Query gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 123 out of 228
Neff 4.3
Searched_HMMs 39220
Date Sun May 29 19:13:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764483.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4964 CpaC Flp pilus assembl 99.5 1.9E-13 4.7E-18 99.6 7.7 79 29-108 29-107 (455)
2 pfam02368 Big_2 Bacterial Ig-l 77.4 6 0.00015 20.0 5.7 58 34-95 11-75 (79)
3 TIGR03625 L3_bact 50S ribosoma 61.3 14 0.00035 17.9 4.8 37 75-116 2-38 (202)
4 PRK00001 rplC 50S ribosomal pr 56.5 17 0.00042 17.4 5.3 39 75-118 5-43 (212)
5 CHL00143 rpl3 ribosomal protei 49.1 22 0.00056 16.7 5.4 41 73-118 3-43 (207)
6 KOG3141 consensus 46.9 24 0.0006 16.5 4.8 73 50-127 38-114 (310)
7 pfam00370 FGGY_N FGGY family o 45.4 25 0.00064 16.4 3.4 27 74-100 1-29 (245)
8 TIGR01840 esterase_phb esteras 41.8 15 0.00037 17.8 1.5 25 63-89 105-129 (231)
9 COG4819 EutA Ethanolamine util 30.3 44 0.0011 14.9 4.9 70 50-125 124-195 (473)
10 smart00635 BID_2 Bacterial Ig- 29.1 46 0.0012 14.8 7.0 59 34-95 11-77 (81)
11 pfam11920 DUF3438 Protein of u 28.4 47 0.0012 14.7 8.0 84 33-119 31-122 (285)
12 PRK04123 ribulokinase; Provisi 27.7 49 0.0012 14.7 3.5 11 85-95 92-102 (542)
13 smart00634 BID_1 Bacterial Ig- 26.7 51 0.0013 14.6 5.2 49 61-111 2-50 (92)
14 TIGR01314 gntK_FGGY gluconate 26.4 26 0.00065 16.3 0.7 27 74-100 1-29 (506)
15 PRK10939 autoinducer-2 (AI-2) 26.4 52 0.0013 14.5 3.2 11 85-95 87-97 (521)
16 PRK01103 formamidopyrimidine-D 23.2 59 0.0015 14.2 2.2 12 38-49 55-66 (273)
17 cd01142 TroA_e Periplasmic bin 23.0 53 0.0013 14.5 1.8 36 29-64 2-37 (289)
18 pfam03524 CagX Conjugal transf 22.7 61 0.0016 14.1 8.9 72 33-107 15-89 (215)
19 TIGR02371 ala_DH_arch alanine 20.5 67 0.0017 13.9 1.9 54 28-99 250-306 (327)
20 PRK05933 type III secretion sy 20.3 61 0.0016 14.1 1.7 22 70-91 342-363 (371)
21 TIGR01311 glycerol_kin glycero 20.1 69 0.0018 13.8 3.6 31 74-104 2-35 (518)
No 1
>COG4964 CpaC Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]
Probab=99.47 E-value=1.9e-13 Score=99.57 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.1
Q ss_pred CCCCCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 67762799960828999847665027832844178998179988999960577089999879998899889999727987
Q gi|255764483|r 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 29 ~~~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
.....++.|+.||+++++++.++.+++||||+|||+..+ +.+.+||+||+.|+||+++||++|+.+...+|.|..+-..
T Consensus 29 ~~~~~t~~l~~~~~~~v~l~~~~~~i~Vg~p~iada~~~-~~~~iyi~gk~~Gtt~v~~fg~~g~~~~~~~i~v~~d~~~ 107 (455)
T COG4964 29 ASATKTLKLELGKSKTVVLPSDADDILVGDPNIADAVLL-TDRSIYILGKSVGTTNVFVFGEEGRSIVSLDIEVTRDTSG 107 (455)
T ss_pred CCHHHEEEECCCCCEEEECCCCHHEEEECCCCHHCCCCC-CCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCHHH
T ss_conf 641005761468735897246200168758202101304-7864999943788047899868885302200587348578
No 2
>pfam02368 Big_2 Bacterial Ig-like domain (group 2). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.
Probab=77.37 E-value=6 Score=20.02 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=41.3
Q ss_pred EEEEEECCEEEEECC---CCC----EEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf 799960828999847---665----02783284417899817998899996057708999987999889
Q gi|255764483|r 34 RIRIAVGQSLILQFD---VLP----KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95 (135)
Q Consensus 34 ~i~v~vgks~il~l~---~p~----~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i 95 (135)
.+.|.+|.+..|... ..+ -.-...||+||.|- ...-.++|.+.|++++.+...+|...
T Consensus 11 ~~~l~~G~t~ql~a~~~p~~a~~~~vtw~Ssn~~vAtVd----~~~G~Vta~~~G~a~Itat~~d~~~~ 75 (79)
T pfam02368 11 VASLLKGATLQLGATVLPSDASNGKVTWSSSNTSIATVS----GSTGLVTALAKGTATITATSGDNQSA 75 (79)
T ss_pred CCEEECCCEEEEEEEEEECCCCCCEEEEEECCCCEEEEE----CCCCEEEEEECEEEEEEEEECCCCEE
T ss_conf 328904987999999984667885599998999989998----99888999827189999996999868
No 3
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Probab=61.29 E-value=14 Score=17.93 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=15.5
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECC
Q ss_conf 996057708999987999889988999972798779999389
Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116 (135)
Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~ 116 (135)
++|++.|-|. +||++|..+ -+.|...+...|.=.+..
T Consensus 2 lig~KiGMT~--i~~~~G~~v---PVTVl~v~~~~V~~~kt~ 38 (202)
T TIGR03625 2 LLGKKVGMTQ--IFTEDGKAV---PVTVIEVGPNVVTQVKTV 38 (202)
T ss_pred CCEEECCCEE--EECCCCCEE---EEEEEEECCCEEEEEEEC
T ss_conf 6289658807--888999699---879999589899999921
No 4
>PRK00001 rplC 50S ribosomal protein L3; Validated
Probab=56.54 E-value=17 Score=17.44 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCE
Q ss_conf 99605770899998799988998899997279877999938923
Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTL 118 (135)
Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~ 118 (135)
++|++.|-|.+ ||++|..+- +.|...+...|.=.|..+.
T Consensus 5 lig~KiGMT~i--~~~~G~~vp---VTVl~v~p~~V~~~kt~ek 43 (212)
T PRK00001 5 ILGKKVGMTQI--FTEDGESIP---VTVIEAGPNVVTQVKTVEK 43 (212)
T ss_pred EEEEECCCEEE--ECCCCCEEE---EEEEEECCCEEEEEEEECC
T ss_conf 45996377188--889995998---7999968979999995057
No 5
>CHL00143 rpl3 ribosomal protein L3; Validated
Probab=49.14 E-value=22 Score=16.73 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=22.3
Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCE
Q ss_conf 9999605770899998799988998899997279877999938923
Q gi|255764483|r 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTL 118 (135)
Q Consensus 73 i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~ 118 (135)
+=|+|++.|-|.+ ||++|+.+.-.-|.| +.+.|.=.+..+.
T Consensus 3 ~Glig~KiGMt~i--f~~~G~~vpVTVl~v---~~~~V~~~kt~e~ 43 (207)
T CHL00143 3 IGILGTKIGMTQI--FDESGNAIPVTIVKV---GPCVITQIKTTST 43 (207)
T ss_pred CEEEEEECCCEEE--ECCCCCEEEEEEEEE---ECCEEEEEEECCC
T ss_conf 3378996376065--789994998799996---0879999981367
No 6
>KOG3141 consensus
Probab=46.89 E-value=24 Score=16.52 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCEEEEECCCCEEEEEE--ECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCC-EEEE-ECCC
Q ss_conf 65027832844178998--179988999960577089999879998899889999727987799993892-3698-1058
Q gi|255764483|r 50 LPKQVIVGDDKIVDVLA--LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT-LSFL-SCTP 125 (135)
Q Consensus 50 p~~~V~VgnP~IADv~~--l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~-~~t~-sC~p 125 (135)
|+++++.-+++.+.+.. +++.+.+=|.+.+.|.+++ ||++|+.+.-.-+.| +++.|--|+..+ ..-| +|.=
T Consensus 38 ~~~~~l~~~~~~~~~~~v~~p~s~R~GvI~~K~GMmp~--w~k~G~ri~~TiL~v---~d~~Vi~~~t~E~~~g~~avqV 112 (310)
T KOG3141 38 PAKSILLLLKEEPNARKVWIPSSRRVGVIARKLGMMPL--WDKDGERIPVTILQV---DDNHVIKYITPEAKGGYFAVQV 112 (310)
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH--HCCCCCEEEEEEEEE---ECCEEEEEECHHHCCCEEEEEE
T ss_conf 54112102767656521106776631069883257410--105797877899998---2446899855211597689996
Q ss_pred CC
Q ss_conf 87
Q gi|255764483|r 126 RC 127 (135)
Q Consensus 126 ~C 127 (135)
.|
T Consensus 113 G~ 114 (310)
T KOG3141 113 GY 114 (310)
T ss_pred CC
T ss_conf 66
No 7
>pfam00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.
Probab=45.43 E-value=25 Score=16.39 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=10.7
Q ss_pred EEEECCCCEEEE--EEECCCCCEEEEEEE
Q ss_conf 999605770899--998799988998899
Q gi|255764483|r 74 VITGKNLGSTNI--IVLGHNNDILLDTEI 100 (135)
Q Consensus 74 ~v~GK~~G~Tnl--iv~d~~g~~i~~~~i 100 (135)
|+.|-.+|+|++ .++|.+|++|....+
T Consensus 1 y~lgIDiGTt~iKa~l~d~~g~~i~~~~~ 29 (245)
T pfam00370 1 YVLGIDCGTTSTKAIVFNKQGKVVASASA 29 (245)
T ss_pred CEEEEEHHHCCEEEEEECCCCCEEEEEEE
T ss_conf 99999803002100078599999999998
No 8
>TIGR01840 esterase_phb esterase, PHB depolymerase family; InterPro: IPR010126 This entry describes a group of lipases of the ab-hydrolase family. They include bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, and feruloyl esterases from fungi.; GO: 0005576 extracellular region.
Probab=41.79 E-value=15 Score=17.77 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEEEC
Q ss_conf 899817998899996057708999987
Q gi|255764483|r 63 DVLALEKEKTVVITGKNLGSTNIIVLG 89 (135)
Q Consensus 63 Dv~~l~~~~~i~v~GK~~G~Tnliv~d 89 (135)
++ -+ ||+++||+|-+.|.-...|+.
T Consensus 105 ~~-~I-DP~rvyvTGLSaGGgmT~V~~ 129 (231)
T TIGR01840 105 NY-SI-DPNRVYVTGLSAGGGMTAVLG 129 (231)
T ss_pred CC-CC-CCCEEEEEEECCHHHHHHHHH
T ss_conf 88-63-885458842142389999887
No 9
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=30.31 E-value=44 Score=14.95 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=44.7
Q ss_pred CCEEEEECCCCEEEEEEECCCC--EEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEECCC
Q ss_conf 6502783284417899817998--899996057708999987999889988999972798779999389236981058
Q gi|255764483|r 50 LPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125 (135)
Q Consensus 50 p~~~V~VgnP~IADv~~l~~~~--~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~sC~p 125 (135)
....++-|.-.=| .+++..| .++=.--.-|+||+.+||+ |+++-..-+.+ +++++.+.|...+-+|.-.+
T Consensus 124 dLESiIAGkGaGA--~t~Se~r~t~v~NlDIGGGTtN~slFD~-Gkv~dTaCLdi---GGRLik~drst~~v~Yi~~k 195 (473)
T COG4819 124 DLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDA-GKVSDTACLDI---GGRLIKTDRSTGRVVYIHKK 195 (473)
T ss_pred CHHHHHCCCCCCC--CCHHHHHCEEEEEEECCCCCCCEEEECC-CCCCCCEEEEC---CCEEEEECCCCCEEEEECCC
T ss_conf 8788760678542--1120220337999750697231244316-63047421301---76788850565169997362
No 10
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=29.08 E-value=46 Score=14.82 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=39.0
Q ss_pred EEEEEECCEEEEECC---CCC-----EEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf 799960828999847---665-----02783284417899817998899996057708999987999889
Q gi|255764483|r 34 RIRIAVGQSLILQFD---VLP-----KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95 (135)
Q Consensus 34 ~i~v~vgks~il~l~---~p~-----~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i 95 (135)
.+.|..|....|... ... -+-...||+||-|. .... +.++|++.|.+.+.+.-.+|...
T Consensus 11 ~~~l~~G~t~~l~a~~~p~~a~~~~~vtw~Ssn~~vAtV~--~~~G-~~vta~~~G~atItat~~dg~~~ 77 (81)
T smart00635 11 TASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVV--NASG-LVVTAVAAGTATITATSGDGSSA 77 (81)
T ss_pred CCEECCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEE--CCCC-EEEEEEECCEEEEEEEECCCCCC
T ss_conf 7627149889999998046667686269980899789998--6998-29999804268999991689733
No 11
>pfam11920 DUF3438 Protein of unknown function (DUF3438). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 276 to 307 amino acids in length.
Probab=28.40 E-value=47 Score=14.75 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=58.6
Q ss_pred CEEEEEECCEEEEECCCCCEEEEECCC-CEEEEE-EECCCCEEEEEECC-CCEEEEEEECCCCCEEEEEEEEEEECCCC-
Q ss_conf 279996082899984766502783284-417899-81799889999605-77089999879998899889999727987-
Q gi|255764483|r 33 NRIRIAVGQSLILQFDVLPKQVIVGDD-KIVDVL-ALEKEKTVVITGKN-LGSTNIIVLGHNNDILLDTEIATFANEQS- 108 (135)
Q Consensus 33 ~~i~v~vgks~il~l~~p~~~V~VgnP-~IADv~-~l~~~~~i~v~GK~-~G~Tnliv~d~~g~~i~~~~i~V~~~~~~- 108 (135)
=.|.|.+||-+++.++..+ -||=| ++.+-. +.+....+|+.++. +-.|-|.+-|-+...|.-++|.-.....+
T Consensus 31 l~I~L~VgqERiVf~~~nV---rVg~P~~l~~klrVqS~gGalYL~A~e~f~~tRLqlq~~~sGeiIlLDisA~~~~~~~ 107 (285)
T pfam11920 31 LAIPLQVGQERIVFVDKNV---RVGVPAALAGKLRVQSTGGAVYLKASEAFPPTRLQLQDVDSGEVILLDIAATEKVDGQ 107 (285)
T ss_pred EEEECCCCCEEEEECCCCE---EECCCHHHCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 5565157966899748874---8788945500078888588799972598886158999669996899987625466789
Q ss_pred ----EEEEEECCCEE
Q ss_conf ----79999389236
Q gi|255764483|r 109 ----TVRVYTPGTLS 119 (135)
Q Consensus 109 ----~V~V~rg~~~~ 119 (135)
-|++.-+...+
T Consensus 108 ~~lEpVrIv~~~~~~ 122 (285)
T pfam11920 108 KPLEPVRIVYGDKVA 122 (285)
T ss_pred CCCCCEEEECCCCCC
T ss_conf 887887998068766
No 12
>PRK04123 ribulokinase; Provisional
Probab=27.68 E-value=49 Score=14.67 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.0
Q ss_pred EEEECCCCCEE
Q ss_conf 99987999889
Q gi|255764483|r 85 IIVLGHNNDIL 95 (135)
Q Consensus 85 liv~d~~g~~i 95 (135)
++.+|++|++|
T Consensus 92 ~v~~D~~G~pL 102 (542)
T PRK04123 92 PAPIDEDGTPL 102 (542)
T ss_pred EEEECCCCCEE
T ss_conf 88999999884
No 13
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=26.68 E-value=51 Score=14.56 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=37.2
Q ss_pred EEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEE
Q ss_conf 178998179988999960577089999879998899889999727987799
Q gi|255764483|r 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111 (135)
Q Consensus 61 IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~ 111 (135)
|.+.. . ++.+++--|+..-+-.+.+.|.+|++|-+..|......+..+.
T Consensus 2 ~~~l~-~-~~~~a~Adg~d~~tltatV~D~~gnpv~g~~V~f~~~~~~~~~ 50 (92)
T smart00634 2 VTTLT-A-DKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALT 50 (92)
T ss_pred EEEEE-E-CCCCEEECCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCEE
T ss_conf 05999-8-8886876791619999999979999978989999977996145
No 14
>TIGR01314 gntK_FGGY gluconate kinase; InterPro: IPR006002 Gluconate kinase (2.7.1.12 from EC) is an alpha/beta structure consisting of a twisted parallel beta-sheet surrounded by alpha-helices with overall topology similar to nucleoside monophosphate (NMP) kinases, such as adenylate kinase. Significant conformational changes are induced upon binding of ATP to the enzyme. The largest changes involve a hinge-bending motion of the NMP(bind) part and a motion of the LID with adjacent helices, which opens the cavity to the second substrate, gluconate. The opening of the active site cleft upon ATP binding is the opposite of what has been observed in the NMP kinase family so far, which usually close their active site to prevent fortuitous hydrolysis of ATP. The beta and gamma-phosphate groups of ATP bind in the predicted P-loop. A conserved lysine side-chain interacts with the gamma-phosphate group, and might promote phosphoryl transfer. ATP + D-gluconate = ADP + 6-phospho-D-gluconate. Gluconate-6-phosphate binds with its phosphate group in a similar position as the gamma-phosphate of ATP, consistent with inline phosphoryl transfer. . ; GO: 0019200 carbohydrate kinase activity, 0019521 D-gluconate metabolic process.
Probab=26.43 E-value=26 Score=16.32 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=15.6
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEE
Q ss_conf 99960577089--9998799988998899
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEI 100 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i 100 (135)
|+.|-..|+|. -++|++||+.+...++
T Consensus 1 Y~iGvD~GTTsTKaVLf~~NG~~v~~~~~ 29 (506)
T TIGR01314 1 YLIGVDIGTTSTKAVLFEENGKIVAKESI 29 (506)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEECCC
T ss_conf 93553145201133422206856741024
No 15
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=26.37 E-value=52 Score=14.53 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=4.8
Q ss_pred EEEECCCCCEE
Q ss_conf 99987999889
Q gi|255764483|r 85 IIVLGHNNDIL 95 (135)
Q Consensus 85 liv~d~~g~~i 95 (135)
++.+|++|++|
T Consensus 87 ~v~~D~~G~pl 97 (521)
T PRK10939 87 IVLYDRNGQPI 97 (521)
T ss_pred EEEECCCCCEE
T ss_conf 99999999883
No 16
>PRK01103 formamidopyrimidine-DNA glycosylase; Validated
Probab=23.18 E-value=59 Score=14.17 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=6.8
Q ss_pred EECCEEEEECCC
Q ss_conf 608289998476
Q gi|255764483|r 38 AVGQSLILQFDV 49 (135)
Q Consensus 38 ~vgks~il~l~~ 49 (135)
..||-.++.|+.
T Consensus 55 r~GK~l~~~~~~ 66 (273)
T PRK01103 55 RRGKYLLLDLDD 66 (273)
T ss_pred CCCEEEEEECCC
T ss_conf 130399998169
No 17
>cd01142 TroA_e Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.02 E-value=53 Score=14.47 Aligned_cols=36 Identities=8% Similarity=-0.177 Sum_probs=26.0
Q ss_pred CCCCCEEEEEECCEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 677627999608289998476650278328441789
Q gi|255764483|r 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64 (135)
Q Consensus 29 ~~~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv 64 (135)
++++....|+=..++-+.++.+.+||+.-++...+.
T Consensus 2 aa~a~trTvtD~~Gr~Vtv~~~p~RIv~l~~~~~e~ 37 (289)
T cd01142 2 AATAATRTITDMAGRKVTIPDEVKRIAALWGAGNAV 37 (289)
T ss_pred CCCCCCEEEECCCCCEEECCCCCCEEEECCCHHHHH
T ss_conf 977797789969899898589999799888269999
No 18
>pfam03524 CagX Conjugal transfer protein. This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.
Probab=22.69 E-value=61 Score=14.11 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=52.5
Q ss_pred CEEEEEECCEEEEEC--CCCCEEEEECCCCEEEEEEECCCCEEEEEECCCC-EEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf 279996082899984--7665027832844178998179988999960577-08999987999889988999972798
Q gi|255764483|r 33 NRIRIAVGQSLILQF--DVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG-STNIIVLGHNNDILLDTEIATFANEQ 107 (135)
Q Consensus 33 ~~i~v~vgks~il~l--~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G-~Tnliv~d~~g~~i~~~~i~V~~~~~ 107 (135)
=+|....|....|.| ++.+..+.+||+.-=.+... ..+.|+|-.+..| .|||+|.-. +=.+..++.......
T Consensus 15 ~~I~~~~g~~t~I~f~~gE~I~~v~~GDt~~W~v~~~-~~n~l~iKP~~~~~~TNl~V~Tn--kR~Y~f~L~s~~~~~ 89 (215)
T pfam03524 15 YRVVTAPGYVTTIEFGPGETIVSVAAGDTVRWEVGPT-AGNHLFIKPTEAGLDTNLTVVTN--RRTYSFELRSTPSTY 89 (215)
T ss_pred EEEEEECCEEEEEEECCCCEEEEECCCCCCCCEECCC-CCCEEEEEECCCCCCCEEEEEEC--CCEEEEEEEEECCCC
T ss_conf 9999977808999989999998853367745287158-78789998767799830899968--968999999954888
No 19
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=20.46 E-value=67 Score=13.88 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEE---EEEECCCCCEEEEEE
Q ss_conf 667762799960828999847665027832844178998179988999960577089---999879998899889
Q gi|255764483|r 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN---IIVLGHNNDILLDTE 99 (135)
Q Consensus 28 ~~~~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tn---liv~d~~g~~i~~~~ 99 (135)
++-++++|+|++.|..+= -.||- . .| . =++.||+.|.|+ +.+||.-|=-|-|..
T Consensus 250 QA~HsGEiNVp~skg~i~------------v~D~~-a-~l-G---eVi~Glk~GRtS~eeiTiFDSTGLaIQDva 306 (327)
T TIGR02371 250 QAKHSGEINVPISKGVIR------------VDDVH-A-SL-G---EVIVGLKEGRTSEEEITIFDSTGLAIQDVA 306 (327)
T ss_pred HCCCCCEEEECCCCCEEE------------EECCC-C-CC-C---CEEEECCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 200176471021377233------------21101-2-10-4---378624789878353478714665144556
No 20
>PRK05933 type III secretion system protein; Validated
Probab=20.28 E-value=61 Score=14.10 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCEEEEEEECCC
Q ss_conf 9889999605770899998799
Q gi|255764483|r 70 EKTVVITGKNLGSTNIIVLGHN 91 (135)
Q Consensus 70 ~~~i~v~GK~~G~Tnliv~d~~ 91 (135)
.--+.+.||++|.-+|+.+++.
T Consensus 342 GvdlilnG~kVgRgei~~lgdv 363 (371)
T PRK05933 342 GVDIILNGAKVGRGEIIALGDV 363 (371)
T ss_pred CEEEEECCCEECCCEEEEECCE
T ss_conf 6138972526413006864030
No 21
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=20.07 E-value=69 Score=13.79 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred EEEECCCCEEE--EEEEC-CCCCEEEEEEEEEEE
Q ss_conf 99960577089--99987-999889988999972
Q gi|255764483|r 74 VITGKNLGSTN--IIVLG-HNNDILLDTEIATFA 104 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d-~~g~~i~~~~i~V~~ 104 (135)
||..-.-|||+ -|||| ++|+++...++.++.
T Consensus 2 yi~AIDQGTTS~R~I~Fda~~g~~V~~~Q~E~~Q 35 (518)
T TIGR01311 2 YILAIDQGTTSSRAIVFDAKDGNIVASHQKEFTQ 35 (518)
T ss_pred CEEEEECCCCEEEEEEEECCCCCEEEECCEEEEE
T ss_conf 0589970764104889725557662231434576
Done!