HHsearch alignment for GI: 255764482 and conserved domain: PRK11933

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=99.51  E-value=1.1e-12  Score=90.76  Aligned_cols=129  Identities=12%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             HCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             38998557899958784389999998679-98899998898999988999998066452225302004442353100001
Q gi|255764482|r    6 LVNATGSFHLADLGAGAGAAGLAVASRLH-EAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA   84 (225)
Q Consensus         6 ~~~~~~~~~VLDlGcG~G~~~l~la~r~~-~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   84 (225)
T Consensus       108 ~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n----~~vt~~d~~~~~------  177 (471)
T PRK11933        108 FADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSN----VALTHFDGRVFG------  177 (471)
T ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC----EEEEECCHHHHH------
T ss_conf             2488999989995778548999999975899669998388999999999999719984----799935866740------


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH----CCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             235765205772265446446547885455652----056689899999999862469837870
Q gi|255764482|r   85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAH----VMLEDSFEKWIRTACAIMRSSGQLSLI  144 (225)
Q Consensus        85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~a~~lLkpgG~~~~i  144 (225)
T Consensus       178 ~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYS  241 (471)
T PRK11933        178 AALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS  241 (471)
T ss_pred             HHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             3230106679987888887335559757641898799999999999999999873889689998