HHsearch alignment for GI: 255764482 and conserved domain: pfam01739

>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=97.81  E-value=0.00015  Score=44.85  Aligned_cols=116  Identities=15%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             CCCCCEEEEECCCHHH----HHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHH----HHHCCCC-------------
Q ss_conf             9855789995878438----9999998679-----988999988989999889999----9806645-------------
Q gi|255764482|r    9 ATGSFHLADLGAGAGA----AGLAVASRLH-----EAQILLAERSPLMAHYARKTL----ALPANAQ-------------   62 (225)
Q Consensus         9 ~~~~~~VLDlGcG~G~----~~l~la~r~~-----~~~v~gvD~~~~~~~~A~~n~----~~~~~~~-------------   62 (225)
T Consensus        28 ~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~  107 (194)
T pfam01739        28 NSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGG  107 (194)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCC
T ss_conf             89955999736889951899999999974325787449999739889999998789889998459999999628607899


Q ss_pred             -------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf             -------2225302004442353100001235765205772265446446547885455652056689899999999862
Q gi|255764482|r   63 -------ISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACAIM  135 (225)
Q Consensus        63 -------~~~~~~~~~~D~~~~~~~~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~lL  135 (225)
T Consensus       108 ~~~i~~~lr~~V~F~~~NL~--------~~~~~~~~DlIfCRNVl----------------IYF~~~~~~~vl~~l~~~L  163 (194)
T pfam01739       108 GYRVKPEIKEMVLFEYHNLL--------DYPPLGDFDVIFCRNVL----------------IYFDEETQRKILNRFASAL  163 (194)
T ss_pred             CEEECHHHHCCCEEEECCCC--------CCCCCCCEEEEEECCEE----------------EECCHHHHHHHHHHHHHHH
T ss_conf             48768899711668546655--------68876750399980210----------------1379999999999999984


Q ss_pred             CCCCEEEEECCHHH
Q ss_conf             46983787028888
Q gi|255764482|r  136 RSSGQLSLIARPQS  149 (225)
Q Consensus       136 kpgG~~~~i~~~~~  149 (225)
T Consensus       164 ~~gG~L~lG~-~Es  176 (194)
T pfam01739       164 KPGGYLFLGH-SES  176 (194)
T ss_pred             CCCCEEEEEC-CCC
T ss_conf             8994999807-566