RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764482|ref|YP_003065169.2| methyltransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
(225 letters)
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 168 bits (427), Expect = 1e-42
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 10/223 (4%)
Query: 1 MILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPAN 60
++LA+ + DLGAG GA GL +A R +A+I+ E A A++ +AL
Sbjct: 34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--- 90
Query: 61 AQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVML 120
+ +RI +IE D+ + +D +I NPP+ ++ + + ++ A +
Sbjct: 91 NPLEERIQVIEADIKEFLKAL-----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEI 145
Query: 121 EDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACAR-RIGSLEITPLHPREGECASR 179
E IR A +++ G+L+ + RP+ L +I+ + I ++P+ G+ A+R
Sbjct: 146 TLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAANR 205
Query: 180 ILVTGRKGMRGQLRFRYPIVLHKPNGQPYSRFVTDLINGKRSL 222
+LV KG + L+ P+++H +G+ Y+ V ++ G
Sbjct: 206 VLVEAIKGGKSGLKVLPPLIIHDEDGE-YTEEVKEIYQGFYLK 247
>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 49.5 bits (119), Expect = 7e-07
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 25/144 (17%)
Query: 2 ILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANA 61
+L S + + DLG G G G A+A R + ++ + + + AR LA AN
Sbjct: 22 LLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLA--ANG 79
Query: 62 QISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLE 121
+ + D+ + ++ +D +I NPPF G T + A
Sbjct: 80 --LENGEVFWSDL--------YSAVEPGKFDLIISNPPF--HAGKATDYDV---AQRF-- 122
Query: 122 DSFEKWIRTACAIMRSSGQLSLIA 145
I A ++ G+L ++A
Sbjct: 123 ------IAGAARHLKPGGELWIVA 140
>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 42.6 bits (100), Expect = 9e-05
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 26/132 (19%)
Query: 14 HLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVD 73
+ DLG G G GL +A + +A++ L + + ARK LA + + +
Sbjct: 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASN 216
Query: 74 VTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTACA 133
+ E + +D +I NPPF+ + ++ I A
Sbjct: 217 LYEPVEGK---------FDLIISNPPFHAGKAV-------------VHSLAQEIIAAAAR 254
Query: 134 IMRSSGQLSLIA 145
++ G+L ++A
Sbjct: 255 HLKPGGELWIVA 266
>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 41.1 bits (96), Expect = 2e-04
Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 12 SFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIE 71
+ DLG G+GA +A+A +A+++ + SP AR+ NA+ + + ++
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE------NAERNGLVRVLV 164
Query: 72 VDVTLVGENRNLAGLKNNFYDHVIMNPPF-NERIGTMTPDKIKEEAHVML------EDSF 124
V L L+ F D ++ NPP+ + P+ ++ E + L + +
Sbjct: 165 VQSDL------FEPLRGKF-DLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY 217
Query: 125 EKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSLEITPLHPREGECASRILVTG 184
+ + A I++ G L L + V A G EI R+++
Sbjct: 218 RRILGEAPDILKPGGVLILEIGLTQG-EAVKALFEDTGFFEIVETLKDLFG-RDRVVLAK 275
Query: 185 RKGMR 189
+ R
Sbjct: 276 LRSER 280
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 39.0 bits (91), Expect = 0.001
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 17 DLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTL 76
DLG G GA LA+AS A++ + SP+ ARK A A ++ + +++ D
Sbjct: 4 DLGCGTGALALALASG-PGARVTGVDISPVALELARKAAA----ALLADNVEVLKGDA-- 56
Query: 77 VGENRNLAGLKNNFYDHVIMNPPF 100
L + +D +I +PP
Sbjct: 57 ----EELPPEADESFDVIISDPPL 76
>gnl|CDD|30770 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 32.2 bits (73), Expect = 0.11
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 18 LGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTLV 77
+G G G V L +I + E P + ARK L P+ R+ +I D
Sbjct: 83 IGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG--- 139
Query: 78 GENRNLAGLKNNFYDHVIMN 97
+D +I++
Sbjct: 140 ---VEFLRDCEEKFDVIIVD 156
>gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General
function prediction only].
Length = 328
Score = 32.3 bits (73), Expect = 0.11
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 14 HLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPA-NAQISKRISLIEV 72
H+ DLG G+GA L++ L + + + S + L NAQ K IEV
Sbjct: 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSK-------AAIKLAKENAQRLKLSGRIEV 203
Query: 73 -DVTLVGENRNLAGLKNNFYDHVIMNPP--FNERIGTMTPDKIKEEAHVMLE------DS 123
+ + + L D ++ NPP + + P+ E + L+ D+
Sbjct: 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263
Query: 124 FEKWIRTACAIMRSSG--QLSLIARPQS 149
+ A +++ G QL L+ R +
Sbjct: 264 LVHYWLLATRMLQPGGFEQLELVERKEH 291
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 31.4 bits (71), Expect = 0.19
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 14 HLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVD 73
+ DL AG+GA GL SR A+++ E+ ++ L + ++ D
Sbjct: 46 RVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENL---KALGLEGEARVLRND 101
Query: 74 VTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLED 122
+ G + F D V ++PP+ + + + E + L+
Sbjct: 102 ALRALKQ---LGTREPF-DLVFLDPPYAKGLLDKELALLLLEENGWLKP 146
>gnl|CDD|30465 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair].
Length = 381
Score = 31.4 bits (71), Expect = 0.20
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 60 NAQISKRISLIEVDVTLVGENRNLAGLKNNF--YDHVIMNPPFNERIGT 106
A + I + D T LK Y VI NPP+ ER+G+
Sbjct: 276 AAGVGDLIEFKQADAT---------DLKEPLEEYGVVISNPPYGERLGS 315
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 29.8 bits (67), Expect = 0.56
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 16 ADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVT 75
DLGAG G + A L +++L + P AR ++ + + DV+
Sbjct: 50 LDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARA-----NAEELLGDVEFVVADVS 103
Query: 76 LVGENRNLAGLKNNFYDHVIMNPPFNERI 104
+D VIMNPPF +
Sbjct: 104 DF----------RGKFDTVIMNPPFGSQR 122
>gnl|CDD|33834 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 29.2 bits (65), Expect = 0.97
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 16 ADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQIS 64
ADLGAG+G L+V + +++ E+ P A A + L +P +
Sbjct: 37 ADLGAGSGI--LSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWE 83
>gnl|CDD|145672 pfam02636, DUF185, Uncharacterized ACR, COG1565. This family
contains several uncharacterized proteins. One member
has been described as an ATP synthase beta subunit
transcription termination factor rho protein.
Length = 240
Score = 28.8 bits (65), Expect = 1.2
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 3 LASLVNATGS---FHLADLGAGAG--------AAGLAVASRLHEAQILLAERSPLMAHYA 51
LA L A GS L ++GAG G A + + L E SP +
Sbjct: 6 LAQLWKALGSPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQ 65
Query: 52 RKTLALPANAQISKRISLIEVDVTLV 77
++ LA A+ + L E+ V
Sbjct: 66 KERLAGSADLLVKWLDELPELPFPGV 91
>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
family) [General function prediction only].
Length = 623
Score = 28.8 bits (64), Expect = 1.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 21 GAGAAGLAVASRLHE---AQILLAERS---------PLMAHYARKTL 55
G G AG +A+RL E +LL E PL+A + +L
Sbjct: 64 GGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSL 110
>gnl|CDD|145554 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 28.8 bits (65), Expect = 1.4
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 17 DLGAGAGAAGLAVASRLHEAQILLA-ERSPLMAHYARKTLALPANAQISKRISLIEVDVT 75
D+ AG G + +A + +A+ + A E +P Y ++ + L ++ IS I DV
Sbjct: 106 DMFAGIGPFSIPIA-KHSKAKRVYAVELNPEAVKYLKENIKL---NKVEGVISPILGDVR 161
Query: 76 LVGENRNLAGLKNNFYDHVIMNPP 99
V + D VIMN P
Sbjct: 162 DV--------ILEGVADRVIMNLP 177
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 28.0 bits (62), Expect = 2.3
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 7 VNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKR 66
+ G + DL G G GL +A R ++ E SP A++ NA +
Sbjct: 289 LELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQE------NAAANG- 339
Query: 67 ISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPP-------FNERIGTMTPDKI 112
I +E E A + D V+++PP +++ + P +I
Sbjct: 340 IDNVEFIAGDA-EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRI 391
>gnl|CDD|28801 cd00524, SORL, Superoxide reductase-like (SORL) domain; present in
a family of mononuclear non-heme iron proteins that
includes superoxide reductase and desulfoferrodoxin.
Superoxide reductase-like proteins scavenge superoxide
anion radicals as a defense mechanism against reactive
oxygen species and are found in anaerobic bacteria and
archeae, and microaerophilic Treponema pallidum. The
SORL domain contains an active iron site,
Fe[His4Cys(Glu)], which in the reduced state loses the
glutamate ligand. Superoxide reductase (class II) forms
a homotetramer with four Fe[His4Cys(Glu)] centers.
Desulfoferrodoxin (class I) is a homodimeric protein,
with each protomer comprised of two domains, the
N-terminal desulforedoxin (DSRD) domain and C-terminal
SORL domain. Each domain has a distinct iron center: the
DSRD iron center I, Fe(S-Cys)4; and the SORL iron center
II, Fe[His4Cys(Glu)]..
Length = 86
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 92 DHVIMNPPFNERIGTMTPDKIK----EEAHVMLEDSFEKWI 128
HV P E+ ++ P +K H M E+ + +WI
Sbjct: 3 KHV----PVIEKPDSVEPFDVKVKVGSVPHPMTEEHYIEWI 39
>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 27.5 bits (61), Expect = 3.0
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 14 HLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVD 73
+ D+ G G L +A + +++ + S M AR+ L + + + D
Sbjct: 54 KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QNVEFVVGD 109
Query: 74 VTLVGENRNLAGLKNNFYDHVIM 96
NL +N +D V +
Sbjct: 110 AE------NLP-FPDNSFDAVTI 125
>gnl|CDD|38163 KOG2952, KOG2952, KOG2952, Cell cycle control protein [Cell cycle
control, cell division, chromosome partitioning,
Transcription, Signal transduction mechanisms].
Length = 351
Score = 27.2 bits (60), Expect = 4.3
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 87 KNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVMLEDSFEKWIRTA 131
+ Y+ + PP N + G + + + F W+RTA
Sbjct: 211 RKPIYNASGIVPPPNWQKGYPEGGYTDDNIPLSENEDFIVWMRTA 255
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 26.9 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 21 GAGAAGLAVASRLHEA--QILLAE 42
GAG AGL+ A +L + +L+ E
Sbjct: 22 GAGLAGLSAARQLQDFGFDVLVLE 45
>gnl|CDD|176144 cd08453, PBP2_IlvR, The C-terminal substrate binding domain of
LysR-type transcriptional regulator, IlvR, involved in
the biosynthesis of isoleucine, leucine and valine;
contains type 2 periplasmic binding fold. The IlvR is
an activator of the upstream and divergently
transcribed ilvD gene, which encodes dihydroxy acid
dehydratase that participates in isoleucine, leucine,
and valine biosynthesis. As in the case of other
members of the LysR family, the expression of ilvR gene
is repressed in the presence of its own gene product.
This substrate-binding domain shows significant
homology to the type 2 periplasmic binding proteins
(PBP2), which are responsible for the uptake of a
variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 200
Score = 26.9 bits (60), Expect = 5.1
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 5 SLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERS----PLMAHYARKTLALPAN 60
L AT L L AG AG+ + A LA R PL+ LA+PA
Sbjct: 32 QLREATSDVQLEALLAGEIDAGIVIPPPGASAPPALAYRPLLSEPLV-------LAVPAA 84
Query: 61 AQISKRISLIEVDV 74
L V
Sbjct: 85 WAAEGGAPLALAAV 98
>gnl|CDD|146532 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 26.8 bits (60), Expect = 5.2
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 1 MILASLVNA---TGSFHLAD---LGAGAGAAGLAVASRLHEA 36
++LA L+NA TG L+D + GAGAAG+ +A L A
Sbjct: 7 VVLAGLLNALKITGKP-LSDQKIVFFGAGAAGIGIAELLVAA 47
>gnl|CDD|38772 KOG3564, KOG3564, KOG3564, GTPase-activating protein [General
function prediction only].
Length = 604
Score = 26.5 bits (58), Expect = 6.2
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 119 MLEDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSLEITPLHPREGEC-- 176
ED EKW RT + + L+ +S + + AR EI E +C
Sbjct: 36 DFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEK 95
Query: 177 -ASRI------LVTGRKG---MRGQLRFRYPIVLHKPNGQPYSRFVTD 214
++I L G + + +F GQP S +
Sbjct: 96 LETQIQLIKDMLKCDISGSIQLSDEQKFAL---AFLNRGQPSSSNAGN 140
>gnl|CDD|29233 cd01460, vWA_midasin, VWA_Midasin: Midasin is a member of the AAA
ATPase family. The proteins of this family are unified
by their common archetectural organization that is
based upon a conserved ATPase domain. The AAA domain of
midasin contains six tandem AAA protomers. The AAA
domains in midasin is followed by a D/E rich domain
that is following by a VWA domain. The members of this
subgroup have a conserved MIDAS motif. The function of
this domain is not exactly known although it has been
speculated to play a crucial role in midasin function..
Length = 266
Score = 26.4 bits (58), Expect = 6.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 37 QILLA-ERSPLMAHYARKTLALPANAQISKRISLIEV 72
QIL+A + S M+ K LAL + +SK ++L+EV
Sbjct: 62 QILIAIDDSKSMSENNSKKLALESLCLVSKALTLLEV 98
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 26.2 bits (57), Expect = 7.0
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 21 GAGAAGLAVASRLHEA--QILLAERSPLMAHYA 51
G+G+AG +A+RL +A +L+ E
Sbjct: 14 GSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPL 46
>gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 185
Score = 26.5 bits (58), Expect = 7.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 86 LKNNFYDHVIMNPPFNERI 104
LK +D ++NPPF +
Sbjct: 110 LKGGIFDTAVINPPFGTKK 128
>gnl|CDD|38123 KOG2912, KOG2912, KOG2912, Predicted DNA methylase [Function
unknown].
Length = 419
Score = 26.2 bits (57), Expect = 7.1
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 17 DLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANAQISKRISLIEVDVTL 76
D+G GA + +R + L E + +YA+ + + + K + + L
Sbjct: 108 DIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167
Query: 77 ---VGENRNLAGLKNNFYDHVIMNPPFNE 102
+ E YD + NPPF E
Sbjct: 168 MDALKEE------SEIIYDFCMCNPPFFE 190
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 26.3 bits (58), Expect = 7.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 6 LVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSP 45
L+N G+ LAD G A A G+ V + HE + L R+P
Sbjct: 132 LINTEGAIKLADFGL-ARAFGVPVRTYTHEV-VTLWYRAP 169
>gnl|CDD|146308 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 181
Score = 26.1 bits (58), Expect = 8.4
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 2 ILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPANA 61
ILA G + DL AG+GA GL SR + ++ E+ A TL N
Sbjct: 35 ILAPYFELGG-ARVLDLFAGSGALGLEALSR-GASSVVFVEKDKK----AVATLK--ENL 86
Query: 62 QISKRISLIEVDVTLVGEN----RNLAGLKNNFYDHVIMNPPFN 101
+ +L L + LAG K +D V ++PP+
Sbjct: 87 E-----ALGLEGAVLRMDAARALLRLAG-KGPPFDLVFLDPPYA 124
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 26.2 bits (57), Expect = 8.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 20 AGAGAAGLAVASRLHEA--QILLAERSPLMAHYARKTLALPANA 61
GAG AGLA+A L A + L ER+P + +AL NA
Sbjct: 8 VGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNA 51
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.136 0.392
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,632,404
Number of extensions: 135726
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 41
Length of query: 225
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,318,927
Effective search space: 583055145
Effective search space used: 583055145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)