RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) >gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional. Length = 262 Score = 364 bits (938), Expect = e-101 Identities = 119/246 (48%), Positives = 160/246 (65%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A+VE GA IG N IGPFC +G V IG G + SH V+ G T IG ++FP A Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFAS 64 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129 +G D Q + T L++G IRE VTINRGTV+ GG T +GDNN +A HVAHDC Sbjct: 65 IGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDC 124 Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189 +GN ++L+NN +AGHV V D + GG +AVHQF RIG +A +GGM+GV DV PY + Sbjct: 125 VVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA 184 Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249 GNP LRG+N+V ++R GFSR+ IH +R YK +++ G ++ + + E+ PEV Sbjct: 185 EGNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYPDSPEVK 244 Query: 250 DIINFI 255 +I++FI Sbjct: 245 EILDFI 250 >gnl|CDD|130911 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). Length = 254 Score = 318 bits (816), Expect = 1e-87 Identities = 126/255 (49%), Positives = 169/255 (66%), Gaps = 1/255 (0%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A++E GA IG N IGPFC VG V+IG GVEL SH V+ G T IG+ T++FP AV Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDC 129 +GG Q + TEL++G IRE VTINRGT GG T +G+NN +A SH+AHDC Sbjct: 61 IGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDC 120 Query: 130 KLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGIL 189 +GN ++L+NN +AGHV V D + GG AVHQF RIG+YA IGG++ V DV PYG++ Sbjct: 121 VVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV 180 Query: 190 NGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEVS 249 GN LRG+N+V +RR GFSR+ I I+ Y+ +F+ G + + A + E+ PEV Sbjct: 181 EGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSGLPLREAAQQVAEEYEDNPEVK 240 Query: 250 DIINFIFADRKRPLS 264 +I++FI + KR + Sbjct: 241 EILDFI-RESKRGIC 254 >gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional. Length = 255 Score = 241 bits (617), Expect = 2e-64 Identities = 101/247 (40%), Positives = 149/247 (60%), Gaps = 1/247 (0%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 +IHP A+++ A +G IGPF +G+ VEIG G + H V+ G T+IG K+ A Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGA 60 Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHD 128 V+G + Q + + L +G + VIREGVTI+RGT GG T +G++N +A SHVAHD Sbjct: 61 VVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKG-GGVTRIGNDNLLMAYSHVAHD 119 Query: 129 CKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGI 188 C++GN ++L N ++AGHV V DR + G VHQF RIG A + G + + DV PY + Sbjct: 120 CQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179 Query: 189 LNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIREQNVSCPEV 248 + G+P + G+N V +RR GFS I ++ YK I++ G S+ + + Q PEV Sbjct: 180 MAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQFESPEV 239 Query: 249 SDIINFI 255 ++I+FI Sbjct: 240 EELIDFI 246 >gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). Length = 324 Score = 94.3 bits (235), Expect = 3e-20 Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 11/197 (5%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64 G+ I P ++ G IG N +IGP +G +V IG G + + V+ + ++G + Sbjct: 107 GDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVII 166 Query: 65 FPMAVLGGDTQSKYHNFVGTEL--------LVGKKCVIREGVTINRGTVEYGGKTIVGDN 116 AV+G D H G + ++ I TI+RG TI+G+ Sbjct: 167 HSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAF---DDTIIGEG 223 Query: 117 NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGM 176 +AH+C++G ++ V IAG + V+ GG V IG IG Sbjct: 224 TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK 283 Query: 177 TGVVHDVIPYGILNGNP 193 +GV + P G+ G P Sbjct: 284 SGVTKSIPPPGVYGGIP 300 >gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional. Length = 343 Score = 91.7 bits (229), Expect = 2e-19 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 60/220 (27%) Query: 10 IHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAV 69 IHP A+++ A IG IGP +G+ V IG GV + + V+ KIG ++ Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVT 162 Query: 70 LGGDTQSKYHNFVGTELLVGKKCVIREGV------------------------------- 98 + YH +G + +I G Sbjct: 163 I-------YHAVR-----IGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV 210 Query: 99 ------TINRGTVEYGGKTIVGDN----NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVI 148 TI+RG + T++G+ N +AH+ +G ++ V IAG Sbjct: 211 EIGANTTIDRGAL---DDTVIGEGVKIDNLV----QIAHNVVIGRHTAIAAQVGIAGSTK 263 Query: 149 VDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGI 188 + + GG + IG I M+GV + G Sbjct: 264 IGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGE 303 >gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 201 Score = 66.0 bits (162), Expect = 9e-12 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%) Query: 81 FVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNN 140 V +G+ VI G IN +GDN + V HDC +G+ + ++ Sbjct: 95 IVSPSASIGEGTVIMAGAVINPDVR-------IGDNVIINTGAIVEHDCVIGDYVHIAPG 147 Query: 141 VMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 V ++G V++ + V G G+ + Q IG A +G V D+ G++ G P Sbjct: 148 VTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVP 200 Score = 61.3 bits (150), Expect = 2e-10 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 +IHP A+V A IG ++I + +V IG V + + +V IGD+ + P Sbjct: 89 LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGV 148 Query: 69 VLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105 L G +G + +G I +GVTI G + Sbjct: 149 TLSGGV------VIGEGVFIGAGATIIQGVTIGAGAI 179 Score = 37.8 bits (89), Expect = 0.003 Identities = 21/63 (33%), Positives = 29/63 (46%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61 R+G+N II+ A+VE VIG I P + V IG GV + + + IG Sbjct: 118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177 Query: 62 TKV 64 V Sbjct: 178 AIV 180 >gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. Length = 451 Score = 50.0 bits (120), Expect = 6e-07 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 26/172 (15%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKT-----KIG 59 G + I P ++E IG + +IGP CV IG+ V + ++ V+ G +G Sbjct: 265 GRDVEIDPNVILEGKVKIGDDVVIGPG-CVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVG 323 Query: 60 DFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----GTVEYGGKTIVGD 115 F ++ P +VLG NFV T K I +G G E G +G Sbjct: 324 PFARLRPGSVLGAGV--HIGNFVET-----KNARIGKGSKAGHLSYLGDAEIGSNVNIGA 376 Query: 116 N----NFFLANSHVAHDCKLGNGI-VLSNNVMIAGHVIVDDRVVFGGGSAVH 162 N+ AN H +G+G+ + SN ++A V V D GS V Sbjct: 377 GTITCNYDGANKHKT---IIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTVT 424 Score = 34.6 bits (80), Expect = 0.028 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 95 REGVTIN-------RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHV 147 GVT+ RGTVE G + N + D +G G V+ N+V+ + V Sbjct: 245 LAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVV 304 Query: 148 IVDDRVVF----GGGSAVHQFTRI 167 I V+ G G V F R+ Sbjct: 305 IKAYSVLEGSEIGEGCDVGPFARL 328 Score = 32.6 bits (75), Expect = 0.097 Identities = 42/160 (26%), Positives = 56/160 (35%), Gaps = 42/160 (26%) Query: 37 EVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE 96 VEIG VE+ + ++ GK KIGD + P V+ K VI Sbjct: 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVI-------------------KNSVIGS 301 Query: 97 GVTINRGTV----EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMI-----AGH- 146 V I +V E G VG S + +GN V + N I AGH Sbjct: 302 NVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGN-FVETKNARIGKGSKAGHL 360 Query: 147 -----VIVDDRVVFGGGS------AVHQF-TRIGKYAFIG 174 + V G G+ ++ T IG FIG Sbjct: 361 SYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIG 400 >gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 459 Score = 49.4 bits (118), Expect = 1e-06 Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 48/195 (24%) Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL-----ISHCVVAGK-----------TKIG 59 ++ G VIG ++ I P C+ + IG G + I C + + +G Sbjct: 265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVG 324 Query: 60 DFTKVFPMAVLGGDTQSKYH----NFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD 115 D + PMA L T+ H NFV T KK V+ EG + T Sbjct: 325 DDVAIGPMAHLRPGTELSAHVKIGNFVET-----KKIVMGEGSKASHLT----------- 368 Query: 116 NNFFLANSHVAHDCKLGNGIVLSNNVMIAGH--VIVDDRVVFGGGSAVHQF---TRIGKY 170 +L ++ + + +G G + N + H VI DD V GS V QF +G+ Sbjct: 369 ---YLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFV---GSDV-QFVAPVTVGRN 421 Query: 171 AFIGGMTGVVHDVIP 185 + I T V DV P Sbjct: 422 SLIAAGTTVTKDVPP 436 >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 446 Score = 45.2 bits (108), Expect = 2e-05 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 16 VEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISH---CVVAGKTKIGDFTKVFPMAVLGG 72 + VI PN + GP G V GA + SH V ++G + ++ P A LG Sbjct: 271 IGRDVVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGE 326 Query: 73 DTQSKYHNFVGTELLVGKKCVIREGVTINR-----------------GTV--EYGG---- 109 +K NFV K + EG +N GT+ Y G Sbjct: 327 G--AKVGNFVEV-----KNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKH 379 Query: 110 KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIA-GHVIVDD 151 +T +G F +NS + +G+G IA G VI +D Sbjct: 380 RTEIGAGAFIGSNSALVAPVTIGDG------AYIASGSVITED 416 >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 458 Score = 44.8 bits (107), Expect = 2e-05 Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 46/179 (25%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVE---IGAGVEL----ISHCVVAGK 55 +G++ +I P +++ VIG + +IGP GS + IG GV + I V Sbjct: 267 EIGSDTVIEPGVVIKGNTVIGEDCVIGP----GSRIVDSTIGDGVTITNSVIEESKVGDN 322 Query: 56 TKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIRE---------------GVTI 100 +G F + P +V+G + K NFV E+ KK I E G + Sbjct: 323 VTVGPFAHLRPGSVIGEEV--KIGNFV--EI---KKSTIGEGTKVSHLTYIGDAEVGENV 375 Query: 101 NRG----TVEYGG----KTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151 N G TV Y G KTI+GDN F NS++ +G+ ++ AG I D Sbjct: 376 NIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIA-----AGSTITKD 429 Score = 33.7 bits (78), Expect = 0.060 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 45/164 (27%) Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCV 93 + ++VEIG+ + V+ G T IG+ + P G+ + Sbjct: 262 IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGP----------------GSRI---VDST 302 Query: 94 IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGHVI----- 148 I +GVTI +E ++ VGDN +H+ +G + + N V I I Sbjct: 303 IGDGVTITNSVIE---ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTK 359 Query: 149 -----------VDDRVVFGGGS------AVHQF-TRIGKYAFIG 174 V + V G G+ ++F T IG AFIG Sbjct: 360 VSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIG 403 >gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 448 Score = 42.1 bits (99), Expect = 1e-04 Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 27/191 (14%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI-SHC---VVAGKTKI 58 +G + II+P+ +E IG + IGP + + EIG V++I S C V+ + Sbjct: 257 EIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRI-VDCEIGNNVKIIRSECEKSVIEDDVSV 315 Query: 59 GDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNF 118 G F+++ VL K NFV KK I E T Y G VG N Sbjct: 316 GPFSRLREGTVL--KKSVKIGNFVEI-----KKSTIGENTKAQHLT--YLGDATVGKN-- 364 Query: 119 FLANSHVAHDCKLGNGIVLSNNVMIAGH-VIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177 +G G + N + ++D G S++ RIGK A IG + Sbjct: 365 ----------VNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGS 414 Query: 178 GVVHDVIPYGI 188 + DV PY + Sbjct: 415 VITEDVPPYSL 425 Score = 30.9 bits (70), Expect = 0.37 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 45/154 (29%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61 S + ++ + P + + EG V+ + IG F VEI K+ IG+ Sbjct: 307 SVIEDDVSVGPFSRLREGTVLKKSVKIGNF------VEI-------------KKSTIGEN 347 Query: 62 TKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGK----TIVGDNN 117 TK + LG T VGK I G TI T Y GK T + D Sbjct: 348 TKAQHLTYLGDAT-------------VGKNVNIGAG-TI---TCNYDGKKKNPTFIEDGA 390 Query: 118 FFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDD 151 F +NS + ++G G ++ AG VI +D Sbjct: 391 FIGSNSSLVAPVRIGKGALIG-----AGSVITED 419 >gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231 Score = 40.9 bits (96), Expect = 4e-04 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 85 ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNV--M 142 ++++G VI G IN G E G T++ N + V + +G G VL+ + Sbjct: 98 QVIIGDNAVIMMGAVINIGA-EIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPP 156 Query: 143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNP 193 A V+++D V+ G + + + R+GK A + V DV P ++ G P Sbjct: 157 SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVP 207 Score = 37.4 bits (87), Expect = 0.004 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFP 66 N I P A++ + +IG N++I + EIG G + + V+ G+ +G + Sbjct: 86 NARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGA 145 Query: 67 MAVLGG--DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD 115 AVL G + S + +L+G VI EGV + +G V G + D Sbjct: 146 GAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED 196 >gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 481 Score = 40.3 bits (94), Expect = 6e-04 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 24/172 (13%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGK-----TKI 58 +G + I P L+ + IG + V V + G + H V+ G + + Sbjct: 273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSV-LHEGAVIKPHSVLEGAEVGAGSDV 331 Query: 59 GDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINR----GTVEYGGKTIVG 114 G F ++ P VLG NFV T K + GV G V G +T VG Sbjct: 332 GPFARLRPGTVLGEGVH--IGNFVET-----KNARLDAGVKAGHLAYLGDVTIGAETNVG 384 Query: 115 DN----NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVH 162 NF N H + K+G G+ + +N + +V D GSAVH Sbjct: 385 AGTIVANFDGVNKHQS---KVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVH 433 >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 36.9 bits (86), Expect = 0.006 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 23/135 (17%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 +G++ I P ++VE A +G IGPF + G EL A +G+F + Sbjct: 303 IGDDCEISPYSVVE-DANLGAACTIGPF------ARLRPGAEL------AEGAHVGNFVE 349 Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGG----KTIVGDNNFF 119 + A LG +++ + ++G + +G I G T Y G KTI+GD+ F Sbjct: 350 M-KKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI----TCNYDGANKFKTIIGDDVFV 403 Query: 120 LANSHVAHDCKLGNG 134 +++ + +G G Sbjct: 404 GSDTQLVAPVTVGKG 418 Score = 27.7 bits (62), Expect = 3.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 132 GNGIVLSNNVMIAGHVIVDDRVVFGGG 158 G + + NV+I G+V + +RV G G Sbjct: 269 GRDVEIDTNVIIEGNVTLGNRVKIGAG 295 >gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase. Length = 360 Score = 36.0 bits (83), Expect = 0.010 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 131 LGNGIVLSNNVMIAG--------HVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHD 182 +GN + + +NV + G H + D V+ G G+ + IG+ A IG + V+ D Sbjct: 255 VGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD 314 Query: 183 VIPYGILNGNPGALRG 198 V P GNP L G Sbjct: 315 VPPRTTAVGNPARLIG 330 >gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 35.9 bits (83), Expect = 0.012 Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 52/185 (28%) Query: 10 IHPLALVEEGAVI-GPNSLIGPFCCVGSEVEIGAGVELISHC------------------ 50 I P A +E GA I GP + G I G + SHC Sbjct: 266 IGPRATIEPGAEIYGPCEIYGA-------SRIARGAVIHSHCWLRDAVVSSGATIHSFSH 318 Query: 51 ----VVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE 106 V +G + ++ P AVL + ++ NFV KK V+ +G N T Sbjct: 319 LEGAEVGDGCSVGPYARLRPGAVL--EEGARVGNFVEM-----KKAVLGKGAKANHLT-- 369 Query: 107 YGGKTIVGDN----------NFFLANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFG 156 Y G +G N+ N H +G G + +N + V + D + G Sbjct: 370 YLGDAEIGAGANIGAGTITCNYDGVNKHRT---VIGEGAFIGSNTALVAPVTIGDGALVG 426 Query: 157 GGSAV 161 GS + Sbjct: 427 AGSVI 431 Score = 30.8 bits (70), Expect = 0.40 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 16/130 (12%) Query: 2 SRMGNNPIIHPL-----ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVEL---------- 46 + + + IH A V +G +GP + + P + +G VE+ Sbjct: 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAK 364 Query: 47 ISHCVVAGKTKIGDFTKVFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTV 105 +H G +IG + + D +K+ +G +G + VTI G + Sbjct: 365 ANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGAL 424 Query: 106 EYGGKTIVGD 115 G I D Sbjct: 425 VGAGSVITKD 434 Score = 27.4 bits (61), Expect = 3.8 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%) Query: 34 VGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM-----AVLGGDTQSKYHNFVGTE-LL 87 +G I G E+ C + G ++I + AV+ + H+F E Sbjct: 266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSG--ATIHSFSHLEGAE 323 Query: 88 VGKKCVIREGVTINRGTV-EYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAGH 146 VG C + + G V E G + VG NF V LG G +N++ G Sbjct: 324 VGDGCSVGPYARLRPGAVLEEGAR--VG--NFVEMKKAV-----LGKG-AKANHLTYLGD 373 Query: 147 VIVDDRVVFGGGS------AVHQF-TRIGKYAFIGGMTGVVHDV 183 + G G+ V++ T IG+ AFIG T +V V Sbjct: 374 AEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPV 417 >gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 450 Score = 34.9 bits (81), Expect = 0.021 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 46/171 (26%) Query: 2 SRMGNNPIIHPLALVEE---------------GAVIGPNSLIGPFCCVGSEVEIGAGVEL 46 + +G+ I P +L+E + IG IGP+ + E +IG+ Sbjct: 281 TVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR- 339 Query: 47 ISHCVVAGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE 106 I + V K+++G+ +KV ++ +G T +G++ I G TI T Sbjct: 340 IGNFVEIKKSQLGEGSKVNHLSYIGDAT-------------LGEQVNIGAG-TI---TAN 382 Query: 107 YGG----KTIVGDNNFFLANS-HVAHDCKLGNGIVLSNNVMI-AGHVIVDD 151 Y G +T++GD + ANS VA I L +V + AG I D Sbjct: 383 YDGVKKHRTVIGDRSKTGANSVLVA-------PITLGEDVTVAAGSTITKD 426 >gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 482 Score = 34.5 bits (80), Expect = 0.032 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 20/130 (15%) Query: 18 EGAVIGPNSLIGPFC------CVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71 + IG + +GPF +G E ++GA VE IG TKV + +G Sbjct: 321 SESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVE-------TKNATIGRGTKVPHLTYVG 373 Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKL 131 ++ N + + V +GV +R T+ G G + F+A V Sbjct: 374 DADIGEHSNIGASSVFVN-----YDGVNKHRTTI--GSHVRTGSDTMFVAPVTVGDGAYT 426 Query: 132 GNGIVLSNNV 141 G G V+ +V Sbjct: 427 GAGTVIREDV 436 Score = 28.4 bits (64), Expect = 2.0 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 24/105 (22%) Query: 3 RMGNNPIIHP------LALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELI-SHC---VV 52 +G + +IHP + E AV+GP++ + ++V +G G ++ +H + Sbjct: 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTL-------TDVTVGEGASVVRTHGSESEI 325 Query: 53 AGKTKIGDFTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREG 97 +G FT + P VLG + K FV T K I G Sbjct: 326 GAGATVGPFTYLRPGTVLG--EEGKLGAFVET-----KNATIGRG 363 >gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase. Length = 294 Score = 33.8 bits (77), Expect = 0.048 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%) Query: 131 LGNGIVLSNNVMIAGHVI--------------VDDRVVFGGGSAVHQFTRIGKYAFIGGM 176 +G V+ NNV I HV + D V+ G G+ + +IG+ A IG Sbjct: 183 IGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAG 242 Query: 177 TGVVHDVIPYGILNGNPGALRG 198 + V+ DV P GNP L G Sbjct: 243 SVVLIDVPPRTTAVGNPARLVG 264 >gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. Length = 192 Score = 32.5 bits (74), Expect = 0.11 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 50/154 (32%) Query: 5 GNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKV 64 G P++HP A V AV+ + ++G C VG Sbjct: 6 GLTPVVHPEAYVHPTAVLIGDVILGKRCYVG----------------------------- 36 Query: 65 FPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYG---GKTIVGDNNFFLA 121 P+A L GD + V++EG I V +G T+V +N + Sbjct: 37 -PLASLRGDF---------------GRIVLKEGANIQDNCVMHGFPGQDTVVEENG-HVG 79 Query: 122 NSHVAHDCKLG-NGIVLSNNVMIAGHVIVDDRVV 154 + + H C +G N +V N V++ G VI ++ +V Sbjct: 80 HGAILHGCIVGRNALVGMNAVVMDGAVIGENSIV 113 Score = 29.1 bits (65), Expect = 1.4 Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 3 RMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGV 44 +G N ++ A+V +GAVIG NS++ V + E+ A Sbjct: 88 IVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQY 129 >gnl|CDD|150738 pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function. Length = 263 Score = 32.6 bits (75), Expect = 0.11 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 16/69 (23%) Query: 159 SAVHQFTRIGKYAF----IGGMTGV----VHDVIPYGILNGNPGALRGVNVVAMRRAGFS 210 + + + G+ + ++G+ V ++ +G L + AG S Sbjct: 167 ALLLRAALSGRLEEFAAALAELSGLPVETVRRLL----HDGRGEGLA----ALCKAAGLS 218 Query: 211 RDTIHLIRA 219 T + A Sbjct: 219 WATFAALLA 227 >gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase. Cysteine biosynthesis. Length = 162 Score = 31.9 bits (73), Expect = 0.18 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 15/104 (14%) Query: 94 IREGVTINRGT-VEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVMIAG--HVIVD 150 I GV I+ GT V G ++GD D + +G+ L G H V Sbjct: 70 IGRGVFIDHGTGVVIGETAVIGD------------DVTIYHGVTLGGTGKEKGKRHPTVG 117 Query: 151 DRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPG 194 + V+ G G+ V +G+ A IG + V+ DV P + G P Sbjct: 118 EGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPA 161 >gnl|CDD|148192 pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium. Length = 190 Score = 31.7 bits (72), Expect = 0.22 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 171 AFIGGMTGVVHDVIPYGILNGNPGALRGVNVVAMRRAGFSRDT 213 A G G VH V+ YG+++GN AL GV + G S ++ Sbjct: 122 AQAAGRVGDVHKVV-YGLMSGNTSALEGVLDALLDDYGLSVNS 163 >gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase. Length = 355 Score = 31.5 bits (71), Expect = 0.24 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 29/117 (24%) Query: 83 GTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSNNVM 142 GT +++G+ VI + V+I G G GD + K+G+G +L V Sbjct: 223 GTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRH-----------PKIGDGALLGACVT 271 Query: 143 IAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGALRGV 199 I G++ IG A + + V+ DV + ++ GNP L G Sbjct: 272 ILGNI------------------SIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGF 310 >gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204 Score = 30.5 bits (69), Expect = 0.45 Identities = 18/53 (33%), Positives = 22/53 (41%) Query: 144 AGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGNPGAL 196 A V + V G G+ + IG A I V DV PY I+ G P L Sbjct: 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKL 158 >gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional. Length = 146 Score = 29.9 bits (67), Expect = 0.74 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 20/85 (23%) Query: 78 YHNFVGTELLVGKKCVIREGVTI-NRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIV 136 Y + ++ G IR GVTI NRG I GNG+ Sbjct: 60 YAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHI-------------------GNGVE 100 Query: 137 LSNNVMIAGHVIVDDRVVFGGGSAV 161 L NV+I G + + + V G GS V Sbjct: 101 LGANVIILGDITIGNNVTVGAGSVV 125 >gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. Length = 695 Score = 29.3 bits (66), Expect = 1.1 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 13/88 (14%) Query: 113 VGDNNFFLANSHVAHD-CKLGNGIVLSNNVMIA-----------GHVIVDDRVVFGGGSA 160 +G + V D +G G ++ VM+ G V + G S Sbjct: 115 IGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRST 174 Query: 161 VHQFTRIGKYAFIGGMTGVVHD-VIPYG 187 + T IG A +G + + IP G Sbjct: 175 LDIDTSIGDGAQLGHGSALQGGQSIPDG 202 Score = 28.2 bits (63), Expect = 2.6 Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLI 28 +G I+ ++ EG+V+GP+SL+ Sbjct: 654 LGPGAIVLYGVVMGEGSVLGPDSLV 678 Score = 27.0 bits (60), Expect = 5.1 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 29/116 (25%) Query: 81 FVGTELLVGKKCV-IREGVTINRGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGIVLSN 139 ++ L + V I + T+N G+V +H+ D Sbjct: 605 YIDGTDLTERDLVTIGDDSTLNEGSV---------------IQTHLFED----------- 638 Query: 140 NVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV--HDVIPYGILNGNP 193 VM + V + D G G+ V +G+ + +G + V+ +V + GNP Sbjct: 639 RVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNP 694 >gnl|CDD|178192 PLN02580, PLN02580, trehalose-phosphatase. Length = 384 Score = 29.0 bits (65), Expect = 1.2 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 55 KTKIGDFTKVFPMAVLGGDTQSKYHNFVG-TEL 86 ++ + + K FP A++ G ++ K + VG TEL Sbjct: 147 RSAVKNVAKYFPTAIISGRSRDKVYELVGLTEL 179 >gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). Length = 269 Score = 29.1 bits (65), Expect = 1.3 Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 34/143 (23%) Query: 12 PLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71 P A V +GA I N ++ P S V IGA V+ + T V A +G Sbjct: 105 PGAAVRQGAFIAKNVVLMP-----SYVNIGAYVD--------------EGTMVDTWATVG 145 Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE--YGGKTIVGDNNFFLANSHVAHDC 129 Q +GK + GV I G +E TI+ DN F A S + Sbjct: 146 SCAQ------------IGKNVHLSGGVGIG-GVLEPLQANPTIIEDNCFIGARSEIVEGV 192 Query: 130 KLGNGIVLSNNVMIAGHVIVDDR 152 + G V+S V I + DR Sbjct: 193 IVEEGSVISMGVFIGQSTKIYDR 215 >gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. Length = 361 Score = 28.8 bits (65), Expect = 1.8 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 22/87 (25%) Query: 14 ALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGD 73 +LV EG +I ++ +G V IG+G + V+ G IG + Sbjct: 295 SLVSEGCIISGATVSHSV--LGIRVRIGSGST-VEDSVIMGDVGIGRGAVI--------- 342 Query: 74 TQSKYHNFVGTELLVGKKCVIREGVTI 100 ++ K I EGV I Sbjct: 343 ----------RNAIIDKNVRIGEGVVI 359 Score = 28.4 bits (64), Expect = 1.9 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 111 TIVGDNNFFLANSHVAHDCKLGNGI----VLSNNVMIAGHVIVDDRVVFGGGSAVHQFTR 166 D++ + +S V+ C + VL V I V+D V+ G Sbjct: 283 AKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------VG 335 Query: 167 IGKYAFI 173 IG+ A I Sbjct: 336 IGRGAVI 342 >gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. Length = 366 Score = 28.4 bits (64), Expect = 2.2 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 110 KTIVGDNNF--FLANSHVAHDCKLGNGIVLSNNVMIAGHVIVD---------DRVVFGGG 158 + I+ D F H+ K + L+ N++++ D D V G Sbjct: 258 RGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSDDARADTKPILEIDADDVKASHG 317 Query: 159 SAVHQF 164 + V Q Sbjct: 318 ATVGQI 323 >gnl|CDD|180179 PRK05638, PRK05638, threonine synthase; Validated. Length = 442 Score = 28.2 bits (63), Expect = 2.6 Identities = 9/23 (39%), Positives = 11/23 (47%) Query: 25 NSLIGPFCCVGSEVEIGAGVELI 47 NS I PFC G +EI + Sbjct: 12 NSYIPPFCICGELLEIIYDYSSV 34 >gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional. Length = 272 Score = 27.8 bits (63), Expect = 2.8 Identities = 41/144 (28%), Positives = 53/144 (36%), Gaps = 34/144 (23%) Query: 12 PLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLG 71 P A+V GA I PN ++ P S V IGA V + T V Sbjct: 108 PGAVVRRGAYIAPNVVLMP-----SYVNIGAYV--------------DEGTMV------- 141 Query: 72 GDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVE--YGGKTIVGDNNFFLANSHVAHDC 129 DT VG+ +GK + GV I G +E I+ DN F A S V Sbjct: 142 -DT----WATVGSCAQIGKNVHLSGGVGIG-GVLEPLQANPVIIEDNCFIGARSEVVEGV 195 Query: 130 KLGNGIVLSNNVMIAGHVIVDDRV 153 + G VL V + + DR Sbjct: 196 IVEEGSVLGMGVFLGQSTKIYDRE 219 >gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional. Length = 196 Score = 27.8 bits (62), Expect = 3.2 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 50/151 (33%) Query: 8 PIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67 P++HP A V AV LIG +V +GAGV IG P+ Sbjct: 11 PVVHPTAFVHPSAV-----LIG-------DVIVGAGV------------YIG------PL 40 Query: 68 AVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYG---GKTIVGDNNFFLANSH 124 A L GD + +++ G + G + +G TIVG+N + + Sbjct: 41 ASLRGDY---------------GRLIVQAGANLQDGCIMHGYCDTDTIVGENG-HIGHGA 84 Query: 125 VAHDCKLG-NGIVLSNNVMIAGHVIVDDRVV 154 + H C +G + +V N+V++ G VI ++ +V Sbjct: 85 ILHGCVIGRDALVGMNSVIMDGAVIGEESIV 115 >gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 407 Score = 27.5 bits (62), Expect = 3.6 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 22/75 (29%) Query: 136 VLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVHDVIPYGILNGN--- 192 VLS NV++ V+D V+ G RIG+ A VV IL+ N Sbjct: 333 VLSPNVVVESGAEVEDSVLMDG-------VRIGRGA-------VVRRA----ILDKNVVV 374 Query: 193 -PGALRGVNVVAMRR 206 PGA GV++ RR Sbjct: 375 PPGATIGVDLEEDRR 389 >gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase. Length = 353 Score = 27.0 bits (60), Expect = 4.9 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 7 NPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEI-GAGVE---LISHCVVAG-KTKIGDF 61 N +I A++ E +I NS IGP+ +G V I A VE ++ V+ G + +I D Sbjct: 265 NSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDS 323 Query: 62 TKVFPMAVLGGDTQSKYHNFV 82 + + G + Sbjct: 324 VIGKKVRIKGNRRRPGDLRLT 344 >gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed. Length = 203 Score = 26.5 bits (58), Expect = 7.4 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%) Query: 104 TVEYGGKTIVGDNNFFLANSHVAHDCKLGNG------IVLSNNVMIAGHVIVD------D 151 TV G ++ N H H NG I + NNV I HV+++ D Sbjct: 95 TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 Query: 152 RVVFGGGSAV 161 V G GS V Sbjct: 155 NSVIGAGSVV 164 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.141 0.427 Gapped Lambda K H 0.267 0.0844 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,526,832 Number of extensions: 298617 Number of successful extensions: 764 Number of sequences better than 10.0: 1 Number of HSP's gapped: 606 Number of HSP's successfully gapped: 76 Length of query: 271 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 179 Effective length of database: 4,006,537 Effective search space: 717170123 Effective search space used: 717170123 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.1 bits)