HHsearch alignment for GI: 255764482 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=99.17 E-value=1.3e-10 Score=79.15 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=101.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 985578999587843899999986799-8899998898999988999998066452225302004442353100001235
Q gi|255764482|r 9 ATGSFHLADLGAGAGAAGLAVASRLHE-AQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK 87 (225)
Q Consensus 9 ~~~~~~VLDlGcG~G~~~l~la~r~~~-~~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 87 (225)
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k-----------~F--P~~nv~fi~GDftdee~l~ki~~~~ 96 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------GF--PIENVDFIRGDFTDEEVLNKILERV 96 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCC-----------CC--CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 1078867865789873877887760685338998545578-----------85--6466147544767878999999857
Q ss_pred CC---CCCEEEECC-CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHCCCC
Q ss_conf 76---520577226-544644654788545565205668989999999986246983787-0288889999998521788
Q gi|255764482|r 88 NN---FYDHVIMNP-PFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIMRSSGQLSL-IARPQSLIQIVNACARRIG 162 (225)
Q Consensus 88 ~~---~fDlii~nP-Py~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lLkpgG~~~~-i~~~~~l~~~l~~~~~~~~ 162 (225)
T Consensus 97 g~dekk~DVV~SDaaP~~--SG~~~iD------h~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqGe~~d~y~~e~r~~F~ 168 (192)
T TIGR00438 97 GDDEKKVDVVMSDAAPNI--SGIWDID------HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFE 168 (192)
T ss_pred CCCCCEEEEEEECCCCCC--CCCCCCC------HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCC
T ss_conf 898743778985268887--8987543------44379999999999999861589899998537428899997652054
Q ss_pred CEEEE
Q ss_conf 46999
Q gi|255764482|r 163 SLEIT 167 (225)
Q Consensus 163 ~~~i~ 167 (225)
T Consensus 169 ~~k~~ 173 (192)
T TIGR00438 169 KVKVT 173 (192)
T ss_pred EEEEE
T ss_conf 76744