Query         gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs    123 out of 228
Neff          4.3 
Searched_HMMs 13730
Date          Wed Jun  1 08:02:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764483.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1f1sa2 b.1.18.2 (A:171-248) H  94.4    0.15 1.1E-05   26.8   9.3   67   31-105    11-77  (78)
  2 d1f00i2 b.1.14.1 (I:753-841) I  47.9       8 0.00058   16.6   3.9   45   51-100    40-84  (89)
  3 d2p3ra1 c.55.1.4 (A:2-253) Gly  37.4      12 0.00085   15.6   4.1   29   74-102     4-34  (252)
  4 d2zjrb1 b.43.3.2 (B:1-205) Rib  20.0      24  0.0018   13.8   3.4   42   75-122     4-45  (205)
  5 d1ee8a3 g.39.1.8 (A:211-266) D  19.7      25  0.0018   13.7   2.8   24  108-132    33-56  (56)
  6 d2j01e1 b.43.3.2 (E:1-205) Rib  18.4      12 0.00086   15.6   0.0   44   75-124     4-47  (205)
  7 d1r59o1 c.55.1.4 (O:5-256) Gly  18.3      15  0.0011   15.0   0.5   22   74-95      2-25  (252)
  8 d2hoea3 c.55.1.10 (A:72-199) N  17.0      28  0.0021   13.4   2.7   34   72-105     3-38  (128)
  9 d2gycb1 b.43.3.2 (B:1-209) Rib  16.4      12 0.00084   15.7  -0.4   18   75-94      4-21  (209)
 10 d1zc6a1 c.55.1.5 (A:8-121) Pro  15.2      32  0.0023   13.1   2.8   26   73-98      4-31  (114)

No 1  
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}
Probab=94.37  E-value=0.15  Score=26.79  Aligned_cols=67  Identities=9%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             CCCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             762799960828999847665027832844178998179988999960577089999879998899889999727
Q gi|255764483|r   31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN  105 (135)
Q Consensus        31 ~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~  105 (135)
                      -..+|+++.||--++....=-.  .|-||+||.+.   + .  ++.-.+.|+|++.+.|.+|+.+...-+.|.+.
T Consensus        11 lE~~i~lpL~K~yvf~~aDY~Y--~iens~i~~V~---n-G--il~Pl~eG~T~vkVsdkdGk~vk~iPl~v~as   77 (78)
T d1f1sa2          11 IEKSVNTALNKNYVFNKADYQY--TLTNPSLGKIV---G-G--ILYPNATGSTTVKISDKSGKIIKEVPLSVTAS   77 (78)
T ss_dssp             CCSCEEEETTSCEECSSTTSEE--EESSGGGEEEE---T-T--EEEECSCEEEEEEEECTTCCEEEEEEEEEECC
T ss_pred             HHHHHCCCCCCEEEEEECCEEE--EECCCCEEEEE---C-C--EEEECCCCCEEEEEECCCCCEEEEEEEEEEEC
T ss_conf             7776134456102765031588--96078624663---4-2--57773368458998635896999972488707


No 2  
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}
Probab=47.93  E-value=8  Score=16.62  Aligned_cols=45  Identities=22%  Similarity=0.206  Sum_probs=32.2

Q ss_pred             CEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             50278328441789981799889999605770899998799988998899
Q gi|255764483|r   51 PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEI  100 (135)
Q Consensus        51 ~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i  100 (135)
                      --.-.-+||.||-|    |...=.+++++.|++.+.+-..+|. .....|
T Consensus        40 ~~twsSsd~~VAtV----d~~~G~vta~~~G~a~Itat~~~g~-~at~tv   84 (89)
T d1f00i2          40 KYTWRSANPAIASV----DASSGQVTLKEKGTTTISVISSDNQ-TATYTI   84 (89)
T ss_dssp             CEEEEESCTTTEEE----CTTTCEEEECSSSCEEEEEEETTTE-EEEEEE
T ss_pred             CEEEEECCCCEEEE----ECCCCEEEEEEEEEEEEEEEECCCC-EEEEEE
T ss_conf             28999799999999----7898899996608999999979999-999999


No 3  
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=37.39  E-value=12  Score=15.64  Aligned_cols=29  Identities=21%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             EEEECCCCEEEE--EEECCCCCEEEEEEEEE
Q ss_conf             999605770899--99879998899889999
Q gi|255764483|r   74 VITGKNLGSTNI--IVLGHNNDILLDTEIAT  102 (135)
Q Consensus        74 ~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V  102 (135)
                      |+.|-.+|+|++  ++||.+|++|.......
T Consensus         4 y~lgiDiGTssvKa~l~d~~g~~~~~~~~~~   34 (252)
T d2p3ra1           4 YIVALDQGTTSSRAVVMDHDANIISVSQREF   34 (252)
T ss_dssp             EEEEEEECSSEEEEEEECTTCCEEEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEEECCCCEEEEEEEEC
T ss_conf             9999982023456558929898999998617


No 4  
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=19.95  E-value=24  Score=13.77  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=26.7

Q ss_pred             EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf             996057708999987999889988999972798779999389236981
Q gi|255764483|r   75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS  122 (135)
Q Consensus        75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~s  122 (135)
                      ++|++.|-|.++  |+ |+.+   -+.|...+...|.-+|..+..-|.
T Consensus         4 lig~KiGMT~i~--~~-g~~v---pVTVle~~p~~V~~~kt~ekdGY~   45 (205)
T d2zjrb1           4 ILGTKIGMTQIW--KN-DRAI---PVTVVLAGPCPIVQRKTAQTDGYE   45 (205)
T ss_dssp             EEEEEEEEEEEE--ET-TEEE---EEEEEECCCEEEEEEECTTTTSSC
T ss_pred             EEEEECCCEEEE--EC-CCEE---EEEEEEECCCEEEEEEEECCCCCE
T ss_conf             989962552588--59-9989---989999678889998820357976


No 5  
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=19.73  E-value=25  Score=13.74  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=16.9

Q ss_pred             CEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf             7799993892369810588765489
Q gi|255764483|r  108 STVRVYTPGTLSFLSCTPRCLPSSP  132 (135)
Q Consensus       108 ~~V~V~rg~~~~t~sC~p~C~p~~~  132 (135)
                      ..|.-..-++|+||-| |.|++.-|
T Consensus        33 ~~I~~~~~~~R~t~~C-p~CQ~~~p   56 (56)
T d1ee8a3          33 RPVERRVVAGRGTHFC-PTCQGEGP   56 (56)
T ss_dssp             CBCEEEESSSCEEEEC-TTTTTCCC
T ss_pred             CEEEEEEECCCCCEEC-CCCCCCCC
T ss_conf             6378999989758899-57427987


No 6  
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]}
Probab=18.44  E-value=12  Score=15.61  Aligned_cols=44  Identities=14%  Similarity=0.159  Sum_probs=26.8

Q ss_pred             EEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCEEEEECC
Q ss_conf             99605770899998799988998899997279877999938923698105
Q gi|255764483|r   75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCT  124 (135)
Q Consensus        75 v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V~rg~~~~t~sC~  124 (135)
                      +.|++.|-|.++  | +|..+   -+.|.......|.-++.....-|..-
T Consensus         4 liG~KiGMT~i~--~-~g~~v---pVTVlev~p~~Vv~vkt~ekdgy~av   47 (205)
T d2j01e1           4 ILGVKVGMTRIF--R-DDRAV---PVTVILAGPCPVVQRRTPEKDGYTAV   47 (205)
T ss_dssp             CEEEEEEEEEEE--E-TTEEE---EEEEEEECCBCCCCBCCTTTTSSCCB
T ss_pred             EEEEECCCEEEE--E-CCCEE---EEEEEEECCCEEEEEEEECCCCCCCE
T ss_conf             979954875699--3-89989---78999958979999993124787212


No 7  
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=18.30  E-value=15  Score=14.99  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=8.1

Q ss_pred             EEEECCCCEEEE--EEECCCCCEE
Q ss_conf             999605770899--9987999889
Q gi|255764483|r   74 VITGKNLGSTNI--IVLGHNNDIL   95 (135)
Q Consensus        74 ~v~GK~~G~Tnl--iv~d~~g~~i   95 (135)
                      |+.|-.+|+|++  +++|.+|+++
T Consensus         2 yvlgiDiGTtsvKa~l~D~~g~~~   25 (252)
T d1r59o1           2 YVMAIDQGTTSSRAIIFDRNGKKI   25 (252)
T ss_dssp             EEEEEBCCSSBCBCCEECSSSCBC
T ss_pred             EEEEEEECCCCEEEEEEECCCCEE
T ss_conf             799998422343535894879899


No 8  
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=17.04  E-value=28  Score=13.37  Aligned_cols=34  Identities=12%  Similarity=0.166  Sum_probs=26.3

Q ss_pred             EEEEEECCCCEEEE--EEECCCCCEEEEEEEEEEEC
Q ss_conf             89999605770899--99879998899889999727
Q gi|255764483|r   72 TVVITGKNLGSTNI--IVLGHNNDILLDTEIATFAN  105 (135)
Q Consensus        72 ~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~~~  105 (135)
                      --|+.|-..|.|++  .++|.+|+++....+.....
T Consensus         3 ~~~~igidig~~~i~~~l~d~~G~il~~~~~~~~~~   38 (128)
T d2hoea3           3 CAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQ   38 (128)
T ss_dssp             GCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCSS
T ss_pred             CEEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             579999999999999999959998999998851457


No 9  
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=16.43  E-value=12  Score=15.67  Aligned_cols=18  Identities=22%  Similarity=0.473  Sum_probs=8.1

Q ss_pred             EEECCCCEEEEEEECCCCCE
Q ss_conf             99605770899998799988
Q gi|255764483|r   75 ITGKNLGSTNIIVLGHNNDI   94 (135)
Q Consensus        75 v~GK~~G~Tnliv~d~~g~~   94 (135)
                      +.|++.|-|.  +||++|+.
T Consensus         4 lig~KiGMT~--v~~~~G~~   21 (209)
T d2gycb1           4 LVGKKVGMTR--IFTEDGVS   21 (209)
T ss_dssp             CEEEEEEEEE--CCCSSSCC
T ss_pred             EEEEECCCCE--EECCCCCE
T ss_conf             7699638836--88899969


No 10 
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}
Probab=15.23  E-value=32  Score=13.10  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             EEEEECCCCEEE--EEEECCCCCEEEEE
Q ss_conf             999960577089--99987999889988
Q gi|255764483|r   73 VVITGKNLGSTN--IIVLGHNNDILLDT   98 (135)
Q Consensus        73 i~v~GK~~G~Tn--liv~d~~g~~i~~~   98 (135)
                      =|+.|-..|.|+  ..++|++|++|...
T Consensus         4 ~y~lGID~GGT~tk~~l~d~~G~il~~~   31 (114)
T d1zc6a1           4 RYLIGVDGGGTGTRIRLHASDGTPLAMA   31 (114)
T ss_dssp             CEEEEEEECSSCEEEEEEETTCCEEEEE
T ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEE
T ss_conf             6899998470108999994999899999


Done!