a~I~~G   96 (154)
T cd04650          39 SIYIGKYSNVQENVSIHTD---------------------HGYPTEIGDYVTIGHNAVVHG-AKVGNYVIVGMGAILLNG   96 (154)
T ss_pred             CEEECCCEEECCCCEEEEC---------------------CCCCCEECCCCEECCCEEEEC-CEECCEEEECCCEEEECC
T ss_conf             6599993398999889846---------------------999868799768899528823-022013598872299628


Q ss_pred             EEEECCCEEECCCCCC--CCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             0640474350132112--2333310001074532334420144428889999999999999
Q gi|255764481|r  165 TRIGKYAFIGGMTGVV--HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQ  223 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~--kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~  223 (271)
                      ++||++|+|||||+|+  +|||||++++|+|||+.         +.++++++..+++.-+.
T Consensus        97 v~IG~~svIgaGsVV~~~~~Vp~~~lv~G~PAr~i---------r~l~~~~~~~~~~~~~~  148 (154)
T cd04650          97 AKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVV---------RKLTEEEIEWIKKNAEE  148 (154)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEEECCEEEE---------EECCHHHHHHHHHHHHH
T ss_conf             79899979988988879979199849996181897---------72999999999999999


No 20 
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.95  E-value=7.3e-28  Score=194.74  Aligned_cols=143  Identities=17%  Similarity=0.335  Sum_probs=98.4

Q ss_pred             EECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             56551088898599889899565598899899889898668689168468655311434223210233312222223322
Q gi|255764481|r    9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLV   88 (271)
Q Consensus         9 ~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~I   88 (271)
                      .|||+|+|+|+|.|..+|+||            ++|+|+++++|+++                           ...+.|
T Consensus         1 ~I~~~a~I~p~A~I~G~V~IG------------~~~~I~~~~~I~~d---------------------------~~~i~I   41 (153)
T cd04645           1 EIDPSAFIAPNATVIGDVTLG------------EGSSVWFGAVLRGD---------------------------VNPIRI   41 (153)
T ss_pred             CCCCCEEECCCCEEECCEEEC------------CCCEECCCCEEECC---------------------------CCCEEE
T ss_conf             918981999999997726998------------99999658384246---------------------------663599


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEE
Q ss_conf             22222122443211112222221223320000166554331001234432234524553214860652344433650640
Q gi|255764481|r   89 GKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIG  168 (271)
Q Consensus        89 G~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG  168 (271)
                      |+++.|+++++||...                     .|++.||++|.++.++.+.| ++|||++|||.++.|+++++||
T Consensus        42 G~~~~I~~~~~Ih~~~---------------------~~~~~IG~~v~Ig~~~~i~g-~~Ig~~~~IG~~a~I~~gv~IG   99 (153)
T cd04645          42 GERTNIQDGSVLHVDP---------------------GYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGAVIG   99 (153)
T ss_pred             CCCCEECCCCCCCCCC---------------------CCCCEECCCCEECCCCEEEC-EEEEEEEEECCCCEECCCCEEC
T ss_conf             9998989685435259---------------------99979899989999959924-1873004770543985699988


Q ss_pred             CCCEEECCCCCC--CCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH
Q ss_conf             474350132112--23333100010745323344201444288899999999999
Q gi|255764481|r  169 KYAFIGGMTGVV--HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVY  221 (271)
Q Consensus       169 ~~a~ig~gs~V~--kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ay  221 (271)
                      ++|+||+||+|+  +|||||+++.|+|||+.         +-++++++..+++.-
T Consensus       100 ~~~vIgagsvV~~~~~vp~~~v~~G~PAr~i---------r~~~~~e~~~~~~~~  145 (153)
T cd04645         100 KGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV---------RELTDEEIAELRESA  145 (153)
T ss_pred             CCCEECCCCEECCCCEECCCCEEEECCCEEE---------CCCCHHHHHHHHHHH
T ss_conf             9979944989748979699859996283797---------159999999999999


No 21 
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.92  E-value=4.9e-25  Score=177.03  Aligned_cols=127  Identities=28%  Similarity=0.415  Sum_probs=96.6

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      -++.|+|.|+|.+.+.||+|+.|.+.|+|..++.||++|.|..++++.+.+.||++|+|+++++|++-            
T Consensus        85 ~~aRIepgaiir~~v~IG~~aVImmga~INiGA~IGegtmId~~Avvg~~a~IGk~~HisaGa~laGV------------  152 (231)
T TIGR03532        85 INARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV------------  152 (231)
T ss_pred             CCCEECCCCEEECCEEECCCEEEECCCEEECCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECC------------
T ss_conf             78357788588425298798399138887048598789458058564454688797058898643002------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                                    +.+.     +                                  +..|.|+|+||||+++.|.+++
T Consensus       153 --------------leP~-----~----------------------------------a~PViIeDnV~IGAnAvIl~GV  179 (231)
T TIGR03532       153 --------------IEPP-----S----------------------------------AKPVVIEDNVLIGANAVILEGV  179 (231)
T ss_pred             --------------CCCC-----C----------------------------------CCCEEECCCEEECCCCEECCCC
T ss_conf             --------------2576-----6----------------------------------7997987885987997991998


Q ss_pred             EEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             64047435013211223333100010745323
Q gi|255764481|r  166 RIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       166 ~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      +||++|+||+||+|++|||||++++|+|||+.
T Consensus       180 ~IG~gsVIgAGsVVtkdVP~~sVVaG~PAKII  211 (231)
T TIGR03532       180 RVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVI  211 (231)
T ss_pred             EECCCCEECCCCEECCCCCCCCEEEECCEEEE
T ss_conf             99999999849889565799979985481999


No 22 
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.92  E-value=2.3e-25  Score=179.13  Aligned_cols=146  Identities=23%  Similarity=0.338  Sum_probs=104.8

Q ss_pred             CCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             79975655108889859988989956559889989988989866868916846865531143422321023331222222
Q gi|255764481|r    5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGT   84 (271)
Q Consensus         5 ~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~   84 (271)
                      +..+.|||+|+|+|+|                              +|-|+++||++|.||++|+|-+         +..
T Consensus         8 g~~P~i~~~afIap~A------------------------------~viGdV~ig~~~sIw~~aVlRG---------D~~   48 (196)
T PRK13627          8 GLIPVVHPTAFVHPSA------------------------------VLIGDVIVGAGVYIGPLASLRG---------DYG   48 (196)
T ss_pred             CCCCCCCCCEEECCCC------------------------------EEEEEEEECCCCEECCCEEEEC---------CCC
T ss_conf             9587229983889999------------------------------8998499999988977708956---------887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      .++||+++.|+++++||...   +..|.||                  ++|.++.++.|.| |+|+|+++||.+++|+.+
T Consensus        49 ~I~IG~~tNIQD~~viH~~~---~~~~~IG------------------~~vtIGH~ailhg-c~Igd~~lIGmgavVldg  106 (196)
T PRK13627         49 RLIVQAGANLQDGCIMHGYC---DTDTIVG------------------ENGHIGHGAILHG-CVIGRDALVGMNSVIMDG  106 (196)
T ss_pred             CEEECCCCEECCCCEEECCC---CCCCEEC------------------CCEEECCCEEEEE-EEEECCCEECCCCEEECC
T ss_conf             17989986767983781489---9985888------------------9805878729963-499489788469799288


Q ss_pred             EEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
Q ss_conf             064047435013211223--33310001074532334420144428889999999999
Q gi|255764481|r  165 TRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAV  220 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~a  220 (271)
                      ++||++|||||||+|+..  +||++|+.|+|||+.         |-++++++..++.-
T Consensus       107 a~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~v---------R~lt~~ei~~~~~~  155 (196)
T PRK13627        107 AVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAV---------RSVSDQELHWKRLN  155 (196)
T ss_pred             CEECCCCEECCCCEECCCCCCCCCCEEEECCEEEE---------ECCCHHHHHHHHHH
T ss_conf             89999989976864579949389819987781681---------14999999998876


No 23 
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.92  E-value=2.6e-25  Score=178.76  Aligned_cols=102  Identities=29%  Similarity=0.507  Sum_probs=85.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                      +.||+++.|.++++|.       ..++||++|++..+++|+|||.||++|.++.++.++|+|+||++++||.+++|.|.+
T Consensus       100 ~~ig~G~~I~~~~~i~-------~~~~IG~~~~i~~~~~I~Hd~~ig~~~~i~~~~~i~G~v~Ig~~~~iG~~~~i~~~i  172 (201)
T TIGR03570       100 ASIGEGTVIMAGAVIN-------PDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGV  172 (201)
T ss_pred             CEECCCCEEECCCEEC-------CCCEEEEEEEECCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
T ss_conf             6787998996286987-------664780267980423214425477876899985998988797773598988988998


Q ss_pred             EEECCCEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf             64047435013211223333100010745
Q gi|255764481|r  166 RIGKYAFIGGMTGVVHDVIPYGILNGNPG  194 (271)
Q Consensus       166 ~IG~~a~ig~gs~V~kdVpp~~~~~G~pa  194 (271)
                      +||++|+|||||+|+||||+.+++.|+||
T Consensus       173 ~Ig~~~~Igags~V~~~v~~~~~~~G~PA  201 (201)
T TIGR03570       173 TIGAGAIVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             EECCCCEECCCCEEECCCCCCCEEEEECC
T ss_conf             99999999979889043799979997587


No 24 
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.91  E-value=1.4e-24  Score=174.22  Aligned_cols=119  Identities=26%  Similarity=0.395  Sum_probs=98.7

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98898995655988998998898986686891684686553114342232102333122222233222222212244321
Q gi|255764481|r   22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTIN  101 (271)
Q Consensus        22 Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~  101 (271)
                      ||+||.|+|+|+|++++.||++|+|++++.|..+++||++|.|++++++..++..            +.        .  
T Consensus         1 IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~~~~~~~~------------~~--------~--   58 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP------------RS--------K--   58 (119)
T ss_pred             CCCCCEECCCCEECCCCEECCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCC------------CC--------C--
T ss_conf             9899899999899999999999699998636789998437797788633044466------------76--------4--


Q ss_pred             CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC
Q ss_conf             11122222212233200001665543310012344322345245532148606523444336506404743501321122
Q gi|255764481|r  102 RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH  181 (271)
Q Consensus       102 ~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k  181 (271)
                                 ..+            .             ...++++|+|++|||.+++|+|+++||++|+|||+|+|+|
T Consensus        59 -----------~~~------------~-------------~~~~~v~Ig~~v~IG~~~~I~~gv~IG~~~~IgagSvV~~  102 (119)
T cd03358          59 -----------IYR------------K-------------WELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             -----------CCC------------C-------------CCCCCCEECCCEEECCCCEEECCEEECCCCEECCCCEECC
T ss_conf             -----------346------------7-------------6324839878838488747789949899989977998903


Q ss_pred             CCCCCCHHHHCCCCCCC
Q ss_conf             33331000107453233
Q gi|255764481|r  182 DVIPYGILNGNPGALRG  198 (271)
Q Consensus       182 dVpp~~~~~G~pa~~~~  198 (271)
                      |||||++++|+|||+.|
T Consensus       103 dv~~~~i~~G~PAk~IG  119 (119)
T cd03358         103 DVPPYALVVGNPARIIG  119 (119)
T ss_pred             CCCCCCEEEEECCEEEC
T ss_conf             65999799974979919


No 25 
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.91  E-value=2.8e-24  Score=172.35  Aligned_cols=160  Identities=27%  Similarity=0.419  Sum_probs=136.8

Q ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             85998898995655988998998898986686891684686553114342232102333122222233222222212244
Q gi|255764481|r   19 GAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV   98 (271)
Q Consensus        19 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v   98 (271)
                      +|+|+++|.|+|+++|+++|+||++++|+|+++|..+++||++|.|+++++|+.            .+.||++|.|++++
T Consensus         1 ~a~ig~~v~I~~~avI~~~v~Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~------------~~~IG~~~~I~~~~   68 (205)
T cd03352           1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYE------------GCIIGDRVIIHSGA   68 (205)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECC------------CCEECCEEEECCCE
T ss_conf             969199999999879999999999999989889999968898836600344727------------86875447771534


Q ss_pred             CCCCCCC----C--------CCCCCCCCCCCHHCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCC
Q ss_conf             3211112----2--------22221223320000166554----331001234432234524553214860652344433
Q gi|255764481|r   99 TINRGTV----E--------YGGKTIVGDNNFFLANSHVA----HDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH  162 (271)
Q Consensus        99 ~I~~gt~----~--------~~~~T~IG~~~~i~~~~hI~----Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~  162 (271)
                      .|....+    .        ..+.+.||+++.|.+++.|.    .++.||+++.+.+.+.++.+|.||++++|..++.+.
T Consensus        69 vIg~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~Ig~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~  148 (205)
T cd03352          69 VIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIA  148 (205)
T ss_pred             EECCCCCCCCCCCCCCEECCCCCCEEECCCEEECCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             86213532314798404514213189848849888627636642677478776864545255640415870750320002


Q ss_pred             CCEEEECCCEEECCCCCCCC--CCCCCHHH
Q ss_conf             65064047435013211223--33310001
Q gi|255764481|r  163 QFTRIGKYAFIGGMTGVVHD--VIPYGILN  190 (271)
Q Consensus       163 ~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~  190 (271)
                      ..++||++|++|++|.+...  |-+++++.
T Consensus       149 g~~~Igd~~~iG~~s~i~~gv~IG~~a~Vg  178 (205)
T cd03352         149 GSTTIGDNVIIGGQVGIAGHLTIGDGVVIG  178 (205)
T ss_pred             CCEEECCCCEECCCCEECCCCEECCCCEEC
T ss_conf             652497435398964882993999998998


No 26 
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91  E-value=7e-24  Score=169.82  Aligned_cols=163  Identities=20%  Similarity=0.323  Sum_probs=127.9

Q ss_pred             CCCCCCCCEECCCE------------EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC------------C
Q ss_conf             95057997565510------------88898599889899565598899899889898668689168------------4
Q gi|255764481|r    1 MSRMGNNPIIHPLA------------LVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGK------------T   56 (271)
Q Consensus         1 ~~~i~~~~~IhpsA------------~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~------------t   56 (271)
                      |++|..++.|||+|            +|.++++||+++.|+|+++|.++++||++|+|+|+++|.+.            +
T Consensus         2 ~~~IHptAiI~~~A~IG~~v~Igp~~vIg~~v~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v   81 (261)
T PRK05289          2 MAKIHPTAIVEPGAEIGENVEIGPFCVIGPDVVIGDGTEIGSHVVIDGHTTIGKNNRIFPFASIGEEPQDLKYKGEPTRL   81 (261)
T ss_pred             CCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             57408988989989999989999999999999999999997996891898889883452475337787666606985369


Q ss_pred             EEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf             68655311434223210233312222223322222221224432111122222212233200001665543310012344
Q gi|255764481|r   57 KIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIV  136 (271)
Q Consensus        57 ~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vi  136 (271)
                      .||++|.|.++++|....     ..+.....||++|.|-.++.|-       ....||++|.+.+++.++..|.||++++
T Consensus        82 ~IGd~~~Ire~vtI~rgT-----~~~~g~T~IG~~~~im~~vhIa-------Hd~~IG~~~iian~~~laG~v~Igd~v~  149 (261)
T PRK05289         82 VIGDNNTIREFVTINRGT-----VQGGGVTRIGDNNLLMAYVHVA-------HDCVVGNNVILANNATLAGHVEVGDYAI  149 (261)
T ss_pred             EECCCCEECCCCEECCCC-----CCCCCCEEECCCCEEECCCCCC-------CCCCCCCCCEECCCEEECCCEEECCCEE
T ss_conf             989977898541443661-----0588644988885440036434-------4551278716543056646079889709


Q ss_pred             CCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCC
Q ss_conf             32234524553214860652344433650640474350132
Q gi|255764481|r  137 LSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT  177 (271)
Q Consensus       137 i~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs  177 (271)
                      |+.++.+..+++||+++.+|+++.|.+.  |-.++++.+.-
T Consensus       150 iGg~~~v~q~v~IG~~a~vgagS~V~kD--Vpp~~~v~G~P  188 (261)
T PRK05289        150 IGGLSGVHQFVRIGAHAMVGGMSAVVQD--VPPYVLAEGNP  188 (261)
T ss_pred             ECCCCEECCCCEECCCEEECCCCEECCC--CCCCCEEECCC
T ss_conf             9761566488398987199976365424--79986784683


No 27 
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.91  E-value=6.5e-24  Score=170.03  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      ....|||+|.|++.+.|++++.|+|+|+|+++|.||++|+|++++.|++++.||++|+|++++.|..             
T Consensus         4 ~~~~I~p~a~I~~~v~Ig~~a~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~IG~~~~IG~~~~I~~-------------   70 (163)
T cd05636           4 IEGTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKN-------------   70 (163)
T ss_pred             EEEEECCCCEECCCEEECCCCEECCCCEEECCEEECCCCEEEECCCCCCCEEECCEEEECCCEEECC-------------
T ss_conf             2679999999989819999999999999979759989989936412269858613012055124212-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCEECCCEEECC
Q ss_conf             32222222122443211112222221223320000166554331--------0012344322345245532148606523
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC--------KLGNGIVLSNNVMIAGHVIVDDRVVFGG  157 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~--------~IG~~vii~n~~~l~G~v~Igd~~~IG~  157 (271)
                      ..|++++.+..++.+        +.+.||++++|.+++.++-..        .+.+. .+....... .+.|||+++||+
T Consensus        71 ~vi~~~~~i~~~~~i--------g~siIG~~v~IGagtvi~n~~~~~~~~~v~~~~~-~~~~~~~~~-G~vIGd~~~IG~  140 (163)
T cd05636          71 SIIMDGTKVPHLNYV--------GDSVLGENVNLGAGTITANLRFDDKPVKVRLKGE-RVDTGRRKL-GAIIGDGVKTGI  140 (163)
T ss_pred             CCCCCCCCCCCCCEE--------CCCEECCCCEECCCEEEECCCCCCCCEEEEECCE-EECCCCEEC-CCEECCCCEECC
T ss_conf             401478432775687--------7729929969889837817767886347840770-623677040-779779979998


Q ss_pred             CCCCCCCEEEECCCEEECCCCCC
Q ss_conf             44433650640474350132112
Q gi|255764481|r  158 GSAVHQFTRIGKYAFIGGMTGVV  180 (271)
Q Consensus       158 ~~~v~~~v~IG~~a~ig~gs~V~  180 (271)
                      ++++.++++||++|+||+||+|.
T Consensus       141 ns~I~~G~~IG~~a~IgaGsvVr  163 (163)
T cd05636         141 NVSLNPGVKIGPGSWVYPGCVVR  163 (163)
T ss_pred             CCEECCCEEECCCCEECCCCEEC
T ss_conf             98986995999998999997969


No 28 
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.90  E-value=9.3e-24  Score=169.05  Aligned_cols=119  Identities=25%  Similarity=0.297  Sum_probs=105.4

Q ss_pred             CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             75655108889859988989956559889989988989866868916846865531143422321023331222222332
Q gi|255764481|r    8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELL   87 (271)
Q Consensus         8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~   87 (271)
                      ..|||+|+|+++|+||+++.|+|+++|+.++.||++|.|.+++.|..++.||++|.|+|+++|++..             
T Consensus         2 ~rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i~g~~-------------   68 (139)
T cd03350           2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL-------------   68 (139)
T ss_pred             EEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC-------------
T ss_conf             0749982988999999998998899984398989872786666026866999932898886784442-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEE
Q ss_conf             22222212244321111222222122332000016655433100123443223452455321486065234443365064
Q gi|255764481|r   88 VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRI  167 (271)
Q Consensus        88 IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~I  167 (271)
                                        .+..                                  .-++.|+|++|||+++.|.+.++|
T Consensus        69 ------------------~p~~----------------------------------~~~v~IeD~~~IGa~a~V~~Gv~I   96 (139)
T cd03350          69 ------------------EPLQ----------------------------------ATPVIIEDDVFIGANCEVVEGVIV   96 (139)
T ss_pred             ------------------CCCC----------------------------------CCCCEECCCEEEEECCEEECCCEE
T ss_conf             ------------------5764----------------------------------688688799599309989468799


Q ss_pred             ECCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             047435013211223333100010
Q gi|255764481|r  168 GKYAFIGGMTGVVHDVIPYGILNG  191 (271)
Q Consensus       168 G~~a~ig~gs~V~kdVpp~~~~~G  191 (271)
                      |++|+|||||+||||+|||.++.|
T Consensus        97 G~~avIGAGsVVtkdvp~y~~~~g  120 (139)
T cd03350          97 GKGAVLAAGVVLTQSTPIYDRETG  120 (139)
T ss_pred             CCCCEECCCCEEECCCCCEEEECC
T ss_conf             999899979889189884682378


No 29 
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.90  E-value=2e-24  Score=173.26  Aligned_cols=84  Identities=29%  Similarity=0.500  Sum_probs=78.1

Q ss_pred             CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf             21223320000166554331001234432234524553214860652344433650640474350132112233331000
Q gi|255764481|r  110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL  189 (271)
Q Consensus       110 ~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~  189 (271)
                      .++||++|.+..+++|+|||.||++|.++.++.++|+|+|||+++||.+++|.|.++||++++|||||+|+||||+.+++
T Consensus       114 ~~~IG~~~~i~~~~~i~Hd~~ig~~~~i~~~~~i~g~v~Ig~~~~iG~~~~i~~~i~Ig~~~~igags~v~~~i~~~~~~  193 (197)
T cd03360         114 DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVV  193 (197)
T ss_pred             CCCCCCEEEECCCHHCCCCCCCCCCCEECCCEEECCCEEEEEECCCCCCCEECCCCEECCCCEECCCCEEEEECCCCEEE
T ss_conf             65304368987700105315013101066723677830891216298998987998999999999799891256999099


Q ss_pred             HHCC
Q ss_conf             1074
Q gi|255764481|r  190 NGNP  193 (271)
Q Consensus       190 ~G~p  193 (271)
                      .|+|
T Consensus       194 ~G~P  197 (197)
T cd03360         194 VGNP  197 (197)
T ss_pred             EECC
T ss_conf             9309


No 30 
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.90  E-value=1e-23  Score=168.80  Aligned_cols=162  Identities=19%  Similarity=0.357  Sum_probs=137.9

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC------------CCEEEEEEECCCCCE
Q ss_conf             50579975655108889859988989956559889989988989866868916------------846865531143422
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG------------KTKIGDFTKVFPMAV   69 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g------------~t~IG~~~~I~~~a~   69 (271)
                      ++|++++.|.|.|+|.++++||+++.|+|+++|.++++||++|+|+++++|.+            .+.||++|.|.++++
T Consensus        12 A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG~~~~Ire~vt   91 (254)
T cd03351          12 AKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVT   91 (254)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCC
T ss_conf             99999799999989999999999999979968919979776525605753477876767379867699799778995330


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32102333122222233222222212244321111222222122332000016655433100123443223452455321
Q gi|255764481|r   70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        70 Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~I  149 (271)
                      |.-..     ........||++|.|-.++.|.       ....||+++.+..++.++..|.||++++|+.++.+..+++|
T Consensus        92 I~rgt-----~~~~~~T~IG~~~~im~~~HIa-------Hdc~IG~~~iian~~~laGhv~Igd~a~IGg~~~v~q~v~I  159 (254)
T cd03351          92 IHRGT-----AQGGGVTRIGNNNLLMAYVHVA-------HDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRI  159 (254)
T ss_pred             CCCCC-----CCCCCCEEECCCCEEEECCCCC-------CCCCCCCCEEEECCCCCCCCEEECCCCEECCCCEECCCCEE
T ss_conf             23674-----3788755978885782025445-------67733797599334455685698998489883677598199


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCC
Q ss_conf             4860652344433650640474350132
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMT  177 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs  177 (271)
                      |++++||+++.|.+.  |-.++++.+.-
T Consensus       160 G~~a~Igags~V~kD--Vpp~~~v~G~P  185 (254)
T cd03351         160 GRHAMVGGGSGVVQD--VPPYVIAAGNR  185 (254)
T ss_pred             CCCEEECCCCEEECC--CCCCCEECCCC
T ss_conf             966199767456113--69872651796


No 31 
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.90  E-value=6.1e-24  Score=170.22  Aligned_cols=159  Identities=23%  Similarity=0.390  Sum_probs=115.0

Q ss_pred             CCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             79975655108889859988989956559889989988989866868916846865531143422321023331222222
Q gi|255764481|r    5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGT   84 (271)
Q Consensus         5 ~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~   84 (271)
                      +..+.|||+|+|+|+|                              +|.|+++||+++.|||+|+|.+|         .+
T Consensus         9 ~~~P~i~~~a~Va~~A------------------------------~viGdV~Ig~~vsIw~~aVlRgD---------~~   49 (176)
T COG0663           9 GLSPKIDPTAFVAPSA------------------------------TVIGDVRIGAGVSIWPGAVLRGD---------VE   49 (176)
T ss_pred             CCCCCCCCCEEECCCC------------------------------EEEEEEEECCCCEECCCEEEECC---------CC
T ss_conf             8798789862877999------------------------------79985999999788776389746---------77


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      .+.||+++.|+++|++|...   +                  +.+.||++|.++.++.|.| |+|+|+++||.+++|+.+
T Consensus        50 ~I~IG~~tNIQDg~ViH~~~---~------------------~p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmgA~vldg  107 (176)
T COG0663          50 PIRIGARTNIQDGVVIHADP---G------------------YPVTIGDDVTIGHGAVVHG-CTIGDNVLIGMGATVLDG  107 (176)
T ss_pred             CEEECCCCEECCCEEEECCC---C------------------CCEEECCCCEECCCCEEEE-EEECCCCEEECCCEEECC
T ss_conf             56987885603783895279---9------------------9929779958857658988-598788589138667578


Q ss_pred             EEEECCCEEECCCCCCC--CCCCCCHHHHCCCCCCC-CCCCHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             06404743501321122--33331000107453233-44201444288899999999999999
Q gi|255764481|r  165 TRIGKYAFIGGMTGVVH--DVIPYGILNGNPGALRG-VNVVAMRRAGFSRDTIHLIRAVYKQI  224 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~k--dVpp~~~~~G~pa~~~~-~N~~glkR~g~s~e~i~~l~~ayr~l  224 (271)
                      ++||++|+|||||+|+.  .+|+++++.|.|||... ++..-++....+.+.+..+++.|+.-
T Consensus       108 a~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~~Yv~~~~~~~~~  170 (176)
T COG0663         108 AVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAENYVKLADRYLAG  170 (176)
T ss_pred             CEECCCCEECCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             698898698668700588377997596237401440288667666667489999988877521


No 32 
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.90  E-value=1.6e-23  Score=167.66  Aligned_cols=161  Identities=20%  Similarity=0.330  Sum_probs=135.0

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC------------CCEEEEEEECCCCCE
Q ss_conf             50579975655108889859988989956559889989988989866868916------------846865531143422
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG------------KTKIGDFTKVFPMAV   69 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g------------~t~IG~~~~I~~~a~   69 (271)
                      ++|++++.|.|.++|.++++||++++|+|+++|+++++||++|+|+++++|..            .+.||+++.|.++++
T Consensus        13 A~Ig~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IGd~~~Ire~~t   92 (256)
T PRK12461         13 AKLGEGVEIGPFAVIGADVEIGDGTWIMPHAVILGWTRIGKNNKIHQGAVVGDEPQDFGYKGEESHLIIGDNNVIREGVT   92 (256)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEECCCCC
T ss_conf             99999999999999999999999999949818919989997439975431176333444158620699899878798755


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32102333122222233222222212244321111222222122332000016655433100123443223452455321
Q gi|255764481|r   70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        70 Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~I  149 (271)
                      |--..      ...+...||++|.|-.++.|       .....||++|.+.+++.++-.|.|||+++|+.++.+.++++|
T Consensus        93 I~rgt------~~~~~T~IG~~~~im~~vhI-------aHd~~IG~~~iian~~~laG~v~Igd~v~iGg~~~v~q~v~I  159 (256)
T PRK12461         93 IHRGT------KGGTVTRIGNDNLLMANSHI-------AHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI  159 (256)
T ss_pred             CCCCC------CCCCCEEECCCCEEECCCCC-------CCCCCCCCCEEEECCEEECCCEEECCCCEECCCCEECCCCEE
T ss_conf             67861------48986698878587436433-------464313677067222023242599997299573477179799


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCC
Q ss_conf             4860652344433650640474350132
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMT  177 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs  177 (271)
                      |++|.||+++.|.+.  |-.|+++.+.-
T Consensus       160 G~~a~Ig~gS~V~kD--VPp~~~v~G~p  185 (256)
T PRK12461        160 GRLAMMAGGSRISKD--VPPYCMMAGNT  185 (256)
T ss_pred             CCCCEECCCCEEEEE--CCCCEEEECCC
T ss_conf             999699878577753--79983882687


No 33 
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.89  E-value=6.3e-23  Score=163.84  Aligned_cols=159  Identities=24%  Similarity=0.387  Sum_probs=122.2

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      ++|++++.|+|.|+|+++++||++|.|+|+|+| .+++||++|+|+++++|. ++.||++|.|++++.|...        
T Consensus        16 v~IG~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I-~~~~IG~~~~I~~~~vi~-~~~ig~~~~IG~~~~i~~~--------   85 (193)
T cd03353          16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIE-GAVIGNGATVGPFAHLRPG--------   85 (193)
T ss_pred             CEECCCCEECCCEEEECCCEECCCCEECCCEEE-CCCEECCCCEECCCEECC-CCEECCCCEECCCEEECCC--------
T ss_conf             299999999898299298599999899573457-786888874002100113-5251765266685076587--------


Q ss_pred             CCCCCCCCCCCCCCCCCC-----CCCCCCCCC----CCCCCCCCCHHCCCCCCC-------CCCCCCCCCCCCCCCCCCC
Q ss_conf             222332222222122443-----211112222----221223320000166554-------3310012344322345245
Q gi|255764481|r   82 VGTELLVGKKCVIREGVT-----INRGTVEYG----GKTIVGDNNFFLANSHVA-------HDCKLGNGIVLSNNVMIAG  145 (271)
Q Consensus        82 ~~~~v~IG~~~~Ire~v~-----I~~gt~~~~----~~T~IG~~~~i~~~~hI~-------Hd~~IG~~vii~n~~~l~G  145 (271)
                          +.|++++.|+.++.     +.+++..+.    +.+.||++|.+++++-++       |.+.|||+|+|+.++.+.+
T Consensus        86 ----~~I~~~~~iG~~v~i~~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~~g~~~~~t~IGd~v~IG~~~~i~~  161 (193)
T cd03353          86 ----TVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVA  161 (193)
T ss_pred             ----CEECCEEEECCCEEEECCCCCCCCEECCEEECCCCEECCCCEECCCEEEECCCCCCCCCCEECCCCEECCCCEEEC
T ss_conf             ----6887516742535764443368848772446188567778888667588734343356234335618988987989


Q ss_pred             CCEECCCEEECCCCCCCCCEEEECCCEEECC
Q ss_conf             5321486065234443365064047435013
Q gi|255764481|r  146 HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM  176 (271)
Q Consensus       146 ~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g  176 (271)
                      +++|||+++||+++.|.+.+  -.++|+=+.
T Consensus       162 ~v~IG~~a~Igags~V~kdV--pp~~lvvg~  190 (193)
T cd03353         162 PVTIGDGATIAAGSTITKDV--PPGALAIAR  190 (193)
T ss_pred             CEEECCCCEECCCCEECCCC--CCCCEEEEE
T ss_conf             83999998998698888423--999789962


No 34 
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.88  E-value=3.5e-23  Score=165.44  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=63.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf             3322222221224432111122---2222122332000016655433100123443223452455321486065234443
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVE---YGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV  161 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~---~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v  161 (271)
                      .++||++|.|+|+++|+.....   .+..+.||+++      +++|+|.|.             .++|||+++||.++.|
T Consensus        38 ~I~IG~~~nIqd~~~I~~~~~~~~~~g~~~~IG~~~------~i~~g~~ih-------------~~~IG~~~lIg~~a~V   98 (164)
T cd04646          38 PIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNN------VFEVGCKCE-------------ALKIGNNNVFESKSFV   98 (164)
T ss_pred             CEEECCCCEECCCEEEECCCCCCCCCCCCEEECCCC------EECCCEEEE-------------CCEECCCCEECCCCEE
T ss_conf             889899966669859941787777899887988998------886781995-------------5597678889689899


Q ss_pred             CCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCC
Q ss_conf             365064047435013211223--333100010745323
Q gi|255764481|r  162 HQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALR  197 (271)
Q Consensus       162 ~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~  197 (271)
                      +.+++||++|+|||+|.|+.+  +||++++.|+||+.+
T Consensus        99 ~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~  136 (164)
T cd04646          99 GKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR  136 (164)
T ss_pred             CCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEE
T ss_conf             99989999989998989289979299859978874781


No 35 
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.88  E-value=2.5e-22  Score=160.14  Aligned_cols=150  Identities=19%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             CCEECCCCEECC--CCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf             989866868916--846865531143422321023331222222332222222122443211112222221223320000
Q gi|255764481|r   43 GVELISHCVVAG--KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL  120 (271)
Q Consensus        43 ~~~I~~~v~I~g--~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~  120 (271)
                      +.+|..++.|.|  +++||++|.||++|+|.++         ...+.||++|.|+++++|+....... .+.        
T Consensus         7 gn~I~k~a~I~G~~nI~IG~~ssI~~~avirGD---------~~~I~IG~~~~I~d~~~I~~~~~~~~-~~~--------   68 (161)
T cd03359           7 GNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGD---------LATVSIGRYCILSEGCVIRPPFKKFS-KGV--------   68 (161)
T ss_pred             CCEECCCCEEECCCCEEECCCCEECCCCEEECC---------CCCEEECCCCEECCCCEEECCCCCCC-CCC--------
T ss_conf             995877629978877599998789999689678---------86549999858889989924644357-788--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCCCCC
Q ss_conf             16655433100123443223452455321486065234443365064047435013211223--3331000107453233
Q gi|255764481|r  121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGALRG  198 (271)
Q Consensus       121 ~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~~~~  198 (271)
                          ..+++.||++|+++.++.+.+ ++|+++++||.++.+.+++.||++|+|+++|+|..+  ||||++++|+|||+. 
T Consensus        69 ----~~~p~~IGd~v~Ig~~~~i~~-~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i-  142 (161)
T cd03359          69 ----AFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFI-  142 (161)
T ss_pred             ----CCCCCEECCCEEECCCEEEEC-CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEE-
T ss_conf             ----887728489879899828848-89667715579819949979999989988989889989899819985180895-


Q ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             44201444288899999999999999
Q gi|255764481|r  199 VNVVAMRRAGFSRDTIHLIRAVYKQI  224 (271)
Q Consensus       199 ~N~~glkR~g~s~e~i~~l~~ayr~l  224 (271)
                              +-+++.+...|++.-+.+
T Consensus       143 --------~~l~e~~~~~~~~~~~~y  160 (161)
T cd03359         143 --------GELPECTQELMEEETKEY  160 (161)
T ss_pred             --------EECCHHHHHHHHHHHHHC
T ss_conf             --------769999999999989862


No 36 
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of  carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.86  E-value=4.4e-22  Score=158.58  Aligned_cols=133  Identities=22%  Similarity=0.326  Sum_probs=88.4

Q ss_pred             CCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             86891684686553114342232102333122222233222222212244321111222222122332000016655433
Q gi|255764481|r   49 HCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD  128 (271)
Q Consensus        49 ~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd  128 (271)
                      +++|.|+++||++|.|||+|+|.++        +...+.||+++.|+++++||..   .                  ++.
T Consensus        14 ~A~viGdV~ig~~~sIw~~aviRgD--------~~~~I~IG~~~nIqD~~viH~~---~------------------~~~   64 (167)
T cd00710          14 TAVVIGDVIIGDNVFVGPGASIRAD--------EGTPIIIGANVNIQDGVVIHAL---E------------------GYS   64 (167)
T ss_pred             CCEEEEEEEECCCCEECCCCEEECC--------CCCCEEECCCCCCCCCEEEECC---C------------------CCC
T ss_conf             9989970899999999888789478--------8887698887434777078225---7------------------667


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC-CCCCCCHH-------HHCCCCCCCCC
Q ss_conf             10012344322345245532148606523444336506404743501321122-33331000-------10745323344
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH-DVIPYGIL-------NGNPGALRGVN  200 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k-dVpp~~~~-------~G~pa~~~~~N  200 (271)
                      +.||++|.+++++.|.|+|+|||+++||.+++++. ++||++|+||++|+|.. .+||..++       .|.||+.    
T Consensus        65 ~~IG~~vtIgh~a~ihG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g~~i~~g~~v~~G~~v~~~~pa~~----  139 (167)
T cd00710          65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQTQADA----  139 (167)
T ss_pred             EEECCCCEECCCCEECCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEEECCCCCCCCEECCCCEEECCCCHHH----
T ss_conf             49779828989848812049839988988989982-5976998998898884778399989558828836996697----


Q ss_pred             CCHHHHCCCCHHHHHHHHHH
Q ss_conf             20144428889999999999
Q gi|255764481|r  201 VVAMRRAGFSRDTIHLIRAV  220 (271)
Q Consensus       201 ~~glkR~g~s~e~i~~l~~a  220 (271)
                           -+.++++++..+++.
T Consensus       140 -----~~~lt~~~~~~~~~~  154 (167)
T cd00710         140 -----LPDVTDSAREFNEKV  154 (167)
T ss_pred             -----CCCCCHHHHHHHHHH
T ss_conf             -----337999999999999


No 37 
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137   This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.86  E-value=9.3e-22  Score=156.54  Aligned_cols=227  Identities=19%  Similarity=0.326  Sum_probs=151.1

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC------------CCEEEEEEECCCCCE
Q ss_conf             50579975655108889859988989956559889989988989866868916------------846865531143422
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG------------KTKIGDFTKVFPMAV   69 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g------------~t~IG~~~~I~~~a~   69 (271)
                      |+|+++..|-|.|+|.++|+||+||+|.++++|...++||+||+|.|+++|.+            .+.||++|+|-.|++
T Consensus        11 A~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG~~n~IRE~VT   90 (257)
T TIGR01852        11 AEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIGDNNTIREFVT   90 (257)
T ss_pred             CEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEECCCCEEEEEEE
T ss_conf             68289857801888789758868858757368967708789988807607679885650148701799889656975578


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32102333122222233222222212244321111222222122332000016655433100123443223452455321
Q gi|255764481|r   70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        70 Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~I  149 (271)
                      |-...     ......+.|||||.|-.|+.|-       ..=+|||+|-|-.++.+|-.+.|||+++|+-.+.+..-|+|
T Consensus        91 i~~GT-----~~g~g~T~iG~~nllMAysHvA-------HDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRI  158 (257)
T TIGR01852        91 INRGT-----KSGGGVTSIGNNNLLMAYSHVA-------HDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRI  158 (257)
T ss_pred             ECCCC-----CCCCCEEEECCCCEECCCCEEE-------ECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEE
T ss_conf             50662-----5888889988876572053561-------24368881698136312227998889997789721101330


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             48606523444336506404743501321122333310001074532334420144428889999999999999972799
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGD  229 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~  229 (271)
                      |.+|.|||.|.|-+-  |=-|+|+.+.|.        ....|  =-+.||.+-|+.|.-. ..-.+++|..||---.-..
T Consensus       159 G~~aMigG~s~v~~D--vpPY~~~~G~~~--------a~l~G--lN~vGLrR~Gf~~~~i-~~i~~ayr~lfr~~~~~~~  225 (257)
T TIGR01852       159 GRYAMIGGLSAVSKD--VPPYGLVEGNSR--------AVLRG--LNIVGLRRRGFDREEI-TAIKKAYRLLFRSGLPLQE  225 (257)
T ss_pred             HHHHHHHHHCCCCCC--CCCCEEECCCCC--------CEEEE--EEEEEEECCCCCHHHH-HHHHHHHHHHHCCCCCHHH
T ss_conf             002322120024678--776178637875--------33788--7013221378798999-9999998876179989899


Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             899999999964258989999999
Q gi|255764481|r  230 SIYKNAGAIREQNVSCPEVSDIIN  253 (271)
Q Consensus       230 ~l~e~l~~l~~~~~~~~~v~~~~~  253 (271)
                      .+++.+|+-.++.++..++=+|+.
T Consensus       226 ~~~~v~e~P~~~~~~v~~~~~FI~  249 (257)
T TIGR01852       226 ALQQVAEEPYEDNPEVKEIVDFIR  249 (257)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf             999998351337757999999860


No 38 
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.85  E-value=3.2e-21  Score=153.17  Aligned_cols=68  Identities=35%  Similarity=0.537  Sum_probs=62.9

Q ss_pred             CCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHH
Q ss_conf             5532148606523444336506404743501321122333310001074532334420144428889999999999
Q gi|255764481|r  145 GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAV  220 (271)
Q Consensus       145 G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~a  220 (271)
                      +.++|||+||||++++|+++++||++|+|||+|+|+||||||++++|+|||+.        |..|+++.+..|.+.
T Consensus        72 ~~i~Ig~~vwIG~n~~Il~GV~IG~gavIgAgSvVtkdvp~~~i~~G~PAk~i--------k~Rf~~~~~~~l~~~  139 (145)
T cd03349          72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVI--------RYRFDEETIERLLAL  139 (145)
T ss_pred             CCEEECCCEEECCCCEEECCCEECCCCEEECCCEECCCCCCCCEEEEECCEEE--------ECCCCHHHHHHHHHC
T ss_conf             99798899699998889588096788689289789704699949983388788--------155999999999876


No 39 
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.85  E-value=1.3e-21  Score=155.69  Aligned_cols=157  Identities=16%  Similarity=0.214  Sum_probs=105.0

Q ss_pred             EECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC---CCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             565510888985998898995655988998998898986686891---68468655311434223210233312222223
Q gi|255764481|r    9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVA---GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         9 ~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~---g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      .|||+|+|+|.|.|-.+|+            ||++|.|+|+++|+   +..+||++|.|..+++|...++  .+.+++..
T Consensus         1 kI~~~a~I~~~A~iiGdV~------------IG~~~sI~p~avIrgd~g~I~IG~~~nIqd~~~I~~~~~--~~~~~g~~   66 (164)
T cd04646           1 KIAPGAVVCQESEIRGDVT------------IGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKP--KDPAEPKP   66 (164)
T ss_pred             CCCCCCEECCCCEEEEEEE------------ECCCCEECCCCEEEECCCCEEECCCCEECCCEEEECCCC--CCCCCCCC
T ss_conf             9489879999999982179------------999998995759981437889899966669859941787--77789988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             32222222122443211112222221223320000166554331001234432234524553214860652344433650
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                      +.||++++|+++|++|.        ..||++|+|+.+++|.++|+||++|++++++.+.++.++.|++.+.|.....+..
T Consensus        67 ~~IG~~~~i~~g~~ih~--------~~IG~~~lIg~~a~V~~ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~~~  138 (164)
T cd04646          67 MIIGSNNVFEVGCKCEA--------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ  138 (164)
T ss_pred             EEECCCCEECCCEEEEC--------CEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEEEC
T ss_conf             79889988867819955--------5976788896898999998999998999898928997929985997887478121


Q ss_pred             EEECCCEEECCCCCCCCCCCCC
Q ss_conf             6404743501321122333310
Q gi|255764481|r  166 RIGKYAFIGGMTGVVHDVIPYG  187 (271)
Q Consensus       166 ~IG~~a~ig~gs~V~kdVpp~~  187 (271)
                      .--..++-.-...+.|.+|-|.
T Consensus       139 ~~~~~~~~~~~~~l~~~~p~y~  160 (164)
T cd04646         139 TDRPKPQTLQLDFLRKILPNYH  160 (164)
T ss_pred             CCCCCCHHHHHHHHHHHCHHHH
T ss_conf             5676312689999987640122


No 40 
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882    N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc.    The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=99.83  E-value=1.8e-20  Score=148.44  Aligned_cols=146  Identities=27%  Similarity=0.418  Sum_probs=117.2

Q ss_pred             EECCC-EEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             56551-08889859988989956559889989988989866868916846865531143422321023331222222332
Q gi|255764481|r    9 IIHPL-ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELL   87 (271)
Q Consensus         9 ~Ihps-A~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~   87 (271)
                      +.+|. -+|+++++||.||+|.|+++|+++|+||+||+|||+|+|. |+.||+++.|.|+|++..             ..
T Consensus       260 ~~dP~~~~i~~~v~~G~Dv~I~~~v~leG~v~iG~~v~IGp~~~I~-ns~I~~~~~I~~~s~~e~-------------~~  325 (461)
T TIGR01173       260 LIDPARTDIRGTVEIGQDVVIDPNVILEGKVQIGDDVVIGPGCVIK-NSVIGSNAVIKPYSVLEG-------------SE  325 (461)
T ss_pred             EECCCEEEECCCEEECCEEEECCCCEECCEEEECCCEEECCCCEEE-EEEECCCCEEEEEEECCC-------------CE
T ss_conf             9868337873547987716975583883407987870788985899-728868855888884146-------------78


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCC
Q ss_conf             2222221224432111122222212233-----20000166554331001234432234524553214860652344433
Q gi|255764481|r   88 VGKKCVIREGVTINRGTVEYGGKTIVGD-----NNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH  162 (271)
Q Consensus        88 IG~~~~Ire~v~I~~gt~~~~~~T~IG~-----~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~  162 (271)
                      ||++|.+++|+.+-++|... ..++|||     +..|+.+|...|=++||             .++||.++.||++|..-
T Consensus       326 ig~~~~vGPFArLRP~~~L~-~~~hiGNFVE~Kna~iG~gsKA~HLsYlG-------------DAeiG~~vNiGAGtITc  391 (461)
T TIGR01173       326 IGEGCDVGPFARLRPGSVLG-AGVHIGNFVEVKNARIGEGSKAGHLSYLG-------------DAEIGSNVNIGAGTITC  391 (461)
T ss_pred             ECCCCEECCCCCCCCCCHHH-CCCEEEEEEEEECCEECCCCCCCCCCEEE-------------EEEECCCCEECCEEEEE
T ss_conf             61564027730018643211-77816025865247618864423143332-------------02507960032316899


Q ss_pred             CC-------EEEECCCEEECCCCCCCC
Q ss_conf             65-------064047435013211223
Q gi|255764481|r  163 QF-------TRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       163 ~~-------v~IG~~a~ig~gs~V~kd  182 (271)
                      .+       +.||+++|||..|...--
T Consensus       392 NYDG~nK~~T~IGd~VFiGSnt~LVAP  418 (461)
T TIGR01173       392 NYDGVNKHKTIIGDGVFIGSNTQLVAP  418 (461)
T ss_pred             ECCCCCCCCCEECCCCEECCCCEEECC
T ss_conf             327962203486488787767604554


No 41 
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.82  E-value=9.9e-21  Score=150.13  Aligned_cols=56  Identities=27%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             CCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             52455321486065234443365064047435013211223333100010745323
Q gi|255764481|r  142 MIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       142 ~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      ..+..++|||+||||++++|.++++||++|+|||||+|+|||||+++++|+|||+.
T Consensus       114 ~~~~PI~Igd~vWIG~~~~IlpGVtIG~~~vIgAGsVVtkdip~~~v~~GnPArvi  169 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI  169 (169)
T ss_pred             CCCCCEEECCCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCEEEEEECCEEC
T ss_conf             52455698974362899789099799999999889879746599919997586989


No 42 
>PRK10502 putative colanic acid biosynthesis acetyltransferase WcaF; Provisional
Probab=99.82  E-value=4.2e-20  Score=146.17  Aligned_cols=122  Identities=20%  Similarity=0.256  Sum_probs=81.5

Q ss_pred             CCEECCCCEECCCCEE--CCCCEECCCCEECCCCEEC--CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8599889899565598--8998998898986686891--68468655311434223210233312222223322222221
Q gi|255764481|r   19 GAVIGPNSLIGPFCCV--GSEVEIGAGVELISHCVVA--GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVI   94 (271)
Q Consensus        19 ~a~Ig~~v~Igp~~~I--~~~v~IG~~~~I~~~v~I~--g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~I   94 (271)
                      +|+||++|.|.|.+.|  .-+.+|||++.|+++|.|.  +..+||++|.|.+++.|.                       
T Consensus        52 GAkIG~~v~I~p~v~I~~PwnL~IGd~~~Ig~~v~i~~~~~I~IG~~v~Isq~v~l~-----------------------  108 (179)
T PRK10502         52 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVVLYTLGEITIGAHCVISQKSYLC-----------------------  108 (179)
T ss_pred             CCEECCCCEECCCCEEEECCCEEECCCCEECCCCEEEECCCCEECCCEEECCCCEEE-----------------------
T ss_conf             886799988999657950430798896578898189848961798841277971896-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEE
Q ss_conf             22443211112222221223320000166554331001234432234524553214860652344433650640474350
Q gi|255764481|r   95 REGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIG  174 (271)
Q Consensus        95 re~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig  174 (271)
                             .++.                      |-.-.+      --.....++|||+||||+++.|.++++||++|+||
T Consensus       109 -------t~sH----------------------d~~~~~------~~l~~~pI~Igd~~wIga~a~I~pGv~Ig~gavig  153 (179)
T PRK10502        109 -------TGSH----------------------DYSSPH------FDLNAAPIVIGEGCWLATDVFVAPGVTIGDGAVVG  153 (179)
T ss_pred             -------CCCC----------------------CCCCCC------CCCCCCCCEECCCEEECCCCEEECCCEECCCCEEC
T ss_conf             -------3889----------------------976766------67324885858996999996990889999997995


Q ss_pred             CCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             132112233331000107453233
Q gi|255764481|r  175 GMTGVVHDVIPYGILNGNPGALRG  198 (271)
Q Consensus       175 ~gs~V~kdVpp~~~~~G~pa~~~~  198 (271)
                      |+|+|+||+||++++.|+|||..+
T Consensus       154 A~SvV~kdv~~~~i~~G~PA~~ik  177 (179)
T PRK10502        154 ARSSVFKSLPANTVCRGNPAVVIR  177 (179)
T ss_pred             CCCEEEEECCCCCEEEECCCEEEE
T ss_conf             499892177999699931847871


No 43 
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.82  E-value=2.2e-20  Score=147.93  Aligned_cols=124  Identities=19%  Similarity=0.307  Sum_probs=81.8

Q ss_pred             EECCCCEECC--CCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9988989956--55988998998898986686891684686553114342232102333122222233222222212244
Q gi|255764481|r   21 VIGPNSLIGP--FCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV   98 (271)
Q Consensus        21 ~Ig~~v~Igp--~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v   98 (271)
                      .+|+++.|.|  +|--|-|..||+++.+..+++|...                            ..+.|||++.|+.+|
T Consensus        57 ~~g~~~~IepPF~cdYG~NI~iG~~~fiN~n~~ilD~----------------------------~~I~IGd~v~iGPnV  108 (203)
T PRK09527         57 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDD----------------------------YTVTIGDNVLIAPNV  108 (203)
T ss_pred             CCCCCCEEECCEEEECCCCEEECCCEEECCCCEEEEC----------------------------CCEEECCCEEECCCC
T ss_conf             2599978969978725479697798798688389957----------------------------637998972886997


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCC
Q ss_conf             32111122222212233200001665543310012344322345245532148606523444336506404743501321
Q gi|255764481|r   99 TINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTG  178 (271)
Q Consensus        99 ~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~  178 (271)
                      +|...+......                  -+       ..+...+..++|||+||||++++|.++++||++|+|||||+
T Consensus       109 ~i~t~~Hp~~~~------------------~R-------~~~~~~~~pi~Ig~~vwIG~~~~I~pGv~IG~~~vigAgsv  163 (203)
T PRK09527        109 TLSVTGHPVHHE------------------LR-------KNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSV  163 (203)
T ss_pred             EEECCCCCCCHH------------------HH-------HCCCCCCCCEEECCEEEECCCCEECCCCEECCCCEECCCCE
T ss_conf             893698988988------------------97-------33876688859998689899999909929999979914988


Q ss_pred             CCCCCCCCCHHHHCCCCCC
Q ss_conf             1223333100010745323
Q gi|255764481|r  179 VVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       179 V~kdVpp~~~~~G~pa~~~  197 (271)
                      |+|||||+++++|+|||+.
T Consensus       164 Vtkdip~~~v~~G~Parvi  182 (203)
T PRK09527        164 VTKDIPPNVVAAGVPCRVI  182 (203)
T ss_pred             ECCCCCCCCEEEEECCEEE
T ss_conf             8530699829996282889


No 44 
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.82  E-value=4.9e-20  Score=145.79  Aligned_cols=143  Identities=23%  Similarity=0.319  Sum_probs=109.6

Q ss_pred             EECC-CEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             5655-108889859988989956559889989988989866868916846865531143422321023331222222332
Q gi|255764481|r    9 IIHP-LALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELL   87 (271)
Q Consensus         9 ~Ihp-sA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~   87 (271)
                      +++| +.+|++.+++|++|+|+|+++|.++|+||+||+|+++++|. ++.||++|.|.++++|.+             ..
T Consensus       254 i~dP~~~~I~~~v~ig~dv~I~~nvvi~G~v~IG~~v~Ig~g~~I~-ns~Ig~~~~I~~~S~Ie~-------------s~  319 (456)
T PRK09451        254 LRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGAGCVLK-NCVIGDDCEISPYSVVED-------------AN  319 (456)
T ss_pred             EECCCEEEEECCEEECCCEEECCCEEEECCEEECCCEEECCCEEEE-CCEECCCCEEECCEEECC-------------CE
T ss_conf             8158807770328965750775770884424757975982407985-769846878942256506-------------63


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCC
Q ss_conf             2222221224432111122222212233-----20000166554331001234432234524553214860652344433
Q gi|255764481|r   88 VGKKCVIREGVTINRGTVEYGGKTIVGD-----NNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH  162 (271)
Q Consensus        88 IG~~~~Ire~v~I~~gt~~~~~~T~IG~-----~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~  162 (271)
                      ||++|.|+.|+.+-++|... ..++||+     +..||.++.+.|=..||             ..+||+++.||+++..-
T Consensus       320 Ig~~~~IGPfA~lRp~t~i~-~~~~iGnfvEiK~s~i~~g~k~~HlsYiG-------------Da~iG~~~NiGAGtit~  385 (456)
T PRK09451        320 LGAACTIGPFARLRPGAELL-EGAHVGNFVEMKKARLGKGSKAGHLTYLG-------------DAEIGDNVNIGAGTITC  385 (456)
T ss_pred             ECCCCEECCCCCCCCCCEEC-CCCEEEEEEEEECCEECCCCEECCEEEEC-------------CCEECCCCEECCCEEEE
T ss_conf             43671688864348876236-78888228998245975897704233661-------------44765886888876997


Q ss_pred             C-------CEEEECCCEEECCCCC
Q ss_conf             6-------5064047435013211
Q gi|255764481|r  163 Q-------FTRIGKYAFIGGMTGV  179 (271)
Q Consensus       163 ~-------~v~IG~~a~ig~gs~V  179 (271)
                      .       .+.||++|+||.++.+
T Consensus       386 NyDG~~K~~t~igd~~fiGsn~~l  409 (456)
T PRK09451        386 NYDGANKFKTIIGDDVFVGSDTQL  409 (456)
T ss_pred             ECCCCCCCCCEECCCCEECCCCEE
T ss_conf             224876656487898299878448


No 45 
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.81  E-value=6.1e-21  Score=151.46  Aligned_cols=85  Identities=24%  Similarity=0.368  Sum_probs=66.4

Q ss_pred             CCCCCHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             2332000016655-433100123443223452455321486065234443365064047435013211223333100010
Q gi|255764481|r  113 VGDNNFFLANSHV-AHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNG  191 (271)
Q Consensus       113 IG~~~~i~~~~hI-~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G  191 (271)
                      ||++|+|+.+++| +|+..+++......+..+.++++|||++|||.++.|+++++||++|+|||+|+|+||+||++++.|
T Consensus        24 IG~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~IG~~~~I~~gv~Ig~~~iIga~SvV~k~i~~~~i~~G  103 (109)
T cd04647          24 IGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAG  103 (109)
T ss_pred             ECCCCEECCEEEEEEEEEECCCCCEECCCCCEECCEEEECCCEECCCEEEEECCEECCCCEECCCCEECCCCCCCCEEEE
T ss_conf             99984993508983300132887525267637189799423578898399285130898699379889148399989997


Q ss_pred             CCCCCC
Q ss_conf             745323
Q gi|255764481|r  192 NPGALR  197 (271)
Q Consensus       192 ~pa~~~  197 (271)
                      +|||+.
T Consensus       104 ~PAk~i  109 (109)
T cd04647         104 NPAKVI  109 (109)
T ss_pred             ECCEEC
T ss_conf             586999


No 46 
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.81  E-value=2.9e-20  Score=147.18  Aligned_cols=63  Identities=17%  Similarity=0.328  Sum_probs=56.2

Q ss_pred             CCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHH
Q ss_conf             2455321486065234443365064047435013211223333100010745323344201444288899
Q gi|255764481|r  143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRD  212 (271)
Q Consensus       143 l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e  212 (271)
                      -...++|||+||||++++|.++++||++|+|||+|+|++|+||+++++|+|||+.       |+..|+.+
T Consensus       127 ~~~pv~Ig~~~wIg~~~~Il~Gv~Ig~~~vvgA~SvV~~dvp~~~i~~G~PAk~I-------k~~~~~~~  189 (192)
T PRK09677        127 ESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKII-------KKYNHETK  189 (192)
T ss_pred             CCCCEEECCCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCEEEEEECCEEE-------EECCCCCC
T ss_conf             7599898999899999999199699999899169999858599919997083889-------71275223


No 47 
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.81  E-value=6.3e-20  Score=145.09  Aligned_cols=162  Identities=18%  Similarity=0.304  Sum_probs=94.1

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC------------CCEEEEEEECCCCCE
Q ss_conf             50579975655108889859988989956559889989988989866868916------------846865531143422
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG------------KTKIGDFTKVFPMAV   69 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g------------~t~IG~~~~I~~~a~   69 (271)
                      ++|+.+..|-|.++|.|+++|+++++|+++++|...++||++++|.|++.|.+            .+.||++|.|-.+++
T Consensus        16 A~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vT   95 (260)
T COG1043          16 AEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVT   95 (260)
T ss_pred             CCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf             88289988883379889719889958834379967707778987911104289875450279842799889975866889


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             32102333122222233222222212244321111222222122332000016655433100123443223452455321
Q gi|255764481|r   70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV  149 (271)
Q Consensus        70 Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~I  149 (271)
                      |-...     ........|||||.|-.++.|-       ..-+|||+|.|-.++.+|-.+.|||+++++--+.+..-|+|
T Consensus        96 i~~GT-----~~g~g~T~IGdnnl~May~HVA-------HDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQF~rI  163 (260)
T COG1043          96 IHRGT-----VQGGGVTRIGDNNLIMAYAHVA-------HDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRI  163 (260)
T ss_pred             EECCC-----CCCCEEEEECCCCEEEEEEEEE-------CCCEECCCEEEECCCEEECEEEECCEEEECCCCEEEEEEEE
T ss_conf             86154-----4786159977887898731031-------34445671799668668540788778997475237778897


Q ss_pred             CCCEEECCCCCCCCCEEEECCCEEECCC
Q ss_conf             4860652344433650640474350132
Q gi|255764481|r  150 DDRVVFGGGSAVHQFTRIGKYAFIGGMT  177 (271)
Q Consensus       150 gd~~~IG~~~~v~~~v~IG~~a~ig~gs  177 (271)
                      |++++||+.+.|.|.+  =.|+|+.++-
T Consensus       164 G~~amiGg~S~v~~DV--pPy~~~~Gn~  189 (260)
T COG1043         164 GAHAMIGGLSAVSQDV--PPYVIASGNH  189 (260)
T ss_pred             CCHHEECCCHHHCCCC--CCEEEECCCC
T ss_conf             4011234410103677--9838852870


No 48 
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.81  E-value=1.4e-19  Score=142.89  Aligned_cols=134  Identities=19%  Similarity=0.323  Sum_probs=99.9

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEEC---CCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             057997565510888985998898995655988---99899889898668689168468655311434223210233312
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVG---SEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYH   79 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~---~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~   79 (271)
                      +|+.+++|||+|.|..+++||+++.|+|+|+|.   ..+.||++|.|+++++|..                  .      
T Consensus         1 ~I~~~a~I~p~A~I~G~V~IG~~~~I~~~~~I~~d~~~i~IG~~~~I~~~~~Ih~------------------~------   56 (153)
T cd04645           1 EIDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHV------------------D------   56 (153)
T ss_pred             CCCCCEEECCCCEEECCEEECCCCEECCCCEEECCCCCEEECCCCEECCCCCCCC------------------C------
T ss_conf             9189819999999977269989999965838424666359999989896854352------------------5------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCC
Q ss_conf             22222332222222122443211112222221223320000166554331001234432234524553214860652344
Q gi|255764481|r   80 NFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGS  159 (271)
Q Consensus        80 ~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~  159 (271)
                        ....+.||+++.|..++.+                          |+|.||++|+++.++.+...++||++++||+++
T Consensus        57 --~~~~~~IG~~v~Ig~~~~i--------------------------~g~~Ig~~~~IG~~a~I~~gv~IG~~~vIgags  108 (153)
T cd04645          57 --PGYPTIIGDNVTVGHGAVL--------------------------HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGS  108 (153)
T ss_pred             --CCCCCEECCCCEECCCCEE--------------------------ECEEEEEEEEECCCCEECCCCEECCCCEECCCC
T ss_conf             --9999798999899999599--------------------------241873004770543985699988997994498


Q ss_pred             CCCCCEEEECCCEEECC-CCCCCCCCCCCH
Q ss_conf             43365064047435013-211223333100
Q gi|255764481|r  160 AVHQFTRIGKYAFIGGM-TGVVHDVIPYGI  188 (271)
Q Consensus       160 ~v~~~v~IG~~a~ig~g-s~V~kdVpp~~~  188 (271)
                      .|.++..|.+++++++. |.+.|+++|.-+
T Consensus       109 vV~~~~~vp~~~v~~G~PAr~ir~~~~~e~  138 (153)
T cd04645         109 LVPPGKVIPPGSLVAGSPAKVVRELTDEEI  138 (153)
T ss_pred             EECCCCEECCCCEEEECCCEEECCCCHHHH
T ss_conf             974897969985999628379715999999


No 49 
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.80  E-value=1.3e-19  Score=143.09  Aligned_cols=155  Identities=15%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCC--CCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023--3312
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQ--SKYH   79 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~q--d~~~   79 (271)
                      +.|..++.|++..+|+++|+|++++.|++.++|+++++||++|.|.+++.|..+++||.++.|. .++|+....  +..|
T Consensus         6 ~~I~p~a~I~~~v~Ig~~a~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~IG~~~~IG~~~~I~-~~vi~~~~~i~~~~~   84 (163)
T cd05636           6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-NSIIMDGTKVPHLNY   84 (163)
T ss_pred             EEECCCCEECCCEEECCCCEECCCCEEECCEEECCCCEEEECCCCCCCEEECCEEEECCCEEEC-CCCCCCCCCCCCCCE
T ss_conf             7999999998981999999999999997975998998993641226985861301205512421-240147843277568


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCC
Q ss_conf             22222332222222122443211112222221223320000166554331001234432234524553214860652344
Q gi|255764481|r   80 NFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGS  159 (271)
Q Consensus        80 ~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~  159 (271)
                      -+   ...||+++.|+.++++...... .....+.-+..+....+..+.+.|||+|.++.++.+...++|+++++||+++
T Consensus        85 ig---~siIG~~v~IGagtvi~n~~~~-~~~~~v~~~~~~~~~~~~~~G~vIGd~~~IG~ns~I~~G~~IG~~a~IgaGs  160 (163)
T cd05636          85 VG---DSVLGENVNLGAGTITANLRFD-DKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGC  160 (163)
T ss_pred             EC---CCEECCCCEECCCEEEECCCCC-CCCEEEEECCEEECCCCEECCCEECCCCEECCCCEECCCEEECCCCEECCCC
T ss_conf             77---7299299698898378177678-8634784077062367704077977997999898986995999998999997


Q ss_pred             CC
Q ss_conf             43
Q gi|255764481|r  160 AV  161 (271)
Q Consensus       160 ~v  161 (271)
                      +|
T Consensus       161 vV  162 (163)
T cd05636         161 VV  162 (163)
T ss_pred             EE
T ss_conf             96


No 50 
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974    Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.80  E-value=3e-20  Score=147.12  Aligned_cols=151  Identities=22%  Similarity=0.327  Sum_probs=113.3

Q ss_pred             CCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf             79975655108889859988989956559889989988989866868916846865531143422321023331222222
Q gi|255764481|r    5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGT   84 (271)
Q Consensus         5 ~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~   84 (271)
                      |-.+.+||+|||||+|.|                              -|++.||++|.|+|.|+|         +|+..
T Consensus         6 GLtPVVhp~ayVHP~AVL------------------------------iGDVi~G~rcYvgPlASL---------RGDFG   46 (193)
T TIGR02287         6 GLTPVVHPEAYVHPDAVL------------------------------IGDVIVGKRCYVGPLASL---------RGDFG   46 (193)
T ss_pred             CCCCCCCCCCCCCCCEEE------------------------------EEEEEECCCCEECCCCCC---------CCCCC
T ss_conf             884656987734686378------------------------------621788795246766313---------57757


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223452455321486065234443365
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      ++++-+...|+++|..| |  -++..|.++.|      -||||..++.             .|.|+.|+.||.|++|+..
T Consensus        47 rIvl~eGAN~QD~CVMH-G--FPg~DTvVeen------GHvGHgAiLH-------------gC~vgrnaLvGMNAVVMDg  104 (193)
T TIGR02287        47 RIVLKEGANVQDTCVMH-G--FPGQDTVVEEN------GHVGHGAILH-------------GCRVGRNALVGMNAVVMDG  104 (193)
T ss_pred             CEEEECCCCCCCCCEEC-C--CCCCCEEEECC------CCCCCCEEEC-------------CCEECCCCEECCCEEEECC
T ss_conf             25753488614642436-7--29988676068------8233212351-------------5463252311165066166


Q ss_pred             EEEECCCEEECCCCCC--CCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHH---HHHHHH
Q ss_conf             0640474350132112--233331000107453233442014442888999999999---999997
Q gi|255764481|r  165 TRIGKYAFIGGMTGVV--HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRA---VYKQIF  225 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~--kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~---ayr~lf  225 (271)
                      ..||+.|+|||.|.|.  -.+||..|+.|+|||+.         |-+|++|+.+-++   -|..|-
T Consensus       105 Avige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~---------R~LseQElaWK~~GT~eYq~La  161 (193)
T TIGR02287       105 AVIGERSIVAASAFVKAGAEIPAQVLVVGSPAKVV---------RELSEQELAWKKRGTREYQDLA  161 (193)
T ss_pred             CEECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEE---------ECCHHHHHHHHHCCCHHHHHHH
T ss_conf             46677412002033434734784612662873055---------3311467887413425689999


No 51 
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.78  E-value=1.4e-19  Score=142.87  Aligned_cols=55  Identities=24%  Similarity=0.358  Sum_probs=51.8

Q ss_pred             CCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             2455321486065234443365064047435013211223333100010745323
Q gi|255764481|r  143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       143 l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      ..+.++|+|++|||++++|+++++||++|+|||+|+|+||+|||+++.|+|||..
T Consensus        53 ~~~~v~Ig~~v~IG~~~~I~~gv~Ig~~svVgagSvV~kdvp~~~i~~G~PAk~I  107 (107)
T cd05825          53 ITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV  107 (107)
T ss_pred             ECCCEEECCCCEECCCCEEECCCEECCCCEEECCCEECCCCCCCCEEEEECCEEC
T ss_conf             6399799388587498789699191899799489889038599979981475899


No 52 
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.77  E-value=1.1e-18  Score=137.25  Aligned_cols=62  Identities=18%  Similarity=0.375  Sum_probs=53.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC-CCCCCCCCCCCH
Q ss_conf             33100123443223452455321486065234443365064047435013-211223333100
Q gi|255764481|r  127 HDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM-TGVVHDVIPYGI  188 (271)
Q Consensus       127 Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g-s~V~kdVpp~~~  188 (271)
                      |+|.||++|.++.++.+...++||++++||+++.|.+...|-+++++++. +.+.|++.+--+
T Consensus        77 ~g~~Ig~~~~IG~~a~I~~G~~IG~~siIgagSvV~~~~~VP~~~l~~GnPAk~ir~l~~~e~  139 (155)
T cd04745          77 HGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEV  139 (155)
T ss_pred             CCCEEEEEEEECCCCEEECCCEECCCCEEEECCEECCCCCCCCCEEEEEECCEEEECCCHHHH
T ss_conf             151774324976875995977989997994187876996837998999728679743999999


No 53 
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of  carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.77  E-value=1.2e-18  Score=137.00  Aligned_cols=160  Identities=18%  Similarity=0.203  Sum_probs=95.9

Q ss_pred             CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC----CEEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf             756551088898599889899565598899899889898668689168----4686553114342232102333122222
Q gi|255764481|r    8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGK----TKIGDFTKVFPMAVLGGDTQSKYHNFVG   83 (271)
Q Consensus         8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~----t~IG~~~~I~~~a~Ig~~~qd~~~~g~~   83 (271)
                      +.|||+|+|+|+|.+            -++|+||+++.|.++++|+++    .+||++|.|..+++|...        ..
T Consensus         3 P~i~~~afIap~A~v------------iGdV~ig~~~sIw~~aviRgD~~~~I~IG~~~nIqD~~viH~~--------~~   62 (167)
T cd00710           3 PVIDPSAYVHPTAVV------------IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHAL--------EG   62 (167)
T ss_pred             CCCCCCEEECCCCEE------------EEEEEECCCCEECCCCEEECCCCCCEEECCCCCCCCCEEEECC--------CC
T ss_conf             706999398999989------------9708999999998887894788887698887434777078225--------76


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC
Q ss_conf             23322222221224432111122222212233200001665543310012344322345245532148606523444336
Q gi|255764481|r   84 TELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ  163 (271)
Q Consensus        84 ~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~  163 (271)
                      ..+.||++++|+.++++|                         ..|.||++|.++.++.+.. ++|||+++||+++.| +
T Consensus        63 ~~~~IG~~vtIgh~a~ih-------------------------G~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V-~  115 (167)
T cd00710          63 YSVWIGKNVSIAHGAIVH-------------------------GPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVV-D  115 (167)
T ss_pred             CCEEECCCCEECCCCEEC-------------------------CEEEECCCCEECCCCEEEC-CEECCCCEECCCCEE-E
T ss_conf             674977982898984881-------------------------2049839988988989982-597699899889888-4


Q ss_pred             CEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
Q ss_conf             50640474350132112233331000107453233442014442888999999999999
Q gi|255764481|r  164 FTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYK  222 (271)
Q Consensus       164 ~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr  222 (271)
                      .++|..+.++.+|+.|++..|+..+-.-.+...        +...-+.+.+.+|.+.||
T Consensus       116 g~~i~~g~~v~~G~~v~~~~pa~~~~~lt~~~~--------~~~~~~~~~y~el~~~y~  166 (167)
T cd00710         116 GVEIPPGRYVPAGAVITSQTQADALPDVTDSAR--------EFNEKVITVNNELAEGYK  166 (167)
T ss_pred             CCCCCCCCEECCCCEEECCCCHHHCCCCCHHHH--------HHHHHHHHHHHHHHHHHC
T ss_conf             778399989558828836996697337999999--------999999999999998743


No 54 
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.76  E-value=3.2e-18  Score=134.47  Aligned_cols=134  Identities=21%  Similarity=0.385  Sum_probs=91.1

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEECCC---CEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             05799756551088898599889899565598899---899889898668689168468655311434223210233312
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSE---VEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYH   79 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~---v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~   79 (271)
                      +|+++++|||+|+|..++.||+++.|+|+|+|..+   ++||++|.|++++.|.                  ...     
T Consensus         2 ~I~~~~~I~p~a~i~G~v~IG~~~~I~~~~~Ir~d~~~i~IG~~~~I~~n~~I~------------------~~~-----   58 (154)
T cd04650           2 RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIH------------------TDH-----   58 (154)
T ss_pred             CCCCCEEECCCCEEECEEEECCCCEECCCCEEECCCCCEEECCCEEECCCCEEE------------------ECC-----
T ss_conf             469987999999997605999999998753895588765999933989998898------------------469-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCC
Q ss_conf             22222332222222122443211112222221223320000166554331001234432234524553214860652344
Q gi|255764481|r   80 NFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGS  159 (271)
Q Consensus        80 ~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~  159 (271)
                         ...+.||+++.|..++.+                          |.|.||++|.++.++.+...++||++++||+++
T Consensus        59 ---~~~~~ig~~v~ig~~~~i--------------------------~g~~Ig~~v~IG~~a~I~~Gv~IG~~svIgaGs  109 (154)
T cd04650          59 ---GYPTEIGDYVTIGHNAVV--------------------------HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGA  109 (154)
T ss_pred             ---CCCCEECCCCEECCCEEE--------------------------ECCEECCEEEECCCEEEECCCEECCCCEECCCC
T ss_conf             ---998687997688995288--------------------------230220135988722996287989997998898


Q ss_pred             CCCCCEEEECCCEEECC-CCCCCCCCCCCH
Q ss_conf             43365064047435013-211223333100
Q gi|255764481|r  160 AVHQFTRIGKYAFIGGM-TGVVHDVIPYGI  188 (271)
Q Consensus       160 ~v~~~v~IG~~a~ig~g-s~V~kdVpp~~~  188 (271)
                      +|-+...+-+++++++. +.+.|++++..+
T Consensus       110 VV~~~~~Vp~~~lv~G~PAr~ir~l~~~~~  139 (154)
T cd04650         110 VVTPGKEIPDYSLVLGVPAKVVRKLTEEEI  139 (154)
T ss_pred             EECCCCEECCCCEEEECCEEEEEECCHHHH
T ss_conf             887997919984999618189772999999


No 55 
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.75  E-value=5.9e-19  Score=139.04  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=52.8

Q ss_pred             CCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             52455321486065234443365064047435013211223333100010745323
Q gi|255764481|r  142 MIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       142 ~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      ..+..++|||++|||++++|.++++||++|.|||||+|+|||||+++++|+|||+.
T Consensus       125 ~~~~pi~Ig~~vwig~~~~i~pGv~IG~~~vigagsvV~~dip~~~v~~G~Par~i  180 (183)
T PRK10092        125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARII  180 (183)
T ss_pred             EECCCEEECCCCEECCCCEEECCCEECCCCEECCCCEEEEECCCCCEEEEECCEEE
T ss_conf             31687798998688899899079899999899759889227799929997475788


No 56 
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.72  E-value=2.3e-17  Score=129.09  Aligned_cols=152  Identities=22%  Similarity=0.351  Sum_probs=113.8

Q ss_pred             CEECCC-EEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             756551-0888985998898995655988998998898986686891684686553114342232102333122222233
Q gi|255764481|r    8 PIIHPL-ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTEL   86 (271)
Q Consensus         8 ~~Ihps-A~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v   86 (271)
                      .+|+|. -+|+++++||.+|.|.|++++.++++||++|+|+|+++|. ++.||+++.|.+|++|.+             .
T Consensus       256 tl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~-------------s  321 (460)
T COG1207         256 TLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEG-------------S  321 (460)
T ss_pred             EEECCCEEEECCCEEECCCEEEECCCEEEEEEEECCCEEECCCCEEE-EEEECCCCEEEECCEEEC-------------C
T ss_conf             99678848873717987814991484894158967964999996787-538769988975104305-------------5


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC---
Q ss_conf             22222221224432111122222212233200001665543310012344322345245532148606523444336---
Q gi|255764481|r   87 LVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ---  163 (271)
Q Consensus        87 ~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~---  163 (271)
                      .||+++.++.|+.+-+++..+ ..++||+-      +-+ .+..||++.-..+-+. -|.++||.++.||+++..-.   
T Consensus       322 ~vg~~~~VGPfA~LRPg~~L~-~~~hIGNF------VEv-K~a~ig~gsKa~HLtY-lGDA~iG~~~NiGAGtItcNYDG  392 (460)
T COG1207         322 TVGEGATVGPFARLRPGAVLG-ADVHIGNF------VEV-KKATIGKGSKAGHLTY-LGDAEIGENVNIGAGTITCNYDG  392 (460)
T ss_pred             EECCCCCCCCCCCCCCCCCCC-CCCEEEEE------EEE-ECCCCCCCCCCCCEEE-ECCCEECCCCEECCCEEEECCCC
T ss_conf             854796337831017968526-79767425------998-4356068863353234-21332068742144259984788


Q ss_pred             ----CEEEECCCEEECCCCCCCC
Q ss_conf             ----5064047435013211223
Q gi|255764481|r  164 ----FTRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       164 ----~v~IG~~a~ig~gs~V~kd  182 (271)
                          .+.||+++|||.+|...-.
T Consensus       393 ~nK~~T~IGd~vFiGSns~LVAP  415 (460)
T COG1207         393 KNKFKTIIGDNVFIGSNSQLVAP  415 (460)
T ss_pred             CCCCEEEECCCCEECCCCCEEEE
T ss_conf             63320064688577668718864


No 57 
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.72  E-value=3.6e-18  Score=134.12  Aligned_cols=49  Identities=31%  Similarity=0.422  Sum_probs=47.2

Q ss_pred             CCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCC
Q ss_conf             5532148606523444336506404743501321122333310001074
Q gi|255764481|r  145 GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP  193 (271)
Q Consensus       145 G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~p  193 (271)
                      +++.|+|++|||.++.+.++++||++|+|||+|+|+||+|+++++.|+|
T Consensus        53 ~~~~Ig~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dv~~~si~~G~P  101 (101)
T cd03354          53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP  101 (101)
T ss_pred             CCCCCCCCEEECCCCEEECCCEECCCCEECCCCEECCCCCCCCEEEECC
T ss_conf             7761487586358988929879999879987988996859998998039


No 58 
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.70  E-value=3.7e-17  Score=127.77  Aligned_cols=166  Identities=15%  Similarity=0.279  Sum_probs=124.6

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      -+|+.+++|+|+|.|-.++.||++++|||+|+|..++               +..+||++|.|..+|+|...+       
T Consensus        11 P~i~~~afIap~A~viGdV~ig~~~sIw~~aVlRGD~---------------~~I~IG~~tNIQD~~viH~~~-------   68 (196)
T PRK13627         11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY---------------GRLIVQAGANLQDGCIMHGYC-------   68 (196)
T ss_pred             CCCCCCEEECCCCEEEEEEEECCCCEECCCEEEECCC---------------CCEEECCCCEECCCCEEECCC-------
T ss_conf             7229983889999899849999998897770895688---------------717989986767983781489-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf             22233222222212244321111222222122332000016655433100123443223452455321486065234443
Q gi|255764481|r   82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV  161 (271)
Q Consensus        82 ~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v  161 (271)
                       ...+.||++++|+.++.+                          |+|.||++|.++.++.+...++||++++||+++.|
T Consensus        69 -~~~~~IG~~vtIGH~ail--------------------------hgc~Igd~~lIGmgavVldga~Ig~~~iI~AgslV  121 (196)
T PRK13627         69 -DTDTIVGENGHIGHGAIL--------------------------HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFV  121 (196)
T ss_pred             -CCCCEECCCEEECCCEEE--------------------------EEEEEECCCEECCCCEEECCCEECCCCEECCCCEE
T ss_conf             -998588898058787299--------------------------63499489788469799288899999899768645


Q ss_pred             CCCEEEECCCEEECC-CCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             365064047435013-21122333310001074532334420144428889999999999999972799899
Q gi|255764481|r  162 HQFTRIGKYAFIGGM-TGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIY  232 (271)
Q Consensus       162 ~~~v~IG~~a~ig~g-s~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~  232 (271)
                      .++.+|-.+.++.+. +.+.+++-+-.+                ++...+.+.+.+|.+.|+.-.+.-.+|.
T Consensus       122 ~~g~~ip~~~L~~G~PAk~vR~lt~~ei----------------~~~~~~a~~Y~~la~r~~~~l~~~~Pl~  177 (196)
T PRK13627        122 KAGFQGEKRQLLMGTPARAVRSVSDQEL----------------HWKRLNTKEYQDLAGRCHASLHETQPLT  177 (196)
T ss_pred             CCCCCCCCCCEEEECCEEEEECCCHHHH----------------HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             7994938981998778168114999999----------------9988769999999999985485468864


No 59 
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.70  E-value=4.3e-17  Score=127.35  Aligned_cols=120  Identities=29%  Similarity=0.421  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEECCCEEECCCCCCCC
Q ss_conf             33222222212244321111222222122332000016655433100123443223-45245532148606523444336
Q gi|255764481|r   85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNN-VMIAGHVIVDDRVVFGGGSAVHQ  163 (271)
Q Consensus        85 ~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~-~~l~G~v~Igd~~~IG~~~~v~~  163 (271)
                      .+.+|+++.+..++.+-.     .....||++++++.++++-.....++....... ....+.++||++||||+++.|.+
T Consensus        67 ~~~iG~~~~i~~~~~~~~-----~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp  141 (190)
T COG0110          67 NLTIGDLCFIGVNVVILV-----GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP  141 (190)
T ss_pred             CEEECCEEEEECCCEEEE-----CCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCCEECC
T ss_conf             106463467702544983-----488588998589599498268765652200014323578978899858778978979


Q ss_pred             CEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHH
Q ss_conf             506404743501321122333310001074532334420144428889999999
Q gi|255764481|r  164 FTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLI  217 (271)
Q Consensus       164 ~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l  217 (271)
                      +++||++|+||++|+|+||+|||+++.|+|||+.        |..+..+.+..+
T Consensus       142 GV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vi--------r~~~~~~~~~~~  187 (190)
T COG0110         142 GVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVI--------RKRDVVAKIGVL  187 (190)
T ss_pred             CEEECCCEEEECCEEEECCCCCCEEEECCCCEEE--------EECCHHHHHHHH
T ss_conf             8598998199788589577799828979998898--------741605555653


No 60 
>KOG4750 consensus
Probab=99.68  E-value=2e-17  Score=129.40  Aligned_cols=106  Identities=24%  Similarity=0.381  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHCC--CCCCCCCCCCCCCCCCCCCCCCC--------CCCEECCCE
Q ss_conf             3222222212244--32111122222212233200001--66554331001234432234524--------553214860
Q gi|255764481|r   86 LLVGKKCVIREGV--TINRGTVEYGGKTIVGDNNFFLA--NSHVAHDCKLGNGIVLSNNVMIA--------GHVIVDDRV  153 (271)
Q Consensus        86 v~IG~~~~Ire~v--~I~~gt~~~~~~T~IG~~~~i~~--~~hI~Hd~~IG~~vii~n~~~l~--------G~v~Igd~~  153 (271)
                      +.++.++.+.+..  -||++.       +||+.-++..  ++-|+.-.+||++|.+..++.|+        .|-+|+|+|
T Consensus       135 lal~~q~ris~~~gvdihpaa-------~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~v  207 (269)
T KOG4750         135 LALGLQVRISPNFGVDIHPAA-------KIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNV  207 (269)
T ss_pred             EEEEECCEECCCCCCCCCCHH-------HCCCCEEECCCCCEEECCEEEECCCEEEECCEEECCCCCCCCCCCCCCCCCE
T ss_conf             887641233242021246201-------0265312213332353102474264466444311465466555688556770


Q ss_pred             EECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             652344433650640474350132112233331000107453233
Q gi|255764481|r  154 VFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRG  198 (271)
Q Consensus       154 ~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~  198 (271)
                      |||++++|..+++||++|+|||||+|+|||||..++.|||||+.+
T Consensus       208 liGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnPAklIg  252 (269)
T KOG4750         208 LIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIG  252 (269)
T ss_pred             EECCCCEEECCEEECCCCEEECCCEEEECCCCCCEECCCCHHHCC
T ss_conf             875541785781677886773050697216987530488233234


No 61 
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67  E-value=3e-16  Score=122.11  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             CCEECCCCEECCCCEECCC---CEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899889898668689168---4686553114342232102333122222233222222212244321111222222122
Q gi|255764481|r   37 EVEIGAGVELISHCVVAGK---TKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV  113 (271)
Q Consensus        37 ~v~IG~~~~I~~~v~I~g~---t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~I  113 (271)
                      |+.||++|.|.++++|+++   .+||++|.|.++++|........+....                         .++.|
T Consensus        21 nI~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~~~~~~-------------------------~p~~I   75 (161)
T cd03359          21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAF-------------------------FPLHI   75 (161)
T ss_pred             CEEECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCCCCCCC-------------------------CCCEE
T ss_conf             75999987899996896788654999985888998992464435778888-------------------------77284


Q ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC-CCCCCCCCCCC
Q ss_conf             332000016655433100123443223452455321486065234443365064047435013-21122333310
Q gi|255764481|r  114 GDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM-TGVVHDVIPYG  187 (271)
Q Consensus       114 G~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g-s~V~kdVpp~~  187 (271)
                      |++++++.++.+ |.|.||++|.++.++.++..+.|+|+++|+.++.|.+..+|-.++++++. +.+.+++|+-.
T Consensus        76 Gd~v~Ig~~~~i-~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~I~~gsvV~~~~~ip~~~~~~G~Pak~i~~l~e~~  149 (161)
T cd03359          76 GDYVFIGENCVV-NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECT  149 (161)
T ss_pred             CCCEEECCCEEE-ECCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEECCEEEEEECCHHH
T ss_conf             898798998288-48896677155798199499799999899889898899898998199851808957699999


No 62 
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.63  E-value=5.3e-16  Score=120.56  Aligned_cols=54  Identities=26%  Similarity=0.393  Sum_probs=50.6

Q ss_pred             CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             532148606523444336506404743501321122333310001074532334
Q gi|255764481|r  146 HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGV  199 (271)
Q Consensus       146 ~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~  199 (271)
                      |-+|+|+|.||+++.|..+++||++|.|||||+|++||||++++.|+|||+.|-
T Consensus       193 HP~i~~~v~igaga~iLG~i~iG~~a~igA~svVl~dvp~~~tv~GvPa~~vg~  246 (273)
T PRK11132        193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGK  246 (273)
T ss_pred             CCCCCCCEEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEECCCCEEECC
T ss_conf             980488848754888971858899988867866864379998796667203088


No 63 
>TIGR01172 cysE serine O-acetyltransferase; InterPro: IPR005881    The biosynthesis of L-cysteine is the predominant way by which inorganic sulphur is incorporated into organic compounds. In this process, the most abundant utilizable source of sulphur, inorganic sulphate, is taken up and reduced to sulphide. Sulphide is used to produce L-cysteine, which serves for protein synthesis or the production of other sulphur-containing organic compounds. Two routes for cysteine biosynthesis in nature have been documented. Serine transacetylase (2.3.1.30 from EC) catalyzes steps in pathway I, the activation of L-serine by acetyl-coenzyme A, yielding O-acetyl-L-serine.; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm.
Probab=99.62  E-value=3.7e-16  Score=121.56  Aligned_cols=50  Identities=30%  Similarity=0.419  Sum_probs=48.0

Q ss_pred             CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf             53214860652344433650640474350132112233331000107453
Q gi|255764481|r  146 HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGA  195 (271)
Q Consensus       146 ~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~  195 (271)
                      |-+|+|+|.||+++-|+.+.+||++|-|||+|+|++||||+.+|.|.|||
T Consensus       114 HPt~~~gV~iGAGAKvLG~I~vG~~AkiGAnsVVl~dVP~~~TVVGvPar  163 (163)
T TIGR01172       114 HPTIGEGVVIGAGAKVLGNIEVGENAKIGANSVVLKDVPAGATVVGVPAR  163 (163)
T ss_pred             CCCCCCCEEEEECCEEECCEEECCCCEECCCEEECCCCCCCCEEEEECCC
T ss_conf             88256871784078240376677997772332673537898658743589


No 64 
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.61  E-value=1.2e-15  Score=118.27  Aligned_cols=53  Identities=30%  Similarity=0.454  Sum_probs=49.5

Q ss_pred             CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             53214860652344433650640474350132112233331000107453233
Q gi|255764481|r  146 HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRG  198 (271)
Q Consensus       146 ~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~  198 (271)
                      |.+|+|+|.||+++-|...++||+++.|||+|+|.|||||++++.|.|||+..
T Consensus       119 hPtIg~~V~IGagAkILG~I~IGd~a~IGA~sVVlkdVP~~~tvvGvPArii~  171 (194)
T COG1045         119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG  171 (194)
T ss_pred             CCCCCCCEEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEECCCCEEEC
T ss_conf             98317885989998897166887897888786681578999668667646853


No 65 
>PRK10191 putative colanic acid biosynthesis acetyltransferase WcaB; Provisional
Probab=99.57  E-value=1.5e-15  Score=117.64  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             CCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             55321486065234443365064047435013211223333100010745323
Q gi|255764481|r  145 GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR  197 (271)
Q Consensus       145 G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~  197 (271)
                      ++-+|||+++||+++.+...++||++++|||+|+|++||||++++.|+|||++
T Consensus        91 ~~P~Ig~~V~Igaga~IlG~i~IG~~~~IGA~svV~~dvp~~~~v~G~Pari~  143 (146)
T PRK10191         91 ACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVK  143 (146)
T ss_pred             CCCEECCCEEEECCCEEECCCEECCCCEECCCCEECCCCCCCCEEEEECCEEE
T ss_conf             98987999599289999648599999999989589703599999997680999


No 66 
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.56  E-value=9.8e-15  Score=112.62  Aligned_cols=133  Identities=20%  Similarity=0.360  Sum_probs=103.2

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      -+|+.+++|||+|.|=.+++||+++.|||+++|..++               +..+||+++.|..+++|-.++.      
T Consensus        12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~---------------~~I~IG~~tNIQDg~ViH~~~~------   70 (176)
T COG0663          12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV---------------EPIRIGARTNIQDGVVIHADPG------   70 (176)
T ss_pred             CCCCCCEEECCCCEEEEEEEECCCCEECCCEEEECCC---------------CCEEECCCCEECCCEEEECCCC------
T ss_conf             8789862877999799859999997887763897467---------------7569878856037838952799------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf             22233222222212244321111222222122332000016655433100123443223452455321486065234443
Q gi|255764481|r   82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV  161 (271)
Q Consensus        82 ~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v  161 (271)
                        ..+.||++++|+..+.+                          |.|.||++|.++.++.+.-.++||++++||+++.|
T Consensus        71 --~p~~IG~~vtIGH~aiv--------------------------HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV  122 (176)
T COG0663          71 --YPVTIGDDVTIGHGAVV--------------------------HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALV  122 (176)
T ss_pred             --CCEEECCCCEECCCCEE--------------------------EEEEECCCCEEECCCEEECCCEECCCCEECCCCCC
T ss_conf             --99297799588576589--------------------------88598788589138667578698898698668700


Q ss_pred             CCCEEEECCCEEEC-CCCCCCCC
Q ss_conf             36506404743501-32112233
Q gi|255764481|r  162 HQFTRIGKYAFIGG-MTGVVHDV  183 (271)
Q Consensus       162 ~~~v~IG~~a~ig~-gs~V~kdV  183 (271)
                      .+.-++..+.++-+ -+.+.+.+
T Consensus       123 ~~~k~~p~~~L~~G~Pak~~r~l  145 (176)
T COG0663         123 TPGKEIPGGSLVVGSPAKVVRPL  145 (176)
T ss_pred             CCCCCCCCCEEEECCCCEEEECC
T ss_conf             58837799759623740144028


No 67 
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.42  E-value=5.2e-13  Score=101.82  Aligned_cols=119  Identities=23%  Similarity=0.263  Sum_probs=86.0

Q ss_pred             CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             75655108889859988989956559889989988989866868916846865531143422321023331222222332
Q gi|255764481|r    8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELL   87 (271)
Q Consensus         8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~   87 (271)
                      ..|-|+|+|-.+|.|++|+++.|-++|.=++.++++|.|.-++++.+.+.||+||.|+-+|+|++-            ++
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GV------------Le  176 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGV------------LE  176 (271)
T ss_pred             EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCCCEEEEE------------EC
T ss_conf             363676477605287799387555668777602752589615655131797998452786367677------------34


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEE
Q ss_conf             22222212244321111222222122332000016655433100123443223452455321486065234443365064
Q gi|255764481|r   88 VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRI  167 (271)
Q Consensus        88 IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~I  167 (271)
                                    ++   ...+                                    +.|||+|+||+++.+.-++.+
T Consensus       177 --------------p~---~a~P------------------------------------v~IgdncliGAns~~veGV~v  203 (271)
T COG2171         177 --------------PL---QANP------------------------------------VIIGDNCLIGANSEVVEGVIV  203 (271)
T ss_pred             --------------CC---CCCC------------------------------------EEECCCCEECCCCCEEEEEEE
T ss_conf             --------------88---8788------------------------------------698776186245334861696


Q ss_pred             ECCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             047435013211223333100010
Q gi|255764481|r  168 GKYAFIGGMTGVVHDVIPYGILNG  191 (271)
Q Consensus       168 G~~a~ig~gs~V~kdVpp~~~~~G  191 (271)
                      |++|.|+||..|++|+|++..+.|
T Consensus       204 Gdg~VV~aGv~I~~~tki~~~~~g  227 (271)
T COG2171         204 GDGCVVAAGVFITQDTKIYDRVAG  227 (271)
T ss_pred             CCCCEEECCEEEECCCCEEEEECC
T ss_conf             789688545089379514774346


No 68 
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.42  E-value=5.1e-13  Score=101.88  Aligned_cols=82  Identities=30%  Similarity=0.528  Sum_probs=68.0

Q ss_pred             CCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             97565510888985998898995655988998998898986686891684686553114342232102333122222233
Q gi|255764481|r    7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTEL   86 (271)
Q Consensus         7 ~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v   86 (271)
                      -..|||+|+|+++++||+++.|+|+|+|.++++||++|.|.+++.|.-+++||++|.+.|++.+++            .+
T Consensus        87 ~~lIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~I~Hd~~ig~~~~i~~~~~i~G------------~v  154 (201)
T TIGR03570        87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG------------GV  154 (201)
T ss_pred             EEEECCCCEECCCCEECCCCEEECCCEECCCCEEEEEEEECCCCCCCCCCEECCCCEECCCCEECC------------CC
T ss_conf             899999809889867879989962869876647802679804232144254778768999859989------------88


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             22222221224432
Q gi|255764481|r   87 LVGKKCVIREGVTI  100 (271)
Q Consensus        87 ~IG~~~~Ire~v~I  100 (271)
                      .||+++.|+.+++|
T Consensus       155 ~Ig~~~~iG~~~~i  168 (201)
T TIGR03570       155 VIGEGVFIGAGATI  168 (201)
T ss_pred             EECCCCEECCCCEE
T ss_conf             79777359898898


No 69 
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.41  E-value=4e-13  Score=102.57  Aligned_cols=77  Identities=26%  Similarity=0.478  Sum_probs=40.1

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8898599889899565598899899889898668689168468655311434223210233312222223322222221
Q gi|255764481|r   16 VEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVI   94 (271)
Q Consensus        16 I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~I   94 (271)
                      |||+|+|+++|+|||+++|+++|+||++|+|. +++|..+++|++++.+. +++||..++..+|......+.|||++.|
T Consensus         2 Idpsa~Ig~~~~IGp~vvIG~nv~IG~gv~I~-~~vI~~~~~I~~~s~i~-~siIG~~~~iG~~~ri~~~~viGd~v~I   78 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVK-SSIVGWNSTVGRWTRLENVTVLGDDVTI   78 (80)
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEEE-EEEEECCCEECCCCEEE-CCEECCCCCCCCCEEECCCCEECCCCEE
T ss_conf             37878989999999985899999999997997-30895789998986997-8998579704894036586298898698


No 70 
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.36  E-value=1e-12  Score=100.05  Aligned_cols=103  Identities=31%  Similarity=0.501  Sum_probs=79.1

Q ss_pred             CCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             97565510888985998898995655988998998898986686891684686553114342232102333122222233
Q gi|255764481|r    7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTEL   86 (271)
Q Consensus         7 ~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v   86 (271)
                      -..|||+|+|++.++||+++.|+|+|+|+++++||++|.|.+++.|.-++.||++|.+.|+++|++            .+
T Consensus        84 ~niIhp~a~i~~~~~ig~G~~I~~~~~i~~~~~IG~~~~i~~~~~i~Hd~~ig~~~~i~~~~~i~g------------~v  151 (197)
T cd03360          84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSG------------GV  151 (197)
T ss_pred             EEEECCCCEECCCCEECCCCEEECCCEECCCCCCCCEEEECCCHHCCCCCCCCCCCEECCCEEECC------------CE
T ss_conf             899999959877747999429931759865653043689877001053150131010667236778------------30


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             222222212244321111222222122332000016655433
Q gi|255764481|r   87 LVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD  128 (271)
Q Consensus        87 ~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd  128 (271)
                      .||+++.|+.+++|..+       ..||+++.+++++.|-+|
T Consensus       152 ~Ig~~~~iG~~~~i~~~-------i~Ig~~~~igags~v~~~  186 (197)
T cd03360         152 TIGEGAFIGAGATIIQG-------VTIGAGAIIGAGAVVTKD  186 (197)
T ss_pred             EEEEECCCCCCCEECCC-------CEECCCCEECCCCEEEEE
T ss_conf             89121629899898799-------899999999979989125


No 71 
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.32  E-value=3.8e-12  Score=96.41  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.0

Q ss_pred             CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCC
Q ss_conf             53214860652344433650640474350132112
Q gi|255764481|r  146 HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV  180 (271)
Q Consensus       146 ~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~  180 (271)
                      +++|||++|||+++.++++++||++|+|||+|+||
T Consensus        44 ~~~Ig~~v~Ig~~a~I~~gv~IGdn~~IgagavVt   78 (78)
T cd00208          44 PTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             CCEECCCEEECCCCEEECCEEECCCCEECCCCEEC
T ss_conf             98999996998689897981999999999885699


No 72 
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.27  E-value=1e-11  Score=93.78  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             ECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEE
Q ss_conf             655108889859988989956559889989988989866868916846865531143422321
Q gi|255764481|r   10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGG   72 (271)
Q Consensus        10 IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~   72 (271)
                      +-|.|++-.+|.|+++|.+.| ++|.=++.+|++|.|..++++...+.||+||++..++.||+
T Consensus        99 vVP~a~vR~Gayi~~~vVlMP-s~VNiGAyv~~gtmiDtwatvGScAqiGknvhls~g~gigG  160 (265)
T PRK11830         99 VVPGAVVRRGAYIAKNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG  160 (265)
T ss_pred             ECCCCEEEECEEECCCCEEEE-EEEEEEEEECCCCEEECCCCEECHHEECCCEEECCCCEEEE
T ss_conf             878853760305459958864-17776039848954804762411532378336878741426


No 73 
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.27  E-value=1.9e-11  Score=92.02  Aligned_cols=40  Identities=28%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf             3214860652344433650640474350132112233331000
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL  189 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~  189 (271)
                      ++||++++||+++.|-+.+.+  |. +-++.....++|||+++
T Consensus        94 v~IG~~avIGAGsVVtkdvp~--y~-~~~g~~~~~~~p~~~~~  133 (139)
T cd03350          94 VIVGKGAVLAAGVVLTQSTPI--YD-RETGEIYYGRVPPGSVV  133 (139)
T ss_pred             CEECCCCEECCCCEEECCCCC--EE-EECCCEEECCCCCCCEE
T ss_conf             799999899979889189884--68-23780970116998787


No 74 
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.24  E-value=1.8e-11  Score=92.22  Aligned_cols=54  Identities=24%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Q ss_conf             579975655108889859988989956559889989988989866868916846
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTK   57 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~   57 (271)
                      |++++.|+|.++|+++++||+++.|+++|+|..+++||++|.|++++.+..+..
T Consensus         1 IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~~~~~~~   54 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY   54 (119)
T ss_pred             CCCCCEECCCCEECCCCEECCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf             989989999989999999999969999863678999843779778863304446


No 75 
>KOG1461 consensus
Probab=99.22  E-value=1e-11  Score=93.74  Aligned_cols=100  Identities=20%  Similarity=0.321  Sum_probs=57.2

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98898995655988998998898986686891684686553114342232102333122222233222222212244321
Q gi|255764481|r   22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTIN  101 (271)
Q Consensus        22 Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~  101 (271)
                      -++++++.+-|.++.++.||.+|.|++++.|. |+.||.||.|+.+++|-+             ..|+++|+|+++|.|+
T Consensus       318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~-------------S~iw~~v~Igdnc~I~  383 (673)
T KOG1461         318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKN-------------SFIWNNVTIGDNCRID  383 (673)
T ss_pred             CCCCCEEHHHCCCCCEEEECCCCCCCCCCEEE-CCEECCCCEECCCEEEEE-------------EEEECCCEECCCCEEE
T ss_conf             47401000120124407951454126798555-226658977457458851-------------3662583887886573


Q ss_pred             CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             111222222122332000016655433100123443223452
Q gi|255764481|r  102 RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMI  143 (271)
Q Consensus       102 ~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l  143 (271)
                      +.        .|++++.+.+++++-+.|++|.+|+++.+-.+
T Consensus       384 ~a--------ii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l  417 (673)
T KOG1461         384 HA--------IICDDVKIGEGAILKPGSVLGFGVVVGRNFVL  417 (673)
T ss_pred             EE--------EEECCCEECCCCCCCCCCEEEEEEEECCCCCC
T ss_conf             46--------86058376788440788577521686798312


No 76 
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.18  E-value=7e-11  Score=88.54  Aligned_cols=34  Identities=38%  Similarity=0.598  Sum_probs=14.5

Q ss_pred             EECCCCEECCCCEECCCCEEEEEEECCCCCEEEE
Q ss_conf             9988989866868916846865531143422321
Q gi|255764481|r   39 EIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGG   72 (271)
Q Consensus        39 ~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~   72 (271)
                      .||++|+|+++++|.+++.||++|.|+|+++|+.
T Consensus         2 ~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~   35 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA   35 (78)
T ss_pred             EECCCCEECCCCEECCCEEECCCCEECCCCEEEE
T ss_conf             9999849999849988269999998999989963


No 77 
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.13  E-value=2.8e-10  Score=84.80  Aligned_cols=181  Identities=12%  Similarity=0.145  Sum_probs=90.4

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf             50579975655108889859988989956559889989988989866868916846865531143422321023331222
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNF   81 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g   81 (271)
                      +++|+++.|-+.+.+. ++.||+...|+++|.|. +++||..|.|.++|.|.+...--+....+++...+..        
T Consensus        20 ~~lG~~v~Ig~~~~i~-ns~IGDySyI~~~~~I~-n~~IGkfcsIa~~v~I~~~nHp~~~~s~~~f~y~~~~--------   89 (204)
T TIGR03308        20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAM--------   89 (204)
T ss_pred             CCCCCCEEECCCCEEE-CCEECCCCEECCCCEEE-CCEECCCCEECCCCEECCCCCCCCCCEECCEEEECCC--------
T ss_conf             7837833999995883-37999985888997598-8869998488898798987787667267777553753--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC
Q ss_conf             22233222222212244321111222222122332000016655433100123443223452455321486065234443
Q gi|255764481|r   82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV  161 (271)
Q Consensus        82 ~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v  161 (271)
                        -.-..++...+.++                          .-.|.+.||++|.++.++.+...++||++++||++++|
T Consensus        90 --~~~~~~~~~~~~~~--------------------------~~~~~~~Ig~dvwiG~~~~i~~gv~IG~gavigagsvV  141 (204)
T TIGR03308        90 --YFDDASDDADFFAW--------------------------RRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVV  141 (204)
T ss_pred             --CCCCCCCCHHHHCC--------------------------CCCCCEEECCCCEECCCCEECCCCEECCCCEECCCCEE
T ss_conf             --34666661223213--------------------------34787098997688799899199799999899779989


Q ss_pred             CCCEEEECCCEEECC-CCCCCC-CCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             365064047435013-211223-3331000107453233442014442888999999999999997279989999999
Q gi|255764481|r  162 HQFTRIGKYAFIGGM-TGVVHD-VIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGA  237 (271)
Q Consensus       162 ~~~v~IG~~a~ig~g-s~V~kd-Vpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~  237 (271)
                      -.  .|..|++++|. |.+.|. -++- +..    +     +.-+++=..+.|+|++--..    ||+ ++.+.-+++
T Consensus       142 tk--dv~~~~iv~G~PAk~ir~RF~~~-~i~----~-----L~~~~WWdw~~e~i~~~l~~----f~~-~~~~~f~~~  202 (204)
T TIGR03308       142 TK--DVAPYTIVAGVPAKLIRRRFPPE-IAA----R-----IEALAWWDWDHETLREALPD----FRD-LPAEAFLDK  202 (204)
T ss_pred             CC--CCCCCEEEEECCCEEEECCCCHH-HHH----H-----HHHCCCCCCCHHHHHHHHHH----HHC-CCHHHHHHH
T ss_conf             95--17998499841885663109999-999----9-----98773648999999998998----872-899999874


No 78 
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.11  E-value=2.8e-10  Score=84.75  Aligned_cols=72  Identities=22%  Similarity=0.449  Sum_probs=45.0

Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC--------CEEEECCCEEECCCCCCCCC
Q ss_conf             2233200001665543310012344322345245532148606523444336--------50640474350132112233
Q gi|255764481|r  112 IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ--------FTRIGKYAFIGGMTGVVHDV  183 (271)
Q Consensus       112 ~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~--------~v~IG~~a~ig~gs~V~kdV  183 (271)
                      .||++..+|.++.|..++.||+++++..++.+++.++||++|.||+++++..        +|.||++++||++|+|...|
T Consensus       100 ~IG~~aVImmga~INiGA~IGegtmId~~Avvg~~a~IGk~~HisaGa~laGVleP~~a~PViIeDnV~IGAnAvIl~GV  179 (231)
T TIGR03532       100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGV  179 (231)
T ss_pred             EECCCEEEECCCEEECCCEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCCCCCCCCEEECCCEEECCCCEECCCC
T ss_conf             98798399138887048598789458058564454688797058898643002257667997987885987997991998


No 79 
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.11  E-value=3.2e-10  Score=84.42  Aligned_cols=133  Identities=16%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             CCEECCCCEECCCCEEC----CCCEECCCCEECCCCEEC--CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             85998898995655988----998998898986686891--684686553114342232102333122222233222222
Q gi|255764481|r   19 GAVIGPNSLIGPFCCVG----SEVEIGAGVELISHCVVA--GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKC   92 (271)
Q Consensus        19 ~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~v~I~--g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~   92 (271)
                      .-++|+++.+|+.|.++    +...||+||.|++++.|.  +..+||+||.|.+++.|.+..    |..........+..
T Consensus        43 ~I~~g~~~~~g~~~rl~~~~~gkl~IGdNv~Ig~~~~I~~~~~I~IG~nVlIa~~V~I~d~n----H~~~~~~~~~~~~~  118 (192)
T PRK09677         43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHN----HGSFKHSDDFSSPN  118 (192)
T ss_pred             CEEECCCEEECCCEEEEEECCCEEEECCCCEECCCCEEEECCCEEECCCCEECCCEEEECCC----CCCCCCCCCCCCCC
T ss_conf             56878961966877999706750899998489998589867767989986887988996788----87655545434567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCE
Q ss_conf             21224432111122222212233200001665543310012344322345245532148606523444336506404743
Q gi|255764481|r   93 VIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAF  172 (271)
Q Consensus        93 ~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~  172 (271)
                      ..    ...++.  ...+                  +.|||+|.++.++.+...++||+++++|++++|..  .+-++++
T Consensus       119 ~~----~~~~~~--~~~p------------------v~Ig~~~wIg~~~~Il~Gv~Ig~~~vvgA~SvV~~--dvp~~~i  172 (192)
T PRK09677        119 LP----PDMRTL--ESSA------------------VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK--SIPENTV  172 (192)
T ss_pred             CC----CCCCCC--CCCC------------------EEECCCCEECCCCEEECCCEECCCCEECCCCEECC--CCCCCEE
T ss_conf             68----212667--7599------------------89899989999999919969999989916999985--8599919


Q ss_pred             EECC-CCCCC
Q ss_conf             5013-21122
Q gi|255764481|r  173 IGGM-TGVVH  181 (271)
Q Consensus       173 ig~g-s~V~k  181 (271)
                      +++. |.+.|
T Consensus       173 ~~G~PAk~Ik  182 (192)
T PRK09677        173 IAGNPAKIIK  182 (192)
T ss_pred             EEEECCEEEE
T ss_conf             9970838897


No 80 
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08  E-value=3.5e-10  Score=84.20  Aligned_cols=54  Identities=30%  Similarity=0.466  Sum_probs=44.8

Q ss_pred             CCEEE---CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECC
Q ss_conf             51088---8985998898995655988998998898986686891684686553114
Q gi|255764481|r   12 PLALV---EEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVF   65 (271)
Q Consensus        12 psA~I---~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~   65 (271)
                      |.+++   +..+.|+++++|.|||+|+..+.||++|.|+|++.|++++.||++|+|+
T Consensus         1 p~~~~d~~~GpV~I~~~~~I~~~~~i~Gp~~IG~~~~I~p~a~Ir~~t~Ig~~~~IG   57 (101)
T cd05635           1 PGAVLDAEDGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIG   57 (101)
T ss_pred             CCCEEECCCCCEEECCCCEECCCCEEECCEEECCCCEECCCCEEECCCEECCCCEEC
T ss_conf             971787898999987999999999997666999999999997863887999997761


No 81 
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07  E-value=3.9e-10  Score=83.83  Aligned_cols=48  Identities=23%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             9889899565598899899889898668689168468655311434223
Q gi|255764481|r   22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus        22 Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      |++.++||+.|.|+++|.||+||+|+++|.|. ++.|.+++.|.+++.|
T Consensus         2 Idpsa~Ig~~~~IGp~vvIG~nv~IG~gv~I~-~~vI~~~~~I~~~s~i   49 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWV   49 (80)
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEEE-EEEEECCCEECCCCEE
T ss_conf             37878989999999985899999999997997-3089578999898699


No 82 
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.05  E-value=2.1e-10  Score=85.55  Aligned_cols=81  Identities=23%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC--
Q ss_conf             2233200001665543310012344322345245--------532148606523444336506404743501321122--
Q gi|255764481|r  112 IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG--------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH--  181 (271)
Q Consensus       112 ~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G--------~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k--  181 (271)
                      .||+.+++...++||--++||.||.|+.++.++|        .+.|+|+|+||+++.|..++.|+++|.+++|..+++  
T Consensus       127 yv~~gtmiDtwatvGScAqiGknvhls~g~gigGvleP~~a~p~iied~~fiGa~~~v~eGv~v~~~avl~~gv~l~~st  206 (265)
T PRK11830        127 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGAVIGMGVFLGQST  206 (265)
T ss_pred             EECCCCEEECCCCEECHHEECCCEEECCCCEEEEEECCCCCCCEEEECCCEECCCCEEEEEEEEECCCEECCEEEECCCC
T ss_conf             98489548047624115323783368787414265247667987983682873574796139994586972104760671


Q ss_pred             -------------CCCCCCHH-HHC
Q ss_conf             -------------33331000-107
Q gi|255764481|r  182 -------------DVIPYGIL-NGN  192 (271)
Q Consensus       182 -------------dVpp~~~~-~G~  192 (271)
                                   +||||+++ .|+
T Consensus       207 ~I~D~~~~ev~~g~vP~~svvv~Gs  231 (265)
T PRK11830        207 KIYDRETGEVHYGRVPAGSVVVPGS  231 (265)
T ss_pred             EEEECCCCCEEECCCCCCCEEECCC
T ss_conf             6787247828743479998895574


No 83 
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.05  E-value=6.9e-10  Score=82.31  Aligned_cols=57  Identities=28%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             EEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEE
Q ss_conf             0888985998898995655988998998898986686891684686553114342232
Q gi|255764481|r   14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG   71 (271)
Q Consensus        14 A~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig   71 (271)
                      +.+.+.+.|++++.|++.+.|++++.||+||+|+.++.|. ++.|.++|.|++++.|+
T Consensus       256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~Sii~~~~~i~~~~~i~  312 (358)
T COG1208         256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK-NSIIMDNVVIGHGSYIG  312 (358)
T ss_pred             EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEEE-EEEEECCCEECCCCEEC
T ss_conf             3885894982697898884868987899998889987787-54887787988888882


No 84 
>KOG1461 consensus
Probab=99.05  E-value=4.2e-10  Score=83.64  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=77.0

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             99756551088898599889899565598899899889898668689168468655311434223210233312222223
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE   85 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~   85 (271)
                      .+..+.+++.+..+..||.+.+||..+.| .|.+||.||.|+++++|. ++.|++||+|+.+|.|.             .
T Consensus       320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~-~S~iw~~v~Igdnc~I~-------------~  384 (673)
T KOG1461         320 PDVVLSHSVIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIK-NSFIWNNVTIGDNCRID-------------H  384 (673)
T ss_pred             CCCEEHHHCCCCCEEEECCCCCCCCCCEE-ECCEECCCCEECCCEEEE-EEEEECCCEECCCCEEE-------------E
T ss_conf             40100012012440795145412679855-522665897745745885-13662583887886573-------------4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf             3222222212244321111222222122332000016655
Q gi|255764481|r   86 LLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHV  125 (271)
Q Consensus        86 v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI  125 (271)
                      ..|+|++.|++++.+.+|...+ ...++|++-.+-.|+.|
T Consensus       385 aii~d~v~i~~~~~l~~g~vl~-~~VVv~~~~~l~~ns~~  423 (673)
T KOG1461         385 AIICDDVKIGEGAILKPGSVLG-FGVVVGRNFVLPKNSKV  423 (673)
T ss_pred             EEEECCCEECCCCCCCCCCEEE-EEEEECCCCCCCCCCCC
T ss_conf             6860583767884407885775-21686798312454433


No 85 
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.04  E-value=7.2e-10  Score=82.20  Aligned_cols=12  Identities=25%  Similarity=0.393  Sum_probs=3.9

Q ss_pred             CCCEEECCCCEE
Q ss_conf             551088898599
Q gi|255764481|r   11 HPLALVEEGAVI   22 (271)
Q Consensus        11 hpsA~I~~~a~I   22 (271)
                      .|.+++.++|+|
T Consensus       280 ~~p~~i~~~~~I  291 (381)
T PRK05293        280 LPPQYIAENAKV  291 (381)
T ss_pred             CCCEEECCCCEE
T ss_conf             899298799789


No 86 
>PRK10502 putative colanic acid biosynthesis acetyltransferase WcaF; Provisional
Probab=99.01  E-value=1.1e-09  Score=81.01  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             CCCCCCCEECCCEEEC--CCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECCCC
Q ss_conf             5057997565510888--985998898995655988--998998898986686891684
Q gi|255764481|r    2 SRMGNNPIIHPLALVE--EGAVIGPNSLIGPFCCVG--SEVEIGAGVELISHCVVAGKT   56 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~--~~a~Ig~~v~Igp~~~I~--~~v~IG~~~~I~~~v~I~g~t   56 (271)
                      ++|++++.|+|++.|.  -..+||+++.||++|.|.  +.++||++|.|.+++.|...+
T Consensus        53 AkIG~~v~I~p~v~I~~PwnL~IGd~~~Ig~~v~i~~~~~I~IG~~v~Isq~v~l~t~s  111 (179)
T PRK10502         53 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVVLYTLGEITIGAHCVISQKSYLCTGS  111 (179)
T ss_pred             CEECCCCEECCCCEEEECCCEEECCCCEECCCCEEEECCCCEECCCEEECCCCEEECCC
T ss_conf             86799988999657950430798896578898189848961798841277971896388


No 87 
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.00  E-value=1.7e-09  Score=79.83  Aligned_cols=16  Identities=6%  Similarity=-0.093  Sum_probs=6.3

Q ss_pred             CCEEEEEEECCCCCEE
Q ss_conf             8468655311434223
Q gi|255764481|r   55 KTKIGDFTKVFPMAVL   70 (271)
Q Consensus        55 ~t~IG~~~~I~~~a~I   70 (271)
                      ++.||++|.|+++|.|
T Consensus       308 nSvIg~~v~Ig~ga~I  323 (381)
T PRK05293        308 HSVLFQGVQVGEGSIV  323 (381)
T ss_pred             CCEECCCCEECCCCEE
T ss_conf             4898899899999999


No 88 
>KOG4042 consensus
Probab=98.98  E-value=4.2e-10  Score=83.69  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=85.6

Q ss_pred             CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC---CCCEEEEEEECCCCCEEEECCCC-CCCCCCC
Q ss_conf             7565510888985998898995655988998998898986686891---68468655311434223210233-3122222
Q gi|255764481|r    8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVA---GKTKIGDFTKVFPMAVLGGDTQS-KYHNFVG   83 (271)
Q Consensus         8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~---g~t~IG~~~~I~~~a~Ig~~~qd-~~~~g~~   83 (271)
                      ..|-|+|++--.+            -|.++|.|+++|+++|.+++.   |...||+||.|..+|+|-..-.+ .-+..+.
T Consensus         9 vkIap~AvVCvEs------------~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~   76 (190)
T KOG4042           9 VKIAPSAVVCVES------------DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDG   76 (190)
T ss_pred             EEECCCEEEEEEC------------CCCCCEEECCCCEECCEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             4645751899860------------2133148658838533079970569889866712566788770068887547899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC
Q ss_conf             23322222221224432111122222212233200001665543310012344322345245532148606523444336
Q gi|255764481|r   84 TELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ  163 (271)
Q Consensus        84 ~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~  163 (271)
                      ..+.||++|+|.-+|...        .-++||+|.|...+++      |++|                            
T Consensus        77 ~pmiIGt~NvFeVgc~s~--------A~kvGd~NVieskayv------g~gv----------------------------  114 (190)
T KOG4042          77 QPMIIGTWNVFEVGCKSS--------AKKVGDRNVIESKAYV------GDGV----------------------------  114 (190)
T ss_pred             CEEEEECCCEEEEECHHH--------HHHHCCCCEEEEEEEE------CCCC----------------------------
T ss_conf             767872363588612334--------5551676547666686------4994----------------------------


Q ss_pred             CEEEECCCEEECCCCC--CCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHH---HHHHHHCCCCH
Q ss_conf             5064047435013211--22333310001074532334420144428889999999999---99997279989
Q gi|255764481|r  164 FTRIGKYAFIGGMTGV--VHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAV---YKQIFQQGDSI  231 (271)
Q Consensus       164 ~v~IG~~a~ig~gs~V--~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~a---yr~lfr~~~~l  231 (271)
                        .+-++|.|||+..+  .+.+|+...+.|..    +|-++-..|.+-..-+|..|++.   |--||+.....
T Consensus       115 --~vssgC~vGA~c~v~~~q~lpent~vYga~----~L~R~~~~~~~~qtlQidFLrKiLPnYHHL~k~~~~~  181 (190)
T KOG4042         115 --SVSSGCSVGAKCTVFSHQNLPENTSVYGAT----NLSRTTKTPNMTQTLQIDFLRKILPNYHHLYKKKKAV  181 (190)
T ss_pred             --EECCCCEECCCEEEECCCCCCCCCEEECCC----CCCCEECCCCCCCCCHHHHHHHHCCCHHHHHCCCCCC
T ss_conf             --872796541405771103469751687213----4010002799986220789998761145552565553


No 89 
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.98  E-value=1.8e-09  Score=79.72  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEEC
Q ss_conf             012344322345245532148606523444336506404743501
Q gi|255764481|r  131 LGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG  175 (271)
Q Consensus       131 IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~  175 (271)
                      ||++|+|+.++.+.+.++|+|+++||+++.|..  .+-+++++.+
T Consensus        57 Ig~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~--dv~~~si~~G   99 (101)
T cd03354          57 IGDNVVIGAGAKILGNITIGDNVKIGANAVVTK--DVPANSTVVG   99 (101)
T ss_pred             CCCCEEECCCCEEECCCEECCCCEECCCCEECC--CCCCCCEEEE
T ss_conf             487586358988929879999879987988996--8599989980


No 90 
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.97  E-value=1.2e-09  Score=80.73  Aligned_cols=46  Identities=26%  Similarity=0.446  Sum_probs=27.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEEC
Q ss_conf             310012344322345245532148606523444336506404743501
Q gi|255764481|r  128 DCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG  175 (271)
Q Consensus       128 d~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~  175 (271)
                      .+.||++|.++.++.+...++|+++++||+++.|...  +-+++++.+
T Consensus        58 ~v~Ig~~v~IG~~~~I~~gv~Ig~~~iIga~SvV~k~--i~~~~i~~G  103 (109)
T cd04647          58 PIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAG  103 (109)
T ss_pred             CEEEECCCEECCCEEEEECCEECCCCEECCCCEECCC--CCCCCEEEE
T ss_conf             9799423578898399285130898699379889148--399989997


No 91 
>KOG4042 consensus
Probab=98.95  E-value=8.1e-10  Score=81.87  Aligned_cols=76  Identities=24%  Similarity=0.353  Sum_probs=49.5

Q ss_pred             ECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCC--CCCCCCCC
Q ss_conf             988989866868916846865531143422321023331222222332222222122443211----112--22222122
Q gi|255764481|r   40 IGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----GTV--EYGGKTIV  113 (271)
Q Consensus        40 IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~----gt~--~~~~~T~I  113 (271)
                      |-...++---+.|+|+++|+++|.++|++++-.+         .....||++|.|.|+++|-.    |..  .++..-.|
T Consensus        11 Iap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~---------aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiI   81 (190)
T KOG4042          11 IAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIAT---------AGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMII   81 (190)
T ss_pred             ECCCEEEEEECCCCCCEEECCCCEECCEEEEECC---------CCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf             4575189986021331486588385330799705---------6988986671256678877006888754789976787


Q ss_pred             CCCCHHCCCCC
Q ss_conf             33200001665
Q gi|255764481|r  114 GDNNFFLANSH  124 (271)
Q Consensus       114 G~~~~i~~~~h  124 (271)
                      |.+|.|..+++
T Consensus        82 Gt~NvFeVgc~   92 (190)
T KOG4042          82 GTWNVFEVGCK   92 (190)
T ss_pred             ECCCEEEEECH
T ss_conf             23635886123


No 92 
>KOG3121 consensus
Probab=98.95  E-value=1e-09  Score=81.22  Aligned_cols=139  Identities=17%  Similarity=0.282  Sum_probs=84.2

Q ss_pred             CCCEECCCCEECCCCEECC---CCEEEEEEECCCCCEEEECCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9989988989866868916---84686553114342232102333122-2-22233222222212244321111222222
Q gi|255764481|r   36 SEVEIGAGVELISHCVVAG---KTKIGDFTKVFPMAVLGGDTQSKYHN-F-VGTELLVGKKCVIREGVTINRGTVEYGGK  110 (271)
Q Consensus        36 ~~v~IG~~~~I~~~v~I~g---~t~IG~~~~I~~~a~Ig~~~qd~~~~-g-~~~~v~IG~~~~Ire~v~I~~gt~~~~~~  110 (271)
                      .|..|.--+.+.+.++|+|   ++++|+.|.+...++|...  -..|. + ..-.+.|||++.|.|.|.++.++      
T Consensus        32 QNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp--~K~FSKg~affp~hiGdhVFieE~cVVnAAq------  103 (184)
T KOG3121          32 QNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPP--MKIFSKGPAFFPVHIGDHVFIEEECVVNAAQ------  103 (184)
T ss_pred             CEEEECCCEEEEECCEEECCCCCCEECCEEEECCCCCCCCC--HHHHCCCCEEEEEEECCEEEEECCEEEEHHH------
T ss_conf             32798372798608589512010247336896466543770--6775678624566524568870441862666------


Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHH
Q ss_conf             12233200001665543310012344322345245532148606523444336506404743501321122333310001
Q gi|255764481|r  111 TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILN  190 (271)
Q Consensus       111 T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~  190 (271)
                        |      ++|+|+|.+|.||++|++-..      +.|.|++++-..+.                      +|||+...
T Consensus       104 --I------gsyVh~GknaviGrrCVlkdC------c~ild~tVlPpet~----------------------vppy~~~~  147 (184)
T KOG3121         104 --I------GSYVHLGKNAVIGRRCVLKDC------CRILDDTVLPPETL----------------------VPPYSTIG  147 (184)
T ss_pred             --H------EEEEEECCCEEECCCEEHHHH------EECCCCCCCCCCCC----------------------CCCCEEEC
T ss_conf             --1------203685464067375083341------04158952582013----------------------69716773


Q ss_pred             HCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             074532334420144428889999999999999
Q gi|255764481|r  191 GNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQ  223 (271)
Q Consensus       191 G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~  223 (271)
                      |+|+...|     ...+-...+-|...+.-|..
T Consensus       148 g~p~~~~G-----~~P~ctq~lMi~~tksyY~~  175 (184)
T KOG3121         148 GNPAQVVG-----TEPRCTQNLMIEATKSYYDN  175 (184)
T ss_pred             CCCCEEEC-----CCCHHHHHHHHHHHHHHHHH
T ss_conf             88723531-----57302689999999999983


No 93 
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974    Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.94  E-value=2.4e-09  Score=78.93  Aligned_cols=130  Identities=18%  Similarity=0.375  Sum_probs=80.1

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf             57997565510888985998898995655988998998898986686891684686553114342232102333122222
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVG   83 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~   83 (271)
                      ...++++||+|+.=.++.||+.|+|||.+-+.+|-               |...+-++..|...|+.-+-      .+..
T Consensus        11 Vhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDF---------------GrIvl~eGAN~QD~CVMHGF------Pg~D   69 (193)
T TIGR02287        11 VHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDF---------------GRIVLKEGANVQDTCVMHGF------PGQD   69 (193)
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCC---------------CCEEEECCCCCCCCCEECCC------CCCC
T ss_conf             69877346863786217887952467663135775---------------72575348861464243672------9988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCC
Q ss_conf             23322222221224432111122222212233200001665543310012344322345245532148606523444336
Q gi|255764481|r   84 TELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQ  163 (271)
Q Consensus        84 ~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~  163 (271)
                      |  .+++|=                   .||...       |=|.|.||.|..++-|+.+--...|++++++++.+.|..
T Consensus        70 T--vVeenG-------------------HvGHgA-------iLHgC~vgrnaLvGMNAVVMDgAvige~sIVaA~aFVKA  121 (193)
T TIGR02287        70 T--VVEENG-------------------HVGHGA-------ILHGCRVGRNALVGMNAVVMDGAVIGERSIVAASAFVKA  121 (193)
T ss_pred             E--EEECCC-------------------CCCCCE-------EECCCEECCCCEECCCEEEECCCEECCCCCEEHHHHHHC
T ss_conf             6--760688-------------------233212-------351546325231116506616646677412002033434


Q ss_pred             CEEEECCCEEECC-CCCCCC
Q ss_conf             5064047435013-211223
Q gi|255764481|r  164 FTRIGKYAFIGGM-TGVVHD  182 (271)
Q Consensus       164 ~v~IG~~a~ig~g-s~V~kd  182 (271)
                      ...+-...+|.|- |.|.+.
T Consensus       122 g~E~paq~Lv~GsPAkv~R~  141 (193)
T TIGR02287       122 GAEIPAQVLVVGSPAKVVRE  141 (193)
T ss_pred             CCCCCCCCEEECCCCEEEEC
T ss_conf             73478461266287305533


No 94 
>KOG1460 consensus
Probab=98.94  E-value=1.6e-09  Score=80.01  Aligned_cols=69  Identities=32%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEEC-----CCCEECCCCEECCCCEEEEEEECCCCCEEEEC
Q ss_conf             57997565510888985998898995655988998998-----89898668689168468655311434223210
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIG-----AGVELISHCVVAGKTKIGDFTKVFPMAVLGGD   73 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG-----~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~   73 (271)
                      |=-+.+|||||.+||+|+||+||.||+.+.|+++|+|-     +++.|..|+++. ++.||-.|.|+.-+.+.+.
T Consensus       285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl-~sIigw~s~iGrWaRVe~~  358 (407)
T KOG1460         285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL-HSIIGWKSSIGRWARVEGI  358 (407)
T ss_pred             EEEEEEECCCCEECCCCCCCCCCEECCCCEECCCCEEEEEEECCCCEEECCCEEE-EEEECCCCCCCCEEEECCC
T ss_conf             8742477675404776620897144688254688266545602673762163677-6541144322542430146


No 95 
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.93  E-value=3.8e-09  Score=77.67  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             CCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89989988989866868916846865531143422321023331222222332222222122443211112222221223
Q gi|255764481|r   35 GSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVG  114 (271)
Q Consensus        35 ~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG  114 (271)
                      ...|.|+++++|.|+++|++++.||++|.|.|+|.|.+            .+.||++|.|+.  -             | 
T Consensus         9 ~GpV~I~~~~~I~~~~~i~Gp~~IG~~~~I~p~a~Ir~------------~t~Ig~~~~IG~--E-------------i-   60 (101)
T cd05635           9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYG------------NTTIGPTCKIGG--E-------------V-   60 (101)
T ss_pred             CCCEEECCCCEECCCCEEECCEEECCCCEECCCCEEEC------------CCEECCCCEECC--E-------------E-
T ss_conf             89999879999999999976669999999999978638------------879999977614--0-------------8-


Q ss_pred             CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCC
Q ss_conf             3200001665543310012344322345245532148606523444
Q gi|255764481|r  115 DNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSA  160 (271)
Q Consensus       115 ~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~  160 (271)
                      .++.|+.++++.|...|||             ..||++|.||+++.
T Consensus        61 k~S~i~~~s~~~H~~YlGD-------------S~iG~~vNiGAGT~   93 (101)
T cd05635          61 EDSIIEGYSNKQHDGFLGH-------------SYLGSWCNLGAGTN   93 (101)
T ss_pred             EEEEEECCCCCCCCCEEEE-------------EEECCCCEECCCCE
T ss_conf             7618857875687758761-------------17838757877857


No 96 
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.91  E-value=2.2e-09  Score=79.16  Aligned_cols=113  Identities=20%  Similarity=0.307  Sum_probs=64.5

Q ss_pred             CCEECC--CCEECCCCEECCCCEECCCCEEC--CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             989956--55988998998898986686891--68468655311434223210233312222223322222221224432
Q gi|255764481|r   25 NSLIGP--FCCVGSEVEIGAGVELISHCVVA--GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTI  100 (271)
Q Consensus        25 ~v~Igp--~~~I~~~v~IG~~~~I~~~v~I~--g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I  100 (271)
                      ++.|.|  +|--|-|..||+++.+..+++|.  +.++||+++.|+|++.|-.....+...                    
T Consensus        59 ~~~I~ppF~cdYG~ni~iG~~~~iN~~~~ilD~~~I~IG~~v~iGpnv~i~t~~Hp~d~~--------------------  118 (183)
T PRK10092         59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPIHIGDNCMLAPGVHIYTATHPLDPV--------------------  118 (183)
T ss_pred             CCEEECCEEEECCCCEEECCCEEEECCEEEEECCCEEECCCEEECCCCEEECCCCCCCHH--------------------
T ss_conf             837958888406778786787699278499947873999980584997898599988988--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC
Q ss_conf             1111222222122332000016655433100123443223452455321486065234443365064047435013
Q gi|255764481|r  101 NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM  176 (271)
Q Consensus       101 ~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g  176 (271)
                                .+-       .+...+.-..||++|+++.++.+...|+|||+++||++++|...  |-+++++++.
T Consensus       119 ----------~R~-------~~~~~~~pi~Ig~~vwig~~~~i~pGv~IG~~~vigagsvV~~d--ip~~~v~~G~  175 (183)
T PRK10092        119 ----------ARN-------SGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  175 (183)
T ss_pred             ----------HHH-------CCCEECCCEEECCCCEECCCCEEECCCEECCCCEECCCCEEEEE--CCCCCEEEEE
T ss_conf             ----------952-------58631687798998688899899079899999899759889227--7999299974


No 97 
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.90  E-value=7e-09  Score=76.00  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=20.2

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             9889899565598899899889898668689168468655311434223
Q gi|255764481|r   22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus        22 Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      ||++++|++++.| ++..||++|+|++++.|. ++.|.+++.|++++.|
T Consensus         2 IG~~t~Ig~~~~I-~~svIG~nc~Ig~~~~I~-~svi~d~~~Ig~~~~i   48 (79)
T cd05787           2 IGRGTSIGEGTTI-KNSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTI   48 (79)
T ss_pred             CCCCCEECCCCEE-ECCEECCCCEECCCCEEE-CCEEECCCEECCCCEE
T ss_conf             9998999999999-599989999999998894-8999197899999999


No 98 
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.88  E-value=6.3e-09  Score=76.30  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCC
Q ss_conf             310012344322345245532148606523444336506404743501321122333
Q gi|255764481|r  128 DCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVI  184 (271)
Q Consensus       128 d~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVp  184 (271)
                      +++||.+|.+++++.+. ++.|.+++.||.++.|. .+-|++++.||.|++|..|.-
T Consensus       331 nSvIg~~v~Ig~ga~I~-nSII~~~~~Ig~~a~I~-~sIidk~v~Ig~gt~I~~~~~  385 (409)
T PRK00844        331 NSVLSPNVRVDSGAIVE-GSVLMDGVRIGRGAVVR-RAILDKNVVVPPGTQIGVDLE  385 (409)
T ss_pred             CCEECCCCEECCCCEEE-CCEEECCCEECCCCEEE-EEEECCCCEECCCCEECCCCH
T ss_conf             88977998999998995-18992949999999998-019899989899989897804


No 99 
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.88  E-value=3.8e-09  Score=77.68  Aligned_cols=105  Identities=20%  Similarity=0.241  Sum_probs=63.4

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             95655988998998898986686891684686553114342232102333122222233222222212244321111222
Q gi|255764481|r   28 IGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEY  107 (271)
Q Consensus        28 Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~  107 (271)
                      ++. ++|.+.+.||++|.|++++.|.+++.||++|.|++.+.|..             ..|.+++.|..++.+       
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~-------------Sii~~~~~i~~~~~i-------  311 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN-------------SIIMDNVVIGHGSYI-------  311 (358)
T ss_pred             CCC-EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEEEE-------------EEEECCCEECCCCEE-------
T ss_conf             662-38858949826978988848689878999988899877875-------------488778798888888-------


Q ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCC
Q ss_conf             222122332000016655433100123443223452455321486065234443365064047435013211
Q gi|255764481|r  108 GGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGV  179 (271)
Q Consensus       108 ~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V  179 (271)
                                        . +++||++|.++++  +    .++| +.+|.++.+.+.++++..+.+..+..+
T Consensus       312 ------------------~-~sIi~~~~~ig~~--~----~i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~  357 (358)
T COG1208         312 ------------------G-DSIIGENCKIGAS--L----IIGD-VVIGINSEILPGVVVGPGSVVESGEIE  357 (358)
T ss_pred             ------------------C-CEEECCCCEECCC--C----EEEE-EEECCCEEECCCEEECCCCCCCCCCCC
T ss_conf             ------------------2-0698188599986--1----5701-586366086276184786061576303


No 100
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.83  E-value=8.4e-09  Score=75.53  Aligned_cols=64  Identities=19%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             5799756551088898599889899565598899899889898668689168468655311434223
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      |++++.|.+.+.|. ...||+||+||+.|.| .+..|.++++|++++.|. ++.|++++.|++++.|
T Consensus         2 IG~~t~Ig~~~~I~-~svIG~nc~Ig~~~~I-~~svi~d~~~Ig~~~~i~-~siI~~~~~Ig~~~~i   65 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVI-DNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTI   65 (79)
T ss_pred             CCCCCEECCCCEEE-CCEECCCCEECCCCEE-ECCEEECCCEECCCCEEC-CCEECCCCEECCCCEE
T ss_conf             99989999999995-9998999999999889-489991978999999990-8999798999999999


No 101
>TIGR01172 cysE serine O-acetyltransferase; InterPro: IPR005881    The biosynthesis of L-cysteine is the predominant way by which inorganic sulphur is incorporated into organic compounds. In this process, the most abundant utilizable source of sulphur, inorganic sulphate, is taken up and reduced to sulphide. Sulphide is used to produce L-cysteine, which serves for protein synthesis or the production of other sulphur-containing organic compounds. Two routes for cysteine biosynthesis in nature have been documented. Serine transacetylase (2.3.1.30 from EC) catalyzes steps in pathway I, the activation of L-serine by acetyl-coenzyme A, yielding O-acetyl-L-serine.; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm.
Probab=98.80  E-value=6.8e-09  Score=76.12  Aligned_cols=71  Identities=24%  Similarity=0.399  Sum_probs=51.8

Q ss_pred             CCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             86891684686553114342232102333122222233222222212244321111222222122332000016655433
Q gi|255764481|r   49 HCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD  128 (271)
Q Consensus        49 ~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd  128 (271)
                      +++|.+-++||+|+.|+++++||+-           .-+=|              +  ...+|                 
T Consensus        81 GvVIGETa~iGddv~iyhGVTLGGt-----------gk~~G--------------~--kRHPt-----------------  116 (163)
T TIGR01172        81 GVVIGETAEIGDDVTIYHGVTLGGT-----------GKEKG--------------V--KRHPT-----------------  116 (163)
T ss_pred             CEEEEEEEEECCCEEEEECEEECCC-----------CCCCC--------------C--CCCCC-----------------
T ss_conf             3685003687388378632120678-----------88878--------------8--98882-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCE
Q ss_conf             1001234432234524553214860652344433650
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT  165 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v  165 (271)
                        |+++|+|+.+|.+-|+.+||++|.||++|+|.+.|
T Consensus       117 --~~~gV~iGAGAKvLG~I~vG~~AkiGAnsVVl~dV  151 (163)
T TIGR01172       117 --IGEGVVIGAGAKVLGNIEVGENAKIGANSVVLKDV  151 (163)
T ss_pred             --CCCCEEEEECCEEECCEEECCCCEECCCEEECCCC
T ss_conf             --56871784078240376677997772332673537


No 102
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; InterPro: IPR012728    This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size..
Probab=98.76  E-value=4.2e-09  Score=77.44  Aligned_cols=72  Identities=21%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             CCCCCCCEECC-CEE-ECCCCEECCCCEECCCCEEC-----------CCCEECCCCEECCCCEECCCCEEEEEEECCCCC
Q ss_conf             50579975655-108-88985998898995655988-----------998998898986686891684686553114342
Q gi|255764481|r    2 SRMGNNPIIHP-LAL-VEEGAVIGPNSLIGPFCCVG-----------SEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA   68 (271)
Q Consensus         2 ~~i~~~~~Ihp-sA~-I~~~a~Ig~~v~Igp~~~I~-----------~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a   68 (271)
                      +|||+++.||. +.. +++=.+||+|+.|..++.+.           +.|+||++..||..+++..||.||+...+.+.+
T Consensus       119 akiG~~v~i~s~~~p~~tDLl~iG~~~~v~~~v~l~g~r~~~g~l~~G~v~~g~~A~vG~~s~l~~~t~iG~~a~L~~~S  198 (719)
T TIGR02353       119 AKIGKGVDIGSKLPPVCTDLLTIGDGVIVEKEVMLLGYRVERGRLRIGPVRIGDDAFVGTRSVLDIDTAIGDRAQLGHGS  198 (719)
T ss_pred             CCCCCCEEECCCCCEEEEEEEECCCCEEEECCCCEEEEEEECCEEEEEEEEECCCEEEEEEEEECCCCCCCCHHCCCCCC
T ss_conf             00068537546555366300450786364034101100021584686328983716872013747887236502035546


Q ss_pred             EEEEC
Q ss_conf             23210
Q gi|255764481|r   69 VLGGD   73 (271)
Q Consensus        69 ~Ig~~   73 (271)
                      .+-.+
T Consensus       199 al~~g  203 (719)
T TIGR02353       199 ALAGG  203 (719)
T ss_pred             CCCCC
T ss_conf             46688


No 103
>PRK03282 consensus
Probab=98.76  E-value=2.8e-08  Score=72.23  Aligned_cols=54  Identities=24%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCHHHHCCCC
Q ss_conf             3452455321486065234443365064047435013211223--3331000107453
Q gi|255764481|r  140 NVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGILNGNPGA  195 (271)
Q Consensus       140 ~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~~~G~pa~  195 (271)
                      ++.|+..|+|+++|.| -+|.|+|.++||++|.+ -.|++-+|  |++.+...+.|.+
T Consensus       329 nSvIg~~v~Ig~ga~I-~~SIIm~~~~Ig~~a~l-~~~Iidk~v~Ig~g~~Ig~~~~~  384 (406)
T PRK03282        329 NSVLSPNVVVDSGAIV-EGSVLMPGVRIGRGAVV-RHAILDKNVVVPPGAMVGVDPER  384 (406)
T ss_pred             CCEECCCCEECCCCEE-ECCEEECCCEECCCCEE-ECCEECCCCEECCCCEECCCCCC
T ss_conf             9997899899999899-70889096899999999-73198999999989899988420


No 104
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.74  E-value=2.3e-08  Score=72.79  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC-CCCCCCCCC
Q ss_conf             223452455321486065234443365064047435013-211223333
Q gi|255764481|r  138 SNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM-TGVVHDVIP  185 (271)
Q Consensus       138 ~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g-s~V~kdVpp  185 (271)
                      +.++.+...|+||++++||++++|..  .|-++++++|. +.+.|.+.+
T Consensus       141 G~~~~I~pGv~IG~~~vigAgsvVtk--dip~~~v~~G~Parvir~i~~  187 (203)
T PRK09527        141 GSHVVINPGVTIGDNSVIGAGSVVTK--DIPPNVVAAGVPCRVIREIND  187 (203)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECC--CCCCCCEEEEECCEEEEECCH
T ss_conf             99999909929999979914988853--069982999628288986898


No 105
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.73  E-value=3.6e-08  Score=71.61  Aligned_cols=117  Identities=22%  Similarity=0.314  Sum_probs=61.4

Q ss_pred             EECCCCEECC--CCEECCCCEECCCCEECCCCEEC--CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9988989956--55988998998898986686891--6846865531143422321023331222222332222222122
Q gi|255764481|r   21 VIGPNSLIGP--FCCVGSEVEIGAGVELISHCVVA--GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE   96 (271)
Q Consensus        21 ~Ig~~v~Igp--~~~I~~~v~IG~~~~I~~~v~I~--g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire   96 (271)
                      .+|+++.|.|  +|--+-+.+||+++.|..+++|.  +..+||+++.|+|++.|-.....+.    +             
T Consensus        44 ~~g~~~~I~~pf~~dyG~ni~iG~~~~in~n~~ild~~~I~IG~~v~igp~v~i~t~~H~~d----~-------------  106 (169)
T cd03357          44 SVGENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLD----P-------------  106 (169)
T ss_pred             CCCCCCEEECCEEEECCCCEEECCEEEECCCCEEEECCCEEECCCEEECCCCEEECCCCCCC----H-------------
T ss_conf             68999589788898343677988844887884897068879999807879858976899999----7-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC
Q ss_conf             44321111222222122332000016655433100123443223452455321486065234443365064047435013
Q gi|255764481|r   97 GVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM  176 (271)
Q Consensus        97 ~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g  176 (271)
                                   ..+-       .+...+.-..|||+|+|+.++.+...|+||++++||++++|-..  |-+++++++.
T Consensus       107 -------------~~r~-------~~~~~~~PI~Igd~vWIG~~~~IlpGVtIG~~~vIgAGsVVtkd--ip~~~v~~Gn  164 (169)
T cd03357         107 -------------EERN-------RGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN  164 (169)
T ss_pred             -------------HHHH-------CCCCCCCCEEECCCCEECCCCEEECCCEECCCCEECCCCEECCC--CCCCEEEEEE
T ss_conf             -------------8963-------46652455698974362899789099799999999889879746--5999199975


No 106
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; InterPro: IPR005664   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants .    2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (also known as tetrahydrodipicolinate N-succinyltransferase or DapD) is part of the succinyl route of of lysine/DAP biosynthesis. The DapD protein is a homotrimer is a trimeric enzyme with each monomer composed of three domain: an N-terminal helical domain, a distinctive left-handed parallel beta-helix (LBH) domain, and a predominantly beta C-terminal domain , . The LBH structure is encoded by an imperfect tandem-repeated hexapeptide sequence. Each trimer contains three independent active sites, always occuring at the boundary of two subunits, and formed by residues from one N-terminal domain, one C-terminal domain and two adjacent LBH domains.; GO: 0016757 transferase activity transferring glycosyl groups, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=98.71  E-value=9.2e-09  Score=75.28  Aligned_cols=114  Identities=25%  Similarity=0.295  Sum_probs=94.3

Q ss_pred             ECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             65510888985998898995655988998998898986686891684686553114342232102333122222233222
Q gi|255764481|r   10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVG   89 (271)
Q Consensus        10 IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG   89 (271)
                      .=|.|++-.++.|++|+.+.| +||.=++.|.+++.|..-++|..-+.||+||++.=++=||+--..|            
T Consensus       106 ~VPgA~vR~G~fiAkNvVlMP-SyvNIGAYvDEGtMvDTWATvGSCAQIGKNvHlSGG~GIGGVLEPL------------  172 (275)
T TIGR00965       106 KVPGAIVRRGTFIAKNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPL------------  172 (275)
T ss_pred             CCCHHHEECCCEEEEEEEECC-CEEECCCEEECCCEECCHHHHCCHHHHCCCEEEECCCCCCCCCCCC------------
T ss_conf             487436005735775237755-5210136751686010012230032206625751783316524633------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE
Q ss_conf             2222122443211112222221223320000166554331001234432234524553214860
Q gi|255764481|r   90 KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV  153 (271)
Q Consensus        90 ~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~  153 (271)
                                       .-.+|.|.||||+++-+-|..++++.++.+|+.++.++..++|-|+-
T Consensus       173 -----------------QA~P~IIEDNCFiGARSEi~EGVIVEEGSVISMGVfIG~STkI~~R~  219 (275)
T TIGR00965       173 -----------------QAKPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIVDRD  219 (275)
T ss_pred             -----------------CCCCEEEECCCEECCCEEEEEEEEECCCCEEEEEEEECCCCEEEECC
T ss_conf             -----------------57875882476004611356207971685888406855601688536


No 107
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.71  E-value=6.1e-08  Score=70.13  Aligned_cols=47  Identities=19%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             9889899565598899899889898668689168468655311434223
Q gi|255764481|r   22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus        22 Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      ||++++|++++.|+ +..||++|.|++++.|. ++.|.+++.|+++|.|
T Consensus         2 IG~~~~Ig~~~~I~-~svIG~~c~Ig~~~~I~-~Sii~~~~~Ig~~~~i   48 (79)
T cd03356           2 IGESTVIGENAIIK-NSVIGDNVRIGDGVTIT-NSILMDNVTIGANSVI   48 (79)
T ss_pred             CCCCCEECCCCEEE-CCEECCCCEECCCCEEE-EEEEECCCEECCCCEE
T ss_conf             98979999999995-99999999999996996-1099797999999999


No 108
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.70  E-value=6.3e-08  Score=70.07  Aligned_cols=51  Identities=25%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC-CCCCC
Q ss_conf             100123443223452455321486065234443365064047435013-21122
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM-TGVVH  181 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g-s~V~k  181 (271)
                      +.||++|.|+.++.+-..++||++++||++++|-..  +-.++++++. |.+.|
T Consensus        74 i~Ig~~vwIG~n~~Il~GV~IG~gavIgAgSvVtkd--vp~~~i~~G~PAk~ik  125 (145)
T cd03349          74 VIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIR  125 (145)
T ss_pred             EEECCCEEECCCCEEECCCEECCCCEEECCCEECCC--CCCCCEEEEECCEEEE
T ss_conf             798899699998889588096788689289789704--6999499833887881


No 109
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.69  E-value=2.6e-08  Score=72.45  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC
Q ss_conf             3100123443223452455321486065234443365064047435013
Q gi|255764481|r  128 DCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM  176 (271)
Q Consensus       128 d~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g  176 (271)
                      .+.||++|+++.++.+...++|+|++++|+++.|..  .+-+++++++.
T Consensus        56 ~v~Ig~~v~IG~~~~I~~gv~Ig~~svVgagSvV~k--dvp~~~i~~G~  102 (107)
T cd05825          56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVR--DLPAWTVYAGN  102 (107)
T ss_pred             CEEECCCCEECCCCEEECCCEECCCCEEECCCEECC--CCCCCCEEEEE
T ss_conf             979938858749878969919189979948988903--85999799814


No 110
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.69  E-value=3.3e-08  Score=71.80  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=11.8

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEE
Q ss_conf             5799756551088898599889899565598
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCV   34 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I   34 (271)
                      |++++.|.+.|.|.+ ..||++|.||+.+.|
T Consensus         2 IG~~~~Ig~~~~I~~-svIG~~c~Ig~~~~I   31 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTI   31 (79)
T ss_pred             CCCCCEECCCCEEEC-CEECCCCEECCCCEE
T ss_conf             989799999999959-999999999999699


No 111
>PRK10191 putative colanic acid biosynthesis acetyltransferase WcaB; Provisional
Probab=98.68  E-value=4.5e-08  Score=70.98  Aligned_cols=43  Identities=35%  Similarity=0.656  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEEC
Q ss_conf             012344322345245532148606523444336506404743501
Q gi|255764481|r  131 LGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG  175 (271)
Q Consensus       131 IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~  175 (271)
                      |||+|.++.++.+-|.++|||++.||+++.|..  .+-+++.+.+
T Consensus        95 Ig~~V~Igaga~IlG~i~IG~~~~IGA~svV~~--dvp~~~~v~G  137 (146)
T PRK10191         95 IGNGVELGANVIILGDITLGNNVTVGAGSVVLD--SVPDNALVVG  137 (146)
T ss_pred             ECCCEEEECCCEEECCCEECCCCEECCCCEECC--CCCCCCEEEE
T ss_conf             799959928999964859999999998958970--3599999997


No 112
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; InterPro: IPR012728    This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size..
Probab=98.68  E-value=2.1e-08  Score=73.05  Aligned_cols=84  Identities=21%  Similarity=0.338  Sum_probs=66.9

Q ss_pred             CCCCCCCHHCCCCCCCCC-CCCCCCCCCCCCCCCC-----------CCCEECCCEEECCCCCCCCCEEEECCCEEECCCC
Q ss_conf             122332000016655433-1001234432234524-----------5532148606523444336506404743501321
Q gi|255764481|r  111 TIVGDNNFFLANSHVAHD-CKLGNGIVLSNNVMIA-----------GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTG  178 (271)
Q Consensus       111 T~IG~~~~i~~~~hI~Hd-~~IG~~vii~n~~~l~-----------G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~  178 (271)
                      .+||+++|+..+--=.|| |.||+.+.+-.++.+-           .+|+|+|+|.+|..+.||..+.||+.|.+|-.|.
T Consensus       622 ~kiGr~v~~d~~~ltE~dLv~IG~d~tlN~G~~~QtHlfeDRv~k~D~v~igdgatlG~~aiVlY~~~~G~~a~lgp~Sl  701 (719)
T TIGR02353       622 VKIGRGVYIDTTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGAVVGEDAVLGPDSL  701 (719)
T ss_pred             CEECCCCEECCCCCCCHHHEEECCCCEECCCCCEECCCCCCCEEEECEEEEECEEEECCCCEECCCEEECCCCEECCCCE
T ss_conf             24555322267567522203656861246875111140006756745289724038888635857315568643468432


Q ss_pred             CCC--CCCCCCHHHHCCC
Q ss_conf             122--3333100010745
Q gi|255764481|r  179 VVH--DVIPYGILNGNPG  194 (271)
Q Consensus       179 V~k--dVpp~~~~~G~pa  194 (271)
                      |.|  .||+.+...||||
T Consensus       702 VMkGE~vP~~trW~GnPa  719 (719)
T TIGR02353       702 VMKGEEVPAHTRWEGNPA  719 (719)
T ss_pred             EECCCCCCCCCCCCCCCC
T ss_conf             503552888785888899


No 113
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.66  E-value=1.2e-07  Score=68.35  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=9.4

Q ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEE
Q ss_conf             889899565598899899889898668689
Q gi|255764481|r   23 GPNSLIGPFCCVGSEVEIGAGVELISHCVV   52 (271)
Q Consensus        23 g~~v~Igp~~~I~~~v~IG~~~~I~~~v~I   52 (271)
                      |++++|++.+.| ++..||++|+|++++.|
T Consensus         3 G~~~~Ig~~~~I-~~SvIG~nc~Ig~~~~i   31 (81)
T cd04652           3 GENTQVGEKTSI-KRSVIGANCKIGKRVKI   31 (81)
T ss_pred             CCCCEECCCCEE-ECCEECCCCEECCCCEE
T ss_conf             798899999989-67999799999999689


No 114
>PRK04928 consensus
Probab=98.64  E-value=1.1e-07  Score=68.61  Aligned_cols=13  Identities=31%  Similarity=0.123  Sum_probs=4.6

Q ss_pred             EECCCEEECCCCC
Q ss_conf             4047435013211
Q gi|255764481|r  167 IGKYAFIGGMTGV  179 (271)
Q Consensus       167 IG~~a~ig~gs~V  179 (271)
                      |++++-||.|++|
T Consensus       364 idk~v~Ig~g~~I  376 (405)
T PRK04928        364 IDKDVEIAPGTQI  376 (405)
T ss_pred             ECCCCEECCCCEE
T ss_conf             8899999999999


No 115
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.61  E-value=1.9e-07  Score=67.08  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=18.1

Q ss_pred             CCEECCCCEECCCCEECCCCEEEEEEECCCCCEEE
Q ss_conf             98998898986686891684686553114342232
Q gi|255764481|r   37 EVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG   71 (271)
Q Consensus        37 ~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig   71 (271)
                      +..|++||+|. ++.|. ++.||.+++|+++|+|.
T Consensus       308 ~SlI~~GciI~-g~~V~-nSVlg~~v~I~~ga~V~  340 (429)
T PRK02862        308 ESIISEGCILK-NCSIH-HSVLGVRSRIESDCVLE  340 (429)
T ss_pred             CCEECCCEEEE-CCEEE-CCEECCCCEECCCCEEE
T ss_conf             45975976983-88887-67888985898998996


No 116
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.60  E-value=9.5e-08  Score=68.95  Aligned_cols=30  Identities=27%  Similarity=0.404  Sum_probs=10.3

Q ss_pred             CCCCCEECCCEEECCCCEECCCCEECCCCEE
Q ss_conf             5799756551088898599889899565598
Q gi|255764481|r    4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCV   34 (271)
Q Consensus         4 i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I   34 (271)
                      |++++.|.+.+.|. ...||+||+||+.+.|
T Consensus         2 IG~~~~Ig~~~~I~-~SvIG~nc~Ig~~~~i   31 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKI   31 (81)
T ss_pred             CCCCCEECCCCEEE-CCEECCCCEECCCCEE
T ss_conf             87988999999896-7999799999999689


No 117
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.54  E-value=2.2e-07  Score=66.61  Aligned_cols=69  Identities=23%  Similarity=0.218  Sum_probs=41.3

Q ss_pred             CCCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEECC
Q ss_conf             5057997565510888985998898995655988998998898986686891684686553114342232102
Q gi|255764481|r    2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDT   74 (271)
Q Consensus         2 ~~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~   74 (271)
                      |.|+..+.|+.. .|. ...|+.+|.|+++|.| .++.|.+++.|+.++.|. ++.|++++.|++++.||.++
T Consensus        13 S~Ig~Gc~I~~~-~V~-~SVIg~~~~Ig~~a~I-~~svi~~~~~Ig~~~~l~-~~Ii~~~~~I~~g~~Ig~~~   81 (104)
T cd04651          13 SLVSEGCIISGG-TVE-NSVLFRGVRVGSGSVV-EDSVIMPNVGIGRNAVIR-RAIIDKNVVIPDGVVIGGDP   81 (104)
T ss_pred             CEECCCCEEECC-EEE-CCEECCCCEECCCCEE-ECCEEECCCEECCCCEEE-EEEECCCCEECCCCEECCCC
T ss_conf             998899799599-998-0897299799999899-600996556899999998-61999999999899999893


No 118
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.54  E-value=1.6e-07  Score=67.45  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEE
Q ss_conf             00123443223452455321486065234443365064
Q gi|255764481|r  130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRI  167 (271)
Q Consensus       130 ~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~I  167 (271)
                      .||++|.|+.++.+-|+.+|||++.||++++|.+.+--
T Consensus       121 tIg~~V~IGagAkILG~I~IGd~a~IGA~sVVlkdVP~  158 (194)
T COG1045         121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPP  158 (194)
T ss_pred             CCCCCEEECCCCEEECCEEECCCCEECCCCEECCCCCC
T ss_conf             31788598999889716688789788878668157899


No 119
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.52  E-value=2.3e-07  Score=66.51  Aligned_cols=63  Identities=14%  Similarity=-0.010  Sum_probs=50.4

Q ss_pred             CEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEEEE
Q ss_conf             75655108889859988989956559889989988989866868916846865531143422321
Q gi|255764481|r    8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGG   72 (271)
Q Consensus         8 ~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~   72 (271)
                      ..|-|.+.|--+|.|+++++|.|-++|.=|+-....+.|.  ..|...+.||++|.++-+|.|++
T Consensus         2 vRi~~~~~VRlGAyl~~Gt~vM~egfVN~nAgt~g~~Mie--grissgv~VG~~~diggGasi~G   64 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVE--GRISSGVIVGKGSDVGGGASIMG   64 (147)
T ss_pred             EEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCCEEE--EEEEECEEECCCCCCCCCCEEEE
T ss_conf             3744786687341887995986256798766306661687--67851569899833278617878


No 120
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.44  E-value=6.7e-07  Score=63.63  Aligned_cols=16  Identities=19%  Similarity=0.540  Sum_probs=6.1

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             4331001234432234
Q gi|255764481|r  126 AHDCKLGNGIVLSNNV  141 (271)
Q Consensus       126 ~Hd~~IG~~vii~n~~  141 (271)
                      +.+|.||++|.|.+..
T Consensus       381 dk~~~Ig~~~~I~~~~  396 (429)
T PRK02862        381 DKNARIGNNVTIVNKD  396 (429)
T ss_pred             CCCCEECCCCEECCCC
T ss_conf             7898999999897898


No 121
>PRK03282 consensus
Probab=98.42  E-value=1.3e-06  Score=61.84  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCC
Q ss_conf             00123443223452455321486065234443365064047435013211
Q gi|255764481|r  130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGV  179 (271)
Q Consensus       130 ~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V  179 (271)
                      .||.+|.++.++.+- ++.|.+++.||.++.|. .+-|++++.||.|+.|
T Consensus       331 vIg~~v~Ig~ga~I~-~SIIm~~~~Ig~~a~l~-~~Iidk~v~Ig~g~~I  378 (406)
T PRK03282        331 VLSPNVVVDSGAIVE-GSVLMPGVRIGRGAVVR-HAILDKNVVVPPGAMV  378 (406)
T ss_pred             EECCCCEECCCCEEE-CCEEECCCEECCCCEEE-CCEECCCCEECCCCEE
T ss_conf             978998999998997-08890968999999997-3198999999989899


No 122
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.41  E-value=1.4e-06  Score=61.72  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=14.4

Q ss_pred             CCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC
Q ss_conf             2455321486065234443365064047435013211223
Q gi|255764481|r  143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       143 l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd  182 (271)
                      |+..|+||++|.|- ++.|++.++||++|.| -+|.+-++
T Consensus       334 Ig~~v~Ig~ga~I~-nSII~~~~~Ig~~a~I-~~sIidk~  371 (409)
T PRK00844        334 LSPNVRVDSGAIVE-GSVLMDGVRIGRGAVV-RRAILDKN  371 (409)
T ss_pred             ECCCCEECCCCEEE-CCEEECCCEECCCCEE-EEEEECCC
T ss_conf             77998999998995-1899294999999999-80198999


No 123
>PRK03701 consensus
Probab=98.39  E-value=5.1e-07  Score=64.39  Aligned_cols=45  Identities=7%  Similarity=0.002  Sum_probs=21.1

Q ss_pred             CCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCH
Q ss_conf             52455321486065234443365064047435013211223--333100
Q gi|255764481|r  142 MIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGI  188 (271)
Q Consensus       142 ~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~  188 (271)
                      .|+-.|+|+++|.|- ++.|+|.++||++|.+ -.+.+.||  |||...
T Consensus       349 Vl~r~v~I~~gA~V~-nSIIm~~~~Ig~ga~l-~~~IiDk~v~I~~g~v  395 (431)
T PRK03701        349 VLFPRVRVNSFCNID-SAVLLPEVWVGRSCRL-RRCVIDRACVIPEGMV  395 (431)
T ss_pred             CCCCCCEECCCCEEE-CCEECCCCEECCCCEE-EEEEECCCCEECCCCE
T ss_conf             811888999998997-2698596989999999-8379899999997999


No 124
>KOG1460 consensus
Probab=98.34  E-value=8.8e-07  Score=62.90  Aligned_cols=57  Identities=28%  Similarity=0.390  Sum_probs=37.7

Q ss_pred             CCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             9756551088898599889899565598899899889898668689168468655311434223
Q gi|255764481|r    7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus         7 ~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      .+.|--..+|||+|++++.++|||++-|+++|++|++++|.       .+.|=++|.|..+|++
T Consensus       282 ~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~-------~sIIl~d~ei~enavV  338 (407)
T KOG1460         282 QAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-------ESIILDDAEIEENAVV  338 (407)
T ss_pred             CCEEEEEEEECCCCEECCCCCCCCCCEECCCCEECCCCEEE-------EEEECCCCEEECCCEE
T ss_conf             85487424776754047766208971446882546882665-------4560267376216367


No 125
>PRK01884 consensus
Probab=98.31  E-value=1.4e-06  Score=61.68  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             CCCCCCCCCCC----CCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC--CCCCCH
Q ss_conf             31001234432----23452455321486065234443365064047435013211223--333100
Q gi|255764481|r  128 DCKLGNGIVLS----NNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD--VIPYGI  188 (271)
Q Consensus       128 d~~IG~~vii~----n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd--Vpp~~~  188 (271)
                      ++.|+++|++.    .++.|+..|+|+++|.|- +|.|+|.++||++|.+- .+.+-||  |||...
T Consensus       329 nSlIa~GcvI~~g~V~nSVL~r~v~I~~gA~V~-nSIIm~~~~IG~ga~l~-~~IiDk~v~I~~g~~  393 (435)
T PRK01884        329 NSLIAGGCVITDASISNSVLFDRIKVDEFSKID-HCVVLPQVKIGKNCVLK-RCIIDRHCVIPDGMQ  393 (435)
T ss_pred             CCEECCCEEEECCEEECCEEECCCEECCCCEEE-ECEEECCCEECCCCEEE-EEEECCCCEECCCCE
T ss_conf             899819979939899719820896999999998-28880869899999996-269899999997999


No 126
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.31  E-value=2.1e-06  Score=60.56  Aligned_cols=57  Identities=21%  Similarity=0.127  Sum_probs=22.6

Q ss_pred             ECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             6551088898599889899565598899899889898668689168468655311434223
Q gi|255764481|r   10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus        10 IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      +-+.|.|. +..|+++|.|. .+.| .+..||++|+|++++.|. ++.|.+++.|+++|.|
T Consensus         4 ~~~~~~v~-~S~Ig~Gc~I~-~~~V-~~SVIg~~~~Ig~~a~I~-~svi~~~~~Ig~~~~l   60 (104)
T cd04651           4 IGRRGEVK-NSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVVE-DSVIMPNVGIGRNAVI   60 (104)
T ss_pred             ECCCCEEE-ECEECCCCEEE-CCEE-ECCEECCCCEECCCCEEE-CCEEECCCEECCCCEE
T ss_conf             88994898-49988997995-9999-808972997999998996-0099655689999999


No 127
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.29  E-value=1.1e-06  Score=62.28  Aligned_cols=40  Identities=8%  Similarity=0.026  Sum_probs=18.7

Q ss_pred             CCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC
Q ss_conf             452455321486065234443365064047435013211223
Q gi|255764481|r  141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       141 ~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd  182 (271)
                      +.|+..|+|+++|.|- ++.|+|.++||++|.+ -.+++-||
T Consensus       348 SVI~r~v~Ig~gA~V~-nSIIm~~~~IG~ga~l-~naIiDk~  387 (431)
T PRK00725        348 SVLFTRVRVNSFSNID-SAVLLPEVWVGRSCRL-RRCVIDRA  387 (431)
T ss_pred             CCCCCCCEECCCCEEE-EEEECCCCEECCCCEE-EEEEECCC
T ss_conf             9825998999998996-1398898988999999-71398999


No 128
>PRK04928 consensus
Probab=98.26  E-value=4.9e-06  Score=58.21  Aligned_cols=12  Identities=17%  Similarity=-0.006  Sum_probs=4.3

Q ss_pred             CCCEEEECCCEE
Q ss_conf             365064047435
Q gi|255764481|r  162 HQFTRIGKYAFI  173 (271)
Q Consensus       162 ~~~v~IG~~a~i  173 (271)
                      -.+|+||+++.|
T Consensus       365 dk~v~Ig~g~~I  376 (405)
T PRK04928        365 DKDVEIAPGTQI  376 (405)
T ss_pred             CCCCEECCCCEE
T ss_conf             899999999999


No 129
>KOG1322 consensus
Probab=98.26  E-value=1.4e-06  Score=61.64  Aligned_cols=46  Identities=37%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             CCCCCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Q ss_conf             0579975655108889859988989956559889989988989866
Q gi|255764481|r    3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELIS   48 (271)
Q Consensus         3 ~i~~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~   48 (271)
                      |.-..+.|.-...+++.+.+|++|.|||+++||++++|++++.|..
T Consensus       254 r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~  299 (371)
T KOG1322         254 RLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQD  299 (371)
T ss_pred             CCCCCCCCCCCEEECCCCCCCCCCEECCCCEECCCCEECCCEEEEE
T ss_conf             5469755124376214001388637888736778728627628874


No 130
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.25  E-value=4.5e-06  Score=58.47  Aligned_cols=140  Identities=20%  Similarity=0.296  Sum_probs=72.1

Q ss_pred             CCCEECCCCEECCC---CEECCCCEECCCCEEC---CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89899565598899---8998898986686891---68468655311434223210233312222223322222221224
Q gi|255764481|r   24 PNSLIGPFCCVGSE---VEIGAGVELISHCVVA---GKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREG   97 (271)
Q Consensus        24 ~~v~Igp~~~I~~~---v~IG~~~~I~~~v~I~---g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~   97 (271)
                      .+..++.+..+...   ..+...+.+.+.....   .+..+|++|.+..++.+-          ....+.||+++.+..+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~----------~~~~i~ig~~~~i~~~   99 (190)
T COG0110          30 KPVKLGRYAEILGRLVGIKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL----------VGEGITIGDNVVVGPN   99 (190)
T ss_pred             CCCEECCCEEEEECCCCCCCCCEEEECCCCEEEECCCCEEECCEEEEECCCEEE----------ECCCCEECCCCEECCC
T ss_conf             884013432787401443256305861350244143210646346770254498----------3488588998589599


Q ss_pred             CCCCCCCCCCCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECC
Q ss_conf             43211112222221-22332000016655433100123443223452455321486065234443365064047435013
Q gi|255764481|r   98 VTINRGTVEYGGKT-IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM  176 (271)
Q Consensus        98 v~I~~gt~~~~~~T-~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~g  176 (271)
                      |++...+......+ ..+.       .....++.||++|.++.++.+...|+|||+++||+++++..  -+-.++.+++.
T Consensus       100 v~i~~~~h~~~~~~~~~~~-------~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk--dvp~~~iv~G~  170 (190)
T COG0110         100 VTIYTNSHPGDFVTANIGA-------LVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK--DVPPYGIVAGN  170 (190)
T ss_pred             EEECCCCCCCCCCCCCCCC-------CCCCCCCEECCCCEECCCCEECCCEEECCCEEEECCEEEEC--CCCCCEEEECC
T ss_conf             4982687656522000143-------23578978899858778978979859899819978858957--77998289799


Q ss_pred             -CCCCCC
Q ss_conf             -211223
Q gi|255764481|r  177 -TGVVHD  182 (271)
Q Consensus       177 -s~V~kd  182 (271)
                       +.|.+.
T Consensus       171 Pa~vir~  177 (190)
T COG0110         171 PARVIRK  177 (190)
T ss_pred             CCEEEEE
T ss_conf             9889874


No 131
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.23  E-value=1.9e-06  Score=60.82  Aligned_cols=67  Identities=21%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCC--------CCCEEEECCCEEECCCCCC
Q ss_conf             332000016655433100123443223452455321486065234443--------3650640474350132112
Q gi|255764481|r  114 GDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAV--------HQFTRIGKYAFIGGMTGVV  180 (271)
Q Consensus       114 G~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v--------~~~v~IG~~a~ig~gs~V~  180 (271)
                      |++..+|..+.|-=+..++..+.+--++.+++.++||+++.||+++.|        .+.+.||++|++||+|.+.
T Consensus       124 ~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~v  198 (271)
T COG2171         124 AKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV  198 (271)
T ss_pred             CCCCEECCCCEEEECCCCCCCEEEEEEEEEECCEEECCCCCCCCCCEEEEEECCCCCCCEEECCCCEECCCCCEE
T ss_conf             799387555668777602752589615655131797998452786367677348887886987761862453348


No 132
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; InterPro: IPR005664   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants .    2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (also known as tetrahydrodipicolinate N-succinyltransferase or DapD) is part of the succinyl route of of lysine/DAP biosynthesis. The DapD protein is a homotrimer is a trimeric enzyme with each monomer composed of three domain: an N-terminal helical domain, a distinctive left-handed parallel beta-helix (LBH) domain, and a predominantly beta C-terminal domain , . The LBH structure is encoded by an imperfect tandem-repeated hexapeptide sequence. Each trimer contains three independent active sites, always occuring at the boundary of two subunits, and formed by residues from one N-terminal domain, one C-terminal domain and two adjacent LBH domains.; GO: 0016757 transferase activity transferring glycosyl groups, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=98.21  E-value=1.6e-06  Score=61.33  Aligned_cols=114  Identities=19%  Similarity=0.253  Sum_probs=78.6

Q ss_pred             CCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf             98986686891684686553114342232102333122222233222222212244321111222222122332000016
Q gi|255764481|r   43 GVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLAN  122 (271)
Q Consensus        43 ~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~  122 (271)
                      +-+.=|.++++..+.|-+|..+.|                 +++.||..                     |....++...
T Consensus       103 g~R~VPgA~vR~G~fiAkNvVlMP-----------------SyvNIGAY---------------------vDEGtMvDTW  144 (275)
T TIGR00965       103 GFRKVPGAIVRRGTFIAKNVVLMP-----------------SYVNIGAY---------------------VDEGTMVDTW  144 (275)
T ss_pred             CCCCCCHHHEECCCEEEEEEEECC-----------------CEEECCCE---------------------EECCCEECCH
T ss_conf             665487436005735775237755-----------------52101367---------------------5168601001


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC--------CCEECCCEEECCCCCCCCCEEEECCCEEECCCCCC--------------
Q ss_conf             65543310012344322345245--------53214860652344433650640474350132112--------------
Q gi|255764481|r  123 SHVAHDCKLGNGIVLSNNVMIAG--------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV--------------  180 (271)
Q Consensus       123 ~hI~Hd~~IG~~vii~n~~~l~G--------~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~--------------  180 (271)
                      ++||--.+||.||.|+-++.++|        .+.|+||||||+.+=|..++-+.+++.|.+|.-+-              
T Consensus       145 ATvGSCAQIGKNvHlSGG~GIGGVLEPLQA~P~IIEDNCFiGARSEi~EGVIVEEGSVISMGVfIG~STkI~~R~TGEI~  224 (275)
T TIGR00965       145 ATVGSCAQIGKNVHLSGGVGIGGVLEPLQAKPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIVDRDTGEII  224 (275)
T ss_pred             HHHCCHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCEECCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCEEE
T ss_conf             22300322066257517833165246335787588247600461135620797168588840685560168853667176


Q ss_pred             -CCCCCCCH-HHHC-CC
Q ss_conf             -23333100-0107-45
Q gi|255764481|r  181 -HDVIPYGI-LNGN-PG  194 (271)
Q Consensus       181 -kdVpp~~~-~~G~-pa  194 (271)
                       .-||+|++ +.|+ |.
T Consensus       225 ~GRvPA~SVVVsG~lPs  241 (275)
T TIGR00965       225 YGRVPAGSVVVSGILPS  241 (275)
T ss_pred             ECCCCCEEEEECCCCCC
T ss_conf             55135602797177887


No 133
>KOG1462 consensus
Probab=98.20  E-value=1.6e-06  Score=61.35  Aligned_cols=16  Identities=31%  Similarity=0.254  Sum_probs=6.7

Q ss_pred             EEEECCCEEECCCCCC
Q ss_conf             0640474350132112
Q gi|255764481|r  165 TRIGKYAFIGGMTGVV  180 (271)
Q Consensus       165 v~IG~~a~ig~gs~V~  180 (271)
                      +.||.+|-||.+|.++
T Consensus       386 sIIg~gA~Ig~gs~L~  401 (433)
T KOG1462         386 SIIGMGAQIGSGSKLK  401 (433)
T ss_pred             CEECCCCEECCCCEEE
T ss_conf             2662665654797033


No 134
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.20  E-value=3.5e-06  Score=59.12  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEEC
Q ss_conf             0012344322345245532148606523444336506404743501
Q gi|255764481|r  130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG  175 (271)
Q Consensus       130 ~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~  175 (271)
                      .||++|+|+.++.+-|+++||+++.||++++|...+  -.++.+.+
T Consensus       195 ~i~~~v~igaga~iLG~i~iG~~a~igA~svVl~dv--p~~~tv~G  238 (273)
T PRK11132        195 KIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPV--PPHTTAAG  238 (273)
T ss_pred             CCCCCEEECCCCEEECCEEECCCCEECCCCEECCCC--CCCCEEEC
T ss_conf             048884875488897185889998886786686437--99987966


No 135
>KOG1322 consensus
Probab=98.05  E-value=7.9e-06  Score=56.93  Aligned_cols=12  Identities=17%  Similarity=0.670  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             310012344322
Q gi|255764481|r  128 DCKLGNGIVLSN  139 (271)
Q Consensus       128 d~~IG~~vii~n  139 (271)
                      +|+||++|++.|
T Consensus       334 ~a~lG~nV~V~d  345 (371)
T KOG1322         334 NAVLGKNVIVAD  345 (371)
T ss_pred             CCEECCCEEEEC
T ss_conf             537536259942


No 136
>PRK01884 consensus
Probab=98.04  E-value=1.5e-05  Score=55.27  Aligned_cols=52  Identities=17%  Similarity=0.093  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC
Q ss_conf             100123443223452455321486065234443365064047435013211223
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd  182 (271)
                      ++|+.+|.+..++.+-. +.|.+++.||.++.+. .+-|++++.|+.|.+|--|
T Consensus       346 SVL~r~v~I~~gA~V~n-SIIm~~~~IG~ga~l~-~~IiDk~v~I~~g~~IG~~  397 (435)
T PRK01884        346 SVLFDRIKVDEFSKIDH-CVVLPQVKIGKNCVLK-RCIIDRHCVIPDGMQIGVD  397 (435)
T ss_pred             CEEECCCEECCCCEEEE-CEEECCCEECCCCEEE-EEEECCCCEECCCCEECCC
T ss_conf             98208969999999982-8880869899999996-2698999999979999858


No 137
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.90  E-value=4.3e-05  Score=52.35  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=17.1

Q ss_pred             CEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCC
Q ss_conf             321486065234443365064047435013211223
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD  182 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kd  182 (271)
                      +.|||+|+||+++.+  .+.+|+.|.|.+|-.++.+
T Consensus        74 i~Ig~ncliGAnsgi--Gi~lGd~cvv~aGlyi~~g  107 (147)
T cd04649          74 ISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAG  107 (147)
T ss_pred             EEECCCEEECCCCCC--CEEECCCCEEECCEEECCC
T ss_conf             698875076146545--8486898688244598399


No 138
>KOG1462 consensus
Probab=97.85  E-value=3.2e-05  Score=53.13  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCC
Q ss_conf             2000016655433100123443223452455321486065234443365064047435013211
Q gi|255764481|r  116 NNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGV  179 (271)
Q Consensus       116 ~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V  179 (271)
                      ++.+|.+++|+|+|.|. +            +.|+++|.||.++.+       +.|.||.+-+|
T Consensus       368 nSilm~nV~vg~G~~Ie-n------------sIIg~gA~Ig~gs~L-------~nC~Ig~~yvV  411 (433)
T KOG1462         368 NSILMDNVVVGDGVNIE-N------------SIIGMGAQIGSGSKL-------KNCIIGPGYVV  411 (433)
T ss_pred             EEEEECCCEECCCCCEE-C------------CEECCCCEECCCCEE-------EEEEECCCCEE
T ss_conf             11766583755884020-4------------266266565479703-------33485598277


No 139
>KOG4750 consensus
Probab=97.84  E-value=1.6e-05  Score=54.99  Aligned_cols=35  Identities=29%  Similarity=0.547  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCC
Q ss_conf             00123443223452455321486065234443365
Q gi|255764481|r  130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF  164 (271)
Q Consensus       130 ~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~  164 (271)
                      .|||+|.|+.++.+-|+++||.++.||+++.|...
T Consensus       202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD  236 (269)
T KOG4750         202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD  236 (269)
T ss_pred             CCCCCEEECCCCEEECCEEECCCCEEECCCEEEEC
T ss_conf             55677087554178578167788677305069721


No 140
>PRK03701 consensus
Probab=97.80  E-value=4.9e-05  Score=51.98  Aligned_cols=55  Identities=11%  Similarity=0.010  Sum_probs=28.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCC
Q ss_conf             100123443223452455321486065234443365064047435013211223333
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIP  185 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp  185 (271)
                      ++|+.+|.++.++.+-. +.|.+++.||.++.+. .+-|+++|.|+.|.+|-.|...
T Consensus       348 SVl~r~v~I~~gA~V~n-SIIm~~~~Ig~ga~l~-~~IiDk~v~I~~g~vIg~~~~~  402 (431)
T PRK03701        348 SVLFPRVRVNSFCNIDS-AVLLPEVWVGRSCRLR-RCVIDRACVIPEGMVIGENAEE  402 (431)
T ss_pred             CCCCCCCEECCCCEEEC-CEECCCCEECCCCEEE-EEEECCCCEECCCCEECCCHHH
T ss_conf             98118889999989972-6985969899999998-3798999999979998968367


No 141
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.76  E-value=5.6e-05  Score=51.62  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=36.5

Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCC
Q ss_conf             22332000016655433100123443223452455321486065234443365064047435013211223333
Q gi|255764481|r  112 IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIP  185 (271)
Q Consensus       112 ~IG~~~~i~~~~hI~Hd~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp  185 (271)
                      .|++.|.|.. ++|. +++|+.+|.++.++.+-. +.|.+++.||.++.+. ++-|++++.|+.|++|..|..+
T Consensus       333 li~~GcvI~G-~~Ve-nSVI~r~v~Ig~gA~V~n-SIIm~~~~IG~ga~l~-naIiDk~v~I~~G~~Ig~~~~~  402 (431)
T PRK00725        333 LVSGGCIISG-SVVV-QSVLFTRVRVNSFSNIDS-AVLLPEVWVGRSCRLR-RCVIDRACVIPEGMVIGENAEE  402 (431)
T ss_pred             EEECCEEEEC-CEEE-ECCCCCCCEECCCCEEEE-EEECCCCEECCCCEEE-EEEECCCCEECCCCEECCCHHH
T ss_conf             9839989969-9998-298259989999989961-3988989889999997-1398999898989998968578


No 142
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908    Synonym: dTDP-D-glucose synthase     This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.  dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose     The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=97.72  E-value=6.3e-05  Score=51.30  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CEECCCCEECCCCEECCCCEECCCCEEEEEEECCCCC-EEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5988998998898986686891684686553114342-232102333122222233222222212
Q gi|255764481|r   32 CCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA-VLGGDTQSKYHNFVGTELLVGKKCVIR   95 (271)
Q Consensus        32 ~~I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I~~~a-~Ig~~~qd~~~~g~~~~v~IG~~~~Ir   95 (271)
                      +-|.+-|.||++++|.-+++|+|++.||+||.|. +| .||.            ++.||++++|+
T Consensus       255 s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I~-nsGyiGP------------YtSig~~~~I~  306 (361)
T TIGR01208       255 SKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCIIE-NSGYIGP------------YTSIGEGVVIR  306 (361)
T ss_pred             CEEEEEEEECCCCEECCCCEEECCEEECCCCEEE-CCCCCCC------------EEEECCCEEEE
T ss_conf             5788407908978842377787060877952782-6861177------------07725753874


No 143
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908    Synonym: dTDP-D-glucose synthase     This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.  dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose     The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=97.71  E-value=4.9e-05  Score=52.00  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=14.2

Q ss_pred             EEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Q ss_conf             0888985998898995655988998998898986
Q gi|255764481|r   14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI   47 (271)
Q Consensus        14 A~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~   47 (271)
                      +-|...++|+++.+|.-+++|.+-|.||+||.|.
T Consensus       255 s~i~GRV~v~~gakid~ns~i~GPa~IG~d~~I~  288 (361)
T TIGR01208       255 SKIEGRVEVGEGAKIDVNSVIRGPAVIGEDCIIE  288 (361)
T ss_pred             CEEEEEEEECCCCEECCCCEEECCEEECCCCEEE
T ss_conf             5788407908978842377787060877952782


No 144
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831    This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=97.58  E-value=0.00011  Score=49.70  Aligned_cols=12  Identities=25%  Similarity=0.564  Sum_probs=7.2

Q ss_pred             CCEECCCEEECC
Q ss_conf             975655108889
Q gi|255764481|r    7 NPIIHPLALVEE   18 (271)
Q Consensus         7 ~~~IhpsA~I~~   18 (271)
                      +.+.-|+.++++
T Consensus       315 ~~~~pPa~f~~~  326 (421)
T TIGR02091       315 NEFLPPAKFVDS  326 (421)
T ss_pred             CCCCCCCEEECC
T ss_conf             888888604557


No 145
>KOG3121 consensus
Probab=97.56  E-value=0.00011  Score=49.87  Aligned_cols=145  Identities=16%  Similarity=0.203  Sum_probs=79.2

Q ss_pred             CCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             86891684686553114342232102333122222233222222212244321111222222122332000016655433
Q gi|255764481|r   49 HCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD  128 (271)
Q Consensus        49 ~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T~IG~~~~i~~~~hI~Hd  128 (271)
                      +..|.|.+.+-++      +.|.         |+-..+.||..|++...+.|.+-- +      +=+.---|-.+|||..
T Consensus        33 NI~lnGKtIv~~g------~iIR---------GDLAnVr~GryCV~ksrsvIRPp~-K------~FSKg~affp~hiGdh   90 (184)
T KOG3121          33 NILLNGKTIVEEG------VIIR---------GDLANVRIGRYCVLKSRSVIRPPM-K------IFSKGPAFFPVHIGDH   90 (184)
T ss_pred             EEEECCCEEEEEC------CEEE---------CCCCCCEECCEEEECCCCCCCCCH-H------HHCCCCEEEEEEECCE
T ss_conf             2798372798608------5895---------120102473368964665437706-7------7567862456652456


Q ss_pred             CCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCC
Q ss_conf             10012344322345245532148606523444336506404743501321122333310001074532334420144428
Q gi|255764481|r  129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAG  208 (271)
Q Consensus       129 ~~IG~~vii~n~~~l~G~v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g  208 (271)
                      +.|++.|++ |.++++..|.+|.+++||-.+++..-++|-+++.          +||..++-  |-...+-|  +-.--|
T Consensus        91 VFieE~cVV-nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tV----------lPpet~vp--py~~~~g~--p~~~~G  155 (184)
T KOG3121          91 VFIEEECVV-NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTV----------LPPETLVP--PYSTIGGN--PAQVVG  155 (184)
T ss_pred             EEEECCEEE-EHHHHEEEEEECCCEEECCCEEHHHHEECCCCCC----------CCCCCCCC--CCEEECCC--CCEEEC
T ss_conf             887044186-2666120368546406737508334104158952----------58201369--71677388--723531


Q ss_pred             CCHHHH-HHHHHHHHHHHHCCCC
Q ss_conf             889999-9999999999727998
Q gi|255764481|r  209 FSRDTI-HLIRAVYKQIFQQGDS  230 (271)
Q Consensus       209 ~s~e~i-~~l~~ayr~lfr~~~~  230 (271)
                      +.++-- ...-++-+..|..=.+
T Consensus       156 ~~P~ctq~lMi~~tksyY~~Fvp  178 (184)
T KOG3121         156 TEPRCTQNLMIEATKSYYDNFVP  178 (184)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             57302689999999999983375


No 146
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.42  E-value=0.00075  Score=44.55  Aligned_cols=12  Identities=8%  Similarity=0.183  Sum_probs=4.5

Q ss_pred             CCEECCCCEECC
Q ss_conf             989988989866
Q gi|255764481|r   37 EVEIGAGVELIS   48 (271)
Q Consensus        37 ~v~IG~~~~I~~   48 (271)
                      +..+++||.|..
T Consensus       296 nSLv~~GciI~G  307 (393)
T COG0448         296 NSLVAGGCIISG  307 (393)
T ss_pred             EEEEECCEEEEE
T ss_conf             226607718963


No 147
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.36  E-value=0.00033  Score=46.76  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=21.6

Q ss_pred             CCCEECCCCEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8989866868916846865531143422321023331222222332222222122
Q gi|255764481|r   42 AGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE   96 (271)
Q Consensus        42 ~~~~I~~~v~I~g~t~IG~~~~I~~~a~Ig~~~qd~~~~g~~~~v~IG~~~~Ire   96 (271)
                      .+|+|+.+|.+.+|+..+.+..|+.|++|++.      --....+.||+++.|.+
T Consensus        55 ~diridmw~kv~gNV~ve~dayiGE~~sI~gk------l~v~gdLdig~dV~Ieg  103 (277)
T COG4801          55 KDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK------LTVIGDLDIGADVIIEG  103 (277)
T ss_pred             CCEEEEEEEEEECCEEECCCEEEECCCEEEEE------EEEECCCCCCCCEEEEC
T ss_conf             11366215675231898474077033024016------99953323565168756


No 148
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.23  E-value=0.0014  Score=42.90  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=10.1

Q ss_pred             CEECCCEEECCCCCCCCCEEEE
Q ss_conf             3214860652344433650640
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIG  168 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG  168 (271)
                      .++++++++|..+.++.+++-+
T Consensus       167 i~vg~da~Vg~~c~l~Gnvka~  188 (277)
T COG4801         167 IKVGDDAFVGTVCRLEGNVKAG  188 (277)
T ss_pred             EEECCCCEECCEEEEECCEEEE
T ss_conf             8706884613205997450321


No 149
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=96.89  E-value=0.0017  Score=42.42  Aligned_cols=33  Identities=9%  Similarity=0.189  Sum_probs=15.3

Q ss_pred             CEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC
Q ss_conf             32148606523444336506404743501321122
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH  181 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k  181 (271)
                      +.||++|.+|+++++  ++.+|+.|.|.+|-.||.
T Consensus       251 isiG~~cLlGANsg~--GI~LGD~C~veaGlyvta  283 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITA  283 (341)
T ss_pred             EEECCCCCCCCCCCC--CCCCCCCCEEECCEEEEC
T ss_conf             888732201444555--742489847812449927


No 150
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=96.82  E-value=0.0021  Score=41.74  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=9.1

Q ss_pred             CCCEECCCCEECCCCEECCCCEE
Q ss_conf             99899889898668689168468
Q gi|255764481|r   36 SEVEIGAGVELISHCVVAGKTKI   58 (271)
Q Consensus        36 ~~v~IG~~~~I~~~v~I~g~t~I   58 (271)
                      .+|+|.|..++.=++.+...|++
T Consensus       152 ~gVRIada~rVRLGAyl~~GTtV  174 (319)
T TIGR03535       152 TGVRIGDADRVRLGAHLAEGTTV  174 (319)
T ss_pred             CCCEECCCCCEEEEEEECCCCEE
T ss_conf             88477045525540076598077


No 151
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=96.82  E-value=0.0031  Score=40.72  Aligned_cols=86  Identities=22%  Similarity=0.249  Sum_probs=37.6

Q ss_pred             ECCCCEECCCCEECCCCEECCCCEEEEEEEC-CCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899899889898668689168468655311-43422321023331222-222332222222122443211112222221
Q gi|255764481|r   34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKV-FPMAVLGGDTQSKYHNF-VGTELLVGKKCVIREGVTINRGTVEYGGKT  111 (271)
Q Consensus        34 I~~~v~IG~~~~I~~~v~I~g~t~IG~~~~I-~~~a~Ig~~~qd~~~~g-~~~~v~IG~~~~Ire~v~I~~gt~~~~~~T  111 (271)
                      +-.+|+|.|-.++.=++.+...|++..--.+ |+--++|..-    -.| ....|++|+++-++-+++|- ||..+++..
T Consensus       175 vP~gvRIad~~rVRLGA~L~~GTtvmhegfvnfNAGTlG~~m----vEGRiS~GVvVg~gsDiGGgaSim-GtLSGGg~~  249 (341)
T TIGR03536       175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSM----VEGRISAGVMVGKGSDLGGGCSTM-GTLSGGGNI  249 (341)
T ss_pred             CCCCCEECCCCCEEEEEEECCCEEEECCCEEECCCCCCCCCE----EEEEEECCEEECCCCCCCCCEEEE-EEECCCCCE
T ss_conf             678837615663443007758817702214750477766424----530440346966787667750247-763589823


Q ss_pred             --CCCCCCHHCCCCC
Q ss_conf             --2233200001665
Q gi|255764481|r  112 --IVGDNNFFLANSH  124 (271)
Q Consensus       112 --~IG~~~~i~~~~h  124 (271)
                        .||.+|++++++-
T Consensus       250 ~isiG~~cLlGANsg  264 (341)
T TIGR03536       250 VISVGEGCLLGANAG  264 (341)
T ss_pred             EEEECCCCCCCCCCC
T ss_conf             688873220144455


No 152
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=96.67  E-value=0.0049  Score=39.49  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=18.1

Q ss_pred             CEECCCEEECCCCCCCCCEEEECCCEEECCCCCCC
Q ss_conf             32148606523444336506404743501321122
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH  181 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG~~a~ig~gs~V~k  181 (271)
                      +.||++|.+|+++++  ++.+|+.|.|-+|-.||.
T Consensus       226 isiG~~cLlGANsGi--GI~LGD~C~VeaGlyita  258 (319)
T TIGR03535       226 ISIGERCLLGANSGI--GISLGDDCVVEAGLYVTA  258 (319)
T ss_pred             EEECCCCEECCCCCC--CCCCCCCCEEECCEEECC
T ss_conf             788653200454555--743589717811228817


No 153
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832    This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=96.28  E-value=0.0039  Score=40.07  Aligned_cols=10  Identities=10%  Similarity=0.199  Sum_probs=3.1

Q ss_pred             EEECCCCCEE
Q ss_conf             5311434223
Q gi|255764481|r   61 FTKVFPMAVL   70 (271)
Q Consensus        61 ~~~I~~~a~I   70 (271)
                      ||.|++.|.|
T Consensus       335 n~iimq~~~I  344 (383)
T TIGR02092       335 NSIIMQRTVI  344 (383)
T ss_pred             EEEECCCCEE
T ss_conf             5477588777


No 154
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832    This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=94.97  E-value=0.067  Score=32.36  Aligned_cols=15  Identities=7%  Similarity=0.324  Sum_probs=5.5

Q ss_pred             CHHCCCCCCCCCCCC
Q ss_conf             000016655433100
Q gi|255764481|r  117 NFFLANSHVAHDCKL  131 (271)
Q Consensus       117 ~~i~~~~hI~Hd~~I  131 (271)
                      |.||..++|+.||.+
T Consensus       336 ~iimq~~~Ig~ga~L  350 (383)
T TIGR02092       336 SIIMQRTVIGEGAHL  350 (383)
T ss_pred             EEECCCCEECCCCEE
T ss_conf             477588777878656


No 155
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=74.81  E-value=5.2  Score=20.56  Aligned_cols=48  Identities=17%  Similarity=0.172  Sum_probs=24.7

Q ss_pred             CCCEECCCEEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Q ss_conf             9975655108889859988989956559889989988989866868916
Q gi|255764481|r    6 NNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAG   54 (271)
Q Consensus         6 ~~~~IhpsA~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~v~I~g   54 (271)
                      ..+.+||+++|. +++|...+.++..+..-+|+.|+.+..|+++++|.|
T Consensus       324 ~~~~~~~a~~v~-ns~i~~~l~~~~~sl~iens~i~~~w~igs~~IltG  371 (974)
T PRK13412        324 RKVKPNPAMFVQ-NAVLSGGLDAENATLWIENSHIGSHWKIASRSIITG  371 (974)
T ss_pred             CCCCCCCCEEEE-CCEECCCCCCCCCEEEEECCCCCCCEEECCCCEEEC
T ss_conf             047878745888-366437503578708997533155638657846715


No 156
>pfam03961 DUF342 Protein of unknown function (DUF342). This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.46  E-value=7.3  Score=19.61  Aligned_cols=27  Identities=11%  Similarity=0.130  Sum_probs=14.1

Q ss_pred             CEECCCCEECCCCEEEEEEECCCCCEE
Q ss_conf             898668689168468655311434223
Q gi|255764481|r   44 VELISHCVVAGKTKIGDFTKVFPMAVL   70 (271)
Q Consensus        44 ~~I~~~v~I~g~t~IG~~~~I~~~a~I   70 (271)
                      ..+.+.-.|.+++.+..++.-|.++++
T Consensus       175 i~V~~vl~v~gdVd~~TGNI~F~G~V~  201 (450)
T pfam03961       175 ISVDDVLEIKGDVDLSTGNIDFKGSVI  201 (450)
T ss_pred             EEEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf             999998997687787734467777799


No 157
>pfam10302 DUF2407 Putative membrane protein (DUF2407). This is a family of proteins found in fungi. The function is not known. There is a characteristic GFDRL sequence motif.
Probab=71.65  E-value=8.3  Score=19.27  Aligned_cols=38  Identities=21%  Similarity=0.407  Sum_probs=29.4

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
Q ss_conf             444288899999999999999727-----99899999999964
Q gi|255764481|r  204 MRRAGFSRDTIHLIRAVYKQIFQQ-----GDSIYKNAGAIREQ  241 (271)
Q Consensus       204 lkR~g~s~e~i~~l~~ayr~lfr~-----~~~l~e~l~~l~~~  241 (271)
                      |.-.|||++++..|+.-|+.+|-.     .++-.+.+.+||+.
T Consensus       125 LlsaGFs~~EV~~LR~QF~ai~~~~~tpd~~~s~~~lR~LEd~  167 (252)
T pfam10302       125 LLSAGFSPAEVSLLRSQFRAIYGSSDTPDTMPSPADLRQLEER  167 (252)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9875899999999999999871566687668888999999999


No 158
>pfam00427 PBS_linker_poly Phycobilisome Linker polypeptide.
Probab=70.47  E-value=9.1  Score=19.04  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=34.6

Q ss_pred             CCCCHHHH-HHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHCC
Q ss_conf             28889999-9999999999727-9989999999996425898-9999999986158
Q gi|255764481|r  207 AGFSRDTI-HLIRAVYKQIFQQ-GDSIYKNAGAIREQNVSCP-EVSDIINFIFADR  259 (271)
Q Consensus       207 ~g~s~e~i-~~l~~ayr~lfr~-~~~l~e~l~~l~~~~~~~~-~v~~~~~Fi~~s~  259 (271)
                      ...+.+++ ..|+.+||.+|-. ...-.|++..++.++.+-. .|++|+.-+.+|.
T Consensus         3 ~~~s~~~~~~vI~AaYrQVfgn~~~~~~eR~~~lES~lrng~IsVreFVr~la~S~   58 (131)
T pfam00427         3 PNSSEEELEEVIRAAYRQVFGNDHVMESERLTSLESQLRNGEISVREFVRGLAKSE   58 (131)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf             99899999999999999997576402312023699998869982999999998269


No 159
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=63.44  E-value=13  Score=18.17  Aligned_cols=38  Identities=16%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf             42888999999999999997279989999999996425
Q gi|255764481|r  206 RAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNV  243 (271)
Q Consensus       206 R~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~  243 (271)
                      +|-|+++++..|+....++...|.+++.+-+.|.+...
T Consensus        36 ~R~Ys~~di~~l~~Ik~Ll~~~G~ti~~~k~~L~~~~~   73 (99)
T cd04765          36 RRYYRPKDVELLLLIKHLLYEKGYTIEGAKQALKEDGA   73 (99)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             85068999999999999999879879999999983886


No 160
>pfam07637 PSD5 Protein of unknown function (DUF1595). A family of proteins in Rhodopirellula baltica, associated with pfam07635, pfam07626, pfam07631, pfam07627, and pfam07624.
Probab=63.25  E-value=13  Score=18.14  Aligned_cols=42  Identities=12%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             428889999999999999972799899999999964258989
Q gi|255764481|r  206 RAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPE  247 (271)
Q Consensus       206 R~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~  247 (271)
                      |+-.+.+++..+.+.|+.....+.+..+++.........+|.
T Consensus        16 RRp~t~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP~   57 (64)
T pfam07637        16 RRPLTDAELDRLLALYDAAREAGKDFEEALKEALAAILCSPS   57 (64)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf             689999999999999999987499999999999999985986


No 161
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=58.26  E-value=8.2  Score=19.32  Aligned_cols=61  Identities=8%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf             20144428-8899999999999999727998---------99999999964-25898999999998615888
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIFQQGDS---------IYKNAGAIREQ-NVSCPEVSDIINFIFADRKR  261 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lfr~~~~---------l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~rR  261 (271)
                      .+|||-|| |..---..|..|+|.|-.--++         +.+...++.-+ ..-+|+.+.+-.|+..++++
T Consensus       260 ~vG~KsRgvYEaPg~tiL~~AHr~LE~~~Ldr~~~~~K~~l~~~~a~lvY~G~wfsPlr~~l~afi~~tq~~  331 (385)
T cd01999         260 VIGIKSREVYEAPGATILIKAHRDLESLTLDREVLHFKDIVDPKYAELVYNGLWFSPLREALEAFIDKTQER  331 (385)
T ss_pred             EECEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCE
T ss_conf             001122005635538899999999999857799999999999999999854355788899999999986384


No 162
>smart00335 ANX Annexin repeats.
Probab=55.06  E-value=17  Score=17.27  Aligned_cols=27  Identities=19%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             88999999999999997279989999999
Q gi|255764481|r  209 FSRDTIHLIRAVYKQIFQQGDSIYKNAGA  237 (271)
Q Consensus       209 ~s~e~i~~l~~ayr~lfr~~~~l~e~l~~  237 (271)
                      .++.++..++++|+..|  +.+|.++++.
T Consensus        14 Rs~~ql~~I~~~Y~~~y--~~~L~~~i~~   40 (53)
T smart00335       14 RSNAQLQAIKQAYKKRY--GKDLEDDIKS   40 (53)
T ss_pred             CCHHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_conf             99999999999999883--9789999887


No 163
>PRK00509 argininosuccinate synthase; Provisional
Probab=54.95  E-value=16  Score=17.42  Aligned_cols=61  Identities=7%  Similarity=0.034  Sum_probs=39.5

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf             20144428-889999999999999972799---------899999999964-25898999999998615888
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIFQQGD---------SIYKNAGAIREQ-NVSCPEVSDIINFIFADRKR  261 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lfr~~~---------~l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~rR  261 (271)
                      .+|||-|+ |..---..|.+|+|.|-.--+         .+.+...+|.-+ ..-+|+.+.+-.||..++++
T Consensus       263 ~vGiKsRgvYEaPaa~iL~~AHr~LE~~~Ldr~~~~~K~~l~~~~a~lvY~G~wfsP~~~~l~afi~~sQ~~  334 (398)
T PRK00509        263 LVGIKSREVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPLREALQAFIDETQEH  334 (398)
T ss_pred             EEEEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             232321004516548899999999999858799999999999999999863475788899999999985191


No 164
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=52.70  E-value=19  Score=17.03  Aligned_cols=52  Identities=12%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHCCC---CHHHHHHHHHH
Q ss_conf             44428889999999999999972--799899999999964258---98999999998
Q gi|255764481|r  204 MRRAGFSRDTIHLIRAVYKQIFQ--QGDSIYKNAGAIREQNVS---CPEVSDIINFI  255 (271)
Q Consensus       204 lkR~g~s~e~i~~l~~ayr~lfr--~~~~l~e~l~~l~~~~~~---~~~v~~~~~Fi  255 (271)
                      +...-|++++|+.+++||.++.+  .+.--...+..+...++.   .+++.++++=+
T Consensus         9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~   65 (160)
T COG5126           9 LTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEI   65 (160)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf             211558999999999999773767899873899999999838999689999999854


No 165
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.  A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=50.39  E-value=21  Score=16.80  Aligned_cols=46  Identities=9%  Similarity=0.213  Sum_probs=35.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             42888999999999999997279989999999996425898999999
Q gi|255764481|r  206 RAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDII  252 (271)
Q Consensus       206 R~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~  252 (271)
                      +|-|+.+++..|+.+-.++ ..|.++++..+.|+++..+.+..++|.
T Consensus        37 ~R~Ys~~dl~~l~~I~~l~-~~G~sl~~i~~~L~~~~~~~e~~~~~~   82 (88)
T cd01105          37 QRKYSLADVDRLLVIKELL-DEGFTLAAAVEKLRRRRVQAEVRRRLM   82 (88)
T ss_pred             CEECCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             2147999999999999999-979989999999998577099999999


No 166
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244    This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=46.95  E-value=17  Score=17.32  Aligned_cols=50  Identities=14%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHCCCC-H--HHHHHHHHHHHCCCCCCCCC
Q ss_conf             2888999999999999997279989-99999999642589-8--99999999861588873787
Q gi|255764481|r  207 AGFSRDTIHLIRAVYKQIFQQGDSI-YKNAGAIREQNVSC-P--EVSDIINFIFADRKRPLSNW  266 (271)
Q Consensus       207 ~g~s~e~i~~l~~ayr~lfr~~~~l-~e~l~~l~~~~~~~-~--~v~~~~~Fi~~s~rRgi~~~  266 (271)
                      .+||+.|+.-+-+-      .++++ +|+|+.|++.-.++ |  -++-|.|-+    ||-|||-
T Consensus        96 HafSp~Ev~f~A~~------~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~v----Rr~IcP~  149 (331)
T TIGR00423        96 HAFSPMEVYFLAKN------EGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSV----RRKICPN  149 (331)
T ss_pred             ECCCHHHHHHHHHH------CCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHH----HHHHCCC
T ss_conf             14686899999986------189788999999888503567776226530335----8754779


No 167
>pfam00764 Arginosuc_synth Arginosuccinate synthase. This family contains a PP-loop motif.
Probab=44.73  E-value=25  Score=16.26  Aligned_cols=61  Identities=8%  Similarity=0.086  Sum_probs=38.8

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf             20144428-889999999999999972799---------899999999964-25898999999998615888
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIFQQGD---------SIYKNAGAIREQ-NVSCPEVSDIINFIFADRKR  261 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lfr~~~---------~l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~rR  261 (271)
                      .+|||-|+ |..---..|.+|+|.|-.--+         .+.+...++.-+ ..-+|+.+.+-.|+..++++
T Consensus       257 ~vGiKsRgvYEaPgatiL~~AHr~LE~l~Ldr~~~~~K~~l~~~~a~lvY~G~wfsP~r~~l~afi~~~q~~  328 (389)
T pfam00764       257 LVGLKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRIVDQKYAELVYDGLWFSPLKEALDAFIDKTQER  328 (389)
T ss_pred             EEEEEECCEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             000230303118169999999999999847698999999999999998755463788999999999996092


No 168
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518   Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , .   In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation.   AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=44.53  E-value=25  Score=16.24  Aligned_cols=60  Identities=12%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             CHHHHCC-CCHHHHHHHHHHHHHHHH---------CCC-CHHHHHHHHHHH-CCCCHHHHHH-HHHHHHCCCC
Q ss_conf             0144428-889999999999999972---------799-899999999964-2589899999-9998615888
Q gi|255764481|r  202 VAMRRAG-FSRDTIHLIRAVYKQIFQ---------QGD-SIYKNAGAIREQ-NVSCPEVSDI-INFIFADRKR  261 (271)
Q Consensus       202 ~glkR~g-~s~e~i~~l~~ayr~lfr---------~~~-~l~e~l~~l~~~-~~~~~~v~~~-~~Fi~~s~rR  261 (271)
                      +|||-|+ +..--...|.+|||.|-.         ... ..++.+.+|--+ ++..|+...| =.||+.+++|
T Consensus       283 ig~KSRe~YE~Pg~~~L~~AH~~Le~L~l~~~~~~f~~s~~~~~y~~LiY~GlwfdPl~e~LR~a~i~~~Q~~  355 (420)
T TIGR00032       283 IGLKSREIYEAPGATLLIKAHRDLEQLTLTRDVLRFKDSIVEEKYSELIYNGLWFDPLKEALRDAFIRKTQER  355 (420)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             3132454010157999999999986111118999998864115789998620147807899999998887740


No 169
>PRK04527 argininosuccinate synthase; Provisional
Probab=44.42  E-value=24  Score=16.35  Aligned_cols=61  Identities=10%  Similarity=0.091  Sum_probs=38.7

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf             20144428-889999999999999972799---------899999999964-25898999999998615888
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIFQQGD---------SIYKNAGAIREQ-NVSCPEVSDIINFIFADRKR  261 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lfr~~~---------~l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~rR  261 (271)
                      .+|||-|+ |..---..|..|+|.|-.--+         .+.+...+|.-+ ..-+|+.+.+-.||..++++
T Consensus       264 ~vG~KsRgvYEaPa~~iL~~AHr~LE~~~ld~~~~~~K~~l~~~~a~lvY~G~WfsPlr~~l~afi~~sq~~  335 (397)
T PRK04527        264 VIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFYHDPLKTDIEAFLKSSQAK  335 (397)
T ss_pred             EEEEECCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             232341514338189999999999998717899999999988999886507750788999999999997396


No 170
>PRK13820 argininosuccinate synthase; Provisional
Probab=43.04  E-value=27  Score=16.09  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf             20144428-889999999999999972799---------899999999964-25898999999998615888
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIFQQGD---------SIYKNAGAIREQ-NVSCPEVSDIINFIFADRKR  261 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lfr~~~---------~l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~rR  261 (271)
                      .+|||-|+ |..---..|..|+|.|-.--+         .+.+...+|.-+ ..-+|+.+.+-.|+..++++
T Consensus       261 ~vGiKsR~vYEaPaatiL~~AHr~LE~~tLdr~~~~~K~~l~~~~a~lvY~G~wfsPlr~~l~afi~~sq~~  332 (395)
T PRK13820        261 VLGLKARENYEHPAATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYKGLVHEPLRDDLNAFIDKTQER  332 (395)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             011322630058189999999999998627788999999999999999856763788999999999985092


No 171
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins.  Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus.  Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid.  The specific function of this domain is unknown.
Probab=42.94  E-value=27  Score=16.09  Aligned_cols=54  Identities=13%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH-HHHHHHHHHHH
Q ss_conf             4442888999999999999997279989999999996425898-99999999861
Q gi|255764481|r  204 MRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCP-EVSDIINFIFA  257 (271)
Q Consensus       204 lkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~-~v~~~~~Fi~~  257 (271)
                      |++.+++.++.+.+.+.|+..-....++++-+.++...+...| ....+++|+-.
T Consensus        28 ~~~~~~~~~~~~~a~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~L~~   82 (106)
T cd07316          28 MDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQ   82 (106)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             8753799999999999999875267789999999999876899999999999999


No 172
>PRK13340 alanine racemase; Reviewed
Probab=42.13  E-value=18  Score=17.15  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=24.1

Q ss_pred             HHCCCCCC-CCCCCHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             10745323-344201444288899999999999999
Q gi|255764481|r  190 NGNPGALR-GVNVVAMRRAGFSRDTIHLIRAVYKQI  224 (271)
Q Consensus       190 ~G~pa~~~-~~N~~glkR~g~s~e~i~~l~~ayr~l  224 (271)
                      .|.|.++. .+|+.||.|.||+.++...+.++.++.
T Consensus       153 ~~~~~~vHlkiDTtGM~RlG~~~~~~~~~~~~~~i~  188 (404)
T PRK13340        153 NGKPIDIHLALNSGGMGRNGLDPSTFRGAWEAVRIA  188 (404)
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             199547999981688666798810289999999996


No 173
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator; InterPro: IPR011789    This entry represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system . This protein is a member of the MerR family of transcriptional activators and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue .; GO: 0003677 DNA binding, 0005507 copper ion binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription.
Probab=40.15  E-value=30  Score=15.82  Aligned_cols=56  Identities=13%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             CCCCH-HHHCCCCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             44201-4442888999999999999997279-98999999999642589899999999
Q gi|255764481|r  199 VNVVA-MRRAGFSRDTIHLIRAVYKQIFQQG-DSIYKNAGAIREQNVSCPEVSDIINF  254 (271)
Q Consensus       199 ~N~~g-lkR~g~s~e~i~~l~~ayr~lfr~~-~~l~e~l~~l~~~~~~~~~v~~~~~F  254 (271)
                      |+.+- -|+.|||-|++++|-..|.-=-|.- ..-+-+++++.|-.....+.+.|-+-
T Consensus        47 L~li~raR~~GFSLeEc~~ll~L~ndp~R~SAdVK~rtl~k~~E~~~kI~eL~~m~~q  104 (127)
T TIGR02044        47 LRLISRARSVGFSLEECKELLSLWNDPNRTSADVKARTLEKVAELERKISELQEMKDQ  104 (127)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999871898899999987522888988788999998899999999999889999


No 174
>pfam03586 Herpes_UL36 Herpesvirus UL36 tegument protein. The UL36 open reading frame (ORF) encodes the largest herpes simplex virus type 1 (HSV-1) protein, a 270-kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells. This family only covers a small central part of this large protein.
Probab=40.10  E-value=29  Score=15.92  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=36.3

Q ss_pred             CCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             331000107453233442014442888999999999999997279989999999996425898999999998615
Q gi|255764481|r  184 IPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFAD  258 (271)
Q Consensus       184 pp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~s  258 (271)
                      +.|..++-.-+.+-|++..+|.|.--=.+.|...-.+    -.+.....+.+..+..+..+.|+..+++||.+++
T Consensus        96 daF~~aAp~y~~LFgvdve~L~~L~rIa~~iL~~a~a----~~G~idy~~~V~~l~~dL~~vP~L~kYVdFYrrg  166 (253)
T pfam03586        96 DAFPAAAPYYETLFGVDVEPLMRLLRIAGGILEHAAA----GGGNIDYYDAVGTLSGDLLAVPELAKYVDFYRRG  166 (253)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             7656667899999756589999999999999999870----3898869999999899986283698899999954


No 175
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=39.37  E-value=31  Score=15.74  Aligned_cols=13  Identities=15%  Similarity=0.447  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999972
Q gi|255764481|r  214 IHLIRAVYKQIFQ  226 (271)
Q Consensus       214 i~~l~~ayr~lfr  226 (271)
                      ..++|++||.|-+
T Consensus       216 ~~eik~ayr~l~~  228 (269)
T PRK09430        216 DQEIKRAYRKLMS  228 (269)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999998


No 176
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850   This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=39.24  E-value=31  Score=15.73  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             14442888999999999999997279989999999996425898999999998615
Q gi|255764481|r  203 AMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFAD  258 (271)
Q Consensus       203 glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~s  258 (271)
                      -+.|++.|..+...+-+=--.|---+.+++|+|..+.++.. .|.+++++.-|++.
T Consensus        67 ~~~~~~ls~~~la~~TRQLATLl~AglPLeeaL~~l~~Q~e-~~~~~~~l~~iR~~  121 (414)
T TIGR02120        67 KLLRRRLSRAELALFTRQLATLLGAGLPLEEALAALLEQAE-KPRLKSVLAAIRSR  121 (414)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf             63168989999999999999999853409999999996259-57899999999999


No 177
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=37.57  E-value=20  Score=16.94  Aligned_cols=49  Identities=14%  Similarity=0.007  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             1321122333310001074532334420144428889999999999999
Q gi|255764481|r  175 GMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQ  223 (271)
Q Consensus       175 ~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~  223 (271)
                      |++.++.-||....--=.--+.+|++..|+-|..=+...++.|+++|..
T Consensus        24 ~~~~~~~~IP~iV~~Ci~~le~~GL~~EGIfRvsG~~~~I~~Lk~~fd~   72 (225)
T cd04396          24 GEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFST   72 (225)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf             7657799889499999999997499988802689879999999999766


No 178
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=37.46  E-value=22  Score=16.69  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             CEEEECCCEEECCCCCCCC-----CCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHH
Q ss_conf             5064047435013211223-----33310001074532334420144428889999999
Q gi|255764481|r  164 FTRIGKYAFIGGMTGVVHD-----VIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLI  217 (271)
Q Consensus       164 ~v~IG~~a~ig~gs~V~kd-----Vpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l  217 (271)
                      +..-|+..|-+.  +.+|-     |.. ..+.|- --++-..+-||||||+++|.|+..
T Consensus       325 ~~~fgRln~~~~--vlSKrkl~~lVe~-g~v~GW-DDPRlpTl~glrRRG~~peAir~f  379 (566)
T PRK04156        325 YIHYGRLKIEGF--VLSTSKIRKGIES-GEYSGW-DDPRLPTLRALRRRGILPEAIREL  379 (566)
T ss_pred             EEEEEEEECCCE--EEEHHHHHHHHHC-CCCCCC-CCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf             577767751531--3108899999862-988888-788427789998679999999999


No 179
>pfam00191 Annexin Annexin. This family of annexins also includes giardin that has been shown to function as an annexin.
Probab=36.76  E-value=34  Score=15.48  Aligned_cols=27  Identities=26%  Similarity=0.535  Sum_probs=22.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             88999999999999997279989999999
Q gi|255764481|r  209 FSRDTIHLIRAVYKQIFQQGDSIYKNAGA  237 (271)
Q Consensus       209 ~s~e~i~~l~~ayr~lfr~~~~l~e~l~~  237 (271)
                      .++.++..++++|+..|  +.+|.++++.
T Consensus        27 rs~~~l~~i~~~Y~~~y--g~~L~~~i~~   53 (66)
T pfam00191        27 RSNAQLQAIREAYKKLY--GKDLEKDIKS   53 (66)
T ss_pred             CCHHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_conf             89999999999999986--9789999987


No 180
>pfam03556 DUF298 Domain of unknown function (DUF298). Members of this family contain a basic helix-loop-helix leucine zipper motif. This domain is implicated in some aspect of neddylation of the cullin 3 family and has a possible role in the regulation of the protein modifier Nedd8 E3 ligase. Neddylation is the process by which the C-terminal glycine of the ubiquitin-like protein Nedd8 is covalently linked to lysine residues in a protein through an isopeptide bond.
Probab=36.17  E-value=34  Score=15.43  Aligned_cols=49  Identities=16%  Similarity=0.231  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHH-------CCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999972-------799899999999964258--98999999998615888737
Q gi|255764481|r  216 LIRAVYKQIFQ-------QGDSIYKNAGAIREQNVS--CPEVSDIINFIFADRKRPLS  264 (271)
Q Consensus       216 ~l~~ayr~lfr-------~~~~l~e~l~~l~~~~~~--~~~v~~~~~Fi~~s~rRgi~  264 (271)
                      .-++.|+..|.       +.+.++.|++-.+--+..  .|.+...++|++...+|+|.
T Consensus        21 ~Fk~~Y~f~F~~~~~~~qk~l~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~k~Is   78 (117)
T pfam03556        21 KFKDLYRFTFDFAREEGQKSLDLETAIEYWKLLFGSRTFPLLDQWIEFLEEKHKKSIS   78 (117)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999997585658764999999999982888756899999999875677867


No 181
>pfam01244 Peptidase_M19 Membrane dipeptidase (Peptidase family M19).
Probab=34.68  E-value=35  Score=15.34  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=15.7

Q ss_pred             CHHHHCCCCHHHHHHH--HHHHHHH
Q ss_conf             0144428889999999--9999999
Q gi|255764481|r  202 VAMRRAGFSRDTIHLI--RAVYKQI  224 (271)
Q Consensus       202 ~glkR~g~s~e~i~~l--~~ayr~l  224 (271)
                      ..|.|+||++++|+.+  .+++|+|
T Consensus       290 ~~L~~rG~se~~i~ki~g~N~lRvl  314 (316)
T pfam01244       290 AELLRRGYSEAEIEKILGGNWLRVL  314 (316)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999869899999999856399984


No 182
>PTZ00184 calmodulin; Provisional
Probab=34.54  E-value=36  Score=15.26  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHH--CCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCCC
Q ss_conf             999999999972--79989999999996425---898999999998615888
Q gi|255764481|r  215 HLIRAVYKQIFQ--QGDSIYKNAGAIREQNV---SCPEVSDIINFIFADRKR  261 (271)
Q Consensus       215 ~~l~~ayr~lfr--~~~~l~e~l~~l~~~~~---~~~~v~~~~~Fi~~s~rR  261 (271)
                      ..+++||+.+=+  +|.--.+.+.++.....   ...++++++..+.....+
T Consensus        84 ~~l~~aF~~~D~d~~G~I~~~el~~~l~~lg~~~s~~ei~~l~~~~D~d~dG  135 (149)
T PTZ00184         84 EEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG  135 (149)
T ss_pred             HHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             9999998731689998684999999999858988699999999987889999


No 183
>pfam07319 DnaI_N Primosomal protein DnaI N-terminus. This family represents the N-terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase.
Probab=34.37  E-value=37  Score=15.25  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999972799899999999964258989999999
Q gi|255764481|r  217 IRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIIN  253 (271)
Q Consensus       217 l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~  253 (271)
                      +.++.+.+.. ...+.++.+++.++..+.|+|+.|+.
T Consensus         4 I~~~l~~~~~-~~~~~~r~e~l~~~vl~dpdVqaFl~   39 (93)
T pfam07319         4 IGETLKKLMQ-NRDFQKRYEQLKKEVLKDPDVQAFLQ   39 (93)
T ss_pred             HHHHHHHHHH-CHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             7999999983-30077999999999973998999999


No 184
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=34.18  E-value=20  Score=16.92  Aligned_cols=52  Identities=17%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             4442888999999999999997279989999999996425898999999998
Q gi|255764481|r  204 MRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFI  255 (271)
Q Consensus       204 lkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi  255 (271)
                      +|+.|||-++|+.+-.....--.....+++.+++++++..+-...+..++-+
T Consensus        52 ~r~lGfsL~EI~~ll~~~~~~~~~~~~l~~~~~~i~~~I~~L~~~r~~L~~~  103 (120)
T cd04781          52 GRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELLRHV  103 (120)
T ss_pred             HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9995999999999884268983799999999999999999999999999998


No 185
>TIGR02589 cas_Csd2 CRISPR-associated protein, Csd2 family; InterPro: IPR013418    This entry represents one of two closely related subfamilies that belong to the larger family of CRISPR-associated protein TM1801. Members are the Csd2 proteins of the Dvulg subtype of the CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. A related entry is IPR013419 from INTERPRO, the Csh2 protein of the Hmari CRISPR subtype..
Probab=33.33  E-value=38  Score=15.14  Aligned_cols=43  Identities=21%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             CCCCCCCCHHHHCCCCCCC-CCCCHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             2233331000107453233-44201444288899999999999999727
Q gi|255764481|r  180 VHDVIPYGILNGNPGALRG-VNVVAMRRAGFSRDTIHLIRAVYKQIFQQ  227 (271)
Q Consensus       180 ~kdVpp~~~~~G~pa~~~~-~N~~glkR~g~s~e~i~~l~~ayr~lfr~  227 (271)
                      +|..-||.+|.     .+| +|.-=-++-|||.|+...|+++.-.||..
T Consensus       190 ~Kh~V~YGlY~-----~~Gfisa~lA~~TGFs~eDl~~~~~~L~~lFE~  233 (307)
T TIGR02589       190 RKHTVDYGLYV-----AHGFISAQLAEKTGFSDEDLELIKEALVNLFEN  233 (307)
T ss_pred             CCCEECCCEEE-----EEECCCHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             12220561478-----860107577742488888999999998634005


No 186
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=32.77  E-value=26  Score=16.13  Aligned_cols=15  Identities=27%  Similarity=0.782  Sum_probs=6.2

Q ss_pred             CCCHHHHCCCCHHHH
Q ss_conf             420144428889999
Q gi|255764481|r  200 NVVAMRRAGFSRDTI  214 (271)
Q Consensus       200 N~~glkR~g~s~e~i  214 (271)
                      .+-||||||++++.|
T Consensus       295 Tl~glrRRG~~peAi  309 (556)
T PRK05347        295 TISGLRRRGYTPESI  309 (556)
T ss_pred             HHHHHHHCCCCHHHH
T ss_conf             668887569998999


No 187
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963    Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland .  L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O  ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=32.67  E-value=30  Score=15.75  Aligned_cols=42  Identities=19%  Similarity=0.397  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHC----CCCHHHHHHHHHHHHC---CCCCCCCCCCCC
Q ss_conf             98999999999642----5898999999998615---888737876348
Q gi|255764481|r  229 DSIYKNAGAIREQN----VSCPEVSDIINFIFAD---RKRPLSNWGNSK  270 (271)
Q Consensus       229 ~~l~e~l~~l~~~~----~~~~~v~~~~~Fi~~s---~rRgi~~~~~~~  270 (271)
                      ....+++..|+...    .+.|.++++++|+++-   +=|+++.|.++|
T Consensus       238 ~efl~Nl~lL~~~cGY~E~niPQL~dvs~FLK~kTGF~~RPVAGYLSaR  286 (499)
T TIGR01270       238 KEFLDNLPLLEKYCGYREDNIPQLEDVSKFLKAKTGFRLRPVAGYLSAR  286 (499)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCHH
T ss_conf             5665105778752688768775278999996322585425635656643


No 188
>TIGR02225 recomb_XerD tyrosine recombinase XerD; InterPro: IPR011932   Proteins in this entry are part of the wider so-called "phage" integrase fmaily which describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci.   This entry represents the chromosomally-encoded polypeptide XerD, which is closely related to, and interacts with, another chromosomally-encoded polypeptide, XerC (IPR011931 from INTERPRO). These proteins are site-specific tyrosine recombinases, which act by catalyzing the cutting and rejoining of the recombining DNA molecules . They form a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.   XerD is composed of two domains, an N-terminal alpha-helical domain, and a C-terminal domain composed mostly of alpha helices, with a three-stranded antiprallel beta sheet along one edge . The active site is found at the extreme C-terminal end of the polypeptide. Most of the C-terminal domain is structurally homologous to that of other "phage" integrases, but the active site regions of these enzymes are stucturally distinct.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=30.80  E-value=42  Score=14.88  Aligned_cols=61  Identities=16%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             CHHHHCCCCHH----HHHHHHHHHHHHHHCCCCHHHHHHH-HH-----HHCCC---CHHHHHHHHHH-HHCCCCC
Q ss_conf             01444288899----9999999999997279989999999-99-----64258---98999999998-6158887
Q gi|255764481|r  202 VAMRRAGFSRD----TIHLIRAVYKQIFQQGDSIYKNAGA-IR-----EQNVS---CPEVSDIINFI-FADRKRP  262 (271)
Q Consensus       202 ~glkR~g~s~e----~i~~l~~ayr~lfr~~~~l~e~l~~-l~-----~~~~~---~~~v~~~~~Fi-~~s~rRg  262 (271)
                      ..|+++|+++.    .|..|+..|+.|++.+..-.+=.+. |+     ...++   -+||..|++.- ..+..-|
T Consensus        53 ~~l~~~g~~~~S~AR~lsalR~Fy~fL~~e~~~~~dP~~~~~~~PK~~~~LP~vLt~~EV~~LL~~p~~~~~~~g  127 (305)
T TIGR02225        53 AELKEAGLSARSIARALSALRSFYRFLLREGLREDDPSALRIETPKVARKLPKVLTVEEVEALLAAPIDVDTPLG  127 (305)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             999866877002889999999999999868874557336642034224578883798999999850024677676


No 189
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=30.31  E-value=42  Score=14.89  Aligned_cols=17  Identities=18%  Similarity=0.231  Sum_probs=6.5

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             88999999999999997
Q gi|255764481|r  209 FSRDTIHLIRAVYKQIF  225 (271)
Q Consensus       209 ~s~e~i~~l~~ayr~lf  225 (271)
                      +-+.-+..+.++|..+-
T Consensus        92 ~~R~i~r~lee~~~~~k  108 (189)
T COG3945          92 EGRYIIRDLEEAYERLK  108 (189)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             68999999999999988


No 190
>KOG0819 consensus
Probab=29.84  E-value=44  Score=14.78  Aligned_cols=17  Identities=18%  Similarity=0.698  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999972
Q gi|255764481|r  210 SRDTIHLIRAVYKQIFQ  226 (271)
Q Consensus       210 s~e~i~~l~~ayr~lfr  226 (271)
                      |++++.+++++|...|.
T Consensus       119 T~~el~~i~~aY~~~y~  135 (321)
T KOG0819         119 TNEELRAIRQAYQELYK  135 (321)
T ss_pred             CHHHHHHHHHHHHHHHC
T ss_conf             98999999999999976


No 191
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=29.53  E-value=29  Score=15.87  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=30.4

Q ss_pred             CCCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHH
Q ss_conf             44433650640474350132112233331000107453233442014442888999999999
Q gi|255764481|r  158 GSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRA  219 (271)
Q Consensus       158 ~~~v~~~v~IG~~a~ig~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~  219 (271)
                      -+..-.+++|-+--.. .-|...|++... .+.||===+|=-.+=++||||+.+|.|+.+-.
T Consensus       326 ~~~hyg~~ki~~v~~L-sts~~~~~i~~g-~y~GnWDDpRLpTlRa~rRRG~~pEai~~~~~  385 (600)
T TIGR00463       326 EFIHYGRLKINDVRTL-STSSIKKGIVRG-DYSGNWDDPRLPTLRAVRRRGIKPEAIREFML  385 (600)
T ss_pred             CEEEEEEEEHHHHHHH-HHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             0234411551133232-103454110126-51246568886302332117881578999999


No 192
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.52  E-value=28  Score=15.99  Aligned_cols=43  Identities=19%  Similarity=0.093  Sum_probs=27.6

Q ss_pred             CCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
Q ss_conf             2233331000107453233442014442888999999999999
Q gi|255764481|r  180 VHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYK  222 (271)
Q Consensus       180 ~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr  222 (271)
                      .++||..-.-.-.--...|++.+|+-|..=+..+++.|++.|+
T Consensus        15 ~~~IP~iv~~ci~~le~~GL~~EGIFR~sGs~~~i~~L~~~~~   57 (207)
T cd04379          15 SRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFE   57 (207)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf             9995889999999999858997863424787999999999995


No 193
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC; InterPro: IPR013401    This protein is found in type III secretion operons and, in Yersinia, is localized to the cell surface and is involved in the Low-Calcium Response (LCR), possibly by sensing the calcium concentration . In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA . Negative regulation of type III secretion in Y. pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA ; GO: 0030254 protein secretion by the type III secretion system, 0050709 negative regulation of protein secretion, 0009986 cell surface.
Probab=29.46  E-value=44  Score=14.74  Aligned_cols=65  Identities=18%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             CCCCCCCCCCCHHHHCCC----CHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             745323344201444288----8999----99999999999727998999999999642589899999999861
Q gi|255764481|r  192 NPGALRGVNVVAMRRAGF----SRDT----IHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFA  257 (271)
Q Consensus       192 ~pa~~~~~N~~glkR~g~----s~e~----i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~  257 (271)
                      .|.-.-++|+- |+...|    +.+.    +..|+..||..-..-.++.+.++.+.+.+...+.+.-.++|+..
T Consensus       147 ~~~~~a~~~~~-l~~~~fa~~~~~~~~~~~l~~LR~lYr~~~~~~~~~~~~~~~~~er~~~~~d~~~~l~~l~~  219 (265)
T TIGR02568       147 GPEIRAGINTA-LAAAAFADSLDAKARVSDLSALRDLYRQAVSDQSSLSQLLEDLIERYGAQRDFSIALDFLIR  219 (265)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             86347777677-88898742144120134699999998998404545899999999852554248999999999


No 194
>PRK05665 amidotransferase; Provisional
Probab=28.15  E-value=47  Score=14.59  Aligned_cols=58  Identities=9%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             CCCHHHH-CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             4201444-2888999999999999997279989999999996425898999999998615
Q gi|255764481|r  200 NVVAMRR-AGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFAD  258 (271)
Q Consensus       200 N~~glkR-~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~s  258 (271)
                      +..+++- .-|+++-.++|-+..|..+ .....+++++.|..........+-|++|++..
T Consensus       178 ~~~~~Q~HPEf~~~~~~~ll~~R~~~i-~~~~~~~a~~sl~~~~D~~~~a~~i~~Fl~~~  236 (240)
T PRK05665        178 QVLCFQGHPEFVHDYSRALLDLRQEHL-GEEVYSKGVASLAHDHQGTLVAEWMMRFVAQK  236 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             689991696879999999999977636-99999999997068875899999999998428


No 195
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA .    .
Probab=27.80  E-value=34  Score=15.47  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             CCCCCEEEECCCEEECCCCCC------------CCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             433650640474350132112------------233331000107453233442014442888999999999999997
Q gi|255764481|r  160 AVHQFTRIGKYAFIGGMTGVV------------HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIF  225 (271)
Q Consensus       160 ~v~~~v~IG~~a~ig~gs~V~------------kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lf  225 (271)
                      +|.|-.-=|+|..|+|||.||            .+=--|.|++||+..-          -=.-+|++..||..|=.-|
T Consensus       115 tiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~Nr~~~----------~vMFa~~L~DLKd~yp~Rf  182 (371)
T TIGR02160       115 TIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGNRRSA----------SVMFAEELADLKDKYPQRF  182 (371)
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC----------CHHHHHHHHHHHCCHHHHH
T ss_conf             8888606896899981787058999999874069952089996178887----------2778998987631204578


No 196
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.41  E-value=48  Score=14.51  Aligned_cols=40  Identities=10%  Similarity=0.232  Sum_probs=27.7

Q ss_pred             CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             420144428889999999999999972799899999999964
Q gi|255764481|r  200 NVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQ  241 (271)
Q Consensus       200 N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~  241 (271)
                      .+++-+|-+--.++.++.++.+|...+++.  .+++++|+++
T Consensus        67 ~liD~ekm~~~qk~m~efq~e~~eA~~~~d--~~~lkkLq~~  106 (201)
T COG1422          67 LLIDQEKMKELQKMMKEFQKEFREAQESGD--MKKLKKLQEK  106 (201)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHH
T ss_conf             960299999999999999999999998088--9999999999


No 197
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; InterPro: IPR011863   This protein is has been characterised as both a phosphoserine phosphatase and a phosphoserine:homoserine phosphotransferase . In Pseudomonas aeruginosa, where the characterization was done, a second phosphoserine phosphatase (SerB) and a second homoserine kinase (thrB) are found, but in Fibrobacter succinogenes neither are present. .
Probab=26.69  E-value=27  Score=16.06  Aligned_cols=39  Identities=15%  Similarity=0.229  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH
Q ss_conf             3211223333100010745323344201444288899999999999
Q gi|255764481|r  176 MTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVY  221 (271)
Q Consensus       176 gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ay  221 (271)
                      --.-|+|||.|-+..-.+-|+       |.|.++.-.+|+++-...
T Consensus        29 L~~TTRDIPDYDVLMK~R~~I-------L~~~~~KL~DIQ~VIA~L   67 (203)
T TIGR02137        29 LKLTTRDIPDYDVLMKQRLKI-------LDRENLKLSDIQEVIATL   67 (203)
T ss_pred             HHHHCCCCCCHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHC
T ss_conf             531037898434465556655-------421587124568887615


No 198
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=26.57  E-value=50  Score=14.42  Aligned_cols=60  Identities=8%  Similarity=0.094  Sum_probs=39.3

Q ss_pred             CCHHHHCC-CCHHHHHHHHHHHHHHH---------HCCC-CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCC
Q ss_conf             20144428-88999999999999997---------2799-899999999964-2589899999999861588
Q gi|255764481|r  201 VVAMRRAG-FSRDTIHLIRAVYKQIF---------QQGD-SIYKNAGAIREQ-NVSCPEVSDIINFIFADRK  260 (271)
Q Consensus       201 ~~glkR~g-~s~e~i~~l~~ayr~lf---------r~~~-~l~e~l~~l~~~-~~~~~~v~~~~~Fi~~s~r  260 (271)
                      .+|||-|+ +..---..|..|+|.|-         +... .+.+...+|.-+ +..+|+...|-.|+..+++
T Consensus       265 ~vG~KSRevYE~Pg~tiL~~AHr~LE~ltl~r~~~~~k~~~~~~~~a~lvY~GlWf~Pl~~~L~a~~~~~q~  336 (403)
T COG0137         265 LVGIKSREVYEAPGATILLTAHRALESLTLDREEAHFKDIELGPKYAELVYNGLWFSPLREALRAFIDETQE  336 (403)
T ss_pred             EEEEECCHHCCCCHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             011202100248219999999999976340687776443221789999986787348799999999999885


No 199
>pfam05476 PET122 PET122. The nuclear PET122 gene of S. cerevisiae encodes a mitochondrial-localized protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase.
Probab=25.76  E-value=51  Score=14.33  Aligned_cols=57  Identities=12%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             344201444288899999999999999727998999999999642589899999999861
Q gi|255764481|r  198 GVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFA  257 (271)
Q Consensus       198 ~~N~~glkR~g~s~e~i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~  257 (271)
                      =||.+=|. ..++.+.--.+-+-|+..|+ ++.+.+.++-+-.+. +.-...++.+|++.
T Consensus       206 LLNmiLlq-~~~~~d~KirlF~~F~~~~~-~l~l~DSi~IL~~~~-~~y~~~~L~~f~~~  262 (267)
T pfam05476       206 LLNMVLLQ-NEFPLDFRIRLFAEFRTSYR-GLPYLDSIEILIKRC-EGYRMNELLTFVRG  262 (267)
T ss_pred             HHHHHHCC-CCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf             99999818-88883789999999998588-984677999999870-50879999999995


No 200
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=25.59  E-value=51  Score=14.33  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=18.3

Q ss_pred             CCCCCHHHHCCCCHHHHHHHHHHHH
Q ss_conf             3442014442888999999999999
Q gi|255764481|r  198 GVNVVAMRRAGFSRDTIHLIRAVYK  222 (271)
Q Consensus       198 ~~N~~glkR~g~s~e~i~~l~~ayr  222 (271)
                      .++ .||.|.||+++++..+.+.++
T Consensus       120 kiD-TGM~RlG~~~~e~~~~~~~~~  143 (368)
T cd06825         120 KVD-TGMHRLGESPEDIDSILAIYR  143 (368)
T ss_pred             EEC-CCCCCCCCCHHHHHHHHHHHH
T ss_conf             970-799867888789999999986


No 201
>pfam12098 DUF3574 Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=25.39  E-value=52  Score=14.28  Aligned_cols=19  Identities=47%  Similarity=0.662  Sum_probs=16.0

Q ss_pred             CHHHHHHHHHHHHHHHHCC
Q ss_conf             8999999999999997279
Q gi|255764481|r  210 SRDTIHLIRAVYKQIFQQG  228 (271)
Q Consensus       210 s~e~i~~l~~ayr~lfr~~  228 (271)
                      +...+.+|+.+||..|++.
T Consensus        73 ~~~~i~~I~~aYK~~F~Q~   91 (104)
T pfam12098        73 KRADIEAIREAYKQRFHQQ   91 (104)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             7999999999999876675


No 202
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=25.23  E-value=34  Score=15.43  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=12.5

Q ss_pred             CCCCCCHHHHCCCCHHHHHHHHHHH
Q ss_conf             3344201444288899999999999
Q gi|255764481|r  197 RGVNVVAMRRAGFSRDTIHLIRAVY  221 (271)
Q Consensus       197 ~~~N~~glkR~g~s~e~i~~l~~ay  221 (271)
                      +|+...|+-|..=+..+++++++.|
T Consensus        31 ~Gl~~EGIFR~~G~~~~i~~L~~~~   55 (193)
T cd04382          31 RGLTEEGLYRVSGSEREVKALKEKF   55 (193)
T ss_pred             HCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf             1999898002688799999999998


No 203
>KOG1148 consensus
Probab=24.75  E-value=44  Score=14.76  Aligned_cols=44  Identities=27%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCCHHHHC---CCCCCCCCCCHHHHCCCCHHHHHHHHH
Q ss_conf             32112233331000107---453233442014442888999999999
Q gi|255764481|r  176 MTGVVHDVIPYGILNGN---PGALRGVNVVAMRRAGFSRDTIHLIRA  219 (271)
Q Consensus       176 gs~V~kdVpp~~~~~G~---pa~~~~~N~~glkR~g~s~e~i~~l~~  219 (271)
                      +++++|--....+..|.   =--++=..+.+||||||.++.|..--+
T Consensus       482 ~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~  528 (764)
T KOG1148         482 YTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCA  528 (764)
T ss_pred             EEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             35520677898864164046887410114567755998799999999


No 204
>pfam04282 DUF438 Family of unknown function (DUF438).
Probab=24.31  E-value=55  Score=14.16  Aligned_cols=46  Identities=7%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             899999999999999727998--9999999996425898999999998
Q gi|255764481|r  210 SRDTIHLIRAVYKQIFQQGDS--IYKNAGAIREQNVSCPEVSDIINFI  255 (271)
Q Consensus       210 s~e~i~~l~~ayr~lfr~~~~--l~e~l~~l~~~~~~~~~v~~~~~Fi  255 (271)
                      .-+....+|+-|+.+|.+-..  +..+=++|-++.....++++|||-=
T Consensus        11 ~G~~~e~vk~~F~~~~~~Vs~~EI~~~EqeLi~eG~~~~eiq~LCdvH   58 (79)
T pfam04282        11 NGGSPEEVKERFQELFKGVSPSEISAMEQELIAEGMPPEEIQKLCDVH   58 (79)
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             899999999999999778999999999999999599999999996999


No 205
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.81  E-value=56  Score=14.10  Aligned_cols=16  Identities=19%  Similarity=0.339  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             8899999999999999
Q gi|255764481|r  209 FSRDTIHLIRAVYKQI  224 (271)
Q Consensus       209 ~s~e~i~~l~~ayr~l  224 (271)
                      +++++...|++.-+.+
T Consensus       336 ls~~q~~lL~~~~~~~  351 (371)
T COG0484         336 LSDEQKELLEEFAKSL  351 (371)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9999999999998763


No 206
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=23.72  E-value=37  Score=15.23  Aligned_cols=82  Identities=13%  Similarity=0.191  Sum_probs=46.6

Q ss_pred             CEEECCCCCCCCCEEEECCCEEECCCCCCCCCC-CCCHHHHCCCCCC-----CCCCCHHHHCCCCH---HHHH--HHH-H
Q ss_conf             606523444336506404743501321122333-3100010745323-----34420144428889---9999--999-9
Q gi|255764481|r  152 RVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVI-PYGILNGNPGALR-----GVNVVAMRRAGFSR---DTIH--LIR-A  219 (271)
Q Consensus       152 ~~~IG~~~~v~~~v~IG~~a~ig~gs~V~kdVp-p~~~~~G~pa~~~-----~~N~~glkR~g~s~---e~i~--~l~-~  219 (271)
                      ++.|-..|.||.-|+.-|.++++--..=..-+| .|++.  .|-|..     .|...-+.---|.+   +++.  .+| =
T Consensus       249 dv~ih~~SIiHSlVe~~D~SViAqLG~PDMr~Pi~yal~--~p~r~~~~~~kPLDl~~~~~L~F~~~d~dRY~lWClkdL  326 (406)
T TIGR00243       249 DVVIHPQSIIHSLVEFQDGSVIAQLGSPDMRLPIAYALA--YPERLLSADVKPLDLYKLSALTFEEPDFDRYPLWCLKDL  326 (406)
T ss_pred             EEEECCCCEEEEEEEEECCCCEECCCCCCCCCHHHHHCC--CCHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             164667662676678857600011288622003897568--722323789870355542103557887664404568988


Q ss_pred             HHHHHHHCCCCHHHHHH
Q ss_conf             99999727998999999
Q gi|255764481|r  220 VYKQIFQQGDSIYKNAG  236 (271)
Q Consensus       220 ayr~lfr~~~~l~e~l~  236 (271)
                      || .=|+.|....-+|.
T Consensus       327 a~-ea~~~G~~~~~vLN  342 (406)
T TIGR00243       327 AL-EAGKAGGAMPTVLN  342 (406)
T ss_pred             HH-HHHHCCCHHHHHHH
T ss_conf             75-30520215889996


No 207
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869    This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=23.15  E-value=22  Score=16.64  Aligned_cols=36  Identities=22%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Q ss_conf             4288899999999999999727--99899999999964
Q gi|255764481|r  206 RAGFSRDTIHLIRAVYKQIFQQ--GDSIYKNAGAIREQ  241 (271)
Q Consensus       206 R~g~s~e~i~~l~~ayr~lfr~--~~~l~e~l~~l~~~  241 (271)
                      |+|++++.++.+++-=|+||=|  ..||.+.|++|.+.
T Consensus       297 RaGlD~~t~~Lv~~y~rIlYISCNP~TL~~NL~~L~~T  334 (361)
T TIGR02143       297 RAGLDPDTVKLVQKYERILYISCNPETLKENLEQLSET  334 (361)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf             88889899999962598799846968999999988606


No 208
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=23.03  E-value=30  Score=15.81  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             CEECCCEEECCCCCCCCCEEEECCCEE-ECCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             321486065234443365064047435-0132112233331000107453233442014442888999999999999997
Q gi|255764481|r  147 VIVDDRVVFGGGSAVHQFTRIGKYAFI-GGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIF  225 (271)
Q Consensus       147 v~Igd~~~IG~~~~v~~~v~IG~~a~i-g~gs~V~kdVpp~~~~~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lf  225 (271)
                      .+|++++.......-.+..++++.--= ---++...|--.-.+..|...-..++|..--.....++++|.++-+-|+..|
T Consensus       152 ~~I~~W~raA~~~~~~r~lkvarFGdnMr~VAVTeGDkveaq~~fG~~V~~~~vgdLv~~v~~Vsd~ei~al~~ey~~~Y  231 (484)
T cd03557         152 EKIGDWMRAAAGWADSRHLKVARFGDNMRNVAVTEGDKVEAQIQFGWSVNGYGVGDLVARVDAVSDSDVDALVDEYEALY  231 (484)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHCEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             99999999999999762476788566534622126508888786272685473038999998589999999999998604


Q ss_pred             HCCCCHH---HHHHHHHHH
Q ss_conf             2799899---999999964
Q gi|255764481|r  226 QQGDSIY---KNAGAIREQ  241 (271)
Q Consensus       226 r~~~~l~---e~l~~l~~~  241 (271)
                      .-...+.   +..+.++..
T Consensus       232 ~~~~~~~~~~~~~~~l~~a  250 (484)
T cd03557         232 DLAPELKDGGERRASLREA  250 (484)
T ss_pred             CCCCCCCCCHHHHHHHHHH
T ss_conf             6472224745789999999


No 209
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=22.81  E-value=58  Score=13.97  Aligned_cols=49  Identities=8%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8899999999999999727-998999999999642589899999999861
Q gi|255764481|r  209 FSRDTIHLIRAVYKQIFQQ-GDSIYKNAGAIREQNVSCPEVSDIINFIFA  257 (271)
Q Consensus       209 ~s~e~i~~l~~ayr~lfr~-~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~  257 (271)
                      +++.++..+++..+..|.- ....++-++..++...+++....|+.-|..
T Consensus        16 ~~~~E~~~i~~~l~~~f~l~~~~~~~l~~~a~~~~~~~~~l~~ft~~in~   65 (104)
T cd07313          16 YDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE   65 (104)
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             79999999999999987857899999999999988657349999998733


No 210
>PTZ00183 centrin; Provisional
Probab=22.47  E-value=59  Score=13.93  Aligned_cols=19  Identities=16%  Similarity=0.303  Sum_probs=11.7

Q ss_pred             HCCCCHHHHHHHHHHHHHH
Q ss_conf             4288899999999999999
Q gi|255764481|r  206 RAGFSRDTIHLIRAVYKQI  224 (271)
Q Consensus       206 R~g~s~e~i~~l~~ayr~l  224 (271)
                      +..+|.++++.|+++|+.+
T Consensus        18 ~~~ls~eq~~elke~F~~~   36 (168)
T PTZ00183         18 RPELNEEQKLEIREAFDLF   36 (168)
T ss_pred             CCCCCHHHHHHHHHHHHHH
T ss_conf             0269999999999999998


No 211
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.21  E-value=60  Score=13.90  Aligned_cols=19  Identities=26%  Similarity=0.294  Sum_probs=13.0

Q ss_pred             HHHHCCCCHHHHHHHHHHH
Q ss_conf             1444288899999999999
Q gi|255764481|r  203 AMRRAGFSRDTIHLIRAVY  221 (271)
Q Consensus       203 glkR~g~s~e~i~~l~~ay  221 (271)
                      -+|+.|||-++|+.+-..|
T Consensus        51 ~~r~~GfsL~eI~~ll~~~   69 (116)
T cd04769          51 EARQLGFTLAELKAIFAGH   69 (116)
T ss_pred             HHHHCCCCHHHHHHHHHHC
T ss_conf             9999799999999999643


No 212
>CHL00091 apcE phycobillisome linker protein
Probab=22.21  E-value=60  Score=13.90  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             CCHHHH-HHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCH-HHHHHHHHHHHC
Q ss_conf             889999-999999999972799---89999999996425898-999999998615
Q gi|255764481|r  209 FSRDTI-HLIRAVYKQIFQQGD---SIYKNAGAIREQNVSCP-EVSDIINFIFAD  258 (271)
Q Consensus       209 ~s~e~i-~~l~~ayr~lfr~~~---~l~e~l~~l~~~~~~~~-~v~~~~~Fi~~s  258 (271)
                      .+++++ ..|+.+||.+|....   -..+.+..+|..+.+.. .+++|++-+-.|
T Consensus       721 ~~~~~lq~vIrAaYRQvfeRd~~~yi~~eef~~aESkl~ng~IsVkEFVe~Lg~S  775 (886)
T CHL00091        721 SDSENLEQVLRAAYRQIFERDLNSFIAGGEFLDIESAFLNGQISVRELVEKLASS  775 (886)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             7799999999999999967897156665477899998755871199999996335


No 213
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=22.08  E-value=60  Score=13.88  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             EEEECCCEEECCC-CCCCCCCCCCHHHHCCCCCCCCCCCHHH-HCCC-------CHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             0640474350132-1122333310001074532334420144-4288-------89999999999999972799899999
Q gi|255764481|r  165 TRIGKYAFIGGMT-GVVHDVIPYGILNGNPGALRGVNVVAMR-RAGF-------SRDTIHLIRAVYKQIFQQGDSIYKNA  235 (271)
Q Consensus       165 v~IG~~a~ig~gs-~V~kdVpp~~~~~G~pa~~~~~N~~glk-R~g~-------s~e~i~~l~~ayr~lfr~~~~l~e~l  235 (271)
                      +.||++    .+| .|.=|+|||+++ |--.|.-.+-- -|+ |.|+       |.+++..+-+.+-.++.-.. -++++
T Consensus       112 i~IG~G----p~Ar~v~ldLpPFTLv-GATTR~G~lt~-PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei-~~~~a  184 (305)
T TIGR00635       112 IVIGKG----PSARSVRLDLPPFTLV-GATTRAGMLTS-PLRDRFGIILRLEFYTPEELAEIVSRSAGLLNIEI-EQEAA  184 (305)
T ss_pred             EEEECC----CCCCEEEECCCCCCCC-CCCCCCCCCCC-CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC-CHHHH
T ss_conf             787128----9852576068694420-00034774103-13345447454026898789999875334414300-77899


Q ss_pred             HHHHHHCCCCHH
Q ss_conf             999964258989
Q gi|255764481|r  236 GAIREQNVSCPE  247 (271)
Q Consensus       236 ~~l~~~~~~~~~  247 (271)
                      .++-...-.+|-
T Consensus       185 ~~IArrSRGTPR  196 (305)
T TIGR00635       185 LEIARRSRGTPR  196 (305)
T ss_pred             HHHHHHCCCCHH
T ss_conf             999875478637


No 214
>TIGR01926 peroxid_rel uncharacterized peroxidase-related enzyme; InterPro: IPR010195   Members of this family are conserved hypothetical proteins of around 200 amino acids in length. Many of them contain an akylhydroperoxidase (AhpD) domain. .
Probab=21.54  E-value=56  Score=14.09  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             HHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             10745323344201444288899999999999999727
Q gi|255764481|r  190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQ  227 (271)
Q Consensus       190 ~G~pa~~~~~N~~glkR~g~s~e~i~~l~~ayr~lfr~  227 (271)
                      .-.|+.+..--.--||..|||+++|-+|-... .+|-.
T Consensus       128 t~~P~~v~~~d~~~Lr~~GfsD~~IlD~~~~~-AfF~~  164 (179)
T TIGR01926       128 TATPAEVNEADLAALRAAGFSDEEILDLIHVV-AFFNW  164 (179)
T ss_pred             HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHH
T ss_conf             70851001898888875489958999999999-99857


No 215
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.38  E-value=48  Score=14.48  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=13.0

Q ss_pred             CCCCCCCHHHHCCCCHHHHHHHHHHH
Q ss_conf             23344201444288899999999999
Q gi|255764481|r  196 LRGVNVVAMRRAGFSRDTIHLIRAVY  221 (271)
Q Consensus       196 ~~~~N~~glkR~g~s~e~i~~l~~ay  221 (271)
                      ..|++.+|+-|..=+..+++.+++.|
T Consensus        29 ~~gl~~EGIfR~~G~~~~i~~L~~~~   54 (200)
T cd04408          29 NRALGVQGIYRISGSKARVEKLCQAF   54 (200)
T ss_pred             HHCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             85898475343068699999999999


No 216
>pfam09675 Chlamy_scaf Chlamydia-phage Chp2 scaffold (Chlamy_scaf). Members of this entry are encoded by genes in chlamydia-phage such as Chp2. These viruses have around eight genes and obligately infect intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=20.00  E-value=67  Score=13.61  Aligned_cols=44  Identities=11%  Similarity=0.189  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             9999999999972799899999999964258989999999986158
Q gi|255764481|r  214 IHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFADR  259 (271)
Q Consensus       214 i~~l~~ayr~lfr~~~~l~e~l~~l~~~~~~~~~v~~~~~Fi~~s~  259 (271)
                      ....+.|..++-+....+.+--+++++++.+.|  ..|++|+...+
T Consensus        30 v~Dy~eAmn~V~~A~e~F~~LPa~vR~~F~NDP--~~FleF~~dp~   73 (107)
T pfam09675        30 PIDYQEALNAVIEAQEAFDSLPAKIRERFGNDP--EEMLEFLNDPE   73 (107)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCH--HHHHHHHCCCC
T ss_conf             002999999999999999978899999877999--99999971955


Done!