HHsearch alignment for GI: 255764482 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=99.51 E-value=1.1e-12 Score=90.76 Aligned_cols=129 Identities=12% Similarity=0.222 Sum_probs=94.4
Q ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 38998557899958784389999998679-98899998898999988999998066452225302004442353100001
Q gi|255764482|r 6 LVNATGSFHLADLGAGAGAAGLAVASRLH-EAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLA 84 (225)
Q Consensus 6 ~~~~~~~~~VLDlGcG~G~~~l~la~r~~-~~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 84 (225)
T Consensus 108 ~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n----~~vt~~d~~~~~------ 177 (471)
T PRK11933 108 FADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSN----VALTHFDGRVFG------ 177 (471)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC----EEEEECCHHHHH------
T ss_conf 2488999989995778548999999975899669998388999999999999719984----799935866740------
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH----CCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 235765205772265446446547885455652----056689899999999862469837870
Q gi|255764482|r 85 GLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAH----VMLEDSFEKWIRTACAIMRSSGQLSLI 144 (225)
Q Consensus 85 ~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~a~~lLkpgG~~~~i 144 (225)
T Consensus 178 ~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYS 241 (471)
T PRK11933 178 AALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (471)
T ss_pred HHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 3230106679987888887335559757641898799999999999999999873889689998