HHsearch alignment for GI: 255764482 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=98.45 E-value=5.9e-06 Score=52.81 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=80.6
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 89999889899998899999806645222530200444235310000123576520577226544644654788545565
Q gi|255764482|r 37 QILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEA 116 (225)
Q Consensus 37 ~v~gvD~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~fDlii~nPPy~~~~~~~~~~~~~~~a 116 (225)
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~~He~l~~~-----v~~~~i~~~~FNLGYLPggDk~i~T------ 66 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAG---LSEIVELILDSHENIDEY-----IPEGPVKAAIFNLGYLPGGDKSITT------ 66 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCC---CCCCEEEEECCHHHHHHH-----CCCCCCCEEEEECCCCCCCCCCCEE------
T ss_conf 95799609999999999999659---875689997798889863-----7646766899966768899987587------
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCCEEEEEC-C--H------HHHHHHHHHHHCCC-CCEEEEEECCCCCCCCEEEEEE
Q ss_conf 20566898999999998624698378702-8--8------88999999852178-8469998145896983099999
Q gi|255764482|r 117 HVMLEDSFEKWIRTACAIMRSSGQLSLIA-R--P------QSLIQIVNACARRI-GSLEITPLHPREGECASRILVT 183 (225)
Q Consensus 117 ~~~~~~~~~~~~~~a~~lLkpgG~~~~i~-~--~------~~l~~~l~~~~~~~-~~~~i~~v~~~~~~~~~~vlv~ 183 (225)
T Consensus 67 ---~~~tTi~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~~~~~~V~~~~-~~N~~~~pP~l~~Ie 139 (140)
T pfam06962 67 ---KPDTTLEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLDQKKWNVLQYQ-FINQVNAPPFLIAIE 139 (140)
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEEEEE-CCCCCCCCCEEEEEE
T ss_conf ---7720999999999963669899999979999879999999999984896057999997-156899998899996