HHsearch alignment for GI: 255764482 and conserved domain: TIGR00675
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=95.76 E-value=0.038 Score=31.32 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=57.9
Q ss_pred EEEECCCHHHHHHHHHHHC-----CCCEEEEEEC--CHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 9995878438999999867-----9988999988--98999988999998066452225302004442353100001235
Q gi|255764482|r 15 LADLGAGAGAAGLAVASRL-----HEAQILLAER--SPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLK 87 (225)
Q Consensus 15 VLDlGcG~G~~~l~la~r~-----~~~~v~gvD~--~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 87 (225)
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~--------~~~~~~~DI~~i~~~~~~~~~~ 72 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGN--------DEKVPFGDITKISPSDLLRHIA 72 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC--------CCEECCCCCCCCCCCCCCCCCC
T ss_conf 94542551357899997410141113788720166877899999976478--------8420677633366011500124
Q ss_pred CCCCCEEEECCCCC
Q ss_conf 76520577226544
Q gi|255764482|r 88 NNFYDHVIMNPPFN 101 (225)
Q Consensus 88 ~~~fDlii~nPPy~ 101 (225)
T Consensus 73 ~Pd~D~L~gGFPCQ 86 (425)
T TIGR00675 73 IPDFDILLGGFPCQ 86 (425)
T ss_pred CCCEEEEECCCCCC
T ss_conf 88678996389971