RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.. Length = 254 Score = 337 bits (867), Expect = 2e-93 Identities = 113/254 (44%), Positives = 160/254 (62%), Gaps = 1/254 (0%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A+V+ GA IG N IGPFC +G VEIG G + SH V+ G T IG ++FP A Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129 +G Q + T L +G IRE VTI+RGT + GG T +G+NN +A HVAHDC Sbjct: 62 IGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDC 121 Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189 +GN ++L+NN +AGHV + D + GG SAVHQF RIG++A +GG +GVV DV PY I Sbjct: 122 VIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA 181 Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249 GN LRG+N+V ++R GFSR+ I ++ Y+ +++ G ++ + + E+ PEV Sbjct: 182 AGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYRSGLTLEEALEELEEEAPDSPEVE 241 Query: 250 DIINFIFADRKRPL 263 ++++FI KR + Sbjct: 242 ELVDFI-RSSKRGI 254 >gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein]. Length = 260 Score = 312 bits (800), Expect = 8e-86 Identities = 121/255 (47%), Positives = 162/255 (63%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A++E GA IG + IGPFC +G VEIG G L SH VV G T IG ++FP A Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFAS 65 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129 +G D Q + T L++G IRE VTI+RGTV+ GG T +GDNN +A +HVAHDC Sbjct: 66 IGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDC 125 Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189 +GN +L+NN +AGHV V D + GG SAVHQF RIG +A IGG++ V DV PY I Sbjct: 126 VIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIA 185 Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249 +GN LRG+N+V ++R GFSR+ IH +R YK +F+ G ++ + I E+ PEV Sbjct: 186 SGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADNPEVK 245 Query: 250 DIINFIFADRKRPLS 264 + I+FI + + + Sbjct: 246 EFIDFIASSSRGIIR 260 >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).. Length = 205 Score = 105 bits (266), Expect = 1e-23 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 12/197 (6%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64 G N I P A++ EG VIG +IGP +G V IG + + + IGD + Sbjct: 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVII 64 Query: 65 FPMAVLGGD------TQSKYHNF--VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDN 116 AV+G D + +G +++G I TI+RG + G T++GD Sbjct: 65 HSGAVIGSDGFGFAPDGGGWVKIPQLGG-VIIGDDVEIGANTTIDRGAL---GDTVIGDG 120 Query: 117 NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176 +AH+ ++G +++ V IAG + D V+ GG + IG IG Sbjct: 121 TKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG 180 Query: 177 TGVVHDVIPYGILNGNP 193 +GV V P ++G P Sbjct: 181 SGVTSIVPPGEYVSGTP 197 Score = 29.3 bits (67), Expect = 1.0 Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 112 IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169 +G+N N+ + +G+G+V+ V+I V++ D V +++ IG Sbjct: 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60 >gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]. Length = 338 Score = 104 bits (261), Expect = 3e-23 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 10/200 (5%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62 +G N I P ++ G VIG N +IG +G V+IG G + + + IG+ Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172 Query: 63 KVFPMAVLGGDTQSKYHNFVGTELL-------VGKKCVIREGVTINRGTVEYGGKTIVGD 115 + AV+G D +G + +G I TI+RG + T++G+ Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGAL---DDTVIGE 229 Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGG 175 + H+ ++G +++ V IAG V + V+ GG + IG IG Sbjct: 230 GVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGA 289 Query: 176 MTGVVHDVIPYGILNGNPGA 195 +GV+ + G G P Sbjct: 290 RSGVMASITEPGYSGGIPAQ 309 Score = 31.8 bits (72), Expect = 0.22 Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61 + +G I L + IG + +I + V+IG V + +AG +IGD Sbjct: 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDG 284 Query: 62 TKVFPMAVLGGD 73 + + + Sbjct: 285 VTIGARSGVMAS 296 >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.. Length = 197 Score = 74.1 bits (183), Expect = 4e-14 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 81 FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNN 140 V ++G+ CVI G IN +GDN + + HDC +G+ + ++ Sbjct: 92 VVSPSAVIGEGCVIMAGAVINPDAR-------IGDNVIINTGAVIGHDCVIGDFVHIAPG 144 Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 V+++G V + + G G+ + Q IG A IG V DV ++ GNP Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197 Score = 61.7 bits (151), Expect = 2e-10 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 +IHP A+V AVIG +I + + IG V + + V+ IGDF + P Sbjct: 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGV 145 Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105 VL G +G +G I +GVTI G + Sbjct: 146 VLSGGVT------IGEGAFIGAGATIIQGVTIGAGAI 176 Score = 38.6 bits (91), Expect = 0.002 Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61 +R+G+N II+ A++ VIG I P + V IG G + + + IG Sbjct: 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174 Query: 62 TKV 64 + Sbjct: 175 AII 177 >gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]. Length = 460 Score = 55.2 bits (133), Expect = 2e-08 Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 31/170 (18%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCV-----VAGKTKIG 59 G + +I P ++E VIG N +IGP V + IG + ++ V V +G Sbjct: 272 GRDVVIEPNVILEGNTVIGDNVVIGPG-SVIKDSVIGDNAVIKAYSVIEGSTVGEGATVG 330 Query: 60 DFTKVFPMAVLGGDTQSKYHNFV---GTELLVGKK---------CVIREGVTINRG--TV 105 F ++ P AVLG D NFV + G K I E V I G T Sbjct: 331 PFARLRPGAVLGAD--VHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITC 388 Query: 106 EYGG----KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151 Y G KTI+GDN F +NS + +G+G ++ AG I D Sbjct: 389 NYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIA-----AGSTITKD 433 Score = 39.0 bits (91), Expect = 0.001 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 40/168 (23%) Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93 + +VEIG V + + ++ G T IGD + P +V+ K V Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVI-------------------KDSV 305 Query: 94 IREGVTINRGTV----EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVM----IAG 145 I + I +V G VG + + D +GN + + + AG Sbjct: 306 IGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAG 365 Query: 146 HVI------VDDRVVFGGGSAVHQF-------TRIGKYAFIGGMTGVV 180 H+ + + V G G+ + T IG FIG + +V Sbjct: 366 HLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV 413 Score = 35.9 bits (83), Expect = 0.011 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%) Query: 95 REGVTIN-------RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHV 147 GVT+ RG VE G ++ N N+ + + +G G V+ ++V+ V Sbjct: 252 LAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAV 311 Query: 148 IVDDRVVFGGGSAVHQFTRIGKYAFI 173 I V+ GS V + +G +A + Sbjct: 312 IKAYSVIE--GSTVGEGATVGPFARL 335 >gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 371 Score = 51.0 bits (122), Expect = 4e-07 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL----------ISHCV 51 S++ N ++ +A + E IGPN +IGP + V + L IS + Sbjct: 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSI 318 Query: 52 VAGKTKIGDFTKVFPMAVLGGDT 74 V IG + ++ AVLG + Sbjct: 319 VGWNVPIGIWARIDKNAVLGKNV 341 Score = 33.7 bits (77), Expect = 0.053 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 82 VGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNV 141 +G +++G + I +GV + T+ G + + +++S V + +G + N Sbjct: 279 IGPNVVIGPRVRIEDGVRLQDSTI-LGADYY--ETHSEISSSIVGWNVPIGIWARIDKNA 335 Query: 142 MIAGHVIVDDRVVFGGGSAVH 162 ++ +VIV D GS + Sbjct: 336 VLGKNVIVADEDYVNEGSGLP 356 >gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.. Length = 154 Score = 49.1 bits (117), Expect = 1e-06 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 13/130 (10%) Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK 110 V G IG+ T V+ AV+ GD S Y +GK ++E V+I+ ++G Sbjct: 14 YVIGDVVIGELTSVWHYAVIRGDNDSIY---------IGKYSNVQENVSIH---TDHGYP 61 Query: 111 TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKY 170 T +GD + ++ V H K+GN +++ ++ + D V+ G G+ V I Y Sbjct: 62 TEIGDY-VTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDY 120 Query: 171 AFIGGMTGVV 180 + + G+ V Sbjct: 121 SLVLGVPAKV 130 >gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]. Length = 358 Score = 48.0 bits (114), Expect = 3e-06 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD 73 ++ GA IGP +LIGP+ +G V IG GVE I + ++ IG + +++G + Sbjct: 262 VVIGPGAKIGPGALIGPYTVIGEGVTIGNGVE-IKNSIIMDNVVIGHGS-YIGDSIIGEN 319 Query: 74 TQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113 + +G ++++G I GV + G+V G+ Sbjct: 320 CKIGASLIIG-DVVIGINSEILPGVVVGPGSVVESGEIED 358 Score = 42.6 bits (100), Expect = 1e-04 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 22/132 (16%) Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66 +I A + VIGP + IGP +G IG GV I + V + I D + Sbjct: 249 PVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVT-IGNGVEIKNSIIMDNVVIGH 307 Query: 67 MAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVA 126 + +G ++G+ C I + I G ++G N+ L V Sbjct: 308 GSYIGDS-------------IIGENCKIGASLII--------GDVVIGINSEILPGVVVG 346 Query: 127 HDCKLGNGIVLS 138 + +G + Sbjct: 347 PGSVVESGEIED 358 Score = 36.5 bits (84), Expect = 0.008 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 34/142 (23%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 I ++ A I +IGP +IG G + + V+ IG+ ++ Sbjct: 245 PIEEPVVIIRSAYIIGPVVIGPGA------KIGPGALIGPYTVIGEGVTIGNGVEI---- 294 Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD 128 K +I + V I G+ Y G +I+G+N A+ + D Sbjct: 295 ---------------------KNSIIMDNVVIGHGS--YIGDSIIGENCKIGASLII-GD 330 Query: 129 CKLGNGIVLSNNVMIAGHVIVD 150 +G + V++ +V+ Sbjct: 331 VVIGINSEILPGVVVGPGSVVE 352 Score = 29.2 bits (65), Expect = 1.2 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 93 VIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDR 152 I E V I R G I G + + +G G+ + N V I +I+D+ Sbjct: 245 PIEEPVVIIRSAYIIGPVVI-GPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNV 303 Query: 153 VVFGG----GSAVHQFTRIGKYAFIG 174 V+ G S + + +IG IG Sbjct: 304 VIGHGSYIGDSIIGENCKIGASLIIG 329 >gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]. Length = 176 Score = 47.1 bits (112), Expect = 5e-06 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 50 CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG 109 V G +IG ++P AVL GD + + +G + I++GV I+ + G Sbjct: 24 ATVIGDVRIGAGVSIWPGAVLRGDVEP---------IRIGARTNIQDGVVIH---ADPGY 71 Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169 +GD+ + V H C +G+ +++ + ++ D + G G+ V I Sbjct: 72 PVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130 Query: 170 YAFIGG 175 + + G Sbjct: 131 GSLVVG 136 Score = 27.5 bits (61), Expect = 4.1 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62 +G++ I A+V G IG N LIG V IG G + + +V +I + Sbjct: 75 IGDDVTIGHGAVVH-GCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGS 132 >gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]. Length = 271 Score = 46.5 bits (110), Expect = 8e-06 Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 33/146 (22%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 I P A+V GA I +++ P S V IGAG G+ T V A Sbjct: 111 IVPGAIVRLGAYIAKGTVVMP----ESFVNIGAG--------------TGEGTMVDGRAS 152 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK--TIVGDNNFFLANSHVAH 127 +G Q VGK I G +I G +E I+GDN ANS V Sbjct: 153 VGSCAQ------------VGKNSHIGGGASIG-GVLEPLQANPVIIGDNCLIGANSEVVE 199 Query: 128 DCKLGNGIVLSNNVMIAGHVIVDDRV 153 +G+G V++ V I + DRV Sbjct: 200 GVIVGDGCVVAAGVFITQDTKIYDRV 225 >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.. Length = 193 Score = 43.9 bits (105), Expect = 4e-05 Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 54/185 (29%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCV-----VAGKTKIG 59 G + +I P ++E VIG + +IGP C + IG GV + + V + +G Sbjct: 19 GVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEGAVIGNGATVG 77 Query: 60 DFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----------------- 102 F + P VLG NFV KK I EG N Sbjct: 78 PFAHLRPGTVLGEGV--HIGNFVEI-----KKSTIGEGSKANHLSYLGDAEIGEGVNIGA 130 Query: 103 GTV--EYGGK----TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFG 156 GT+ Y G T++GDN F + SN+ ++A V + D Sbjct: 131 GTITCNYDGVNKHRTVIGDNVF-----------------IGSNSQLVAP-VTIGDGATIA 172 Query: 157 GGSAV 161 GS + Sbjct: 173 AGSTI 177 Score = 38.9 bits (92), Expect = 0.001 Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 40/162 (24%) Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93 + +VEIG V + ++ GKT IG+ + P V+ Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-------------------ST 52 Query: 94 IREGVTINRGTVEY----GGKTIVGDNNFFLANSHVAHDCKLGN-----GIVLSNNVMIA 144 I +GV I +V G VG + + +GN + Sbjct: 53 IGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKAN 112 Query: 145 -----GHVIVDDRVVFGGGS------AVHQF-TRIGKYAFIG 174 G + + V G G+ V++ T IG FIG Sbjct: 113 HLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIG 154 >gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]. Length = 190 Score = 43.3 bits (101), Expect = 6e-05 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 86 LLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA 144 L +G C I V I + G +VG N NSH ++ A Sbjct: 68 LTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-----VTANIGALVGA 122 Query: 145 GHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 G V + + V G G+ + IG+ A IG + V DV PYGI+ GNP Sbjct: 123 GPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNP 171 >gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.. Length = 119 Score = 43.3 bits (103), Expect = 7e-05 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%) Query: 22 IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD-----TQS 76 IG N +IG + ++V+IG V++ S+ + I D + P V D Sbjct: 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60 Query: 77 KYHNFVGTEL----LVGKKCVIREGVTINRGTV 105 + GT + +G I GVTI + Sbjct: 61 RKWELKGTTVKRGASIGANATILPGVTIGEYAL 93 Score = 40.9 bits (97), Expect = 4e-04 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 33/119 (27%) Query: 113 VGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV------VF----------- 155 +GDN N + +D K+G+ + + +NV I V ++D V VF Sbjct: 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60 Query: 156 ----------------GGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRG 198 G + + IG+YA +G V DV PY ++ GNP + G Sbjct: 61 RKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119 Score = 28.2 bits (64), Expect = 2.8 Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 15 LVEEGAVIGPNSLIGPFCCVGSEVEIGAG 43 V+ GA IG N+ I P +G +GAG Sbjct: 69 TVKRGASIGANATILPGVTIGEYALVGAG 97 >gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]. Length = 673 Score = 42.2 bits (99), Expect = 2e-04 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 10/115 (8%) Query: 35 GSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVI 94 +V + V + ++ V+ TKIG +K+ +V+G + + N + I Sbjct: 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISN-SVIGANCRIG-SNVRIKNSFIWNNVTI 376 Query: 95 REGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIV 149 + I I+ D+ + + LG G+V+ N ++ + V Sbjct: 377 GDNCRI--------DHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 Score = 34.1 bits (78), Expect = 0.044 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%) Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEI-----GAGVEL-----ISHCVVAGKTKIGDFTKVF 65 + G+ I NS+IG C +GS V I V + I H ++ KIG+ + Sbjct: 342 IGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK 400 Query: 66 PMAVLG 71 P +VLG Sbjct: 401 PGSVLG 406 Score = 32.2 bits (73), Expect = 0.14 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 32/176 (18%) Query: 31 FCCVGSEVEIGAGVELISHCVVAGKTKIGDFT-KVFPMAVLGGDTQSKYHNF---VGTEL 86 V S ++ A VE + + K I +T + P G+ ++ Sbjct: 263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDV 322 Query: 87 LVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146 ++ ++ V I G T +G + ++NS + +C++G+ + + N+ + Sbjct: 323 VLSHSVIVGANVVI-------GAGTKIGSGSK-ISNSVIGANCRIGSNVRIKNSFIWNN- 373 Query: 147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVV 202 V G + +A I + I PG++ G VV Sbjct: 374 ------VTIGDNCRID-------HAIICDDVKIGEGAIL------KPGSVLGFGVV 410 >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.. Length = 153 Score = 41.2 bits (98), Expect = 3e-04 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 50 CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG 109 V G +G+ + V+ AVL GD + +G++ I++G ++ V+ G Sbjct: 12 ATVIGDVTLGEGSSVWFGAVLRGDVNP---------IRIGERTNIQDGSVLH---VDPGY 59 Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGK 169 TI+GDN + + H C +G+ ++ +I ++ + GS V I Sbjct: 60 PTIIGDNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPP 118 Query: 170 YAFIGG 175 + + G Sbjct: 119 GSLVAG 124 Score = 26.6 bits (60), Expect = 7.9 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60 G+ ++H G IG N LIG + IG G + + +V I Sbjct: 70 GHGAVLH-------GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPP 118 >gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]. Length = 407 Score = 39.9 bits (93), Expect = 8e-04 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 29/143 (20%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A V A IGPN IG V +G GV L ++ +I + V Sbjct: 291 IHPSAKVHPTAKIGPNVSIGA------NVRVGPGVRLRE-SIILDDAEIEENAVVL---- 339 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129 H+ +G + +G+ + + + TI+G A+ V + Sbjct: 340 ---------HSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILG------ADVSVEDEV 384 Query: 130 KLGNGIVLSN---NVMIAGHVIV 149 + N IVL N NV + +I+ Sbjct: 385 IVLNSIVLPNKELNVSVQDEIIL 407 >gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.. Length = 109 Score = 39.4 bits (93), Expect = 0.001 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 6/107 (5%) Query: 88 VGKKCVIREGVTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146 +G I G I+ G + G ++G N ++H D + + Sbjct: 4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDD-----PERPIEQGVTSAP 58 Query: 147 VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 +++ D V G + IG A +G + V DV P I+ GNP Sbjct: 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNP 105 Score = 29.0 bits (66), Expect = 1.5 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 21 VIGPNSLIGPFCCV--GSEVEIGAGVELISHCV--VAGKTKIGDFTKVFPMAVLGGDTQS 76 IG N IGP C + G + IG V LI V I D + V Sbjct: 3 SIGDNVYIGPGCVISAGGGITIGDNV-LIGPNVTIYDHNHDIDDPERPIEQGVTSAPI-- 59 Query: 77 KYHNFVGTELLVGKKCVIREGVTINRGTV 105 +G ++ +G VI GVTI G V Sbjct: 60 ----VIGDDVWIGANVVILPGVTIGDGAV 84 >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.. Length = 78 Score = 38.0 bits (89), Expect = 0.002 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVG--------SEVEIGAGVELISHCVVA 53 +G IHP A++ VIG N IGP +G + IG VE+ ++ V+ Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 Query: 54 GKTKIGDFTKVFPMAVLG 71 G KIGD + AV+ Sbjct: 61 GGVKIGDNAVIGAGAVVT 78 Score = 36.5 bits (85), Expect = 0.008 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 38 VEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREG 97 V IG GV++ V+ G IGD + P AV+G T +I + Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA----------ATGPNEKNPTIIGDN 50 Query: 98 VTINRGTVEYGGKTIVGDNNFFLANSHVA 126 V I V G +GDN A + V Sbjct: 51 VEIGANAV-IHGGVKIGDNAVIGAGAVVT 78 Score = 34.1 bits (79), Expect = 0.045 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%) Query: 57 KIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTI-NRGTVEYGGKTIVGD 115 IG+ K+ P AV+ G +G I G I TI+GD Sbjct: 2 FIGEGVKIHPKAVIRGPVV------------IGDNVNIGPGAVIGAATGPNEKNPTIIGD 49 Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIA 144 N AN+ + K+G+ V+ ++ Sbjct: 50 NVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.. Length = 167 Score = 37.2 bits (87), Expect = 0.005 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 24/119 (20%) Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTIN--RGT-VEY 107 VV G IGD V P A + D GT +++G I++GV I+ G V Sbjct: 16 VVIGDVIIGDNVFVGPGASIRAD--------EGTPIIIGANVNIQDGVVIHALEGYSVWI 67 Query: 108 GGKT------------IVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVV 154 G +GDN F S V + K+G+ V+ +N ++ G I R V Sbjct: 68 GKNVSIAHGAIVHGPAYIGDNCFIGFRS-VVFNAKVGDNCVIGHNAVVDGVEIPPGRYV 125 >gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 161 Score = 36.0 bits (84), Expect = 0.011 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 11/135 (8%) Query: 51 VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK 110 V+ GKT I ++ GD + +G ++ + CVIR V + Sbjct: 23 VLNGKTII------QSDVIIRGDLATVS---IGRYCILSEGCVIRPPFKKFSKGVAFFPL 73 Query: 111 TIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKY 170 I GD F N V + ++G+ + + N +I I+ D V G+ V T I Y Sbjct: 74 HI-GDYVFIGENC-VVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPY 131 Query: 171 AFIGGMTGVVHDVIP 185 + + G +P Sbjct: 132 SVVSGRPARFIGELP 146 Score = 28.7 bits (65), Expect = 1.7 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62 +G+ I +V A IG IG C +G I V+++ VV T I ++ Sbjct: 74 HIGDYVFIGENCVVN-AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132 Query: 63 KV 64 V Sbjct: 133 VV 134 Score = 27.6 bits (62), Expect = 3.8 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 28 IGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKY---HNFVGT 84 IG +C + I + S V IGD+ + V + + +G Sbjct: 45 IGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCV----VNAAQIGSYVHIGK 100 Query: 85 ELLVGKKCVIREGVTINRGTV 105 ++G++C+I++ V I GTV Sbjct: 101 NCVIGRRCIIKDCVKILDGTV 121 >gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]. Length = 194 Score = 36.0 bits (83), Expect = 0.011 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Query: 92 CVIREGVTINRG-TVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG--HVI 148 I G I RG +++G ++G+ + + D + +G+ L +G H Sbjct: 68 IEIHPGAKIGRGLFIDHGTGVVIGET------AVIGDDVTIYHGVTLGGTGKESGKRHPT 121 Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPG 194 + + V G G+ + IG A IG + V+ DV P + G P Sbjct: 122 IGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPA 167 Score = 28.3 bits (63), Expect = 2.4 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 9 IIHPLALVEEGAVIGPNSLIGPF--CCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66 +I A++ + I +G IG GV + + + G +IGD K+ Sbjct: 89 VIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGA 148 Query: 67 MAV 69 +V Sbjct: 149 GSV 151 Score = 26.8 bits (59), Expect = 6.0 Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 21 VIGPNSLIGPFCCVGSEVEIGAGVELISHCVV 52 IG IG + +EIG ++ + VV Sbjct: 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 >gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.. Length = 139 Score = 35.4 bits (82), Expect = 0.018 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 33/146 (22%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 + P A++ +GA IGP +++ S V IGA + + T V A Sbjct: 3 RVPPGAIIRDGAFIGPGAVLMM----PSYVNIGA--------------YVDEGTMVDSWA 44 Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKT--IVGDNNFFLANSHVA 126 +G Q +GK + G I G +E T I+ D+ F AN V Sbjct: 45 TVGSCAQ------------IGKNVHLSAGAVIG-GVLEPLQATPVIIEDDVFIGANCEVV 91 Query: 127 HDCKLGNGIVLSNNVMIAGHVIVDDR 152 +G G VL+ V++ + DR Sbjct: 92 EGVIVGKGAVLAAGVVLTQSTPIYDR 117 Score = 33.9 bits (78), Expect = 0.054 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 88 VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG-- 145 +G V+ +N G V + + + V ++G + LS +I G Sbjct: 16 IGPGAVLMMPSYVNIGAY-------VDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL 68 Query: 146 ------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGG 175 VI++D V G V + +GK A + Sbjct: 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAA 104 Score = 33.1 bits (76), Expect = 0.089 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 16/111 (14%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 +G ++ + V GA + +++ + VGS +IG V L + V+ G Sbjct: 16 IGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGG--------- 66 Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVG 114 VL + + ++ +G C + EGV + +G V G + Sbjct: 67 -----VL--EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110 Score = 26.6 bits (59), Expect = 7.9 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 ++E+ IG N + VG + AGV V+ T I D Sbjct: 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGV------VLTQSTPIYDRET 119 >gnl|CDD|38331 KOG3121, KOG3121, KOG3121, Dynactin, subunit p25 [Cytoskeleton]. Length = 184 Score = 34.2 bits (78), Expect = 0.039 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Query: 7 NPIIHPLALVEEGAVIG---PNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 N +++ +VEEG +I N IG +C + S I +++ S IGD Sbjct: 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVF 92 Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105 + V+ Y +G ++G++CV+++ I TV Sbjct: 93 IEEECVVNAAQIGSY-VHLGKNAVIGRRCVLKDCCRILDDTV 133 >gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.. Length = 101 Score = 34.0 bits (79), Expect = 0.042 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 9/105 (8%) Query: 92 CVIREGVTINRGTV-EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA--GHVI 148 I G I G ++G ++G + + +C + G+ L H Sbjct: 3 IDIHPGAKIGPGLFIDHGTGIVIG------ETAVIGDNCTIYQGVTLGGKGKGGGKRHPT 56 Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 + D VV G G+ + IG IG V DV + G P Sbjct: 57 IGDNVVIGAGAKILGNITIGDNVKIGANAVVTKDVPANSTVVGVP 101 Score = 32.0 bits (74), Expect = 0.20 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%) Query: 88 VGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146 +G C I +GVT+ +G +GDN A + + LGN I + +NV I + Sbjct: 31 IGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKI-----LGN-ITIGDNVKIGAN 84 Query: 147 VIV-----DDRVVFG 156 +V + V G Sbjct: 85 AVVTKDVPANSTVVG 99 Score = 28.9 bits (66), Expect = 1.3 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 9 IIHPLALV-EEGAVIGPNSLIGPFCCVGSEVE--------IGAGVELISHCVVAGKTKIG 59 I H +V E AVIG N I +G + + IG V + + + G IG Sbjct: 17 IDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIG 76 Query: 60 DFTKVFPMAVL 70 D K+ AV+ Sbjct: 77 DNVKIGANAVV 87 >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 80 Score = 34.1 bits (78), Expect = 0.044 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 15 LVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60 L++ A IG + IGP +G V IG GV L CV+ + + D Sbjct: 1 LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRL-QRCVILSNSTVRD 45 >gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.. Length = 155 Score = 33.9 bits (78), Expect = 0.051 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%) Query: 8 PIIHPLALVEEGAVIGPNSLIGPFCCVG---------SEVEIGAGVELISHCVVAG---- 54 P++ P + V AV+ + +IG C +G + I G + +CV+ G Sbjct: 1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQ 60 Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVG 114 T + + + A+L G T +G LVG V+ +G I G ++IVG Sbjct: 61 DTVLEENGHIGHGAILHGCT-------IGRNALVGMNAVVMDGAVI-------GEESIVG 106 Query: 115 DNNFFLANSHV 125 F A + + Sbjct: 107 AMAFVKAGTVI 117 >gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).. Length = 169 Score = 33.2 bits (77), Expect = 0.071 Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 39/137 (28%) Query: 85 ELL--VGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKL--GNGIVLSNN 140 EL VG+ I +YG +GDN F AN +C + + + +N Sbjct: 40 ELFGSVGENVYIEPPFH-----CDYGYNIHIGDN--FYAN----FNCTILDVAPVTIGDN 88 Query: 141 VMI--------AGH----------------VIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176 V+I AGH + + D V GGG + IG + IG Sbjct: 89 VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAG 148 Query: 177 TGVVHDVIPYGILNGNP 193 + V D+ + GNP Sbjct: 149 SVVTKDIPANVVAAGNP 165 >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 163 Score = 32.6 bits (75), Expect = 0.12 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 13/68 (19%) Query: 9 IIHPLALVEEGAV------IGPNSLIGPFC------CVGSEVEIGAGVELISHCVVAGKT 56 I A+V GA IG IGP +G +G VE + + ++ T Sbjct: 19 WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVE-VKNSIIMDGT 77 Query: 57 KIGDFTKV 64 K+ V Sbjct: 78 KVPHLNYV 85 Score = 30.6 bits (70), Expect = 0.42 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFT 62 + I + EGA++ + I +G EIG + + V+ +G+ Sbjct: 7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSV 66 Query: 63 KVFPMAVLGGDTQSKYHNFVGTELLVGKKC 92 +V +++ T+ + N+VG +L G+ Sbjct: 67 EV-KNSIIMDGTKVPHLNYVGDSVL-GENV 94 >gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 101 Score = 32.6 bits (75), Expect = 0.12 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 17 EEGAV-IGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV---FPMAVLGG 72 E+G + IG +++I PF + V IG G + + G T IG K+ +++ G Sbjct: 8 EDGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEG 67 Query: 73 DTQSKYHNFVG 83 + ++ F+G Sbjct: 68 YSNKQHDGFLG 78 Score = 28.8 bits (65), Expect = 1.7 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 12/47 (25%) Query: 5 GNNPIIHPLALVEEGAVIGPNSL------------IGPFCCVGSEVE 39 G + +I P A++E IGP S IGP C +G EVE Sbjct: 15 GKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVE 61 >gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.. Length = 107 Score = 32.2 bits (74), Expect = 0.17 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 18/117 (15%) Query: 86 LLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSH----VAHDCKLGNGIVLSNN 140 L +G I EGV I N V G + + SH A IV+ + Sbjct: 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAP-IVIGDG 62 Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALR 197 +A V G G IG+ A +G + VV D+ + + GNP Sbjct: 63 AWVAAEAFV------GPG------VTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107 Score = 26.8 bits (60), Expect = 7.1 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 19/84 (22%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLI--GPFCCVGS-------------EVEIGAGVELISH 49 G I+ LA V IG ++ I G + C GS + IG G + + Sbjct: 13 GEGVWIYNLAPV----TIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAE 68 Query: 50 CVVAGKTKIGDFTKVFPMAVLGGD 73 V IG+ V +V+ D Sbjct: 69 AFVGPGVTIGEGAVVGARSVVVRD 92 >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 79 Score = 32.2 bits (74), Expect = 0.17 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSE-----------VEIGAGVELISHCVVAGKTK 57 +I ++ E A+I NS+IG +G V IGA I ++ Sbjct: 1 LIGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSV-IVDSIIGDNAV 58 Query: 58 IGDFTKVFPMAVLGGDT 74 IG+ +V + ++G D Sbjct: 59 IGENVRVVNLCIIGDDV 75 >gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]. Length = 433 Score = 31.5 bits (71), Expect = 0.30 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 24/119 (20%) Query: 40 IGAGVELISH-CVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGV 98 V L+ +V T+IG+ + + + +G+ +G++ + + Sbjct: 324 YVKKVALVGADSIVGDNTQIGENSNI-------------KRSVIGSNCDIGERVKVANSI 370 Query: 99 TINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGG 157 ++ V G + NS + ++G+G L N +I +V+ + GG Sbjct: 371 LMDNVVVGDGVN---------IENSIIGMGAQIGSGSKLK-NCIIGPGYVVEAKGKHGG 419 Score = 28.4 bits (63), Expect = 2.3 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Query: 20 AVIGPNSLIGPFCCVGSE-----VEIGAGVELISHCVVAGKTKIGDFTKV 64 +VIG N IG V + V +G GV I + ++ +IG +K+ Sbjct: 352 SVIGSNCDIGERVKVANSILMDNVVVGDGVN-IENSIIGMGAQIGSGSKL 400 >gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid transport and metabolism]. Length = 269 Score = 30.8 bits (69), Expect = 0.43 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 9/106 (8%) Query: 94 IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRV 153 I +G+ ++ T G+T V +N + H LG + H + D V Sbjct: 157 IGKGILLDHATGVVIGETAVVGDNV-----SILHPVTLGG----TGKGSGDRHPKIGDNV 207 Query: 154 VFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGV 199 + G G + IG+ A I + V+ DV P + GNP L G Sbjct: 208 LIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGK 253 >gnl|CDD|32367 COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning]. Length = 201 Score = 30.7 bits (69), Expect = 0.46 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 203 AMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVS 244 + +RA+++Q+FQ IY+ AG R +S Sbjct: 47 IESGPRKGGLDLAHLRAIHRQLFQD---IYEWAGQFRTVGIS 85 >gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.. Length = 145 Score = 29.0 bits (66), Expect = 1.4 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 20/94 (21%) Query: 21 VIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHN 80 V G IG FC + V+IG G H D+ +P + GG+ + Sbjct: 17 VGGDKLSIGKFCSIAPGVKIGLGGN---HPT--------DWVSTYPFYIFGGEWEDDAKF 65 Query: 81 F---------VGTELLVGKKCVIREGVTINRGTV 105 +G ++ +G I GVTI G V Sbjct: 66 DDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAV 99 Score = 26.7 bits (60), Expect = 6.1 Identities = 39/170 (22%), Positives = 56/170 (32%), Gaps = 47/170 (27%) Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVGTE-LLVGKKCVIREGVTINRGT-------VE 106 +GD++ S VG + L +GK C I GV I G Sbjct: 1 NISVGDYSYG-----------SGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVST 49 Query: 107 YGGKTIV--GDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQF 164 Y +++ + D +GN + + + I V + D V G AV Sbjct: 50 YPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAG-AV--- 105 Query: 165 TRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTI 214 V DV PY I+ GNP V+ R F +TI Sbjct: 106 --------------VTKDVPPYAIVGGNPA-----KVIRYR---FDEETI 133 >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.. Length = 79 Score = 28.7 bits (65), Expect = 1.9 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 12/58 (20%) Query: 25 NSLIGPFCCVGSEVE-----------IGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71 NS+IG C +G V I G I H +VA IG + P +++ Sbjct: 16 NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCT-IHHSIVADGAVIGKGCTIPPGSLIS 72 >gnl|CDD|176810 cd08976, BaFpgNei_N_4, Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8-oxo-7,8-dihydroguanine (8-oxoG) and oxidized purines and Escherichia coli Nei recognizes oxidized pyrimidines. However, neither Escherichia coli Fpg or Nei belong to this family. In addition to this BaFpgNei_N_4 domain, most enzymes belonging to this family contain a helix-two turn-helix (H2TH) domain and a zinc-finger motif. Length = 117 Score = 28.5 bits (64), Expect = 2.3 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 21/57 (36%) Query: 146 HVIVDDRVVFGGGSAV-------HQFT---RIGKYAFIG-----------GMTGVVH 181 V V D + G A FT RIGKY F+ GMTG + Sbjct: 24 EVEVGDDKILGEPKATLREVLEGRTFTETHRIGKYLFLKTKEGGWLVMHFGMTGKLD 80 >gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS. Length = 248 Score = 27.9 bits (63), Expect = 2.8 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 20/66 (30%) Query: 199 VNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVSDIINFIFAD 258 +N+ R + + LI+ Y D Q DI+N + D Sbjct: 159 INLKKWREENITEKLLELIKE-YGGRLIYPD-----------Q--------DILNAVLKD 198 Query: 259 RKRPLS 264 + L Sbjct: 199 KILYLP 204 >gnl|CDD|31975 COG1790, COG1790, Uncharacterized protein conserved in archaea [Function unknown]. Length = 209 Score = 27.7 bits (61), Expect = 3.7 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%) Query: 8 PIIHPLALVEEGAVIGPNSLIG-----PFCCVGSEVE 39 P + P+ E G + IG P CCVGS +E Sbjct: 69 PALDPMISTELGVYRLDDEEIGKLLGYPECCVGSFIE 105 >gnl|CDD|144136 pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide. Length = 131 Score = 27.4 bits (62), Expect = 4.1 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Query: 206 RAGFSRDTIH-LIRAVYKQIF 225 R S + + +IRA Y+Q+F Sbjct: 2 RPNSSEEELEEVIRAAYRQVF 22 >gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.. Length = 164 Score = 27.3 bits (61), Expect = 4.1 Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 113 VGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGS 159 +G+NN F + S V + + +G ++ + I+ + V G Sbjct: 86 IGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 >gnl|CDD|37795 KOG2584, KOG2584, KOG2584, Dihydroorotase and related enzymes [Nucleotide transport and metabolism]. Length = 522 Score = 27.2 bits (60), Expect = 4.9 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 27/115 (23%) Query: 90 KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIV--LSNNVMIAGHV 147 + V NR ++ G +V D+ F A+ +V +GI+ + N++I G V Sbjct: 3 QNKKTSPHVASNRLLIKGG--RVVNDDQSFKADVYV------EDGIIKEVGENLIIPGGV 54 Query: 148 IVDD---RVVFGGGSAVH---QFTRIG-----------KYAFIGGMTGVVHDVIP 185 V D ++V GG H Q +G K A GG T ++ V+P Sbjct: 55 KVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLP 109 >gnl|CDD|146770 pfam04305, DUF455, Protein of unknown function (DUF455). Length = 250 Score = 26.8 bits (60), Expect = 7.3 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 192 NPGALRG-VNVVAMRRAGFSRDTI 214 GAL+ N A R+AGFS D + Sbjct: 225 FRGALKPPFNEEARRKAGFSEDEL 248 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.141 0.427 Gapped Lambda K H 0.267 0.0632 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,324,507 Number of extensions: 182108 Number of successful extensions: 788 Number of sequences better than 10.0: 1 Number of HSP's gapped: 550 Number of HSP's successfully gapped: 123 Length of query: 271 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 179 Effective length of database: 4,275,709 Effective search space: 765351911 Effective search space used: 765351911 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.9 bits)