Query gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 123 out of 228
Neff 4.3
Searched_HMMs 23785
Date Mon May 30 13:50:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764483.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f1s_A Hyaluronate lyase; the 94.2 0.19 8.2E-06 27.5 7.5 69 32-108 12-80 (814)
2 2l04_A Major tail protein V; b 93.8 0.12 5E-06 28.8 5.7 71 32-104 13-90 (91)
3 2ftc_C L3MT, MRP-L3, mitochond 56.7 10 0.00042 17.5 5.1 20 75-96 4-23 (211)
4 2w40_A Glycerol kinase, putati 56.4 9.6 0.00041 17.5 3.6 29 74-102 5-35 (503)
5 3g25_A Glycerol kinase; IDP007 41.2 18 0.00074 16.0 3.6 10 33-42 261-270 (501)
6 3ofq_D 50S ribosomal protein L 37.6 8.6 0.00036 17.8 0.9 42 75-121 4-45 (209)
7 3l0q_A Xylulose kinase; xlylul 35.6 22 0.00091 15.5 3.6 24 74-97 6-31 (554)
8 3hz6_A Xylulokinase; xylulose, 31.1 26 0.0011 15.0 4.1 30 72-101 4-35 (511)
9 3a46_A Formamidopyrimidine-DNA 30.0 16 0.00067 16.2 1.3 13 38-50 57-69 (289)
10 2zf5_O Glycerol kinase; hypert 27.6 30 0.0012 14.7 4.1 13 32-44 252-264 (497)
11 3jvp_A Ribulokinase; PSI-II, N 26.3 31 0.0013 14.5 3.6 25 74-98 6-33 (572)
12 3gpu_A DNA glycosylase; DNA gl 23.5 21 0.00089 15.5 1.0 11 38-48 56-66 (256)
13 3ifr_A Carbohydrate kinase, FG 22.8 37 0.0015 14.1 3.5 31 72-102 6-38 (508)
14 2gop_A Trilobed protease; beta 21.4 39 0.0016 14.0 6.4 21 70-90 272-292 (347)
No 1
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=94.20 E-value=0.19 Score=27.53 Aligned_cols=69 Identities=9% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 62799960828999847665027832844178998179988999960577089999879998899889999727987
Q gi|255764483|r 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 32 s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
..+|.++.+|--++..+.-.- .+.||+|+.+. + -+|++.+.|.|.+++.+.+|+.+...-+.|++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (814)
T 1f1s_A 12 EKSVNTALNKNYVFNKADYQY--TLTNPSLGKIV---G---GILYPNATGSTTVKISDKSGKIIKEVPLSVTASTED 80 (814)
T ss_dssp CSCEEEETTSCEECSSTTSEE--EESSGGGEEEE---T---TEEEECSCEEEEEEEECTTCCEEEEEEEEEECCCCS
T ss_pred HHHEECCCCCEEEECCCCEEE--EECCCCHHEEE---C---CEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCHH
T ss_conf 340423447656532664267--76386260121---6---458712588079999858997899976364377735
No 2
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=93.80 E-value=0.12 Score=28.80 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=54.9
Q ss_pred CCEEEEEECCEEEEECC---CCCE----EEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf 62799960828999847---6650----2783284417899817998899996057708999987999889988999972
Q gi|255764483|r 32 SNRIRIAVGQSLILQFD---VLPK----QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 32 s~~i~v~vgks~il~l~---~p~~----~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~ 104 (135)
...+.|.+|+...|... ..+. .-...||+||.|. - +.....+.|++.|.+.+.+...+|..-....|.|.+
T Consensus 13 ~~~~~l~vG~t~~l~~~v~P~~a~~~~~~w~Ssd~~VatV~-~-~G~~~~Vta~~~G~a~Itat~~dg~~~a~~~VtV~~ 90 (91)
T 2l04_A 13 PASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVS-V-SGMTITVNGVAAGKVNIPVVSGNGEFAAVAEITVTA 90 (91)
T ss_dssp CCCEEEETTCEEEEEEEECCSSCCCCCEEECCSCCSSCEEE-E-ETTEEEEECSSSEEEECCEEETTTTEEECCEEEEEC
T ss_pred CCCEEEECCCEEEEEEEEEECCCCCCEEEEEECCCCEEEEE-C-CCCEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 78479987988999999986877865899998999889998-8-898999999845699999999999889999999975
No 3
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=56.72 E-value=10 Score=17.46 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=9.8
Q ss_pred EEECCCCEEEEEEECCCCCEEE
Q ss_conf 9960577089999879998899
Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILL 96 (135)
Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~ 96 (135)
|+|++.|-|.+ ||++|..+.
T Consensus 4 lig~KiGMT~i--f~~~G~~vp 23 (211)
T 2ftc_C 4 LIALKLGMMPL--WTKDGQKHV 23 (211)
T ss_pred EEEEECCCCEE--ECCCCCEEE
T ss_conf 99996587077--889996988
No 4
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=56.36 E-value=9.6 Score=17.54 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=18.8
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEEEE
Q ss_conf 99960577089--999879998899889999
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEIAT 102 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V 102 (135)
||.|-..|+|+ .++||.+|+++.......
T Consensus 5 ~vlgID~GTss~Ka~l~d~~g~~i~~~~~~~ 35 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDEELNIVHSNNLNH 35 (503)
T ss_dssp EEEEEEECSSEEEEEEEETTCCEEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 9999985100210007869998999999706
No 5
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=41.18 E-value=18 Score=15.99 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=3.5
Q ss_pred CEEEEEECCE
Q ss_conf 2799960828
Q gi|255764483|r 33 NRIRIAVGQS 42 (135)
Q Consensus 33 ~~i~v~vgks 42 (135)
+.+.+..|.+
T Consensus 261 g~~~~s~GTs 270 (501)
T 3g25_A 261 GDVKNTYGTG 270 (501)
T ss_dssp TCEEEEESSS
T ss_pred CCEEEEEEEE
T ss_conf 8478875202
No 6
>3ofq_D 50S ribosomal protein L3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=37.62 E-value=8.6 Score=17.85 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=24.8
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 99605770899998799988998899997279877999938923698
Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121 (135)
Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~ 121 (135)
++|++.|-|.+ ||++|+.+ -+.|...+...|.=+|..+..-|
T Consensus 4 lig~KvGMT~v--~~~~G~~v---PVTVie~~p~~V~~~kt~ekdgY 45 (209)
T 3ofq_D 4 LVGKKVGMTRI--FTEDGVSI---PVTVIEVEANRVTQVKDLANDGY 45 (209)
T ss_dssp EEEEECCCBCC--CCSSCCCC---CEEEEECCCBEEEECCCSSSSSC
T ss_pred EEEEECCCCEE--ECCCCEEE---EEEEEEECCCEEEEEEEECCCCC
T ss_conf 98997688448--89999099---87999965989999985667896
No 7
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=35.56 E-value=22 Score=15.46 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=10.9
Q ss_pred EEEECCCCEEEE--EEECCCCCEEEE
Q ss_conf 999605770899--998799988998
Q gi|255764483|r 74 VITGKNLGSTNI--IVLGHNNDILLD 97 (135)
Q Consensus 74 ~v~GK~~G~Tnl--iv~d~~g~~i~~ 97 (135)
|+.|-..|+|++ +++|.+|+++..
T Consensus 6 Y~lgIDiGTts~Ka~l~d~~G~i~~~ 31 (554)
T 3l0q_A 6 YFIGVDVGTGSARAGVFDLQGRMVGQ 31 (554)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 79999814545254588499989999
No 8
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=31.09 E-value=26 Score=15.03 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=16.2
Q ss_pred EEEEEECCCCEEEE--EEECCCCCEEEEEEEE
Q ss_conf 89999605770899--9987999889988999
Q gi|255764483|r 72 TVVITGKNLGSTNI--IVLGHNNDILLDTEIA 101 (135)
Q Consensus 72 ~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~ 101 (135)
..||.|-..|+|++ +++|.+|+++......
T Consensus 4 ~~YilgID~GTts~Ka~l~d~~g~~v~~~~~~ 35 (511)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIA 35 (511)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 53799998512021303781889999999983
No 9
>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
Probab=29.99 E-value=16 Score=16.24 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=7.4
Q ss_pred EECCEEEEECCCC
Q ss_conf 6082899984766
Q gi|255764483|r 38 AVGQSLILQFDVL 50 (135)
Q Consensus 38 ~vgks~il~l~~p 50 (135)
..||-.++.|+..
T Consensus 57 r~GK~l~~~l~~~ 69 (289)
T 3a46_A 57 TKGKFLWFELFDP 69 (289)
T ss_dssp EETTEEEEEEEET
T ss_pred EEEEEEEEEECCC
T ss_conf 8767999995367
No 10
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1}
Probab=27.63 E-value=30 Score=14.67 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=4.9
Q ss_pred CCEEEEEECCEEE
Q ss_conf 6279996082899
Q gi|255764483|r 32 SNRIRIAVGQSLI 44 (135)
Q Consensus 32 s~~i~v~vgks~i 44 (135)
.+.+.+..|.+-.
T Consensus 252 ~g~~~~~~GTs~~ 264 (497)
T 2zf5_O 252 AGMVKATYGTGSF 264 (497)
T ss_dssp TTCEEEEESSSEE
T ss_pred CCCEEEEECCCEE
T ss_conf 9943676356459
No 11
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans}
Probab=26.32 E-value=31 Score=14.52 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=11.3
Q ss_pred EEEECCCCEEE--EEEEC-CCCCEEEEE
Q ss_conf 99960577089--99987-999889988
Q gi|255764483|r 74 VITGKNLGSTN--IIVLG-HNNDILLDT 98 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d-~~g~~i~~~ 98 (135)
|+.|-..|+|+ .++|| ++|+++...
T Consensus 6 y~LgIDiGTts~Ka~l~D~~~g~~~~~~ 33 (572)
T 3jvp_A 6 YTIGVDYGTESGRAVLIDLSNGQELADH 33 (572)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEE
T ss_pred EEEEEEECCCCEEEEEEECCCCEEEEEE
T ss_conf 7999972465528899988999099999
No 12
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 3go8_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* ...
Probab=23.45 E-value=21 Score=15.52 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=5.5
Q ss_pred EECCEEEEECC
Q ss_conf 60828999847
Q gi|255764483|r 38 AVGQSLILQFD 48 (135)
Q Consensus 38 ~vgks~il~l~ 48 (135)
..||-.++.|+
T Consensus 56 r~GK~l~~~~~ 66 (256)
T 3gpu_A 56 RRGKFLKFLLD 66 (256)
T ss_dssp EETTEEEEECS
T ss_pred ECCEEEHHHCC
T ss_conf 63288800206
No 13
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170}
Probab=22.83 E-value=37 Score=14.13 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEECCCCEEEE--EEECCCCCEEEEEEEEE
Q ss_conf 89999605770899--99879998899889999
Q gi|255764483|r 72 TVVITGKNLGSTNI--IVLGHNNDILLDTEIAT 102 (135)
Q Consensus 72 ~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V 102 (135)
.=|+.|-..|+|++ +++|.+|+++.......
T Consensus 6 ~kyvlgIDiGTts~Ka~l~d~~g~il~~~~~~~ 38 (508)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRLPDTVVAVASRPT 38 (508)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTEEEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 988999987223427789958999999999856
No 14
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=21.42 E-value=39 Score=13.96 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCEEEEEEECC
Q ss_conf 988999960577089999879
Q gi|255764483|r 70 EKTVVITGKNLGSTNIIVLGH 90 (135)
Q Consensus 70 ~~~i~v~GK~~G~Tnliv~d~ 90 (135)
...+|..+-.-|...|..+|.
T Consensus 272 ~~~~~~~~~~~g~~~l~~~dg 292 (347)
T 2gop_A 272 DGKVYFTLFEEGSVNLYIWDG 292 (347)
T ss_dssp TTEEEEEEEETTEEEEEEESS
T ss_pred CCCEEEEEECCCEEEEEECCC
T ss_conf 870899994699899999189
Done!