HHsearch alignment for GI: 255764482 and conserved domain: PRK00517
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed.
Probab=99.63 E-value=1.3e-14 Score=101.65 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=85.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 98557899958784389999998679988999988989999889999980664522253020044423531000012357
Q gi|255764482|r 9 ATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKN 88 (225)
Q Consensus 9 ~~~~~~VLDlGcG~G~~~l~la~r~~~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 88 (225)
T Consensus 160 ~~~~~~vLDvG~GSGILaIaA~k-lGa~~v~a~DiD~~Av~~a~eN~~lN~v~---~~~~~~~~~~~----------~~~ 225 (298)
T PRK00517 160 VLPGKTVLDVGCGSGILAIAAAK-LGAKPVLAIDIDPQAVEAARENAELNGVD---DRLELYLPEDQ----------PLE 225 (298)
T ss_pred CCCCCEEEEECCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCC---CCEEEECCCCC----------CCC
T ss_conf 54688688715770699999997-49984999989899999999999986998---42689616643----------446
Q ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE-CCHHHHHHHHHHHHC
Q ss_conf 65205772265446446547885455652056689899999999862469837870-288889999998521
Q gi|255764482|r 89 NFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSLI-ARPQSLIQIVNACAR 159 (225)
Q Consensus 89 ~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~i-~~~~~l~~~l~~~~~ 159 (225)
T Consensus 226 ~~~DlvvANIl---------------------a~vl~~l~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~ 276 (298)
T PRK00517 226 GKADVIVANIL---------------------ANPLIELAPDLAALVKPGGRLILSGILAEQADEVLEAYED 276 (298)
T ss_pred CCCCEEEEECC---------------------HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 76468997315---------------------8999999999999738997999927848899999999998