RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region..
Length = 254
Score = 337 bits (867), Expect = 2e-93
Identities = 113/254 (44%), Positives = 160/254 (62%), Gaps = 1/254 (0%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A+V+ GA IG N IGPFC +G VEIG G + SH V+ G T IG ++FP A
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129
+G Q + T L +G IRE VTI+RGT + GG T +G+NN +A HVAHDC
Sbjct: 62 IGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDC 121
Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189
+GN ++L+NN +AGHV + D + GG SAVHQF RIG++A +GG +GVV DV PY I
Sbjct: 122 VIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA 181
Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249
GN LRG+N+V ++R GFSR+ I ++ Y+ +++ G ++ + + E+ PEV
Sbjct: 182 AGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYRSGLTLEEALEELEEEAPDSPEVE 241
Query: 250 DIINFIFADRKRPL 263
++++FI KR +
Sbjct: 242 ELVDFI-RSSKRGI 254
>gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 312 bits (800), Expect = 8e-86
Identities = 121/255 (47%), Positives = 162/255 (63%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A++E GA IG + IGPFC +G VEIG G L SH VV G T IG ++FP A
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFAS 65
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129
+G D Q + T L++G IRE VTI+RGTV+ GG T +GDNN +A +HVAHDC
Sbjct: 66 IGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDC 125
Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189
+GN +L+NN +AGHV V D + GG SAVHQF RIG +A IGG++ V DV PY I
Sbjct: 126 VIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIA 185
Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249
+GN LRG+N+V ++R GFSR+ IH +R YK +F+ G ++ + I E+ PEV
Sbjct: 186 SGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADNPEVK 245
Query: 250 DIINFIFADRKRPLS 264
+ I+FI + + +
Sbjct: 246 EFIDFIASSSRGIIR 260
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 205
Score = 105 bits (266), Expect = 1e-23
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64
G N I P A++ EG VIG +IGP +G V IG + + + IGD +
Sbjct: 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVII 64
Query: 65 FPMAVLGGD------TQSKYHNF--VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDN 116
AV+G D + +G +++G I TI+RG + G T++GD
Sbjct: 65 HSGAVIGSDGFGFAPDGGGWVKIPQLGG-VIIGDDVEIGANTTIDRGAL---GDTVIGDG 120
Query: 117 NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176
+AH+ ++G +++ V IAG + D V+ GG + IG IG
Sbjct: 121 TKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG 180
Query: 177 TGVVHDVIPYGILNGNP 193
+GV V P ++G P
Sbjct: 181 SGVTSIVPPGEYVSGTP 197
Score = 29.3 bits (67), Expect = 1.0
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 112 IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169
+G+N N+ + +G+G+V+ V+I V++ D V +++ IG
Sbjct: 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60
>gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 104 bits (261), Expect = 3e-23
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 10/200 (5%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62
+G N I P ++ G VIG N +IG +G V+IG G + + + IG+
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172
Query: 63 KVFPMAVLGGDTQSKYHNFVGTELL-------VGKKCVIREGVTINRGTVEYGGKTIVGD 115
+ AV+G D +G + +G I TI+RG + T++G+
Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGAL---DDTVIGE 229
Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG 175
+ H+ ++G +++ V IAG V + V+ GG + IG IG
Sbjct: 230 GVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGA 289
Query: 176 MTGVVHDVIPYGILNGNPGA 195
+GV+ + G G P
Sbjct: 290 RSGVMASITEPGYSGGIPAQ 309
Score = 31.8 bits (72), Expect = 0.22
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
+ +G I L + IG + +I + V+IG V + +AG +IGD
Sbjct: 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDG 284
Query: 62 TKVFPMAVLGGD 73
+ + +
Sbjct: 285 VTIGARSGVMAS 296
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation..
Length = 197
Score = 74.1 bits (183), Expect = 4e-14
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 81 FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNN 140
V ++G+ CVI G IN +GDN + + HDC +G+ + ++
Sbjct: 92 VVSPSAVIGEGCVIMAGAVINPDAR-------IGDNVIINTGAVIGHDCVIGDFVHIAPG 144
Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
V+++G V + + G G+ + Q IG A IG V DV ++ GNP
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197
Score = 61.7 bits (151), Expect = 2e-10
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
+IHP A+V AVIG +I + + IG V + + V+ IGDF + P
Sbjct: 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGV 145
Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105
VL G +G +G I +GVTI G +
Sbjct: 146 VLSGGVT------IGEGAFIGAGATIIQGVTIGAGAI 176
Score = 38.6 bits (91), Expect = 0.002
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
+R+G+N II+ A++ VIG I P + V IG G + + + IG
Sbjct: 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174
Query: 62 TKV 64
+
Sbjct: 175 AII 177
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 55.2 bits (133), Expect = 2e-08
Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCV-----VAGKTKIG 59
G + +I P ++E VIG N +IGP V + IG + ++ V V +G
Sbjct: 272 GRDVVIEPNVILEGNTVIGDNVVIGPG-SVIKDSVIGDNAVIKAYSVIEGSTVGEGATVG 330
Query: 60 DFTKVFPMAVLGGDTQSKYHNFV---GTELLVGKK---------CVIREGVTINRG--TV 105
F ++ P AVLG D NFV + G K I E V I G T
Sbjct: 331 PFARLRPGAVLGAD--VHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITC 388
Query: 106 EYGG----KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151
Y G KTI+GDN F +NS + +G+G ++ AG I D
Sbjct: 389 NYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIA-----AGSTITKD 433
Score = 39.0 bits (91), Expect = 0.001
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 40/168 (23%)
Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93
+ +VEIG V + + ++ G T IGD + P +V+ K V
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-------------------KDSV 305
Query: 94 IREGVTINRGTV----EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVM----IAG 145
I + I +V G VG + + D +GN + + + AG
Sbjct: 306 IGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAG 365
Query: 146 HVI------VDDRVVFGGGSAVHQF-------TRIGKYAFIGGMTGVV 180
H+ + + V G G+ + T IG FIG + +V
Sbjct: 366 HLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV 413
Score = 35.9 bits (83), Expect = 0.011
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 95 REGVTIN-------RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHV 147
GVT+ RG VE G ++ N N+ + + +G G V+ ++V+ V
Sbjct: 252 LAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAV 311
Query: 148 IVDDRVVFGGGSAVHQFTRIGKYAFI 173
I V+ GS V + +G +A +
Sbjct: 312 IKAYSVIE--GSTVGEGATVGPFARL 335
>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
pyrophosphorylase/mannose-1-phosphate
guanylyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 371
Score = 51.0 bits (122), Expect = 4e-07
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL----------ISHCV 51
S++ N ++ +A + E IGPN +IGP + V + L IS +
Sbjct: 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSI 318
Query: 52 VAGKTKIGDFTKVFPMAVLGGDT 74
V IG + ++ AVLG +
Sbjct: 319 VGWNVPIGIWARIDKNAVLGKNV 341
Score = 33.7 bits (77), Expect = 0.053
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNV 141
+G +++G + I +GV + T+ G + + +++S V + +G + N
Sbjct: 279 IGPNVVIGPRVRIEDGVRLQDSTI-LGADYY--ETHSEISSSIVGWNVPIGIWARIDKNA 335
Query: 142 MIAGHVIVDDRVVFGGGSAVH 162
++ +VIV D GS +
Sbjct: 336 VLGKNVIVADEDYVNEGSGLP 356
>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an
outer membrane protein which plays a role in iron
acquisition. It binds iron when it is complexed with
pyochelin. It adopts the left-handed parallel beta-helix
(LbH) structure, and contains imperfect tandem repeats
of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Acyltransferase activity has
not been observed in this group..
Length = 154
Score = 49.1 bits (117), Expect = 1e-06
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK 110
V G IG+ T V+ AV+ GD S Y +GK ++E V+I+ ++G
Sbjct: 14 YVIGDVVIGELTSVWHYAVIRGDNDSIY---------IGKYSNVQENVSIH---TDHGYP 61
Query: 111 TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKY 170
T +GD + ++ V H K+GN +++ ++ + D V+ G G+ V I Y
Sbjct: 62 TEIGDY-VTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDY 120
Query: 171 AFIGGMTGVV 180
+ + G+ V
Sbjct: 121 SLVLGVPAKV 130
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 48.0 bits (114), Expect = 3e-06
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD 73
++ GA IGP +LIGP+ +G V IG GVE I + ++ IG + +++G +
Sbjct: 262 VVIGPGAKIGPGALIGPYTVIGEGVTIGNGVE-IKNSIIMDNVVIGHGS-YIGDSIIGEN 319
Query: 74 TQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113
+ +G ++++G I GV + G+V G+
Sbjct: 320 CKIGASLIIG-DVVIGINSEILPGVVVGPGSVVESGEIED 358
Score = 42.6 bits (100), Expect = 1e-04
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 22/132 (16%)
Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66
+I A + VIGP + IGP +G IG GV I + V + I D +
Sbjct: 249 PVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVT-IGNGVEIKNSIIMDNVVIGH 307
Query: 67 MAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVA 126
+ +G ++G+ C I + I G ++G N+ L V
Sbjct: 308 GSYIGDS-------------IIGENCKIGASLII--------GDVVIGINSEILPGVVVG 346
Query: 127 HDCKLGNGIVLS 138
+ +G +
Sbjct: 347 PGSVVESGEIED 358
Score = 36.5 bits (84), Expect = 0.008
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 34/142 (23%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
I ++ A I +IGP +IG G + + V+ IG+ ++
Sbjct: 245 PIEEPVVIIRSAYIIGPVVIGPGA------KIGPGALIGPYTVIGEGVTIGNGVEI---- 294
Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD 128
K +I + V I G+ Y G +I+G+N A+ + D
Sbjct: 295 ---------------------KNSIIMDNVVIGHGS--YIGDSIIGENCKIGASLII-GD 330
Query: 129 CKLGNGIVLSNNVMIAGHVIVD 150
+G + V++ +V+
Sbjct: 331 VVIGINSEILPGVVVGPGSVVE 352
Score = 29.2 bits (65), Expect = 1.2
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 93 VIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDR 152
I E V I R G I G + + +G G+ + N V I +I+D+
Sbjct: 245 PIEEPVVIIRSAYIIGPVVI-GPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNV 303
Query: 153 VVFGG----GSAVHQFTRIGKYAFIG 174
V+ G S + + +IG IG
Sbjct: 304 VIGHGSYIGDSIIGENCKIGASLIIG 329
>gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 47.1 bits (112), Expect = 5e-06
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 50 CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG 109
V G +IG ++P AVL GD + + +G + I++GV I+ + G
Sbjct: 24 ATVIGDVRIGAGVSIWPGAVLRGDVEP---------IRIGARTNIQDGVVIH---ADPGY 71
Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169
+GD+ + V H C +G+ +++ + ++ D + G G+ V I
Sbjct: 72 PVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130
Query: 170 YAFIGG 175
+ + G
Sbjct: 131 GSLVVG 136
Score = 27.5 bits (61), Expect = 4.1
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62
+G++ I A+V G IG N LIG V IG G + + +V +I +
Sbjct: 75 IGDDVTIGHGAVVH-GCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGS 132
>gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 46.5 bits (110), Expect = 8e-06
Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
I P A+V GA I +++ P S V IGAG G+ T V A
Sbjct: 111 IVPGAIVRLGAYIAKGTVVMP----ESFVNIGAG--------------TGEGTMVDGRAS 152
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK--TIVGDNNFFLANSHVAH 127
+G Q VGK I G +I G +E I+GDN ANS V
Sbjct: 153 VGSCAQ------------VGKNSHIGGGASIG-GVLEPLQANPVIIGDNCLIGANSEVVE 199
Query: 128 DCKLGNGIVLSNNVMIAGHVIVDDRV 153
+G+G V++ V I + DRV
Sbjct: 200 GVIVGDGCVVAAGVFITQDTKIYDRV 225
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH
trimer..
Length = 193
Score = 43.9 bits (105), Expect = 4e-05
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 54/185 (29%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCV-----VAGKTKIG 59
G + +I P ++E VIG + +IGP C + IG GV + + V + +G
Sbjct: 19 GVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVG 77
Query: 60 DFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----------------- 102
F + P VLG NFV KK I EG N
Sbjct: 78 PFAHLRPGTVLGEGV--HIGNFVEI-----KKSTIGEGSKANHLSYLGDAEIGEGVNIGA 130
Query: 103 GTV--EYGGK----TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFG 156
GT+ Y G T++GDN F + SN+ ++A V + D
Sbjct: 131 GTITCNYDGVNKHRTVIGDNVF-----------------IGSNSQLVAP-VTIGDGATIA 172
Query: 157 GGSAV 161
GS +
Sbjct: 173 AGSTI 177
Score = 38.9 bits (92), Expect = 0.001
Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 40/162 (24%)
Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93
+ +VEIG V + ++ GKT IG+ + P V+
Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-------------------ST 52
Query: 94 IREGVTINRGTVEY----GGKTIVGDNNFFLANSHVAHDCKLGN-----GIVLSNNVMIA 144
I +GV I +V G VG + + +GN +
Sbjct: 53 IGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKAN 112
Query: 145 -----GHVIVDDRVVFGGGS------AVHQF-TRIGKYAFIG 174
G + + V G G+ V++ T IG FIG
Sbjct: 113 HLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIG 154
>gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 43.3 bits (101), Expect = 6e-05
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 86 LLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA 144
L +G C I V I + G +VG N NSH ++ A
Sbjct: 68 LTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-----VTANIGALVGA 122
Query: 145 GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
G V + + V G G+ + IG+ A IG + V DV PYGI+ GNP
Sbjct: 123 GPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNP 171
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity..
Length = 119
Score = 43.3 bits (103), Expect = 7e-05
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD-----TQS 76
IG N +IG + ++V+IG V++ S+ + I D + P V D
Sbjct: 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60
Query: 77 KYHNFVGTEL----LVGKKCVIREGVTINRGTV 105
+ GT + +G I GVTI +
Sbjct: 61 RKWELKGTTVKRGASIGANATILPGVTIGEYAL 93
Score = 40.9 bits (97), Expect = 4e-04
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 113 VGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV------VF----------- 155
+GDN N + +D K+G+ + + +NV I V ++D V VF
Sbjct: 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60
Query: 156 ----------------GGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRG 198
G + + IG+YA +G V DV PY ++ GNP + G
Sbjct: 61 RKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119
Score = 28.2 bits (64), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 15 LVEEGAVIGPNSLIGPFCCVGSEVEIGAG 43
V+ GA IG N+ I P +G +GAG
Sbjct: 69 TVKRGASIGANATILPGVTIGEYALVGAG 97
>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
ribosomal structure and biogenesis].
Length = 673
Score = 42.2 bits (99), Expect = 2e-04
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 35 GSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVI 94
+V + V + ++ V+ TKIG +K+ +V+G + + N + I
Sbjct: 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISN-SVIGANCRIG-SNVRIKNSFIWNNVTI 376
Query: 95 REGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV 149
+ I I+ D+ + + LG G+V+ N ++ + V
Sbjct: 377 GDNCRI--------DHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423
Score = 34.1 bits (78), Expect = 0.044
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEI-----GAGVEL-----ISHCVVAGKTKIGDFTKVF 65
+ G+ I NS+IG C +GS V I V + I H ++ KIG+ +
Sbjct: 342 IGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK 400
Query: 66 PMAVLG 71
P +VLG
Sbjct: 401 PGSVLG 406
Score = 32.2 bits (73), Expect = 0.14
Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 32/176 (18%)
Query: 31 FCCVGSEVEIGAGVELISHCVVAGKTKIGDFT-KVFPMAVLGGDTQSKYHNF---VGTEL 86
V S ++ A VE + + K I +T + P G+ ++
Sbjct: 263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDV 322
Query: 87 LVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146
++ ++ V I G T +G + ++NS + +C++G+ + + N+ +
Sbjct: 323 VLSHSVIVGANVVI-------GAGTKIGSGSK-ISNSVIGANCRIGSNVRIKNSFIWNN- 373
Query: 147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVV 202
V G + +A I + I PG++ G VV
Sbjct: 374 ------VTIGDNCRID-------HAIICDDVKIGEGAIL------KPGSVLGFGVV 410
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain..
Length = 153
Score = 41.2 bits (98), Expect = 3e-04
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 50 CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG 109
V G +G+ + V+ AVL GD + +G++ I++G ++ V+ G
Sbjct: 12 ATVIGDVTLGEGSSVWFGAVLRGDVNP---------IRIGERTNIQDGSVLH---VDPGY 59
Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169
TI+GDN + + H C +G+ ++ +I ++ + GS V I
Sbjct: 60 PTIIGDNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPP 118
Query: 170 YAFIGG 175
+ + G
Sbjct: 119 GSLVAG 124
Score = 26.6 bits (60), Expect = 7.9
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60
G+ ++H G IG N LIG + IG G + + +V I
Sbjct: 70 GHGAVLH-------GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPP 118
>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones].
Length = 407
Score = 39.9 bits (93), Expect = 8e-04
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 29/143 (20%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A V A IGPN IG V +G GV L ++ +I + V
Sbjct: 291 IHPSAKVHPTAKIGPNVSIGA------NVRVGPGVRLRE-SIILDDAEIEENAVVL---- 339
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129
H+ +G + +G+ + + + TI+G A+ V +
Sbjct: 340 ---------HSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILG------ADVSVEDEV 384
Query: 130 KLGNGIVLSN---NVMIAGHVIV 149
+ N IVL N NV + +I+
Sbjct: 385 IVLNSIVLPNKELNVSVQDEIIL 407
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form..
Length = 109
Score = 39.4 bits (93), Expect = 0.001
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 88 VGKKCVIREGVTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146
+G I G I+ G + G ++G N ++H D + +
Sbjct: 4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDD-----PERPIEQGVTSAP 58
Query: 147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
+++ D V G + IG A +G + V DV P I+ GNP
Sbjct: 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNP 105
Score = 29.0 bits (66), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 21 VIGPNSLIGPFCCV--GSEVEIGAGVELISHCV--VAGKTKIGDFTKVFPMAVLGGDTQS 76
IG N IGP C + G + IG V LI V I D + V
Sbjct: 3 SIGDNVYIGPGCVISAGGGITIGDNV-LIGPNVTIYDHNHDIDDPERPIEQGVTSAPI-- 59
Query: 77 KYHNFVGTELLVGKKCVIREGVTINRGTV 105
+G ++ +G VI GVTI G V
Sbjct: 60 ----VIGDDVWIGANVVILPGVTIGDGAV 84
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms..
Length = 78
Score = 38.0 bits (89), Expect = 0.002
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVG--------SEVEIGAGVELISHCVVA 53
+G IHP A++ VIG N IGP +G + IG VE+ ++ V+
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 54 GKTKIGDFTKVFPMAVLG 71
G KIGD + AV+
Sbjct: 61 GGVKIGDNAVIGAGAVVT 78
Score = 36.5 bits (85), Expect = 0.008
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 38 VEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREG 97
V IG GV++ V+ G IGD + P AV+G T +I +
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA----------ATGPNEKNPTIIGDN 50
Query: 98 VTINRGTVEYGGKTIVGDNNFFLANSHVA 126
V I V G +GDN A + V
Sbjct: 51 VEIGANAV-IHGGVKIGDNAVIGAGAVVT 78
Score = 34.1 bits (79), Expect = 0.045
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 57 KIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTI-NRGTVEYGGKTIVGD 115
IG+ K+ P AV+ G +G I G I TI+GD
Sbjct: 2 FIGEGVKIHPKAVIRGPVV------------IGDNVNIGPGAVIGAATGPNEKNPTIIGD 49
Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIA 144
N AN+ + K+G+ V+ ++
Sbjct: 50 NVEIGANAVIHGGVKIGDNAVIGAGAVVT 78
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain..
Length = 167
Score = 37.2 bits (87), Expect = 0.005
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 24/119 (20%)
Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTIN--RGT-VEY 107
VV G IGD V P A + D GT +++G I++GV I+ G V
Sbjct: 16 VVIGDVIIGDNVFVGPGASIRAD--------EGTPIIIGANVNIQDGVVIHALEGYSVWI 67
Query: 108 GGKT------------IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVV 154
G +GDN F S V + K+G+ V+ +N ++ G I R V
Sbjct: 68 GKNVSIAHGAIVHGPAYIGDNCFIGFRS-VVFNAKVGDNCVIGHNAVVDGVEIPPGRYV 125
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity..
Length = 161
Score = 36.0 bits (84), Expect = 0.011
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 11/135 (8%)
Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK 110
V+ GKT I ++ GD + +G ++ + CVIR V +
Sbjct: 23 VLNGKTII------QSDVIIRGDLATVS---IGRYCILSEGCVIRPPFKKFSKGVAFFPL 73
Query: 111 TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKY 170
I GD F N V + ++G+ + + N +I I+ D V G+ V T I Y
Sbjct: 74 HI-GDYVFIGENC-VVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPY 131
Query: 171 AFIGGMTGVVHDVIP 185
+ + G +P
Sbjct: 132 SVVSGRPARFIGELP 146
Score = 28.7 bits (65), Expect = 1.7
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62
+G+ I +V A IG IG C +G I V+++ VV T I ++
Sbjct: 74 HIGDYVFIGENCVVN-AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132
Query: 63 KV 64
V
Sbjct: 133 VV 134
Score = 27.6 bits (62), Expect = 3.8
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 28 IGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKY---HNFVGT 84
IG +C + I + S V IGD+ + V + + +G
Sbjct: 45 IGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCV----VNAAQIGSYVHIGK 100
Query: 85 ELLVGKKCVIREGVTINRGTV 105
++G++C+I++ V I GTV
Sbjct: 101 NCVIGRRCIIKDCVKILDGTV 121
>gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 36.0 bits (83), Expect = 0.011
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 92 CVIREGVTINRG-TVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG--HVI 148
I G I RG +++G ++G+ + + D + +G+ L +G H
Sbjct: 68 IEIHPGAKIGRGLFIDHGTGVVIGET------AVIGDDVTIYHGVTLGGTGKESGKRHPT 121
Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPG 194
+ + V G G+ + IG A IG + V+ DV P + G P
Sbjct: 122 IGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPA 167
Score = 28.3 bits (63), Expect = 2.4
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPF--CCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66
+I A++ + I +G IG GV + + + G +IGD K+
Sbjct: 89 VIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGA 148
Query: 67 MAV 69
+V
Sbjct: 149 GSV 151
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 21 VIGPNSLIGPFCCVGSEVEIGAGVELISHCVV 52
IG IG + +EIG ++ + VV
Sbjct: 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs..
Length = 139
Score = 35.4 bits (82), Expect = 0.018
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 33/146 (22%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
+ P A++ +GA IGP +++ S V IGA + + T V A
Sbjct: 3 RVPPGAIIRDGAFIGPGAVLMM----PSYVNIGA--------------YVDEGTMVDSWA 44
Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKT--IVGDNNFFLANSHVA 126
+G Q +GK + G I G +E T I+ D+ F AN V
Sbjct: 45 TVGSCAQ------------IGKNVHLSAGAVIG-GVLEPLQATPVIIEDDVFIGANCEVV 91
Query: 127 HDCKLGNGIVLSNNVMIAGHVIVDDR 152
+G G VL+ V++ + DR
Sbjct: 92 EGVIVGKGAVLAAGVVLTQSTPIYDR 117
Score = 33.9 bits (78), Expect = 0.054
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 88 VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG-- 145
+G V+ +N G V + + + V ++G + LS +I G
Sbjct: 16 IGPGAVLMMPSYVNIGAY-------VDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL 68
Query: 146 ------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGG 175
VI++D V G V + +GK A +
Sbjct: 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAA 104
Score = 33.1 bits (76), Expect = 0.089
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
+G ++ + V GA + +++ + VGS +IG V L + V+ G
Sbjct: 16 IGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGG--------- 66
Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVG 114
VL + + ++ +G C + EGV + +G V G +
Sbjct: 67 -----VL--EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110
Score = 26.6 bits (59), Expect = 7.9
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
++E+ IG N + VG + AGV V+ T I D
Sbjct: 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGV------VLTQSTPIYDRET 119
>gnl|CDD|38331 KOG3121, KOG3121, KOG3121, Dynactin, subunit p25 [Cytoskeleton].
Length = 184
Score = 34.2 bits (78), Expect = 0.039
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 7 NPIIHPLALVEEGAVIG---PNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
N +++ +VEEG +I N IG +C + S I +++ S IGD
Sbjct: 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVF 92
Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105
+ V+ Y +G ++G++CV+++ I TV
Sbjct: 93 IEEECVVNAAQIGSY-VHLGKNAVIGRRCVLKDCCRILDDTV 133
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain..
Length = 101
Score = 34.0 bits (79), Expect = 0.042
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 92 CVIREGVTINRGTV-EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA--GHVI 148
I G I G ++G ++G + + +C + G+ L H
Sbjct: 3 IDIHPGAKIGPGLFIDHGTGIVIG------ETAVIGDNCTIYQGVTLGGKGKGGGKRHPT 56
Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
+ D VV G G+ + IG IG V DV + G P
Sbjct: 57 IGDNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101
Score = 32.0 bits (74), Expect = 0.20
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 88 VGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146
+G C I +GVT+ +G +GDN A + + LGN I + +NV I +
Sbjct: 31 IGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKI-----LGN-ITIGDNVKIGAN 84
Query: 147 VIV-----DDRVVFG 156
+V + V G
Sbjct: 85 AVVTKDVPANSTVVG 99
Score = 28.9 bits (66), Expect = 1.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 9 IIHPLALV-EEGAVIGPNSLIGPFCCVGSEVE--------IGAGVELISHCVVAGKTKIG 59
I H +V E AVIG N I +G + + IG V + + + G IG
Sbjct: 17 IDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIG 76
Query: 60 DFTKVFPMAVL 70
D K+ AV+
Sbjct: 77 DNVKIGANAVV 87
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose
pyrophosphorylase, it contains an N-terminal catalytic
domain that resembles a dinucleotide-binding Rossmann
fold and a C-terminal LbH fold domain, presumably with
4 turns, each containing three imperfect tandem repeats
of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 80
Score = 34.1 bits (78), Expect = 0.044
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 LVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60
L++ A IG + IGP +G V IG GV L CV+ + + D
Sbjct: 1 LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRL-QRCVILSNSTVRD 45
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity..
Length = 155
Score = 33.9 bits (78), Expect = 0.051
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 8 PIIHPLALVEEGAVIGPNSLIGPFCCVG---------SEVEIGAGVELISHCVVAG---- 54
P++ P + V AV+ + +IG C +G + I G + +CV+ G
Sbjct: 1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQ 60
Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVG 114
T + + + A+L G T +G LVG V+ +G I G ++IVG
Sbjct: 61 DTVLEENGHIGHGAILHGCT-------IGRNALVGMNAVVMDGAVI-------GEESIVG 106
Query: 115 DNNFFLANSHV 125
F A + +
Sbjct: 107 AMAFVKAGTVI 117
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 169
Score = 33.2 bits (77), Expect = 0.071
Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 39/137 (28%)
Query: 85 ELL--VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKL--GNGIVLSNN 140
EL VG+ I +YG +GDN F AN +C + + + +N
Sbjct: 40 ELFGSVGENVYIEPPFH-----CDYGYNIHIGDN--FYAN----FNCTILDVAPVTIGDN 88
Query: 141 VMI--------AGH----------------VIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176
V+I AGH + + D V GGG + IG + IG
Sbjct: 89 VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAG 148
Query: 177 TGVVHDVIPYGILNGNP 193
+ V D+ + GNP
Sbjct: 149 SVVTKDIPANVVAAGNP 165
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases
in that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 163
Score = 32.6 bits (75), Expect = 0.12
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 9 IIHPLALVEEGAV------IGPNSLIGPFC------CVGSEVEIGAGVELISHCVVAGKT 56
I A+V GA IG IGP +G +G VE + + ++ T
Sbjct: 19 WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVE-VKNSIIMDGT 77
Query: 57 KIGDFTKV 64
K+ V
Sbjct: 78 KVPHLNYV 85
Score = 30.6 bits (70), Expect = 0.42
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62
+ I + EGA++ + I +G EIG + + V+ +G+
Sbjct: 7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSV 66
Query: 63 KVFPMAVLGGDTQSKYHNFVGTELLVGKKC 92
+V +++ T+ + N+VG +L G+
Sbjct: 67 EV-KNSIIMDGTKVPHLNYVGDSVL-GENV 94
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 101
Score = 32.6 bits (75), Expect = 0.12
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 17 EEGAV-IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV---FPMAVLGG 72
E+G + IG +++I PF + V IG G + + G T IG K+ +++ G
Sbjct: 8 EDGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEG 67
Query: 73 DTQSKYHNFVG 83
+ ++ F+G
Sbjct: 68 YSNKQHDGFLG 78
Score = 28.8 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSL------------IGPFCCVGSEVE 39
G + +I P A++E IGP S IGP C +G EVE
Sbjct: 15 GKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVE 61
>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
protein product of the E. coli wcaF gene and similar
proteins. WcaF is part of the gene cluster responsible
for the biosynthesis of the extracellular polysaccharide
colanic acid. The wcaF protein is predicted to contain a
left-handed parallel beta-helix (LbH) domain encoded by
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Many are trimeric in their
active forms..
Length = 107
Score = 32.2 bits (74), Expect = 0.17
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 86 LLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSH----VAHDCKLGNGIVLSNN 140
L +G I EGV I N V G + + SH A IV+ +
Sbjct: 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAP-IVIGDG 62
Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR 197
+A V G G IG+ A +G + VV D+ + + GNP
Sbjct: 63 AWVAAEAFV------GPG------VTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107
Score = 26.8 bits (60), Expect = 7.1
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLI--GPFCCVGS-------------EVEIGAGVELISH 49
G I+ LA V IG ++ I G + C GS + IG G + +
Sbjct: 13 GEGVWIYNLAPV----TIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAE 68
Query: 50 CVVAGKTKIGDFTKVFPMAVLGGD 73
V IG+ V +V+ D
Sbjct: 69 AFVGPGVTIGEGAVVGARSVVVRD 92
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate
adenylyltransferase, mannose-1-phosphate
guanylyltransferase, and the eukaryotic translation
initiation factor eIF-2B subunits, epsilon and gamma.
Most members of this family contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold, followed by a LbH fold domain with at
least 4 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the
C-terminus. Proteins containing hexapeptide repeats are
often enzymes showing acyltransferase activity..
Length = 79
Score = 32.2 bits (74), Expect = 0.17
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSE-----------VEIGAGVELISHCVVAGKTK 57
+I ++ E A+I NS+IG +G V IGA I ++
Sbjct: 1 LIGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSV-IVDSIIGDNAV 58
Query: 58 IGDFTKVFPMAVLGGDT 74
IG+ +V + ++G D
Sbjct: 59 IGENVRVVNLCIIGDDV 75
>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
structure and biogenesis].
Length = 433
Score = 31.5 bits (71), Expect = 0.30
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 40 IGAGVELISH-CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV 98
V L+ +V T+IG+ + + + +G+ +G++ + +
Sbjct: 324 YVKKVALVGADSIVGDNTQIGENSNI-------------KRSVIGSNCDIGERVKVANSI 370
Query: 99 TINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGG 157
++ V G + NS + ++G+G L N +I +V+ + GG
Sbjct: 371 LMDNVVVGDGVN---------IENSIIGMGAQIGSGSKLK-NCIIGPGYVVEAKGKHGG 419
Score = 28.4 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 20 AVIGPNSLIGPFCCVGSE-----VEIGAGVELISHCVVAGKTKIGDFTKV 64
+VIG N IG V + V +G GV I + ++ +IG +K+
Sbjct: 352 SVIGSNCDIGERVKVANSILMDNVVVGDGVN-IENSIIGMGAQIGSGSKL 400
>gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid
transport and metabolism].
Length = 269
Score = 30.8 bits (69), Expect = 0.43
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 94 IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV 153
I +G+ ++ T G+T V +N + H LG + H + D V
Sbjct: 157 IGKGILLDHATGVVIGETAVVGDNV-----SILHPVTLGG----TGKGSGDRHPKIGDNV 207
Query: 154 VFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGV 199
+ G G + IG+ A I + V+ DV P + GNP L G
Sbjct: 208 LIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGK 253
>gnl|CDD|32367 COG2184, Fic, Protein involved in cell division [Cell division and
chromosome partitioning].
Length = 201
Score = 30.7 bits (69), Expect = 0.46
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 203 AMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVS 244
+ +RA+++Q+FQ IY+ AG R +S
Sbjct: 47 IESGPRKGGLDLAHLRAIHRQLFQD---IYEWAGQFRTVGIS 85
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients..
Length = 145
Score = 29.0 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 21 VIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHN 80
V G IG FC + V+IG G H D+ +P + GG+ +
Sbjct: 17 VGGDKLSIGKFCSIAPGVKIGLGGN---HPT--------DWVSTYPFYIFGGEWEDDAKF 65
Query: 81 F---------VGTELLVGKKCVIREGVTINRGTV 105
+G ++ +G I GVTI G V
Sbjct: 66 DDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAV 99
Score = 26.7 bits (60), Expect = 6.1
Identities = 39/170 (22%), Positives = 56/170 (32%), Gaps = 47/170 (27%)
Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE-LLVGKKCVIREGVTINRGT-------VE 106
+GD++ S VG + L +GK C I GV I G
Sbjct: 1 NISVGDYSYG-----------SGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVST 49
Query: 107 YGGKTIV--GDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF 164
Y +++ + D +GN + + + I V + D V G AV
Sbjct: 50 YPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAG-AV--- 105
Query: 165 TRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTI 214
V DV PY I+ GNP V+ R F +TI
Sbjct: 106 --------------VTKDVPPYAIVGGNPA-----KVIRYR---FDEETI 133
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine
nucleotide exchange factor (GEF) composed of five
different subunits (alpha, beta, gamma, delta and
epsilon). eIF2B is important for regenerating GTP-bound
eIF2 during the initiation process. This event is
obligatory for eIF2 to bind initiator methionyl-tRNA,
forming the ternary initiation complex. The eIF-2B
epsilon subunit contains an N-terminal domain that
resembles a dinucleotide-binding Rossmann fold, a
central LbH domain containing 4 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal
domain of unknown function that is present in eIF-4
gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma
subunits form the catalytic subcomplex of eIF-2B, which
binds eIF2 and catalyzes guanine nucleotide exchange..
Length = 79
Score = 28.7 bits (65), Expect = 1.9
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 25 NSLIGPFCCVGSEVE-----------IGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71
NS+IG C +G V I G I H +VA IG + P +++
Sbjct: 16 NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCT-IHHSIVADGAVIGKGCTIPPGSLIS 72
>gnl|CDD|176810 cd08976, BaFpgNei_N_4, Uncharacterized bacterial subgroup of the
N-terminal domain of Fpg (formamidopyrimidine-DNA
glycosylase, MutM)_Nei (endonuclease VIII)
base-excision repair DNA glycosylases. This family is
an uncharacterized bacterial subgroup of the FpgNei_N
domain superfamily. DNA glycosylases maintain genome
integrity by recognizing base lesions created by
ionizing radiation, alkylating or oxidizing agents, and
endogenous reactive oxygen species. They initiate the
base-excision repair process, which is completed with
the help of enzymes such as phosphodiesterases, AP
endonucleases, DNA polymerases and DNA ligases. DNA
glycosylases cleave the N-glycosyl bond between the
sugar and the damaged base, creating an AP
(apurinic/apyrimidinic) site. Most FpgNei DNA
glycosylases use their N-terminal proline residue as the
key catalytic nucleophile, and the reaction proceeds via
a Schiff base intermediate. This N-terminal proline is
conserved in this family. Escherichia coli Fpg prefers
8-oxo-7,8-dihydroguanine (8-oxoG) and oxidized purines
and Escherichia coli Nei recognizes oxidized
pyrimidines. However, neither Escherichia coli Fpg or
Nei belong to this family. In addition to this
BaFpgNei_N_4 domain, most enzymes belonging to this
family contain a helix-two turn-helix (H2TH) domain and
a zinc-finger motif.
Length = 117
Score = 28.5 bits (64), Expect = 2.3
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 21/57 (36%)
Query: 146 HVIVDDRVVFGGGSAV-------HQFT---RIGKYAFIG-----------GMTGVVH 181
V V D + G A FT RIGKY F+ GMTG +
Sbjct: 24 EVEVGDDKILGEPKATLREVLEGRTFTETHRIGKYLFLKTKEGGWLVMHFGMTGKLD 80
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the
addition of galactose or glucose residues to the
lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of
the bacterial cell surface. The members of this family
of glycosyltransferases catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface. The enzymes exhibit broad substrate
specificities. The known functions found in this family
include: Alpha-1,4-galactosyltransferase,
LOS-alpha-1,3-D-galactosyltransferase,
UDP-glucose:(galactosyl) LPS
alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl)
LPS alpha1,2-galactosyltransferase, and
UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase.
Alpha-1,4-galactosyltransferase from N. meningitidis
adds an alpha-galactose from UDP-Gal (the donor) to a
terminal lactose (the acceptor) of the LOS structure of
outer membrane. LOSs are virulence factors that enable
the organism to evade the immune system of host cells.
In E. coli, the three alpha-1,2-glycosyltransferases,
that are involved in the synthesis of the outer core
region of the LPS, are all members of this family. The
three enzymes share 40 % of sequence identity, but have
different sugar donor or acceptor specificities,
representing the structural diversity of LPS.
Length = 248
Score = 27.9 bits (63), Expect = 2.8
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 20/66 (30%)
Query: 199 VNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFAD 258
+N+ R + + LI+ Y D Q DI+N + D
Sbjct: 159 INLKKWREENITEKLLELIKE-YGGRLIYPD-----------Q--------DILNAVLKD 198
Query: 259 RKRPLS 264
+ L
Sbjct: 199 KILYLP 204
>gnl|CDD|31975 COG1790, COG1790, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 209
Score = 27.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 8 PIIHPLALVEEGAVIGPNSLIG-----PFCCVGSEVE 39
P + P+ E G + IG P CCVGS +E
Sbjct: 69 PALDPMISTELGVYRLDDEEIGKLLGYPECCVGSFIE 105
>gnl|CDD|144136 pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.
Length = 131
Score = 27.4 bits (62), Expect = 4.1
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 206 RAGFSRDTIH-LIRAVYKQIF 225
R S + + +IRA Y+Q+F
Sbjct: 2 RPNSSEEELEEVIRAAYRQVF 22
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 164
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 113 VGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGS 159
+G+NN F + S V + + +G ++ + I+ + V G
Sbjct: 86 IGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132
>gnl|CDD|37795 KOG2584, KOG2584, KOG2584, Dihydroorotase and related enzymes
[Nucleotide transport and metabolism].
Length = 522
Score = 27.2 bits (60), Expect = 4.9
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 90 KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIV--LSNNVMIAGHV 147
+ V NR ++ G +V D+ F A+ +V +GI+ + N++I G V
Sbjct: 3 QNKKTSPHVASNRLLIKGG--RVVNDDQSFKADVYV------EDGIIKEVGENLIIPGGV 54
Query: 148 IVDD---RVVFGGGSAVH---QFTRIG-----------KYAFIGGMTGVVHDVIP 185
V D ++V GG H Q +G K A GG T ++ V+P
Sbjct: 55 KVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLP 109
>gnl|CDD|146770 pfam04305, DUF455, Protein of unknown function (DUF455).
Length = 250
Score = 26.8 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 192 NPGALRG-VNVVAMRRAGFSRDTI 214
GAL+ N A R+AGFS D +
Sbjct: 225 FRGALKPPFNEEARRKAGFSEDEL 248
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,324,507
Number of extensions: 182108
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 123
Length of query: 271
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,275,709
Effective search space: 765351911
Effective search space used: 765351911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)