Query gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 135 No_of_seqs 123 out of 228 Neff 4.3 Searched_HMMs 13730 Date Wed Jun 1 08:02:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764483.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1f1sa2 b.1.18.2 (A:171-248) H 94.4 0.15 1.1E-05 26.8 9.3 67 31-105 11-77 (78) 2 d1f00i2 b.1.14.1 (I:753-841) I 47.9 8 0.00058 16.6 3.9 45 51-100 40-84 (89) 3 d2p3ra1 c.55.1.4 (A:2-253) Gly 37.4 12 0.00085 15.6 4.1 29 74-102 4-34 (252) 4 d2zjrb1 b.43.3.2 (B:1-205) Rib 20.0 24 0.0018 13.8 3.4 42 75-122 4-45 (205) 5 d1ee8a3 g.39.1.8 (A:211-266) D 19.7 25 0.0018 13.7 2.8 24 108-132 33-56 (56) 6 d2j01e1 b.43.3.2 (E:1-205) Rib 18.4 12 0.00086 15.6 0.0 44 75-124 4-47 (205) 7 d1r59o1 c.55.1.4 (O:5-256) Gly 18.3 15 0.0011 15.0 0.5 22 74-95 2-25 (252) 8 d2hoea3 c.55.1.10 (A:72-199) N 17.0 28 0.0021 13.4 2.7 34 72-105 3-38 (128) 9 d2gycb1 b.43.3.2 (B:1-209) Rib 16.4 12 0.00084 15.7 -0.4 18 75-94 4-21 (209) 10 d1zc6a1 c.55.1.5 (A:8-121) Pro 15.2 32 0.0023 13.1 2.8 26 73-98 4-31 (114) No 1 >d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]} Probab=94.37 E-value=0.15 Score=26.79 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=54.3 Q ss_pred CCCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEC Q ss_conf 762799960828999847665027832844178998179988999960577089999879998899889999727 Q gi|255764483|r 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105 (135) Q Consensus 31 ~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~ 105 (135) -..+|+++.||--++....=-. .|-||+||.+. + . ++.-.+.|+|++.+.|.+|+.+...-+.|.+. T Consensus 11 lE~~i~lpL~K~yvf~~aDY~Y--~iens~i~~V~---n-G--il~Pl~eG~T~vkVsdkdGk~vk~iPl~v~as 77 (78) T d1f1sa2 11 IEKSVNTALNKNYVFNKADYQY--TLTNPSLGKIV---G-G--ILYPNATGSTTVKISDKSGKIIKEVPLSVTAS 77 (78) T ss_dssp CCSCEEEETTSCEECSSTTSEE--EESSGGGEEEE---T-T--EEEECSCEEEEEEEECTTCCEEEEEEEEEECC T ss_pred HHHHHCCCCCCEEEEEECCEEE--EECCCCEEEEE---C-C--EEEECCCCCEEEEEECCCCCEEEEEEEEEEEC T ss_conf 7776134456102765031588--96078624663---4-2--57773368458998635896999972488707 No 2 >d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Probab=47.93 E-value=8 Score=16.62 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=32.2 Q ss_pred CEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEE Q ss_conf 50278328441789981799889999605770899998799988998899 Q gi|255764483|r 51 PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEI 100 (135) Q Consensus 51 ~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i 100 (135) --.-.-+||.||-| |...=.+++++.|++.+.+-..+|. .....| T Consensus 40 ~~twsSsd~~VAtV----d~~~G~vta~~~G~a~Itat~~~g~-~at~tv 84 (89) T d1f00i2 40 KYTWRSANPAIASV----DASSGQVTLKEKGTTTISVISSDNQ-TATYTI 84 (89) T ss_dssp CEEEEESCTTTEEE----CTTTCEEEECSSSCEEEEEEETTTE-EEEEEE T ss_pred CEEEEECCCCEEEE----ECCCCEEEEEEEEEEEEEEEECCCC-EEEEEE T ss_conf 28999799999999----7898899996608999999979999-999999 No 3 >d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]} Probab=37.39 E-value=12 Score=15.64 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.0 Q ss_pred EEEECCCCEEEE--EEECCCCCEEEEEEEEE Q ss_conf 999605770899--99879998899889999 Q gi|255764483|r 74 VITGKNLGSTNI--IVLGHNNDILLDTEIAT 102 (135) Q Consensus 74 ~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V 102 (135) |+.|-.+|+|++ ++||.+|++|....... T Consensus 4 y~lgiDiGTssvKa~l~d~~g~~~~~~~~~~ 34 (252) T d2p3ra1 4 YIVALDQGTTSSRAVVMDHDANIISVSQREF 34 (252) T ss_dssp EEEEEEECSSEEEEEEECTTCCEEEEEEEEC T ss_pred EEEEEEECCCCEEEEEEECCCCEEEEEEEEC T ss_conf 9999982023456558929898999998617 No 4 >d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Probab=19.95 E-value=24 Score=13.77 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=26.7 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEE Q ss_conf 996057708999987999889988999972798779999389236981 Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122 (135) Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~s 122 (135) ++|++.|-|.++ |+ |+.+ -+.|...+...|.-+|..+..-|. T Consensus 4 lig~KiGMT~i~--~~-g~~v---pVTVle~~p~~V~~~kt~ekdGY~ 45 (205) T d2zjrb1 4 ILGTKIGMTQIW--KN-DRAI---PVTVVLAGPCPIVQRKTAQTDGYE 45 (205) T ss_dssp EEEEEEEEEEEE--ET-TEEE---EEEEEECCCEEEEEEECTTTTSSC T ss_pred EEEEECCCEEEE--EC-CCEE---EEEEEEECCCEEEEEEEECCCCCE T ss_conf 989962552588--59-9989---989999678889998820357976 No 5 >d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=19.73 E-value=25 Score=13.74 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=16.9 Q ss_pred CEEEEEECCCEEEEECCCCCCCCCC Q ss_conf 7799993892369810588765489 Q gi|255764483|r 108 STVRVYTPGTLSFLSCTPRCLPSSP 132 (135) Q Consensus 108 ~~V~V~rg~~~~t~sC~p~C~p~~~ 132 (135) ..|.-..-++|+||-| |.|++.-| T Consensus 33 ~~I~~~~~~~R~t~~C-p~CQ~~~p 56 (56) T d1ee8a3 33 RPVERRVVAGRGTHFC-PTCQGEGP 56 (56) T ss_dssp CBCEEEESSSCEEEEC-TTTTTCCC T ss_pred CEEEEEEECCCCCEEC-CCCCCCCC T ss_conf 6378999989758899-57427987 No 6 >d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Probab=18.44 E-value=12 Score=15.61 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=26.8 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEECC Q ss_conf 99605770899998799988998899997279877999938923698105 Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCT 124 (135) Q Consensus 75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~sC~ 124 (135) +.|++.|-|.++ | +|..+ -+.|.......|.-++.....-|..- T Consensus 4 liG~KiGMT~i~--~-~g~~v---pVTVlev~p~~Vv~vkt~ekdgy~av 47 (205) T d2j01e1 4 ILGVKVGMTRIF--R-DDRAV---PVTVILAGPCPVVQRRTPEKDGYTAV 47 (205) T ss_dssp CEEEEEEEEEEE--E-TTEEE---EEEEEEECCBCCCCBCCTTTTSSCCB T ss_pred EEEEECCCEEEE--E-CCCEE---EEEEEEECCCEEEEEEEECCCCCCCE T ss_conf 979954875699--3-89989---78999958979999993124787212 No 7 >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Probab=18.30 E-value=15 Score=14.99 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=8.1 Q ss_pred EEEECCCCEEEE--EEECCCCCEE Q ss_conf 999605770899--9987999889 Q gi|255764483|r 74 VITGKNLGSTNI--IVLGHNNDIL 95 (135) Q Consensus 74 ~v~GK~~G~Tnl--iv~d~~g~~i 95 (135) |+.|-.+|+|++ +++|.+|+++ T Consensus 2 yvlgiDiGTtsvKa~l~D~~g~~~ 25 (252) T d1r59o1 2 YVMAIDQGTTSSRAIIFDRNGKKI 25 (252) T ss_dssp EEEEEBCCSSBCBCCEECSSSCBC T ss_pred EEEEEEECCCCEEEEEEECCCCEE T ss_conf 799998422343535894879899 No 8 >d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=17.04 E-value=28 Score=13.37 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.3 Q ss_pred EEEEEECCCCEEEE--EEECCCCCEEEEEEEEEEEC Q ss_conf 89999605770899--99879998899889999727 Q gi|255764483|r 72 TVVITGKNLGSTNI--IVLGHNNDILLDTEIATFAN 105 (135) Q Consensus 72 ~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~~~ 105 (135) --|+.|-..|.|++ .++|.+|+++....+..... T Consensus 3 ~~~~igidig~~~i~~~l~d~~G~il~~~~~~~~~~ 38 (128) T d2hoea3 3 CAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQ 38 (128) T ss_dssp GCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCSS T ss_pred CEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCC T ss_conf 579999999999999999959998999998851457 No 9 >d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Probab=16.43 E-value=12 Score=15.67 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=8.1 Q ss_pred EEECCCCEEEEEEECCCCCE Q ss_conf 99605770899998799988 Q gi|255764483|r 75 ITGKNLGSTNIIVLGHNNDI 94 (135) Q Consensus 75 v~GK~~G~Tnliv~d~~g~~ 94 (135) +.|++.|-|. +||++|+. T Consensus 4 lig~KiGMT~--v~~~~G~~ 21 (209) T d2gycb1 4 LVGKKVGMTR--IFTEDGVS 21 (209) T ss_dssp CEEEEEEEEE--CCCSSSCC T ss_pred EEEEECCCCE--EECCCCCE T ss_conf 7699638836--88899969 No 10 >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Probab=15.23 E-value=32 Score=13.10 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.6 Q ss_pred EEEEECCCCEEE--EEEECCCCCEEEEE Q ss_conf 999960577089--99987999889988 Q gi|255764483|r 73 VVITGKNLGSTN--IIVLGHNNDILLDT 98 (135) Q Consensus 73 i~v~GK~~G~Tn--liv~d~~g~~i~~~ 98 (135) =|+.|-..|.|+ ..++|++|++|... T Consensus 4 ~y~lGID~GGT~tk~~l~d~~G~il~~~ 31 (114) T d1zc6a1 4 RYLIGVDGGGTGTRIRLHASDGTPLAMA 31 (114) T ss_dssp CEEEEEEECSSCEEEEEEETTCCEEEEE T ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEE T ss_conf 6899998470108999994999899999 Done!