BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine
acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score =  549 bits (1414), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60
           MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD
Sbjct: 1   MSRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGD 60

Query: 61  FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120
           FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL
Sbjct: 61  FTKVFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFL 120

Query: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180
           ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV
Sbjct: 121 ANSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVV 180

Query: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240
           HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE
Sbjct: 181 HDVIPYGILNGNPGALRGVNVVAMRRAGFSRDTIHLIRAVYKQIFQQGDSIYKNAGAIRE 240

Query: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271
           QNVSCPEVSDIINFIFADRKRPLSNWGNSKK
Sbjct: 241 QNVSCPEVSDIINFIFADRKRPLSNWGNSKK 271


>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 347

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 9   IIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMA 68
           +I P+A+V  G  IG  + +GP   +G+ V IG    + +   +   + IG+   +    
Sbjct: 136 VIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIY-SSLIGNSVILHSGV 194

Query: 69  VLGGDT------QSKYHNFVGT-ELLVGKKCVIREGVTINRGTVEYGGKTIVGDNNFFLA 121
            +G D        S  H  V    +++  K  I     I+RGT++    TI+G+N     
Sbjct: 195 RIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTID---DTIIGENTKIDN 251

Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
              + H+  +G G ++ + V IAG   + D V+ GG   +  + +IG    I   +GV+ 
Sbjct: 252 QVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK 311

Query: 182 DVIPYG 187
           D IP G
Sbjct: 312 D-IPAG 316



 Score = 23.9 bits (50), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMTGVVH 181
            + +  D K+ +G+V++   ++   V +  +   G GS +    RIG+   IG  + +  
Sbjct: 122 QAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYS 181

Query: 182 DVI 184
            +I
Sbjct: 182 SLI 184


>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 442

 Score = 33.1 bits (74), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%)

Query: 18  EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77
           EG  IG  ++IGPF  +  E  I   V            +IG+F +V    +  G ++  
Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347

Query: 78  YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135
           + ++VG + +VGK   I  G +T N  GT +Y  KT + +N F  +NS +     +G G 
Sbjct: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404

Query: 136 VLSNNVMIAGHVIVDD 151
            ++     +G +I  D
Sbjct: 405 YVA-----SGSIITQD 415



 Score = 31.6 bits (70), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 4   MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
           +G   II P A + +   I  N  IG FC V  +  I  G + I+H    G + +G    
Sbjct: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362

Query: 64  VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119
           +    +    D   KY   +     +G    +   +TI +GT    G  I  D   N+  
Sbjct: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422

Query: 120 LANS 123
            A S
Sbjct: 423 FARS 426


>gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score = 30.8 bits (68), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 4   MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
           M +N ++   A V + A +  N+ +  F  V S  E+        +  V    K+G + K
Sbjct: 1   MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS------DNTYVRDNAKVGGYAK 54

Query: 64  VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113
           V   A +GG+   +    VG +  V    VI     + RG    GG T+V
Sbjct: 55  VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARV-RGNAVVGGDTVV 103



 Score = 27.3 bits (59), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT------RIGKYAFIGG 175
           N++V  + K+G    +S N  + G+ IV D    GG + V  FT      R+   A +GG
Sbjct: 40  NTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGG 99

Query: 176 MTGVVHDVI 184
            T V  D +
Sbjct: 100 DTVVEGDTV 108



 Score = 23.1 bits (48), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 2   SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
           + + +N  +   A V   A +  N+ +G    V    E+G    +I   V++G  +    
Sbjct: 35  AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR---- 90

Query: 62  TKVFPMAVLGGDT 74
             V   AV+GGDT
Sbjct: 91  --VRGNAVVGGDT 101



 Score = 22.7 bits (47), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 123 SHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177
           + V  + ++ +   + +N  + G+  V      GG + V     +G  AF+ G T
Sbjct: 29  AQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFT 83


>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 350

 Score = 28.9 bits (63), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 11  HPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67
            P  +V+EG++I P S++ P    G  + + AG+++ S   V G   +    K F M
Sbjct: 209 QPQTIVQEGSIIDPESVLNP--QFGKPIRVAAGMDIRS---VLGIHSVPMIEKSFSM 260


>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 285

 Score = 28.9 bits (63), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 4   MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
           +G   ++ P + V  GA IG  S+I  +  VGS  +IG  V +     + G  +      
Sbjct: 123 IGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLE------ 175

Query: 64  VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGDNN 117
                +  G T  + + F+G    + + C+IREG  +  G V  G  T + D N
Sbjct: 176 ----PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG-VFIGKSTKIIDRN 224


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 25.0 bits (53), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 40  IGAGVELI--SHCVVAGKTKIGDFTKV--------FPMAVLGGDTQSKYHNFVGTELLVG 89
           IG  + +I  SH V  G+  +GDF  +         P+ +LG   +    +F+  E L+ 
Sbjct: 274 IGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLN 333

Query: 90  ---KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSH----------VAHDCK---LGN 133
              +K  I+  V  N   ++     IV +N  F  N H          +A   K   +G 
Sbjct: 334 ILNEKIEIQNAV--NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGE 391

Query: 134 GIVLSNNVMIAGHVIVDDR--VVFGGGSAVHQFTRIGKYAFIGGM---TGVVHDVIPYGI 188
             V  + V    + + D +  ++   G  + + T+      IG +   T + +D + Y I
Sbjct: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451

Query: 189 LNGNPGA 195
           L GNP A
Sbjct: 452 LYGNPNA 458


>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 23.9 bits (50), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 239 REQNVSCPEVSDIINFIFADRKRPL 263
           +EQN   P + +  NFI  D + P+
Sbjct: 597 KEQNYCRPIIDNSTNFIVKDGRHPI 621


>gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 306

 Score = 22.7 bits (47), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 49  HCVVAGKTKIGDFT 62
           H V AGK  IGDFT
Sbjct: 123 HVVNAGKVMIGDFT 136


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 22.3 bits (46), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 93  VIREGVTINRGTVEYGG 109
           ++++G+ I RG   YGG
Sbjct: 35  IVKDGIVIGRGVTAYGG 51


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.141    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,018
Number of Sequences: 1233
Number of extensions: 7900
Number of successful extensions: 61
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 21
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)