BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (271 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 549 bits (1414), Expect = e-158, Method: Compositional matrix adjust. Identities = 271/271 (100%), Positives = 271/271 (100%) Query: 1 MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60 MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD Sbjct: 1 MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60 Query: 61 FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120 FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL Sbjct: 61 FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120 Query: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV Sbjct: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180 Query: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE Sbjct: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240 Query: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK Sbjct: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271 >gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 55.1 bits (131), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 9 IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68 +I P+A+V G IG + +GP +G+ V IG + + + + IG+ + Sbjct: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGV 194 Query: 69 VLGGDT------QSKYHNFVGT-ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLA 121 +G D S H V +++ K I I+RGT++ TI+G+N Sbjct: 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDN 251 Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181 + H+ +G G ++ + V IAG + D V+ GG + + +IG I +GV+ Sbjct: 252 QVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311 Query: 182 DVIPYG 187 D IP G Sbjct: 312 D-IPAG 316 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181 + + D K+ +G+V++ ++ V + + G GS + RIG+ IG + + Sbjct: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181 Query: 182 DVI 184 +I Sbjct: 182 SLI 184 >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 33.1 bits (74), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%) Query: 18 EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77 EG IG ++IGPF + E I V +IG+F +V + G ++ Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347 Query: 78 YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135 + ++VG + +VGK I G +T N GT +Y KT + +N F +NS + +G G Sbjct: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404 Query: 136 VLSNNVMIAGHVIVDD 151 ++ +G +I D Sbjct: 405 YVA-----SGSIITQD 415 Score = 31.6 bits (70), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 +G II P A + + I N IG FC V + I G + I+H G + +G Sbjct: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362 Query: 64 VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119 + + D KY + +G + +TI +GT G I D N+ Sbjct: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422 Query: 120 LANS 123 A S Sbjct: 423 FARS 426 >gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter asiaticus str. psy62] Length = 110 Score = 30.8 bits (68), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 M +N ++ A V + A + N+ + F V S E+ + V K+G + K Sbjct: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS------DNTYVRDNAKVGGYAK 54 Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113 V A +GG+ + VG + V VI + RG GG T+V Sbjct: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARV-RGNAVVGGDTVV 103 Score = 27.3 bits (59), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT------RIGKYAFIGG 175 N++V + K+G +S N + G+ IV D GG + V FT R+ A +GG Sbjct: 40 NTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGG 99 Query: 176 MTGVVHDVI 184 T V D + Sbjct: 100 DTVVEGDTV 108 Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61 + + +N + A V A + N+ +G V E+G +I V++G + Sbjct: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR---- 90 Query: 62 TKVFPMAVLGGDT 74 V AV+GGDT Sbjct: 91 --VRGNAVVGGDT 101 Score = 22.7 bits (47), Expect = 7.4, Method: Compositional matrix adjust. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 123 SHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177 + V + ++ + + +N + G+ V GG + V +G AF+ G T Sbjct: 29 AQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFT 83 >gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] Length = 350 Score = 28.9 bits (63), Expect = 0.085, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 11 HPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67 P +V+EG++I P S++ P G + + AG+++ S V G + K F M Sbjct: 209 QPQTIVQEGSIIDPESVLNP--QFGKPIRVAAGMDIRS---VLGIHSVPMIEKSFSM 260 >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 28.9 bits (63), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 +G ++ P + V GA IG S+I + VGS +IG V + + G + Sbjct: 123 IGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLE------ 175 Query: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNN 117 + G T + + F+G + + C+IREG + G V G T + D N Sbjct: 176 ----PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG-VFIGKSTKIIDRN 224 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 33/187 (17%) Query: 40 IGAGVELI--SHCVVAGKTKIGDFTKV--------FPMAVLGGDTQSKYHNFVGTELLVG 89 IG + +I SH V G+ +GDF + P+ +LG + +F+ E L+ Sbjct: 274 IGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLN 333 Query: 90 ---KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSH----------VAHDCK---LGN 133 +K I+ V N ++ IV +N F N H +A K +G Sbjct: 334 ILNEKIEIQNAV--NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGE 391 Query: 134 GIVLSNNVMIAGHVIVDDR--VVFGGGSAVHQFTRIGKYAFIGGM---TGVVHDVIPYGI 188 V + V + + D + ++ G + + T+ IG + T + +D + Y I Sbjct: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451 Query: 189 LNGNPGA 195 L GNP A Sbjct: 452 LYGNPNA 458 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 23.9 bits (50), Expect = 3.4, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 239 REQNVSCPEVSDIINFIFADRKRPL 263 +EQN P + + NFI D + P+ Sbjct: 597 KEQNYCRPIIDNSTNFIVKDGRHPI 621 >gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 306 Score = 22.7 bits (47), Expect = 7.1, Method: Compositional matrix adjust. Identities = 10/14 (71%), Positives = 10/14 (71%) Query: 49 HCVVAGKTKIGDFT 62 H V AGK IGDFT Sbjct: 123 HVVNAGKVMIGDFT 136 >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 7/17 (41%), Positives = 12/17 (70%) Query: 93 VIREGVTINRGTVEYGG 109 ++++G+ I RG YGG Sbjct: 35 IVKDGIVIGRGVTAYGG 51 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.141 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 183,018 Number of Sequences: 1233 Number of extensions: 7900 Number of successful extensions: 61 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 21 length of query: 271 length of database: 328,796 effective HSP length: 73 effective length of query: 198 effective length of database: 238,787 effective search space: 47279826 effective search space used: 47279826 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)