RPSBLAST alignment for GI: 255764481 and conserved domain: TIGR01853
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324
Score = 94.3 bits (235), Expect = 3e-20
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 11/197 (5%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64
G+ I P ++ G IG N +IGP +G +V IG G + + V+ + ++G +
Sbjct: 107 GDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVII 166
Query: 65 FPMAVLGGDTQSKYHNFVGTEL--------LVGKKCVIREGVTINRGTVEYGGKTIVGDN 116
AV+G D H G + ++ I TI+RG TI+G+
Sbjct: 167 HSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAF---DDTIIGEG 223
Query: 117 NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176
+AH+C++G ++ V IAG + V+ GG V IG IG
Sbjct: 224 TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK 283
Query: 177 TGVVHDVIPYGILNGNP 193
+GV + P G+ G P
Sbjct: 284 SGVTKSIPPPGVYGGIP 300