RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 364 bits (938), Expect = e-101
Identities = 119/246 (48%), Positives = 160/246 (65%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A+VE GA IG N IGPFC +G V IG G + SH V+ G T IG ++FP A
Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFAS 64
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129
+G D Q + T L++G IRE VTINRGTV+ GG T +GDNN +A HVAHDC
Sbjct: 65 IGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDC 124
Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189
+GN ++L+NN +AGHV V D + GG +AVHQF RIG +A +GGM+GV DV PY +
Sbjct: 125 VVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA 184
Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249
GNP LRG+N+V ++R GFSR+ IH +R YK +++ G ++ + + E+ PEV
Sbjct: 185 EGNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYPDSPEVK 244
Query: 250 DIINFI 255
+I++FI
Sbjct: 245 EILDFI 250
>gnl|CDD|130911 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132).
Length = 254
Score = 318 bits (816), Expect = 1e-87
Identities = 126/255 (49%), Positives = 169/255 (66%), Gaps = 1/255 (0%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A++E GA IG N IGPFC VG V+IG GVEL SH V+ G T IG+ T++FP AV
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129
+GG Q + TEL++G IRE VTINRGT GG T +G+NN +A SH+AHDC
Sbjct: 61 IGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDC 120
Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189
+GN ++L+NN +AGHV V D + GG AVHQF RIG+YA IGG++ V DV PYG++
Sbjct: 121 VVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV 180
Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249
GN LRG+N+V +RR GFSR+ I I+ Y+ +F+ G + + A + E+ PEV
Sbjct: 181 EGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSGLPLREAAQQVAEEYEDNPEVK 240
Query: 250 DIINFIFADRKRPLS 264
+I++FI + KR +
Sbjct: 241 EILDFI-RESKRGIC 254
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 241 bits (617), Expect = 2e-64
Identities = 101/247 (40%), Positives = 149/247 (60%), Gaps = 1/247 (0%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
+IHP A+++ A +G IGPF +G+ VEIG G + H V+ G T+IG K+ A
Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGA 60
Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD 128
V+G + Q + + L +G + VIREGVTI+RGT GG T +G++N +A SHVAHD
Sbjct: 61 VVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKG-GGVTRIGNDNLLMAYSHVAHD 119
Query: 129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGI 188
C++GN ++L N ++AGHV V DR + G VHQF RIG A + G + + DV PY +
Sbjct: 120 CQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179
Query: 189 LNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEV 248
+ G+P + G+N V +RR GFS I ++ YK I++ G S+ + + Q PEV
Sbjct: 180 MAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQFESPEV 239
Query: 249 SDIINFI 255
++I+FI
Sbjct: 240 EELIDFI 246
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate).
Length = 324
Score = 94.3 bits (235), Expect = 3e-20
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 11/197 (5%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64
G+ I P ++ G IG N +IGP +G +V IG G + + V+ + ++G +
Sbjct: 107 GDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVII 166
Query: 65 FPMAVLGGDTQSKYHNFVGTEL--------LVGKKCVIREGVTINRGTVEYGGKTIVGDN 116
AV+G D H G + ++ I TI+RG TI+G+
Sbjct: 167 HSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAF---DDTIIGEG 223
Query: 117 NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176
+AH+C++G ++ V IAG + V+ GG V IG IG
Sbjct: 224 TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK 283
Query: 177 TGVVHDVIPYGILNGNP 193
+GV + P G+ G P
Sbjct: 284 SGVTKSIPPPGVYGGIP 300
>gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 91.7 bits (229), Expect = 2e-19
Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 60/220 (27%)
Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69
IHP A+++ A IG IGP +G+ V IG GV + + V+ KIG ++
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVT 162
Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGV------------------------------- 98
+ YH +G + +I G
Sbjct: 163 I-------YHAVR-----IGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV 210
Query: 99 ------TINRGTVEYGGKTIVGDN----NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVI 148
TI+RG + T++G+ N +AH+ +G ++ V IAG
Sbjct: 211 EIGANTTIDRGAL---DDTVIGEGVKIDNLV----QIAHNVVIGRHTAIAAQVGIAGSTK 263
Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGI 188
+ + GG + IG I M+GV + G
Sbjct: 264 IGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGE 303
>gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. These proteins contain
repeats of the bacterial transferase hexapeptide
(pfam00132), although often these do not register above
the trusted cutoff.
Length = 201
Score = 66.0 bits (162), Expect = 9e-12
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 81 FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNN 140
V +G+ VI G IN +GDN + V HDC +G+ + ++
Sbjct: 95 IVSPSASIGEGTVIMAGAVINPDVR-------IGDNVIINTGAIVEHDCVIGDYVHIAPG 147
Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
V ++G V++ + V G G+ + Q IG A +G V D+ G++ G P
Sbjct: 148 VTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVP 200
Score = 61.3 bits (150), Expect = 2e-10
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
+IHP A+V A IG ++I + +V IG V + + +V IGD+ + P
Sbjct: 89 LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGV 148
Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105
L G +G + +G I +GVTI G +
Sbjct: 149 TLSGGV------VIGEGVFIGAGATIIQGVTIGAGAI 179
Score = 37.8 bits (89), Expect = 0.003
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
R+G+N II+ A+VE VIG I P + V IG GV + + + IG
Sbjct: 118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177
Query: 62 TKV 64
V
Sbjct: 178 AIV 180
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 50.0 bits (120), Expect = 6e-07
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 26/172 (15%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKT-----KIG 59
G + I P ++E IG + +IGP CV IG+ V + ++ V+ G +G
Sbjct: 265 GRDVEIDPNVILEGKVKIGDDVVIGPG-CVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVG 323
Query: 60 DFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----GTVEYGGKTIVGD 115
F ++ P +VLG NFV T K I +G G E G +G
Sbjct: 324 PFARLRPGSVLGAGV--HIGNFVET-----KNARIGKGSKAGHLSYLGDAEIGSNVNIGA 376
Query: 116 N----NFFLANSHVAHDCKLGNGI-VLSNNVMIAGHVIVDDRVVFGGGSAVH 162
N+ AN H +G+G+ + SN ++A V V D GS V
Sbjct: 377 GTITCNYDGANKHKT---IIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTVT 424
Score = 34.6 bits (80), Expect = 0.028
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 95 REGVTIN-------RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHV 147
GVT+ RGTVE G + N + D +G G V+ N+V+ + V
Sbjct: 245 LAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVV 304
Query: 148 IVDDRVVF----GGGSAVHQFTRI 167
I V+ G G V F R+
Sbjct: 305 IKAYSVLEGSEIGEGCDVGPFARL 328
Score = 32.6 bits (75), Expect = 0.097
Identities = 42/160 (26%), Positives = 56/160 (35%), Gaps = 42/160 (26%)
Query: 37 EVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE 96
VEIG VE+ + ++ GK KIGD + P V+ K VI
Sbjct: 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVI-------------------KNSVIGS 301
Query: 97 GVTINRGTV----EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMI-----AGH- 146
V I +V E G VG S + +GN V + N I AGH
Sbjct: 302 NVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGN-FVETKNARIGKGSKAGHL 360
Query: 147 -----VIVDDRVVFGGGS------AVHQF-TRIGKYAFIG 174
+ V G G+ ++ T IG FIG
Sbjct: 361 SYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIG 400
>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 49.4 bits (118), Expect = 1e-06
Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 48/195 (24%)
Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL-----ISHCVVAGK-----------TKIG 59
++ G VIG ++ I P C+ + IG G + I C + + +G
Sbjct: 265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVG 324
Query: 60 DFTKVFPMAVLGGDTQSKYH----NFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD 115
D + PMA L T+ H NFV T KK V+ EG + T
Sbjct: 325 DDVAIGPMAHLRPGTELSAHVKIGNFVET-----KKIVMGEGSKASHLT----------- 368
Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIAGH--VIVDDRVVFGGGSAVHQF---TRIGKY 170
+L ++ + + +G G + N + H VI DD V GS V QF +G+
Sbjct: 369 ---YLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFV---GSDV-QFVAPVTVGRN 421
Query: 171 AFIGGMTGVVHDVIP 185
+ I T V DV P
Sbjct: 422 SLIAAGTTVTKDVPP 436
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 45.2 bits (108), Expect = 2e-05
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 44/163 (26%)
Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISH---CVVAGKTKIGDFTKVFPMAVLGG 72
+ VI PN + GP G V GA + SH V ++G + ++ P A LG
Sbjct: 271 IGRDVVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGE 326
Query: 73 DTQSKYHNFVGTELLVGKKCVIREGVTINR-----------------GTV--EYGG---- 109
+K NFV K + EG +N GT+ Y G
Sbjct: 327 G--AKVGNFVEV-----KNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKH 379
Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA-GHVIVDD 151
+T +G F +NS + +G+G IA G VI +D
Sbjct: 380 RTEIGAGAFIGSNSALVAPVTIGDG------AYIASGSVITED 416
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 44.8 bits (107), Expect = 2e-05
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 46/179 (25%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVE---IGAGVEL----ISHCVVAGK 55
+G++ +I P +++ VIG + +IGP GS + IG GV + I V
Sbjct: 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGP----GSRIVDSTIGDGVTITNSVIEESKVGDN 322
Query: 56 TKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE---------------GVTI 100
+G F + P +V+G + K NFV E+ KK I E G +
Sbjct: 323 VTVGPFAHLRPGSVIGEEV--KIGNFV--EI---KKSTIGEGTKVSHLTYIGDAEVGENV 375
Query: 101 NRG----TVEYGG----KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151
N G TV Y G KTI+GDN F NS++ +G+ ++ AG I D
Sbjct: 376 NIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIA-----AGSTITKD 429
Score = 33.7 bits (78), Expect = 0.060
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 45/164 (27%)
Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93
+ ++VEIG+ + V+ G T IG+ + P G+ +
Sbjct: 262 IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGP----------------GSRI---VDST 302
Query: 94 IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVI----- 148
I +GVTI +E ++ VGDN +H+ +G + + N V I I
Sbjct: 303 IGDGVTITNSVIE---ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTK 359
Query: 149 -----------VDDRVVFGGGS------AVHQF-TRIGKYAFIG 174
V + V G G+ ++F T IG AFIG
Sbjct: 360 VSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIG 403
>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 42.1 bits (99), Expect = 1e-04
Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 27/191 (14%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI-SHC---VVAGKTKI 58
+G + II+P+ +E IG + IGP + + EIG V++I S C V+ +
Sbjct: 257 EIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRI-VDCEIGNNVKIIRSECEKSVIEDDVSV 315
Query: 59 GDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNF 118
G F+++ VL K NFV KK I E T Y G VG N
Sbjct: 316 GPFSRLREGTVL--KKSVKIGNFVEI-----KKSTIGENTKAQHLT--YLGDATVGKN-- 364
Query: 119 FLANSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177
+G G + N + ++D G S++ RIGK A IG +
Sbjct: 365 ----------VNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGS 414
Query: 178 GVVHDVIPYGI 188
+ DV PY +
Sbjct: 415 VITEDVPPYSL 425
Score = 30.9 bits (70), Expect = 0.37
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 45/154 (29%)
Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
S + ++ + P + + EG V+ + IG F VEI K+ IG+
Sbjct: 307 SVIEDDVSVGPFSRLREGTVLKKSVKIGNF------VEI-------------KKSTIGEN 347
Query: 62 TKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK----TIVGDNN 117
TK + LG T VGK I G TI T Y GK T + D
Sbjct: 348 TKAQHLTYLGDAT-------------VGKNVNIGAG-TI---TCNYDGKKKNPTFIEDGA 390
Query: 118 FFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151
F +NS + ++G G ++ AG VI +D
Sbjct: 391 FIGSNSSLVAPVRIGKGALIG-----AGSVITED 419
>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-acetyltransferase. Alternate name:
tetrahydrodipicolinate N-acetyltransferase. Note that
IUBMB lists this alternate name as the accepted name.
Unfortunately, the related succinyl transferase acting
on the same substrate (EC:2.3.1.117, TIGR00695) uses the
opposite standard. We have decided to give these two
enzymes names which more clearly indicated that they act
on the same substrate.
Length = 231
Score = 40.9 bits (96), Expect = 4e-04
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNV--M 142
++++G VI G IN G E G T++ N + V + +G G VL+ +
Sbjct: 98 QVIIGDNAVIMMGAVINIGA-EIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPP 156
Query: 143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193
A V+++D V+ G + + + R+GK A + V DV P ++ G P
Sbjct: 157 SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVP 207
Score = 37.4 bits (87), Expect = 0.004
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66
N I P A++ + +IG N++I + EIG G + + V+ G+ +G +
Sbjct: 86 NARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGA 145
Query: 67 MAVLGG--DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD 115
AVL G + S + +L+G VI EGV + +G V G + D
Sbjct: 146 GAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED 196
>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 40.3 bits (94), Expect = 6e-04
Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGK-----TKI 58
+G + I P L+ + IG + V V + G + H V+ G + +
Sbjct: 273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSV-LHEGAVIKPHSVLEGAEVGAGSDV 331
Query: 59 GDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----GTVEYGGKTIVG 114
G F ++ P VLG NFV T K + GV G V G +T VG
Sbjct: 332 GPFARLRPGTVLGEGVH--IGNFVET-----KNARLDAGVKAGHLAYLGDVTIGAETNVG 384
Query: 115 DN----NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH 162
NF N H + K+G G+ + +N + +V D GSAVH
Sbjct: 385 AGTIVANFDGVNKHQS---KVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVH 433
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 36.9 bits (86), Expect = 0.006
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
+G++ I P ++VE A +G IGPF + G EL A +G+F +
Sbjct: 303 IGDDCEISPYSVVE-DANLGAACTIGPF------ARLRPGAEL------AEGAHVGNFVE 349
Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG----KTIVGDNNFF 119
+ A LG +++ + ++G + +G I G T Y G KTI+GD+ F
Sbjct: 350 M-KKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI----TCNYDGANKFKTIIGDDVFV 403
Query: 120 LANSHVAHDCKLGNG 134
+++ + +G G
Sbjct: 404 GSDTQLVAPVTVGKG 418
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 132 GNGIVLSNNVMIAGHVIVDDRVVFGGG 158
G + + NV+I G+V + +RV G G
Sbjct: 269 GRDVEIDTNVIIEGNVTLGNRVKIGAG 295
>gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase.
Length = 360
Score = 36.0 bits (83), Expect = 0.010
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 131 LGNGIVLSNNVMIAG--------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD 182
+GN + + +NV + G H + D V+ G G+ + IG+ A IG + V+ D
Sbjct: 255 VGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD 314
Query: 183 VIPYGILNGNPGALRG 198
V P GNP L G
Sbjct: 315 VPPRTTAVGNPARLIG 330
>gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 35.9 bits (83), Expect = 0.012
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 52/185 (28%)
Query: 10 IHPLALVEEGAVI-GPNSLIGPFCCVGSEVEIGAGVELISHC------------------ 50
I P A +E GA I GP + G I G + SHC
Sbjct: 266 IGPRATIEPGAEIYGPCEIYGA-------SRIARGAVIHSHCWLRDAVVSSGATIHSFSH 318
Query: 51 ----VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE 106
V +G + ++ P AVL + ++ NFV KK V+ +G N T
Sbjct: 319 LEGAEVGDGCSVGPYARLRPGAVL--EEGARVGNFVEM-----KKAVLGKGAKANHLT-- 369
Query: 107 YGGKTIVGDN----------NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFG 156
Y G +G N+ N H +G G + +N + V + D + G
Sbjct: 370 YLGDAEIGAGANIGAGTITCNYDGVNKHRT---VIGEGAFIGSNTALVAPVTIGDGALVG 426
Query: 157 GGSAV 161
GS +
Sbjct: 427 AGSVI 431
Score = 30.8 bits (70), Expect = 0.40
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 2 SRMGNNPIIHPL-----ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL---------- 46
+ + + IH A V +G +GP + + P + +G VE+
Sbjct: 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAK 364
Query: 47 ISHCVVAGKTKIGDFTKVFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105
+H G +IG + + D +K+ +G +G + VTI G +
Sbjct: 365 ANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGAL 424
Query: 106 EYGGKTIVGD 115
G I D
Sbjct: 425 VGAGSVITKD 434
Score = 27.4 bits (61), Expect = 3.8
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM-----AVLGGDTQSKYHNFVGTE-LL 87
+G I G E+ C + G ++I + AV+ + H+F E
Sbjct: 266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSG--ATIHSFSHLEGAE 323
Query: 88 VGKKCVIREGVTINRGTV-EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146
VG C + + G V E G + VG NF V LG G +N++ G
Sbjct: 324 VGDGCSVGPYARLRPGAVLEEGAR--VG--NFVEMKKAV-----LGKG-AKANHLTYLGD 373
Query: 147 VIVDDRVVFGGGS------AVHQF-TRIGKYAFIGGMTGVVHDV 183
+ G G+ V++ T IG+ AFIG T +V V
Sbjct: 374 AEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPV 417
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 34.9 bits (81), Expect = 0.021
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 46/171 (26%)
Query: 2 SRMGNNPIIHPLALVEE---------------GAVIGPNSLIGPFCCVGSEVEIGAGVEL 46
+ +G+ I P +L+E + IG IGP+ + E +IG+
Sbjct: 281 TVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR- 339
Query: 47 ISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE 106
I + V K+++G+ +KV ++ +G T +G++ I G TI T
Sbjct: 340 IGNFVEIKKSQLGEGSKVNHLSYIGDAT-------------LGEQVNIGAG-TI---TAN 382
Query: 107 YGG----KTIVGDNNFFLANS-HVAHDCKLGNGIVLSNNVMI-AGHVIVDD 151
Y G +T++GD + ANS VA I L +V + AG I D
Sbjct: 383 YDGVKKHRTVIGDRSKTGANSVLVA-------PITLGEDVTVAAGSTITKD 426
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 34.5 bits (80), Expect = 0.032
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 18 EGAVIGPNSLIGPFC------CVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71
+ IG + +GPF +G E ++GA VE IG TKV + +G
Sbjct: 321 SESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVE-------TKNATIGRGTKVPHLTYVG 373
Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKL 131
++ N + + V +GV +R T+ G G + F+A V
Sbjct: 374 DADIGEHSNIGASSVFVN-----YDGVNKHRTTI--GSHVRTGSDTMFVAPVTVGDGAYT 426
Query: 132 GNGIVLSNNV 141
G G V+ +V
Sbjct: 427 GAGTVIREDV 436
Score = 28.4 bits (64), Expect = 2.0
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 3 RMGNNPIIHP------LALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI-SHC---VV 52
+G + +IHP + E AV+GP++ + ++V +G G ++ +H +
Sbjct: 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTL-------TDVTVGEGASVVRTHGSESEI 325
Query: 53 AGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREG 97
+G FT + P VLG + K FV T K I G
Sbjct: 326 GAGATVGPFTYLRPGTVLG--EEGKLGAFVET-----KNATIGRG 363
>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
Length = 294
Score = 33.8 bits (77), Expect = 0.048
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 131 LGNGIVLSNNVMIAGHVI--------------VDDRVVFGGGSAVHQFTRIGKYAFIGGM 176
+G V+ NNV I HV + D V+ G G+ + +IG+ A IG
Sbjct: 183 IGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAG 242
Query: 177 TGVVHDVIPYGILNGNPGALRG 198
+ V+ DV P GNP L G
Sbjct: 243 SVVLIDVPPRTTAVGNPARLVG 264
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator.
Length = 192
Score = 32.5 bits (74), Expect = 0.11
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 50/154 (32%)
Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64
G P++HP A V AV+ + ++G C VG
Sbjct: 6 GLTPVVHPEAYVHPTAVLIGDVILGKRCYVG----------------------------- 36
Query: 65 FPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYG---GKTIVGDNNFFLA 121
P+A L GD + V++EG I V +G T+V +N +
Sbjct: 37 -PLASLRGDF---------------GRIVLKEGANIQDNCVMHGFPGQDTVVEENG-HVG 79
Query: 122 NSHVAHDCKLG-NGIVLSNNVMIAGHVIVDDRVV 154
+ + H C +G N +V N V++ G VI ++ +V
Sbjct: 80 HGAILHGCIVGRNALVGMNAVVMDGAVIGENSIV 113
Score = 29.1 bits (65), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGV 44
+G N ++ A+V +GAVIG NS++ V + E+ A
Sbjct: 88 IVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQY 129
>gnl|CDD|150738 pfam10098, DUF2336, Uncharacterized protein conserved in bacteria
(DUF2336). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 263
Score = 32.6 bits (75), Expect = 0.11
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 159 SAVHQFTRIGKYAF----IGGMTGV----VHDVIPYGILNGNPGALRGVNVVAMRRAGFS 210
+ + + G+ + ++G+ V ++ +G L + AG S
Sbjct: 167 ALLLRAALSGRLEEFAAALAELSGLPVETVRRLL----HDGRGEGLA----ALCKAAGLS 218
Query: 211 RDTIHLIRA 219
T + A
Sbjct: 219 WATFAALLA 227
>gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase. Cysteine
biosynthesis.
Length = 162
Score = 31.9 bits (73), Expect = 0.18
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 94 IREGVTINRGT-VEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG--HVIVD 150
I GV I+ GT V G ++GD D + +G+ L G H V
Sbjct: 70 IGRGVFIDHGTGVVIGETAVIGD------------DVTIYHGVTLGGTGKEKGKRHPTVG 117
Query: 151 DRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPG 194
+ V+ G G+ V +G+ A IG + V+ DV P + G P
Sbjct: 118 EGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPA 161
>gnl|CDD|148192 pfam06438, HasA, Heme-binding protein A (HasA). Free iron is
limited in vertebrate hosts, thus an alternative to
siderophores has been developed by pathogenic bacteria
to access host iron bound in protein complexes. HasA is
a secreted hemophore that has the ability to obtain iron
from hemoglobin. Once bound to HasA, the heme is
shuttled to the receptor HasR, which releases the heme
into the bacterium.
Length = 190
Score = 31.7 bits (72), Expect = 0.22
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 171 AFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDT 213
A G G VH V+ YG+++GN AL GV + G S ++
Sbjct: 122 AQAAGRVGDVHKVV-YGLMSGNTSALEGVLDALLDDYGLSVNS 163
>gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase.
Length = 355
Score = 31.5 bits (71), Expect = 0.24
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 83 GTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVM 142
GT +++G+ VI + V+I G G GD + K+G+G +L V
Sbjct: 223 GTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRH-----------PKIGDGALLGACVT 271
Query: 143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGV 199
I G++ IG A + + V+ DV + ++ GNP L G
Sbjct: 272 ILGNI------------------SIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGF 310
>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
hexapeptide repeat family. This family of proteins
contains copies of the Bacterial transferase hexapeptide
repeat family (pfam00132) and is only found in operons
encoding the phosphonate C-P lyase system (GenProp0232).
Many C-P lyase operons, however, lack a homolog of this
protein.
Length = 204
Score = 30.5 bits (69), Expect = 0.45
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 144 AGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGAL 196
A V + V G G+ + IG A I V DV PY I+ G P L
Sbjct: 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKL 158
>gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional.
Length = 146
Score = 29.9 bits (67), Expect = 0.74
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 78 YHNFVGTELLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIV 136
Y + ++ G IR GVTI NRG I GNG+
Sbjct: 60 YAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHI-------------------GNGVE 100
Query: 137 LSNNVMIAGHVIVDDRVVFGGGSAV 161
L NV+I G + + + V G GS V
Sbjct: 101 LGANVIILGDITIGNNVTVGAGSVV 125
>gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
domain of unknown function. This domain is found
exclusively in non-ribosomal peptide synthetases and
always as the final domain in the polypeptide. This
domain is roughly 700 amino acids in size and is found
in polypeptides roughly twice that size.
Length = 695
Score = 29.3 bits (66), Expect = 1.1
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 113 VGDNNFFLANSHVAHD-CKLGNGIVLSNNVMIA-----------GHVIVDDRVVFGGGSA 160
+G + V D +G G ++ VM+ G V + G S
Sbjct: 115 IGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRST 174
Query: 161 VHQFTRIGKYAFIGGMTGVVHD-VIPYG 187
+ T IG A +G + + IP G
Sbjct: 175 LDIDTSIGDGAQLGHGSALQGGQSIPDG 202
Score = 28.2 bits (63), Expect = 2.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 4 MGNNPIIHPLALVEEGAVIGPNSLI 28
+G I+ ++ EG+V+GP+SL+
Sbjct: 654 LGPGAIVLYGVVMGEGSVLGPDSLV 678
Score = 27.0 bits (60), Expect = 5.1
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 29/116 (25%)
Query: 81 FVGTELLVGKKCV-IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSN 139
++ L + V I + T+N G+V +H+ D
Sbjct: 605 YIDGTDLTERDLVTIGDDSTLNEGSV---------------IQTHLFED----------- 638
Query: 140 NVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV--HDVIPYGILNGNP 193
VM + V + D G G+ V +G+ + +G + V+ +V + GNP
Sbjct: 639 RVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNP 694
>gnl|CDD|178192 PLN02580, PLN02580, trehalose-phosphatase.
Length = 384
Score = 29.0 bits (65), Expect = 1.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVG-TEL 86
++ + + K FP A++ G ++ K + VG TEL
Sbjct: 147 RSAVKNVAKYFPTAIISGRSRDKVYELVGLTEL 179
>gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase. The closely related TabB protein
of Pseudomonas syringae (pv. tabaci) appears to act in
the biosynthesis of tabtoxin rather than lysine. The
trusted cutoff is set high enough to exclude this gene.
Sequences below trusted also include a version of this
enzyme which apparently utilize acetate rather than
succinate (EC: 2.3.1.89).
Length = 269
Score = 29.1 bits (65), Expect = 1.3
Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 34/143 (23%)
Query: 12 PLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71
P A V +GA I N ++ P S V IGA V+ + T V A +G
Sbjct: 105 PGAAVRQGAFIAKNVVLMP-----SYVNIGAYVD--------------EGTMVDTWATVG 145
Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE--YGGKTIVGDNNFFLANSHVAHDC 129
Q +GK + GV I G +E TI+ DN F A S +
Sbjct: 146 SCAQ------------IGKNVHLSGGVGIG-GVLEPLQANPTIIEDNCFIGARSEIVEGV 192
Query: 130 KLGNGIVLSNNVMIAGHVIVDDR 152
+ G V+S V I + DR
Sbjct: 193 IVEEGSVISMGVFIGQSTKIYDR 215
>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals.
Length = 361
Score = 28.8 bits (65), Expect = 1.8
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD 73
+LV EG +I ++ +G V IG+G + V+ G IG +
Sbjct: 295 SLVSEGCIISGATVSHSV--LGIRVRIGSGST-VEDSVIMGDVGIGRGAVI--------- 342
Query: 74 TQSKYHNFVGTELLVGKKCVIREGVTI 100
++ K I EGV I
Sbjct: 343 ----------RNAIIDKNVRIGEGVVI 359
Score = 28.4 bits (64), Expect = 1.9
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 111 TIVGDNNFFLANSHVAHDCKLGNGI----VLSNNVMIAGHVIVDDRVVFGGGSAVHQFTR 166
D++ + +S V+ C + VL V I V+D V+ G
Sbjct: 283 AKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------VG 335
Query: 167 IGKYAFI 173
IG+ A I
Sbjct: 336 IGRGAVI 342
>gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein,
SufD, forms a cytosolic complex SufBCD. This complex
enhances the cysteine desulfurase of SufSE. The system,
together with SufA, is believed to act in iron-sulfur
cluster formation during oxidative stress. SufB and SufD
are homologous. Note that SufC belongs to the family of
ABC transporter ATP binding proteins, so this protein,
encoded by an adjacent gene, has often been annotated as
a transporter component.
Length = 366
Score = 28.4 bits (64), Expect = 2.2
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 110 KTIVGDNNF--FLANSHVAHDCKLGNGIVLSNNVMIAGHVIVD---------DRVVFGGG 158
+ I+ D F H+ K + L+ N++++ D D V G
Sbjct: 258 RGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSDDARADTKPILEIDADDVKASHG 317
Query: 159 SAVHQF 164
+ V Q
Sbjct: 318 ATVGQI 323
>gnl|CDD|180179 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 28.2 bits (63), Expect = 2.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 25 NSLIGPFCCVGSEVEIGAGVELI 47
NS I PFC G +EI +
Sbjct: 12 NSYIPPFCICGELLEIIYDYSSV 34
>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional.
Length = 272
Score = 27.8 bits (63), Expect = 2.8
Identities = 41/144 (28%), Positives = 53/144 (36%), Gaps = 34/144 (23%)
Query: 12 PLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71
P A+V GA I PN ++ P S V IGA V + T V
Sbjct: 108 PGAVVRRGAYIAPNVVLMP-----SYVNIGAYV--------------DEGTMV------- 141
Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE--YGGKTIVGDNNFFLANSHVAHDC 129
DT VG+ +GK + GV I G +E I+ DN F A S V
Sbjct: 142 -DT----WATVGSCAQIGKNVHLSGGVGIG-GVLEPLQANPVIIEDNCFIGARSEVVEGV 195
Query: 130 KLGNGIVLSNNVMIAGHVIVDDRV 153
+ G VL V + + DR
Sbjct: 196 IVEEGSVLGMGVFLGQSTKIYDRE 219
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 27.8 bits (62), Expect = 3.2
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 50/151 (33%)
Query: 8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67
P++HP A V AV LIG +V +GAGV IG P+
Sbjct: 11 PVVHPTAFVHPSAV-----LIG-------DVIVGAGV------------YIG------PL 40
Query: 68 AVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYG---GKTIVGDNNFFLANSH 124
A L GD + +++ G + G + +G TIVG+N + +
Sbjct: 41 ASLRGDY---------------GRLIVQAGANLQDGCIMHGYCDTDTIVGENG-HIGHGA 84
Query: 125 VAHDCKLG-NGIVLSNNVMIAGHVIVDDRVV 154
+ H C +G + +V N+V++ G VI ++ +V
Sbjct: 85 ILHGCVIGRDALVGMNSVIMDGAVIGEESIV 115
>gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 27.5 bits (62), Expect = 3.6
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 22/75 (29%)
Query: 136 VLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGN--- 192
VLS NV++ V+D V+ G RIG+ A VV IL+ N
Sbjct: 333 VLSPNVVVESGAEVEDSVLMDG-------VRIGRGA-------VVRRA----ILDKNVVV 374
Query: 193 -PGALRGVNVVAMRR 206
PGA GV++ RR
Sbjct: 375 PPGATIGVDLEEDRR 389
>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 27.0 bits (60), Expect = 4.9
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEI-GAGVE---LISHCVVAG-KTKIGDF 61
N +I A++ E +I NS IGP+ +G V I A VE ++ V+ G + +I D
Sbjct: 265 NSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDS 323
Query: 62 TKVFPMAVLGGDTQSKYHNFV 82
+ + G +
Sbjct: 324 VIGKKVRIKGNRRRPGDLRLT 344
>gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed.
Length = 203
Score = 26.5 bits (58), Expect = 7.4
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 104 TVEYGGKTIVGDNNFFLANSHVAHDCKLGNG------IVLSNNVMIAGHVIVD------D 151
TV G ++ N H H NG I + NNV I HV+++ D
Sbjct: 95 TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154
Query: 152 RVVFGGGSAV 161
V G GS V
Sbjct: 155 NSVIGAGSVV 164
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0844 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,526,832
Number of extensions: 298617
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 76
Length of query: 271
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,006,537
Effective search space: 717170123
Effective search space used: 717170123
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)