BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK
Sbjct: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF
Sbjct: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
Query: 121 LSCTPRCLPSSPPVR 135
LSCTPRCLPSSPPVR
Sbjct: 121 LSCTPRCLPSSPPVR 135
>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
Length = 159
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
G+ T ED +R+ + Q+ IL+ D +VI+G++K+ D + KT+V+
Sbjct: 26 LAGMATVPGTAHAEDP--LLRVVMNQARILKLDRPVSKVIIGNEKVADA-TVADPKTIVL 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
TG++ G+TN+++L + + D I +E +TVR+Y + LSCTP C S
Sbjct: 83 TGRSFGTTNLVLLDSQGNAIFDERILVSIDEANTVRLYKQTQRTVLSCTPSCEQHS 138
>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 139
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 9 IKNETVRKKGIPTTAS---QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
I+ T G+ A Q + + +R+ + + +L+ D +VIVG+ ++ D
Sbjct: 3 IRGRTAFLAGVAAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADA- 61
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
+ KT+V+TG++ G+TNI++L + + ++D I +E +TVRV+ S LSCTP
Sbjct: 62 TVADPKTIVLTGRSFGTTNIVLLDADGNAIVDERILVSIDEGNTVRVFRQTNRSVLSCTP 121
Query: 126 RCL 128
C
Sbjct: 122 NCE 124
>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R R R I A+ E S I + V Q+ +++ ++VG+ I
Sbjct: 7 RGRSRVSVIGVSFAAAILLGAATAPAEVISEPISVNVDQAKLVRLPGPIATIVVGNPLIA 66
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
DV L+ VV+TGK G+TN+I + I++D I V VY S
Sbjct: 67 DV-TLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQVVTVYRGLERESYS 125
Query: 123 CTPRCL 128
C P C
Sbjct: 126 CMPICQ 131
>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
Length = 135
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 4 SGKTIFFAGMIAVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 128 LPSS 131
+
Sbjct: 123 EQHA 126
>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
Length = 136
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 4 SGKTVFFAGMIAVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 128 LPSS 131
+
Sbjct: 123 EQHA 126
>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
Length = 151
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 4 SGKTVFFAGMIAVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 128 LPSS 131
+
Sbjct: 123 EQHA 126
>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 136
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
S + + + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G
Sbjct: 18 GVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFG 76
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+TN+++L + + +LD I +E +TVRVY S LSCTP C +
Sbjct: 77 TTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCEQHA 126
>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
Length = 136
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 4 SGKTVFFAGMIAVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
Query: 128 LPSS 131
+
Sbjct: 123 EQHA 126
>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
Length = 124
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
S + + + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G
Sbjct: 6 GVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFG 64
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+TN+++L + + +LD I +E +TVRVY S LSCTP C +
Sbjct: 65 TTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCEQHA 114
>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
Length = 156
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I ++ E + I IAV + ILQ D VI+G+ IVD+ L +E+ +V+TG
Sbjct: 15 AILVGSTPAVAEAKKDMIAIAVDHARILQIDRGAGTVIIGNPAIVDIEVLSEER-LVLTG 73
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
K+ G TN+I+L +N +L+D ++A E+STVRVY +C P+C P+
Sbjct: 74 KSYGITNVIILDRDNSVLMDEQVAVQTFEESTVRVYRQANRQTYACAPKCEPT 126
>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
Length = 165
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
E ++ I + V Q+ +++ ++VG+ I DV L+ +V+TGK G+TN I
Sbjct: 29 AESTADTIAVNVDQAKLVRLPGKVATIVVGNPLIADV-TLQPGGMIVVTGKGYGATNFIA 87
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L +IL+D +I V VY SC P C
Sbjct: 88 LDRGGEILVDRQIQVEGPSDRLVTVYRGVERESYSCMPICQ 128
>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 139
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T P + I + Q+ IL+ V++G+ I D + ++ +T+V+TGK+
Sbjct: 22 MTVFAAIPASAEDYIALETSQARILRLARPADSVVIGNPSIADAV-VQDAQTIVLTGKDF 80
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
G TNI+V+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 81 GVTNIVVMDKQGEPILDRELVVSRNARGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
Length = 127
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A+ + + +R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G
Sbjct: 9 GAAAQPVFAQDDILRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFG 67
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+TN+++L + ++D I +E +TVRV+ + LSCTP C S
Sbjct: 68 TTNLVLLDAEGNPIVDERILVSIDEGNTVRVFRQTERTVLSCTPNCEQHS 117
>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
D+ + + + V + I+Q D VIVG+ IVDV L + +V+TG++ G TN
Sbjct: 23 NAAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNR-LVLTGRSYGITN 81
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+++L N DI++D ++A + E +TVRVY + +C P+C P+
Sbjct: 82 LVILDANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPT 127
>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 170
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 1 MHRKRQREIK---NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVG 57
MHR ++ +R + + ++ + + QS +L +VIVG
Sbjct: 1 MHRGAKKIAASHAGSILRTGIVAAIVALSAAGASAGDLIVRYDQSQLLHLPRPASEVIVG 60
Query: 58 DDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ I DV L+ +V+TGK G TN+I L ++++ D + ++ TV ++ T
Sbjct: 61 NPSIADV-TLQDGNLLVVTGKTFGITNVIALDAAHNVIQDQRVMVERDDTRTVNLHKGST 119
Query: 118 LSFLSCTPRCLPS 130
+CTP C P+
Sbjct: 120 RFTYACTPNCEPT 132
>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
Length = 136
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ S + + +R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G
Sbjct: 18 SGSLQPVFAQEDILRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFG 76
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+TN+++L + ++D I +E +TVRV+ + LSCTP C S
Sbjct: 77 TTNLVLLDAEGNPIVDERILVSIDEGNTVRVFRQTERTVLSCTPNCEQHS 126
>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
Length = 145
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + V Q+ +++ ++VG+ I DV L+ +V+TGK+ G+TN I + +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQV 74
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L+D +I V VY SC P C
Sbjct: 75 LVDRQIQVAGPTDRLVTVYRGVDRETYSCMPVCQ 108
>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 161
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R R R I + E S+ I + V Q+ +++ ++VG+ I
Sbjct: 7 RGRSRASVVGLSLATAILLGPTAALAEVTSDPISVNVDQAKLVKLPGHIATIVVGNPLIA 66
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
DV L+ VV+TGK G+TN+I + IL+D I V VY S
Sbjct: 67 DV-TLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVTVYRGVERESYS 125
Query: 123 CTPRCL 128
C P C
Sbjct: 126 CMPVCQ 131
>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
Length = 136
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S T + + IR+ + + IL+ D +VI+G+ + DV + +T+V+TGK+ G+T
Sbjct: 24 SPLTAVADEDLIRVFMDHARILKLDRTVSKVIIGNAAVADV-TVSDPRTIVLTGKSYGTT 82
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSP 132
N+++L + ++D I +E +T+RV+ S SC+P C P
Sbjct: 83 NLVILDQEGEAIVDERILVSVDEANTLRVFKQTARSVYSCSPSCEEHKP 131
>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
Length = 163
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ E S I + V Q+ +++ ++VG+ I DV L+ VV+T
Sbjct: 21 AVMLLGPVAAPAEVTSEPISVNVDQAKLVRLPGHIATIVVGNPLIADV-TLQPGGLVVVT 79
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
GK G+TN+I + IL+D I V VY SC P C
Sbjct: 80 GKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVTVYRGLERESYSCMPICQ 131
>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
Length = 141
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +R+ + + +L+ D +VI+G+ + D + KT+V+TG+N G+TN+++L
Sbjct: 30 DAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVADA-TVADSKTIVLTGRNFGTTNLVIL 88
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+ + ++D I +E +T+RVY T + SC+P C +
Sbjct: 89 DQDGNAIVDERILVSIDEGNTLRVYKQTTRTVFSCSPNCERHA 131
>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
Length = 139
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 18 GIPTTASQKTPEDNSNR-IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G A + ++ I + Q+ IL+ V++G+ I D + ++ +T+V+T
Sbjct: 18 GAAFMAVIAVAQASAEDYIALETSQARILRLARPADSVVIGNPSIADAV-VQDAQTIVLT 76
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
GK+ G TNI+V+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 77 GKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
Length = 162
Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I + V Q+ +++ ++VG+ I DV L+ VV+TGK G+TN+I +
Sbjct: 29 AGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADV-TLQPGGMVVVTGKGYGATNVIAM 87
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
I+ D I V VY SC P C
Sbjct: 88 DRKGAIVADRLIQVEGPSDKVVTVYRGIDRESYSCAPICE 127
>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 164
Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
R + T+ + I ++V Q+ +++ ++VG+ I DV A
Sbjct: 8 RMRAALVMSSFVFGLTSLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADV-A 66
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
++ VV+TGK G+TN+I + ++ D I V VY SCTP
Sbjct: 67 MQPGGMVVVTGKGYGATNVIAMDRKGAVIADRLIQVEGPMDKVVTVYRGVDRESYSCTPL 126
Query: 127 CL 128
C
Sbjct: 127 CQ 128
>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 165
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A E + I + V Q+ +++F ++VG+ I DV L+ +V+TGK G+
Sbjct: 26 ALPAMAETANGIIAVNVDQAKLVRFPARIATIVVGNPLIADV-TLQPGGIIVVTGKGYGA 84
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
TN+I + ++LLD I V +Y SCTP C
Sbjct: 85 TNVIAMDRAGEVLLDRVIQVEGPTDQVVTIYRGVDRESYSCTPLCQ 130
>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 161
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
S + + + V Q+ +++ ++VG+ I DV L+ VV+TGK G+
Sbjct: 23 MSSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADV-TLQPGGMVVVTGKGYGA 81
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
TN+I + ++ D I + V VY SC P C
Sbjct: 82 TNVIAMDRKGAVIADRLIQVEGPMDNVVTVYRGVERESYSCMPVCQ 127
>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
Length = 161
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + V ++ + + VIVG+ I DV A+ TVVITGK+ GSTN++
Sbjct: 23 SAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADV-AMHDASTVVITGKSYGSTNLV 81
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+L NN+ ++D I A+++ TV V+ SC P C P+
Sbjct: 82 ILDDNNEPIIDEVITVKASDEGTVFVHRNTARQSYSCAPECEPT 125
>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 145
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + V Q+ +++ ++VG+ I DV L+ +V+TGK+ G+TN I + +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQV 74
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L+D +I V VY SC P C
Sbjct: 75 LIDRQIQVAGPTDRLVTVYRGVDRETYSCMPICQ 108
>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 172
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
G+ +ASQ ++ + +S L V+VG+ I DV +E K +
Sbjct: 21 AACAGLAVSASQAAD------FQVEMNKSKALHLGQPASTVMVGNPSIADV-TVEGSKLL 73
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
+ G++ G TNII L + + +LD + + STV + G +CTPRC
Sbjct: 74 YVMGRSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTRGGGQYTYNCTPRCE 128
>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 136
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ V +
Sbjct: 4 SGKTIFFAGMIAVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGN-AAVADATV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122
Query: 128 LPS 130
Sbjct: 123 EQH 125
>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 140
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
KR + T G + + E+ +R+ + + +L+ D +VI+G+ + D
Sbjct: 8 KRVAMLAFLTTALSGGHAPSGARAAEE---MMRVYMDHARVLKLDRPVSKVIIGNSDVAD 64
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ KT+V+TG+N G+TN+++L + + ++D I +E +TVRVY + LSC
Sbjct: 65 A-TVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSIDEGNTVRVYKQTVRTVLSC 123
Query: 124 TPRCL 128
TP C
Sbjct: 124 TPNCE 128
>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
SL003B-26A1]
gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
SL003B-26A1]
Length = 157
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + V ++ + + + VIVG+ I DV + TVV+TGK G+TN++
Sbjct: 23 AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADV-TMHDRFTVVVTGKTFGTTNLV 81
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+L ++ ++D I E V V SC+P C P+
Sbjct: 82 ILDKDSQPIIDEVIVVRPPETDVVTVTRNLNRYSYSCSPTCEPT 125
>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens DM4]
Length = 160
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN
Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTN 86
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+I L +L ++ I+ A + S + V SCTP C PS
Sbjct: 87 LIALDGKGAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 132
>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
Length = 166
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T S+ N I + + Q+ +L +IVG+ + V A+ T+++TG +
Sbjct: 53 TMVSEAANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATV-AVHDNHTLLLTGLSF 111
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQ-STVRVYTPGTLSFLSCTPRCLP 129
G+TN+IVL + +++ T+ V + +C+ +C P
Sbjct: 112 GTTNLIVLDSVGRPIHKSQLMVSERTGSGTLTVARGQETNTYACSNKCRP 161
>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
AM1]
gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens AM1]
Length = 160
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN
Sbjct: 28 RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTN 86
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+I L +L ++ I+ A + S + V SCTP C PS
Sbjct: 87 LIALDGKGAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 132
>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 136
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 10 KNETVRKKGIPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ V +
Sbjct: 4 SGKTIFFAGMIAVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGN-AAVADATV 62
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 63 ADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122
Query: 128 LPSS 131
+
Sbjct: 123 EQHA 126
>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 206
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 72/128 (56%), Positives = 94/128 (73%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
+++R + K T S + ++ RIRIA+GQS++L+FD LP +VI+G+D+I D
Sbjct: 76 EKRRTEIQKNATKPRTTNTPSPQPTTNDEKRIRIAIGQSIVLKFDSLPSEVIIGNDQITD 135
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
VLALEKEK++VITGK G TNIIVLG N +LL+T+I +F NE TVRVYTP LSFLSC
Sbjct: 136 VLALEKEKSIVITGKKSGLTNIIVLGAGNKVLLETDILSFPNEHDTVRVYTPEKLSFLSC 195
Query: 124 TPRCLPSS 131
TPRCLP+S
Sbjct: 196 TPRCLPNS 203
>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 102
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ + +L+ D +VIVG+ ++ D + KT+V+TG++ G+TN+++L + + +LD
Sbjct: 1 MDHARVLKLDRPVSKVIVGNAQVADA-TVADAKTIVLTGRSFGTTNLVLLDADGNAILDE 59
Query: 99 EIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
I +E +TVRVY S LSCTP C
Sbjct: 60 RILVSIDEGNTVRVYRQTERSVLSCTPNCE 89
>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+R+ + + +L+ D +VI+G+ ++ D + KT+V+TG+N G+TN+++
Sbjct: 27 ARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVADA-TVADAKTIVLTGRNFGTTNLVI 85
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L + + ++D I +E +TVRVY + LSCTP C
Sbjct: 86 LDQDGNAMVDERILVSIDEGNTVRVYKQTVRTVLSCTPNCE 126
>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 155
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + + + + ++ +++ + +I+G+ + DV L+ + +V+TGK
Sbjct: 16 VAVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGK 75
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ G+TN+I+L + +++ I V V +C+P C P+
Sbjct: 76 SFGTTNLILLDESGGEVVEQTITVTPASDKLV-VLRGSRRESYACSPDCSPA 126
>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
Length = 154
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S + + V ++ + + + VIVG+ I DV A+ + TVVITGK+ G+T
Sbjct: 17 STTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADV-AMFDQNTVVITGKSYGTT 75
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
N+++L +N ++D I A++ V VY + LSC P C P
Sbjct: 76 NLVILDGDNKPIVDETITVKASDDDVVSVYRKVSRESLSCNPACEP 121
>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 160
Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN+I
Sbjct: 31 DPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIA 89
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L +L ++ I+ A + S + V SCTP C P+
Sbjct: 90 LDGRGAMLAESTISVQAAQASIITVQRGLDRESYSCTPNCQPA 132
>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 161
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A + + ++V + I++ V+VG+ I DV L++ V++TGK+ G
Sbjct: 27 VAQALEAGADPGMVVVSVDNAKIIRLPERTATVVVGNPIIADV-TLQRNGIVILTGKSFG 85
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
STN+I L +L ++ I+ A S V V SCTP C PS
Sbjct: 86 STNLIALDAAGTMLAESFISVQAATSSVVTVQRGLERESYSCTPACQPS 134
>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
CM4]
gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 159
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN+
Sbjct: 28 ANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTNL 86
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
I L +L ++ I+ A + S + V SCTP C PS
Sbjct: 87 IALDGKGAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 131
>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 141
Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++V
Sbjct: 22 PARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADA-SVQDASTIVLTGKGFGVTNLVV 80
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L ++D ++ S+VR+Y + +SCTP C S
Sbjct: 81 LDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYCESS 123
>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
Length = 129
Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
TP + I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++
Sbjct: 10 TPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDASTIVLTGKGFGVTNLV 68
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
VL ++D ++ S+VR+Y + +SCTP C S
Sbjct: 69 VLDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYCESS 112
>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 147
Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
V+ + + + ++ + +++ L+ ++VG+ I DV A+ ++
Sbjct: 4 AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADV-AVHDDRL 62
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ +TGK+ G+TN++V + + E+ AN S V V G C P C +
Sbjct: 63 IFVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVNRAGQNQTYDCAPVCRSA 120
>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 137
Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I I + Q+ I++ V++G+ +I D + ++ +T+V+TGK G TNI+ L
Sbjct: 28 IGIVMNQAKIIKLVRPADTVVIGNPEIADAV-VQDAQTIVLTGKGFGVTNIVALDVEGRP 86
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
++D ++ +VR+Y + LSCTP C +
Sbjct: 87 IMDEQVRVSRQTVDSVRIYRRSDVQTLSCTPFCESA 122
>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 140
Score = 96.6 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ +S P I + + Q+ I++ ++VG+ I D +++ T+V+T
Sbjct: 11 AALLAVSSFVAPAMAGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDASTIVLT 69
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
GK G TN++VL + ++D ++ S+VR+Y + +SCTP C S
Sbjct: 70 GKGFGVTNLVVLDTDGSPIVDEQVTVVRQAASSVRIYRRAEIQTMSCTPYCESS 123
>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 167
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 18 GIPTTASQKTPE-DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G P A ++T + + +R+ + + +L D +IVG+ I +L ++T+++T
Sbjct: 24 GDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAIA-AASLTDDRTLILT 82
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
G+ G+TN+IVL + + + + A + V+ + +C RC P
Sbjct: 83 GRTAGATNLIVLDAEGEEIANLVLEVVAAGNHLITVHQGQSRRTFACARRCEP 135
>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 131
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ A+ + ++ + ++ GQ+ + + V+VG+ + DV +L E+T+VI GK
Sbjct: 12 LSLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADV-SLINERTLVILGK 70
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPV 134
G+T ++ L D ++ TV V S +C RC + PV
Sbjct: 71 KAGATTVMAFDARGHALADRQVVVSDIPDGTVVVQRGVVASTYACGDRCSQLAAPV 126
>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 158
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ ++V + I++ V+VG+ I DV +L++ V++TGK+ G+TN+I L +
Sbjct: 36 TVVVSVDNAKIIRLPERTATVVVGNPIIADV-SLQRNGLVILTGKSFGTTNLIALDGSGA 94
Query: 94 ILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+L ++ I+ A S V V SCTP C P+
Sbjct: 95 MLAESFISVQAATTSVVTVQRGLERESYSCTPACQPA 131
>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 173
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ S + + + Q+ + + + + +I+G+ I DV + T+
Sbjct: 24 AILTAMIAGISATSIAPAYADVEVVADQAKVFRLEEPAETIILGNPSIADV-TVHDRLTI 82
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
VITGK+ G+TN++VL ++ +++ I A V + + SC P C
Sbjct: 83 VITGKSYGTTNLVVLNDASEPVVEELITVTAEMAGYVAIQRNNSRFTYSCNPDC 136
>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
Length = 171
Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ A+ + + V ++ +++ VIVG+ IVD ++ +T+V+T
Sbjct: 29 ATVLPVAALADGHSAKKHLEVVVDRARVVRIAKPADTVIVGNPSIVDA-TIQDARTLVLT 87
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
G+ G TNIIVL + D ++D + E + V VY L+C P C +
Sbjct: 88 GRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVYRQANRETLACAPVCQTT 141
>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
Length = 180
Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + A+ + ++ IR+ + + I++ + +++G+ + DV L + +VITG
Sbjct: 42 GLESMATDASAKE--RPIRVELDYARIVRIPPGAQTLVIGNPLVADVTMLRNSQLMVITG 99
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
K+ G+TN+IVL + ++ + E V V SC PRC +
Sbjct: 100 KSFGTTNLIVLDRTGAQVGESIVTVAPAEDKLV-VQRGMHRESYSCNPRCAKA 151
>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
Length = 146
Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + Q+ +++ VIVG+ I D L +T+ +TGK G TN+IVL
Sbjct: 19 AQAREFVVTADQAGLIRLPGDASGVIVGNPGIADA-MLYDSRTLFVTGKVFGRTNLIVLD 77
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTL-SFLSCTPRCL 128
+L +++ + TV+V+ + C P C
Sbjct: 78 EAGRVLYTSDLVVTQPDSQTVQVFRSKSRPETFVCAPTCQ 117
>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
Length = 132
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ + +A GQ++ L + V+VGD ++ DV + E+T+V+ GK G T
Sbjct: 17 VDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIV-NERTLVVLGKRPGVT 75
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
N++V G L D ++ + V VY T S +C C
Sbjct: 76 NLLVFGAGGRALTDRQLIVSEAGGAAVTVYRGVTTSNYACPRECA 120
>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
JCM 2831]
gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + V + +L+ VIVG+ I +V +K +V+TGK+ GSTN+I L + +
Sbjct: 33 VTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTP-QKNGVLVLTGKSFGSTNLIALDNGGAM 91
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ +T I A+ ST+ V LSCTP C PS
Sbjct: 92 IAETTIRVEASRDSTITVQRGLDRESLSCTPGCQPS 127
>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
Length = 172
Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
PTTA + T + +R+ V + L +I+G+ I L +KTV++TGK
Sbjct: 39 PTTALEPTRQ-TEGVVRVIVDFARPLILARPASTLIIGNPTIAQA-TLSDDKTVILTGKT 96
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
GSTN+IV+ + + + A + V + SCT RC P
Sbjct: 97 PGSTNLIVMDAAGAEVANIILDVAAAGGRLITVDGGSGRATYSCTERCDP 146
>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
Length = 152
Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T A ++ + + V + +++ ++VG+ I D L + +T+V+TG+
Sbjct: 10 TLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADAL-VHDGRTLVVTGRLQ 68
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
G TN+I L ++ + +I + V ++ S LSC C
Sbjct: 69 GRTNVIALDRVGRVIYERDIVVSNPVEGQVALFRGPNQSTLSCGAVCDE 117
>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 170
Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+ T ++ P Q+ R+ V + + VI+G+ I +L
Sbjct: 17 LVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPASTVIIGNTGIAQA-SL 75
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++TV++TGK GSTN+IV+ + + + + A V V+ + +C RC
Sbjct: 76 SDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVTVHQGLRRATFTCGRRC 135
Query: 128 LP 129
P
Sbjct: 136 DP 137
>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
NA1000]
Length = 143
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
I +++ + S + ++ GQ+ + + ++VGD I DV + +T+V+ GK
Sbjct: 26 IEPVSAKTSGAAVSVDLPVSAGQASYVSLAGSVRDIVVGDPSIADVSVVND-RTLVVLGK 84
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
G T+++ G N L D ++ N V VY T S +C +C
Sbjct: 85 RPGVTSLLAFGANGRPLADRQVVVSENGGGGVIVYRGATASNYACAAQC 133
>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 170
Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q+ R+ V + + VI+G+ I +L ++TV++TGK GSTN
Sbjct: 34 QQRSTGAEGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SLSDDRTVILTGKTPGSTN 92
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
+IV+ + + + + A+ V V+ + +C RC P
Sbjct: 93 LIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRCDP 137
>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 506
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 6 QREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
+ V+ + +Q T + R+++ + +S+++ ++V + + D +
Sbjct: 16 GLLLVGTNVQGSVVEAKNAQVTASTATQRVKLGLNKSVVIDLPSDAYDILVANPAVADAV 75
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + + GK +G TNI V G N + ++ ++A +
Sbjct: 76 T-RTARRIYLFGKAVGETNIFVFGPNGEQIVSLDLAVERDVAGL 118
>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
Length = 141
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ +++I + S + VIVG+ ++ DV + +T+ I G+ G +++
Sbjct: 19 AGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVV-DSRTIYIMGRGFGRSSV 77
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
V + D ++ + V VY S + C+ C+ +
Sbjct: 78 SVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMICSRTCIEQT 123
>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 170
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
++ ++ Q+ R+ V + + VI+G+ I +L
Sbjct: 17 LVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SL 75
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++TV++TGK GSTN+IV+ + + + + A+ V V+ + +C RC
Sbjct: 76 SDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRC 135
Query: 128 LP 129
P
Sbjct: 136 DP 137
>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 170
Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
++ ++ Q+ R+ V + + VI+G+ I +L
Sbjct: 17 LVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SL 75
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++TV++TGK GSTN+IV+ + + + + A+ V V+ + +C RC
Sbjct: 76 SDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRC 135
Query: 128 LP 129
P
Sbjct: 136 DP 137
>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 505
Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + + ++Q T S R+++ + +S+++ ++V + + D + +
Sbjct: 22 TNVQGVVEAKSTQVTATTASQRVKLGLNKSVVIDLPSDAYDILVANPSVADAVT-RTARR 80
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + GK +G TNI V G N + + ++A +
Sbjct: 81 IYLFGKAVGETNIFVFGPNGEQIASLDLAVERDVAGL 117
>gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
Length = 178
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ P + + + + + + ++VG+ I DV + + +++ GK G+
Sbjct: 12 ATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADV-TVRTKTNIILFGKMPGA 70
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
T I + +++ + + V + SCT C
Sbjct: 71 TTITLFDARGEVIDRLALKVRNASNNVVTLQAGENRYTFSCTTVCEQ 117
>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
Length = 177
Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSGL 133
>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
Length = 138
Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
S + + + +S +Q + VIVG+ +I DV + T+ I GK G T ++ +
Sbjct: 26 QSGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVV-DANTLFIVGKGYGVTEVVAVDG 84
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L EI +VRV+ G + ++C+ C PS
Sbjct: 85 VGRTLFQREIVVTGGSTGSVRVWRGGQATEMACSASCAPS 124
>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 499
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T D R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 51 QTGRDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 109
Query: 86 IVLGHNNDILLDTEIATFANEQST-VRVYT 114
V G +++ +I + V ++
Sbjct: 110 FVFGAGGQEIVNLDIEIERDVSGLEVNLHR 139
>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
Length = 169
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ + ++ + + VG S IL+ + +GD I D T+++T
Sbjct: 12 AAVALASLLPAMSQAADTLDLTVGHSQILRPGKAVGTIAIGDPDIADATTAAG-GTILVT 70
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQS---TVRVYTPGTLSFLSCTP--RCLPSS 131
GK +G+TNII L +L + + ++ +V V G SC P C P+
Sbjct: 71 GKKIGTTNIIALDETGSEVLASTLRVVPIDRRPKYSVDVIKGGQRIEYSCGPELHCAPTK 130
>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
Length = 535
Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ T+ ++ + S R+ + V +S+I+ + V++ + +I D + ++ + ++ G
Sbjct: 29 GMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAPAADVVISNPEIADAV-VQTAQRIIFRG 87
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
G TN ++ + LLD I +
Sbjct: 88 IKFGQTNALIFDRAGNTLLDLNIMVETD 115
>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
Length = 499
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSGL 133
>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
Length = 471
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + R+++ + +S+++ ++V + + D + + + + GK++G TNI
Sbjct: 2 TATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVT-RTARRIYLFGKSVGETNIF 60
Query: 87 VLGHNNDILLDTEIATFANEQST 109
V G N + + ++A +
Sbjct: 61 VFGPNGEQIASLDLAVERDVAGL 83
>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
SS9]
Length = 296
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S + I + +S +++ K++ VG+ I D+L L K + + GK G+T
Sbjct: 27 STNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNK-IYVLGKQFGTT 85
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
N+I+ + ++ ++ +
Sbjct: 86 NVIIWDSRDQLITVLDVEVTHD 107
>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 139
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + + +S + VIVG+ I DV + T+ +TGK G T +
Sbjct: 24 AAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVV-DANTLFVTGKGYGVTEV 82
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
I + + E+ +VRV+ + L+C C S
Sbjct: 83 IAVDGLGRTIYQGEVIVSGGSTGSVRVWRGARATELACAASCSAS 127
>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 499
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T + R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 51 QTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 109
Query: 86 IVLGHNNDILLDTEIATFANEQST 109
V G +++ +I +
Sbjct: 110 FVFGAGGQEIVNLDIEIERDVSGL 133
>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 501
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T + R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 53 QTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 111
Query: 86 IVLGHNNDILLDTEIATFANEQST 109
V G +++ +I +
Sbjct: 112 FVFGAGGQEIVNLDIEIERDVSGL 135
>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
Length = 470
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
+ T + + + S + + + ++++++ DV ++ + + I D
Sbjct: 9 AGLLGLALATTALSPVAAQSLRVMEGSASRALEVPLNRAVVVESDVPFAELSIANPGIAD 68
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ L K++ + GK G T + +LG + ++ + E+ +
Sbjct: 69 ISTLSD-KSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPD 109
>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
Length = 483
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRI-RIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
+ + ++ P+ E ++RI + +G+S+++ V+V + +I D +
Sbjct: 35 FMAPASWSQEAFPSQIHVAAGERATDRILNVGIGRSVVINLAEDAADVLVSNPQIADAV- 93
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
L + + + G G +++ G + L +I + R+
Sbjct: 94 LRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDTSDITRIIR 141
>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
Length = 466
Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ T AS + E + R+ +A G S ++ K+V V D+ + DVL + + + + G
Sbjct: 17 AVATPASARA-EARTGRLEVAAGHSRLVDLPAPLKRVSVADETVADVLVI-NPRQIYVNG 74
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ G+TNI V ++ + +
Sbjct: 75 RKPGNTNITVWDRAERVIAAYAVGVGRDYTRL 106
>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
Length = 498
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ +T D R+++ + +++++ ++V D + D + + +
Sbjct: 38 EARAAESLVRISQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRI 96
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ GK +G TNI V G +++ +I +
Sbjct: 97 YLFGKKVGQTNIFVFGAGGQEVVNLDIEIERDVSGLETNLR 137
>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
Length = 258
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSGL 133
>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 460
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + D + +A G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRASVPDAGAPLTLAAGKGDLLSLPEPAATMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + A+ S RV
Sbjct: 83 TTLIALGANHRPILRRTVIVQADTPSLQRV 112
>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
Length = 476
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 6 QREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
+ P + S+ + + + ++++++ DV ++ + + I D+
Sbjct: 13 GLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGIADIS 72
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
+L +T+ + GK G T + +LG N ++ + EI +
Sbjct: 73 SLSD-RTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMA 113
>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
Length = 489
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I + +S +++ K++ VG+ I D+L L K + + GK G+TN+I+
Sbjct: 32 ATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNK-IYVLGKQFGTTNVIIW 90
Query: 89 GHNNDILLDTEIATFAN 105
+ ++ ++ +
Sbjct: 91 DSKDRLITVLDVEVTHD 107
>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
Length = 476
Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 8 EIKNETVRKKGIPTTASQKTPE------------DNSNRIRIAVGQSLILQFDVLPKQVI 55
+ G+ + + P SN + + + ++++++ DV ++
Sbjct: 3 YDRFLKAALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELS 62
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
+ + I D+ +L +T+ + GK G T + +L + ++ + E+ +
Sbjct: 63 IANPGIADISSLSD-RTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMA 113
>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
Length = 507
Score = 80.5 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + S I++ + +S++L V+V + I D + + + + GK
Sbjct: 36 AAGIVKVGSQQRSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVT-RTSRRIYLFGKQ 94
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
+G TNI V G N + + ++ +
Sbjct: 95 VGQTNIFVFGQNGEQVASIDVEIERDVSGL 124
>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
Length = 473
Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRI-----------AVGQSLILQFDVLPKQVIV 56
G+ + +P +++ IR+ + ++++++ D ++ +
Sbjct: 3 FDGYLKAALCGLALGIATMSPPAHADSIRVVRTGTESVLSVPMNRAVVVESDTPFAELSI 62
Query: 57 GDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ I D+ +L +T+ + GK G+T + +L ++ + ++ A+
Sbjct: 63 ANPSIADISSLSD-RTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAAD 110
>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
Length = 505
Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
V K + + + +++ + ++L++ ++V D K+ D + +
Sbjct: 42 TAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDLPADAHDILVSDPKMADAVT-RTSR 100
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + GK +G TNI V G N ++ ++ +
Sbjct: 101 RIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISGL 138
>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
Length = 158
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
P + + +L + V+VG+ I DV + +T+
Sbjct: 7 AALSVTAFGLMAAVPALAGQPVTVEKNHTLRVTLVAPAGTVVVGNPDIADVTVV-DSRTL 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSP 132
I GK GS+ + V G + L D E+ A ++ + VY S + CT C+ P
Sbjct: 66 YIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPKRGAITVYKGLKPSLMVCTNVCISEEP 124
>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
Length = 507
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
T + + S I++ + +S++L V+V + I D + +
Sbjct: 28 LTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVT-RTSR 86
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + GK +G TNI V G N + + ++ +
Sbjct: 87 RIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERDVSG 123
>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
Length = 467
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + + + + ++++++ DV ++ + + I D L +T+ + GK G T
Sbjct: 31 QVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIADFSTLSD-RTIYVLGKAPGRTT 89
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ +L + ++ + EI +
Sbjct: 90 LTLLDDSGRLITNVEIHVSTD 110
>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
bermudensis HTCC2601]
gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
HTCC2601]
Length = 471
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ + + + + + ++++++ D ++ + + I D+ +L +T+ + GK G+
Sbjct: 29 SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSD-RTIYVLGKTPGT 87
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
T + +L N ++ + ++ A+
Sbjct: 88 TTLTILDANGRLITNVDVRVAAD 110
>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
Length = 515
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + ++ ++ + + +++++ ++V D + D + +
Sbjct: 32 TAQAAASSVVRIVESGPGVKRKVNLGLNKAVVVDLPTDAHDILVADPVLADAVT-RTSRR 90
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + GK +G TNI V G N + ++ E+A +
Sbjct: 91 IYLFGKTVGQTNIFVFGPNGEEIVSLEVAVERDVAGL 127
>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
Length = 482
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S +++ + ++++++ D +V + + I D+ L +T+ + GK G T + +LG
Sbjct: 36 APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSD-RTLYVLGKEPGRTTLTLLG 94
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + E+ +
Sbjct: 95 ADGRLITNVEVQVTPD 110
>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 525
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T +++ + +++++ ++V D ++ D + + + + GK +G TN
Sbjct: 56 AQTGPGVRRDLKLGLNKAIVVDLPEDAHDILVADPELADAVT-RTSRRIYLFGKKVGQTN 114
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVR 111
I + G + ++ ++ + +
Sbjct: 115 IFIFGADGREIVSLDLQIERDIEGLQT 141
>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
Length = 535
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKI 61
H + + N G +T + +R+ G+S ++ V V + +
Sbjct: 29 HATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKGRSAVVDLPTDAADVFVSNPAV 88
Query: 62 VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV-RVYT 114
D + L + + + G G ++ I +L+ I A V+
Sbjct: 89 ADAV-LRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEAATDELTDTVHR 141
>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 524
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ I + + +++++ ++V D + D + + + + GK++G TNI
Sbjct: 59 SGPGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAIT-RTSRRIYLFGKSVGQTNIF 117
Query: 87 VLGHNNDILLDTEIATFANEQST 109
V G + ++ E+A +
Sbjct: 118 VFGPGGEEIVSLEVAVERDVAGL 140
>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
Length = 493
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ A+ ++ + + +G+S+++ K V+V D KI + + + + I G +
Sbjct: 43 SGAATAGANMHAQSLSLGIGKSVVVDLPRDVKDVLVADPKIANAV-VRSAQRAYIIGAAV 101
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTP 115
G TNII + + +IA +
Sbjct: 102 GQTNIIFFDSSGQQISAYDIAVTRDLNGLRTALKQ 136
>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 460
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAPLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
Length = 480
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
+ + + S+ + + + ++++++ DV ++ + + I D+ L +
Sbjct: 35 TSSVPAAVSAETLRVMRGAPSSALNVPMNRAVVVESDVPFAELSIANPGIADISTLSD-R 93
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
T+ + GK G T + +LG + ++ + ++ +
Sbjct: 94 TIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPD 127
>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
[Maritimibacter alkaliphilus HTCC2654]
gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2654]
Length = 474
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 6 QREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
+ TV G+ T + + + + + ++++++ D ++ + + I D+
Sbjct: 13 GLALSWITVPLPGMAQT-LRVMDGGVAETLNVPMNRAVVVESDQPFAEISIANPGIADIS 71
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
L +T+ + GK+ G T + +L + ++ + E+ +
Sbjct: 72 TLSD-RTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPD 110
>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
Length = 473
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + + + ++++++ D ++ + + I D+ +L E+T+ + GK G+T
Sbjct: 31 RVVRTGTESVLNVPMNRAVVVESDQPFAELSIANPAIADISSL-SERTIYVLGKTPGTTT 89
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ +L N ++ + ++ A+
Sbjct: 90 LTILDGNGRLITNVDVRVAAD 110
>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
Length = 478
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A TP ++ RI + +S +L + +V VG+ I D+ L + + I GK LGS
Sbjct: 23 AGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPND-ELYILGKQLGS 81
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVR 111
TNI++ N + +I +
Sbjct: 82 TNIMIWDKNEQLARIMDIEVTHDLNGLKT 110
>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 460
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAPLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ + + GQS + QV++GD K+ DV +++ + + GK GST++
Sbjct: 15 AVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADV-SVDSAGRIQLFGKRAGSTSL 73
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF--------LSCTPRCL 128
VLG N +LLD + A + TV V +C C
Sbjct: 74 TVLGRNGAVLLDHTVVVRAGGEGTVTVTYGAGKDVKPGGLTVIHACGQGCS 124
>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
meliloti 1021]
gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 511
Score = 78.5 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ I + + +++++ ++V D + D + + + + GK++G TNI
Sbjct: 46 SGPGARKTINLGLNKAVVVDLPSDAHDILVADPSLADAIT-RTSRRIYLFGKSVGQTNIF 104
Query: 87 VLGHNNDILLDTEIATFANEQST 109
V G + ++ E+A +
Sbjct: 105 VFGPGGEEIVSLEVAVERDVAGL 127
>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
Length = 461
Score = 78.5 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ + S + + + ++++++ D ++ + + I D+ L E ++ + G
Sbjct: 24 AVSAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVLG 82
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
K G T + +LG + ++ + ++ +
Sbjct: 83 KAPGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
Length = 484
Score = 78.5 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
K G PT AS+ + ++I + +S I+ +V VG+ I D+ L +
Sbjct: 27 AKAGGPTGASR-------DIMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNN-ELY 78
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ GK LGSTNI++ N ++ +I +
Sbjct: 79 VLGKKLGSTNIMIWDENERLVDVIDIEITHDLNGL 113
>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
Length = 544
Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
RI + + +S +L ++V + I D L + + + GK +G TN+IV
Sbjct: 53 AGHTRIELGLDKSKVLVLSADAHDILVANPSIADALT-RDRRHIYLFGKQVGQTNLIVFD 111
Query: 90 HNNDILLDTEIATFANEQST 109
N + +I +
Sbjct: 112 QANRQIASIDIQIERDIAGL 131
>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
Length = 474
Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK G T + +LG
Sbjct: 36 APSSALNVPMNRAVVVESDVPFTELSIANPSIADISSLSD-RTIYVLGKEPGRTTLTLLG 94
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + E+ +
Sbjct: 95 GDGRLITNVEVHVTPD 110
>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium HTCC2083]
gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 474
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ +S+ + I + ++++++ DV ++ + + I D+ L +TV + GK+ G T
Sbjct: 31 RIVRSGSSSTLPIPMNRAVVVESDVPFAELSIANPSIADISTLSD-RTVYVLGKSPGLTT 89
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ +L ++ + ++ A+
Sbjct: 90 LTLLDDAGRLITNVDVRVSAD 110
>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 484
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
K G PT AS+ + + I + +S IL +V VG+ I D+ L +
Sbjct: 27 VKAGGPTGASR-------DIMLIPIFKSRILNLKQTVHRVSVGNPNIGDIKLLPNN-ELY 78
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ GK LGSTNI++ N ++ +I +
Sbjct: 79 VLGKKLGSTNIMIWDENERLVDVIDIEITHDLNGL 113
>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
CB 48]
gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
Length = 476
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P T +T + + +A G+S ++ V V V + + D + L + + + G
Sbjct: 38 PMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAVADAV-LRTPRRIFVLGVA 96
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
G ++ I +L+ +I +
Sbjct: 97 AGQSDAIFFDATGRQILNLQIRVGVSTDQL 126
>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
Length = 468
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + + + + + ++++++ ++ ++ + + I D+ +L +T+ + GK+
Sbjct: 27 AQSLRVVKKGTAATLDVPMNRAVVVESEIPFAELSIANPSIADISSLSD-RTIYVLGKSP 85
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
G T + +L + ++ + ++ A+ V + L
Sbjct: 86 GLTTLTLLDGSGRLITNVDVRVAAD----VTEFKQRLRQIL 122
>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
Length = 486
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ + ++ + + +G+S+++ K V+V D KI + + + + I G +G
Sbjct: 44 AATAGAKMHAQSLSLGIGKSVVVDLPRDVKDVLVADPKIANAV-VRSAQRAYIIGAAVGQ 102
Query: 83 TNIIVLGHNNDILLDTEIATFANEQST 109
TNII + + +IA +
Sbjct: 103 TNIIFFDGSGQQISAYDIAVTRDLNGL 129
>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 466
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + + + ++++++ D ++ + + I D+ L E ++ + GK
Sbjct: 31 AAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVLGKA 89
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + ++ + ++ +
Sbjct: 90 PGRTTLTLLGADGRLISNVDVHVTPD 115
>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 516
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+++ + ++L+L ++V + + D + + + + GK +G TNI V G
Sbjct: 43 AGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVT-RTARRIYLFGKQVGETNIFVFG 101
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A +
Sbjct: 102 AGGEQIARIDVAVERDVAGL 121
>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
Length = 474
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + +++ + ++++++ D+ ++ V + I D+ L +++ + GK+
Sbjct: 27 AQVLRVQEGQADSTLQVPMNRAVVVESDIPFAELSVANPGIADIATLSD-RSIYVLGKSQ 85
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + ++ + ++ +
Sbjct: 86 GRTTMTLLGADGRLITNVDVQVTPD 110
>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
Length = 460
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQGARAPDAGAALSIATGKGELLSLPEPATAMFVADPAIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQST 109
T +I LG N+ +L + + S
Sbjct: 83 TTLIALGANHRPILRKTVIVQVDTASL 109
>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
Length = 483
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 20 PTTASQKTPEDNSNRI-RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
P+ E + RI + VG+S+++ V+V + +I D + L + + + G
Sbjct: 47 PSQVHIAAGERATGRILNVGVGRSVVINLAEDAADVLVSNPEIADAV-LRTPRRIFVIGN 105
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
G + +++ + L ++ + R+
Sbjct: 106 TAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141
>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
Length = 477
Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+A+ + ++ + + +G+S+++ K V+V D KI + + + + I G +G
Sbjct: 21 SAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVADPKIANAV-VRSAQRAYIIGAAVG 79
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
TNII + + +IA +
Sbjct: 80 QTNIIFFDSSGQQISAYDIAVTRDLNGL 107
>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
KD131]
gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides KD131]
Length = 461
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + + + ++++++ D ++ + + I D+ L E ++ + GK
Sbjct: 26 AAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVLGKA 84
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + ++ + ++ +
Sbjct: 85 PGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
[Rhodobacter sphaeroides 2.4.1]
gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacter sphaeroides 2.4.1]
Length = 461
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + + + ++++++ D ++ + + I D+ L E ++ + GK
Sbjct: 26 AAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVLGKA 84
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + ++ + ++ +
Sbjct: 85 PGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
Length = 461
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + + + ++++++ D ++ + + I D+ L E ++ + GK
Sbjct: 26 AAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVLGKA 84
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + ++ + ++ +
Sbjct: 85 PGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
Length = 528
Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ A + P R+ + +G+S+ILQ D +V V + D + L + + +TG
Sbjct: 33 GVAPVAVRAAP-----RLALTIGKSVILQSDADIARVSVAQPDVADFVLL-SPRQIYVTG 86
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ G TN+ + + I ++ +
Sbjct: 87 RAPGITNLTLWDKGDKIRAVYDLDVAPDASRL 118
>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 512
Score = 76.6 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ +T + + + I + ++LI++ ++V D + D + + +T+ + GK +G
Sbjct: 59 SVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAI-VRATRTIFLFGKKVGQ 117
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVR 111
TNI +L N +++ +IA +
Sbjct: 118 TNIFILDANKRPIVNIDIAVERDIAGLET 146
>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
Length = 484
Score = 76.6 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 52 GTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLD 110
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + ++ A+
Sbjct: 111 ASGRLITNVDVRVAAD 126
>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
Length = 490
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPE-------DNSNRIRIAVGQSLILQFDVLPKQV 54
HR R + + +Q TP + + + GQ+ +L ++
Sbjct: 4 HRARALLVTLLVAAGPAVAQEQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIARI 63
Query: 55 IVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
V + + D+ + V++T K +G+T++ + +N L+ + N ++
Sbjct: 64 AVANPDVADLKVVT-PTQVLLTAKGVGTTDLTLWNRDNQPLV-IALQVGRNLEALRTQVK 121
Query: 115 P 115
Sbjct: 122 Q 122
>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
Length = 484
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 52 GTAANLEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLD 110
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + ++ A+
Sbjct: 111 ASGRLITNVDVRVAAD 126
>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
[Magnetospirillum magnetotacticum MS-1]
Length = 142
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ S + + +G +++L + V+VG+ I DV +++ +V + GK G+T
Sbjct: 15 AAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADV-SVDGPGSVTVFGKGPGAT 73
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRV--------YTPGTLSFLSCT-PRCLPS 130
+++ L +L + ++ A ++V + G + + C C P+
Sbjct: 74 SLVALDAGGGVLAERQVVVLAGGANSVTLRYGTGKTWVPGGATAIVDCGVATCAPA 129
>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 527
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 11 NETVRKKGIPTTASQKTPEDNS--NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
T + + + T R+++ + ++L++ ++V D + D +
Sbjct: 40 LRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVT-R 98
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + + GK +G TNI + G ++ ++ +
Sbjct: 99 TSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGL 139
>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
Length = 478
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A T ++ I + +S +L +V VG+ I D+ L + + I GK LGS
Sbjct: 23 AGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPND-ELYILGKQLGS 81
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVR 111
TN+++ N + +I +
Sbjct: 82 TNVMIWDKNEQLARIMDIEVTHDLNGLKT 110
>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
Length = 479
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + S+ +I + +S +L + +V VG+ I D+ L + + I GK LGSTNI
Sbjct: 26 PTAKVRSDIQKIPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPND-ELYILGKQLGSTNI 84
Query: 86 IVLGHNNDILLDTEIATFANEQSTVR 111
++ + + +I +
Sbjct: 85 MIWDKDEQLSKIMDIEVTHDLNGLKT 110
>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 543
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 19 IPTTASQKTP------EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+P A + +++ ++ + + +S +L D + +VG+ +I DVL + ++
Sbjct: 15 LPMQAQAQVASLNVSNANHAGQLDVPLNKSQVLTVDRPFAKALVGNAEIADVLPMTN-RS 73
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
V + GK +G+T++ + N ++ ++A + V + +
Sbjct: 74 VYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPD---VVTLKRQLS 115
>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
Length = 466
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 6 QREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
+ T G T + SN + + + ++++++ + +V V + I D+
Sbjct: 2 GLSLAVSTAPLSGYAET-LKVVKGSPSNSLNVPMNRAIVVETETSFGEVSVANPSIADIS 60
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
L KT+ + GK G T + +L ++ + ++ +
Sbjct: 61 TLSD-KTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPD 99
>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
Length = 129
Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + Q+ +Q VIV + +I DV + +T+ ITGK+
Sbjct: 12 ALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADV-TVTDARTLFITGKS 70
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTL 118
G T II + L ++A E +VRV+ G
Sbjct: 71 YGLTEIIAVDALGRPLFQRQVAVSPGETGSVRVWRGGEA 109
>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
Length = 484
Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ + + G+ +++ D V + D KI DV ++ V + GK G+T++ L
Sbjct: 32 GPSSELAVEAGKGRLIRLDRPAATVFIADPKIADVQ-VKSPTLVYVLGKAPGATSLFALD 90
Query: 90 HNNDILLDTEIATFANEQST 109
++ D + +
Sbjct: 91 AGERMIADLAVNVGIDTARL 110
>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
Length = 540
Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 1 MHRKRQR-EIKNETVRKKGIPTTASQKTPEDN---------SNRIRIAVGQSLILQFDVL 50
M R R R + + A+ + S I + + ++ ++ +
Sbjct: 14 MLRARLRKLVVVMAAASTALAPLATTLPAQAEQTVVNVRQGSQSINLGLNKTKVIVLEAD 73
Query: 51 PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
++V + + D + + + I GK +G TNI+V N + ++ +
Sbjct: 74 AHDILVANPAVADAVT-RDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDINGL 131
>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
Length = 497
Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ S N+ + + + ++++++ DV ++ + + I D+ +L +T+ +
Sbjct: 52 PAVAQGISVLKKGTNA-VLDVPMNRAVVVEADVPFAELSIANPSIADISSLSD-RTIYVL 109
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK+ G T + +L + ++ + ++ A+
Sbjct: 110 GKSPGLTTLTLLDGSGGLITNVDVRVAAD 138
>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
palustris CGA009]
gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
Length = 480
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ N+ I + +G+S+++ K V+V D KI + + + + I G
Sbjct: 42 AAPVPPASSGLNAQSISLGIGKSMVIDLPRDIKDVLVADPKIANAV-VRSAQRAYIIGAA 100
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
+G TNI+ + +IA +
Sbjct: 101 VGQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTALKQT 137
>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
Length = 459
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + + ++++++ D ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 30 GTSVTLDVPMNRAVVVESDDPFAELSIANPNIADISSLSD-RTIYVLGKSPGLTTLTLLD 88
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + + A+
Sbjct: 89 ASGKLITNVNVRVAAD 104
>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
Length = 472
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ A + R++ G+S + + K+V VG+ +I D + L + + G
Sbjct: 19 AVLVGAFPMAVIAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIIL-NPTELYLLG 77
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
K G+TN+IV N + T + N +
Sbjct: 78 KKTGATNLIVWDQNGNS-ASTPLQVSRNVE 106
>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
Length = 469
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + S + + + ++++++ D ++ + + I DV L KT+ + GK
Sbjct: 24 VAAETLRIVSGTGSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSD-KTIYVLGK 82
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFAN 105
G T + +LG + +L + E+ +
Sbjct: 83 VPGRTTMTILGADGTLLSNVEVQVTPD 109
>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 497
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
TA+ + N+ + + VG+S+++ K V+V D KI + + + + I G
Sbjct: 50 AVTAAAADGQINARFLALGVGKSVVIDLPRDIKDVLVADPKIANAV-VRSSQRAYIIGAT 108
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQS 108
+G TNI+ + +IA +
Sbjct: 109 VGQTNIVFFDAQGQQIAAYDIAVKRDLNG 137
>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 460
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRKTVIVQVDTVSLQAV 112
>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
Length = 489
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ T + + + +RI + +S LQ D +V VG+ I D+L L + + I GK
Sbjct: 29 VSTAFAGGPTALDDDSVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRS-RELYIVGK 87
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQST 109
LG+TN++V +++++ + + S
Sbjct: 88 RLGTTNMMVWDKDDNLVHVQNLEVTHDLNSL 118
>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
Length = 527
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ R+++ + ++L++ ++V D + D + K + + GK +G TNI
Sbjct: 58 SGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVT-RTSKRIYLFGKTVGQTNIF 116
Query: 87 VLGHNNDILLDTEIATFANEQST 109
+ G ++ ++ +
Sbjct: 117 IFGDGGREIVSLDLEVERDISGL 139
>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 496
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + N+ + + VG+S+++ K V+V D KI + + + + I G
Sbjct: 47 PAAPVAADGQMNARFLSLGVGKSIVIDLPRDIKDVLVADPKIANAV-VRSSQRAYIIGAA 105
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
+G TNI+ + +IA +
Sbjct: 106 VGQTNIVFFDSAGQQIAAYDIAVKRDLNGV 135
>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 460
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
Length = 483
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G PT AS+ + I + +S +L+ +V VG+ I D+ L + +
Sbjct: 29 AGGPTGASR-------DIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNN-ELYVL 80
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
GK LGSTNI+V N ++ +I +
Sbjct: 81 GKKLGSTNIMVWDKNEQLVDVIDIEITHDLNGLKT 115
>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
Length = 442
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L + +
Sbjct: 16 LDVPMNRAVVVEADVPFAELSIANPGIADISSLSD-RTIYVLGKSPGMTTLTLLDGSGGL 74
Query: 95 LLDTEIATFAN 105
+ + ++ A+
Sbjct: 75 ITNVDVRVAAD 85
>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
Length = 478
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 19 IPTTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+P++A T ++ + + + ++++++ D+ ++ + + I D+ +L +T+
Sbjct: 25 LPSSAGADTLRVVKRGTNSSLDVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTIY 83
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ GK+ G T + +L ++ + ++ A+
Sbjct: 84 VLGKSPGLTTLTLLDAGGQLITNVDVRVAAD 114
>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
Length = 479
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + ++++++ D+ ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 43 RVLEVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTIYVLGKSPGLTTLTLLDAAG 101
Query: 93 DILLDTEIATFAN 105
++ + ++ A+
Sbjct: 102 QLITNVDVRVAAD 114
>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 480
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
++ G P + T ++ +++ VG+S+ L ++V++G+ I DV + V
Sbjct: 33 AQRAGTPRSLLGATAA-SAESMQVPVGKSVDLTLPGAVREVVIGNSDIADV-MVRSPNLV 90
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
ITG+ +G TN+ ++ ++ ++ + Q+
Sbjct: 91 HITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAV 126
>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 486
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
R+ VG+S + + +V VGD ++ D + L + + GK GSTN+ V +
Sbjct: 38 RVPVGESRVYRLPQPVTRVAVGDPEVADYIML-NPSEIYLLGKKTGSTNLTVWDRKGKV- 95
Query: 96 LDTEIATF---ANEQSTVRVYTPGTL 118
+ A Q +RV PG
Sbjct: 96 SSRSLRVSRNVAPIQELLRVVLPGET 121
>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
Length = 434
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
++ + +++++ ++V D + D + + + + GK +G TNI V G +
Sbjct: 1 KLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNIFVFGAGGQEI 59
Query: 96 LDTEIATFANEQST 109
++ +I +
Sbjct: 60 VNLDIEIERDVSGL 73
>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
Length = 446
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + S + + + ++++++ D ++ + + I D+ +L +T+ + GK+ G T
Sbjct: 15 RVVKQGTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLSD-RTIYVLGKSPGLTT 73
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ +L ++ + + A+
Sbjct: 74 LTLLDGAGKLITNVNVRVAAD 94
>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 517
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 20 PTTASQKTPED-NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
T A T E+ ++ + + V +S ++ D + +VG+D I DVL + +++ + GK
Sbjct: 25 ATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTT-RSIYVLGK 83
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+G+T++ + +L ++A + +
Sbjct: 84 KMGTTSLTLYDATGRVLSIMDVAVGPDVEGL 114
>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
Length = 478
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T A + N+ + + +G+S+++ K V+V D KI + + + +
Sbjct: 33 TAAHASDYRAAPAASGGLNAQSVALGIGKSMVIDLPRDIKDVLVADPKIANAV-IRSAQR 91
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
I G +G TNI+ + +IA +
Sbjct: 92 AYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLNGIRTALKQT 135
>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
Length = 486
Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + ++++++ D+ ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 50 RALEVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTIYVLGKSPGLTTLTLLDAAG 108
Query: 93 DILLDTEIATFAN 105
++ + ++ ++
Sbjct: 109 QLITNVDVRVASD 121
>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
Length = 476
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 8/76 (10%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + V ++++++ + + + + I D+ L +T+ + G+ G T + +
Sbjct: 44 GTAESLDVPVNRAIVVESEQPFADISIANAGIADISTLSD-RTIYVLGRAPGITTLTMFD 102
Query: 90 HNNDILLDTEIATFAN 105
+++ + + +
Sbjct: 103 GAGNLITNVRVRVSPD 118
>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
Length = 574
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPED-------NSNRIRIAVGQSLILQFDVLPKQVIV 56
+ N+T + + ++ + + G+S +L+ ++ V
Sbjct: 52 SGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALLRLPAPVTRISV 111
Query: 57 GDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
G+ + DV L + + GK++G+TN+I+
Sbjct: 112 GNPDVADV-TLISPGEIYVLGKSIGTTNVILWTRGG 146
>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
Length = 487
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 23 ASQKTPEDNSNRI-RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A T S +I ++ +S + K+V +GD +++D++ L+ + V + GK LG
Sbjct: 15 AWSATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSD-EVFLIGKKLG 73
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
STN++ ++ I + S
Sbjct: 74 STNLMAWDRRGQLIESINIEVTHDLNSL 101
>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
Length = 461
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
R+ +G+S I +F K+V VGD ++ D + + + + GK LGSTN++V ++
Sbjct: 8 RVPLGESRIYRFAQPIKRVAVGDPQVADYIMM-NRSEIYLLGKKLGSTNLVVWDQKGNV- 65
Query: 96 LDTEIATFANEQST 109
T + +
Sbjct: 66 TSTPVQVSRGTTAL 79
>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
Length = 565
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
D ++ + +S +++ + K++ VG+ I D+L L + + + GK LG+TN++V
Sbjct: 56 QSDIEGDFQVPLYKSGVIELEERAKRISVGNPGIADILMLHS-RQLYVVGKALGTTNVVV 114
Query: 88 LGHNNDILLDTEIATFANEQST 109
N + I + +
Sbjct: 115 WDKNERVFASFNIEVVHDLDTL 136
>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
Length = 503
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ + VG+S I++ K+V + D+L L + + +TGK G+TN+ +
Sbjct: 42 SRPQKLTLTVGKSTIVECPQNLKRVSIAAPDYADILTL-SPRQIYLTGKMAGNTNLTLWR 100
Query: 90 HNNDILLDTEIATFANEQST 109
+N ++ ++ +
Sbjct: 101 SDNSVMSVIDVEVLPDVVGL 120
>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 463
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
A + + S + ++ ++++++ ++ ++ + + I D+ +L +++ + GK
Sbjct: 31 AEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSD-RSIYVLGKVP 89
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G T + +L ++ + E+ +
Sbjct: 90 GITTLTLLDAAGQLITNVEVRVAPD 114
>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 503
Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ +++ ++ + + +S +L D + +VG+ +I DVL + ++V + GK +G+T++
Sbjct: 37 SNANHAGQLDVPLNKSQVLTADRPFAKALVGNAEIADVLPMTN-RSVYVLGKKMGTTSLT 95
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ N ++ ++A + V + +
Sbjct: 96 LYDSRNIMIAVVDVAVGPD---VVTLKRQLS 123
>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
Length = 472
Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + S+ + +A+ ++++++ D ++ + + I D L E+T+ + GK
Sbjct: 27 AESIRVVRNGTSSALSVAMNRAVVVESDSPFAELSIANPAIADFSTL-SERTIYVLGKTP 85
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G T + + ++ + ++ +
Sbjct: 86 GRTTLSLFDGLGKLITNIDVHVSTD 110
>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 471
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
+++ V K T + S +I I +G+ +IL + V+V D DV+
Sbjct: 22 LLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVILHLPSRVQDVLVSDPTKADVV- 80
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ KTV I GK++G N+I++GH+ LL+ +I + ++ +
Sbjct: 81 VHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDIRNLEMTFR 128
>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
Length = 440
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
A + + S + ++ ++++++ ++ ++ + + I D+ +L +++ + GK
Sbjct: 8 AEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSD-RSIYVLGKVP 66
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G T + +L ++ + E+ +
Sbjct: 67 GITTLTLLDAAGQLITNVEVRVAPD 91
>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
Length = 494
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
S + + +G++ I++ +IV D IV+ + + + V + G+ G N
Sbjct: 50 ASREVLLPLGKAAIIELPRPATDIIVSDPDIVEAV-IRTPQRVFLMGREAGQANAFFFDR 108
Query: 91 NNDILLDTEIATFANEQ 107
N+ +L+ EI +
Sbjct: 109 ANNQILNLEIRVEQDAD 125
>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
DSS-3]
Length = 475
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 8/83 (9%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + + + + ++++++ + ++ + + I D+ +L +T+ + GK+
Sbjct: 34 AQDLRVVKQGAAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSD-RTIYVLGKSP 92
Query: 81 GSTNIIVLGHNNDILLDTEIATF 103
G T + + ++ + +
Sbjct: 93 GLTTLSLFDAGGRLITNVNVRVS 115
>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
Length = 474
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ +R+ +A+ ++++++ DV ++ + + +I D+ +L ++ + GK G T + +L
Sbjct: 36 NSESRLNVAINRAVVVESDVSFAELSIANPQIADISSLSDT-SIYVLGKTPGITTLTLLD 94
Query: 90 HNNDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 95 AEGRLISNVDVVVSAD 110
>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 472
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
P + + S R+ ++ G+SLI+ K+V V + + + + + + + +
Sbjct: 34 PARPRSDDRAERSGQSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAV-VRSSRKLFLI 92
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
G G+T+I V+ + ++ + + V L
Sbjct: 93 GIENGATSIFVMDAEGRQIAALDVTIARD----INVLRQSLQQSL 133
>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
Length = 436
Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ +++++ ++V D + D + + + + GK +G TNI V G +++
Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTNIFVFGAGGQEIINL 59
Query: 99 EIATFANEQST 109
+I +
Sbjct: 60 DIEIERDVSGL 70
>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
phaeovibrioides DSM 265]
Length = 472
Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 1 MHRKRQREIKN--ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGD 58
MH +++ + ++ + + + VG+S + + + K+V VG+
Sbjct: 1 MHMNMSYLMRSGCRMSAFAALLSSIAPVAGLAAPSTYFVPVGESRVYRLEQPIKRVAVGN 60
Query: 59 DKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
++ D + L + + GK G+TN+I+ T + N
Sbjct: 61 PEVADYIML-NSSELYLLGKKTGATNLILWNQQGK-FTSTLLQVSRNS 106
>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
Length = 485
Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
AS + + G+SL+L + + + + I D L L K + + GK G
Sbjct: 33 VASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANPDIADTLVL-SPKQLYVIGKAAG 91
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
+TN+ + + ++A +
Sbjct: 92 TTNLTLWDAEGSVYALYDLAVSPDLTRL 119
>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
Length = 490
Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ +R+ + +SL++ K V+V D KI + + + + I G +G TNII
Sbjct: 53 NARSLRLGISKSLVVDLPRDVKDVLVADPKIANAV-VRSSRRAYIIGAAVGQTNIIFFDA 111
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSF 120
+ + ++A +
Sbjct: 112 DGQQMAAYDVAVTRDLNGIRTAIHQALPQS 141
>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 433
Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 2 ARAAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 60
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 61 FALGANNRTILRETVVVDVDTPSLQRI 87
>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
Length = 482
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 12 ETVRKKGIPTTASQKTPED-----------NSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
+ G+P A+ + + +S + + VG+S+I+ V+V +
Sbjct: 26 LVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLVSNPG 85
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ D + + + + G G N+++ L + + VR
Sbjct: 86 VADAV-VRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVR 135
>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
Length = 544
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+R+ + +SL++ + V+V + + D + + + + + GK +G TN
Sbjct: 93 TARNARVPKLVRLGLDKSLVVDLPSVANDVLVANPGVADAV-MRTSQRLYLFGKQVGQTN 151
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+ V + + + EI +
Sbjct: 152 VFVFDNGGNQIAALEILIERDISGL 176
>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
Length = 504
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ RI + VG+S+I+ +V+VG+ K+ D + + + + I G + G T I + +
Sbjct: 45 ARRISMGVGKSIIVDLPRDATEVVVGNPKVADAI-VRSARKLYIMGMDAGQTTIFAVDSS 103
Query: 92 NDILLDTEIATFANEQST 109
+ + EI+ +
Sbjct: 104 GRQVANLEISIGRDVGEL 121
>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 452
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 8/76 (10%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + + ++++++ + ++ + + I D+ +L +T+ + GK G T + +
Sbjct: 20 GTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSD-RTIYVLGKAPGLTTLTLFD 78
Query: 90 HNNDILLDTEIATFAN 105
+++ + + +
Sbjct: 79 GAGNLIANVRVRVAPD 94
>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
Length = 480
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ + + +G+S+++ K V+V D KI + + + + I G +G TNI+
Sbjct: 53 NARPLALGIGKSVVIDLPRDIKDVLVADPKIANAV-VRSAQRAYIIGAAVGQTNIVFFDS 111
Query: 91 NNDILLDTEIATFANEQSTVRVYTPG 116
+ +IA +
Sbjct: 112 TGQQIAAYDIAVTRDLNGIRTALRQS 137
>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
Length = 528
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ T A + P R+ + +G+S+ILQ D +V V +I D + L + + +TG+
Sbjct: 33 MGTVAVRTAP-----RLSLTIGKSVILQSDADVSRVSVAQPEIADFVLL-SPRQIYVTGR 86
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G TN+ + + + ++ +
Sbjct: 87 APGITNLTLWDKGDKVRAVYDLDVAPDISRL 117
>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 500
Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ N+ + + VG+S+++ K V+V D KI + + + + I G +G TNI+
Sbjct: 59 GQINARFLALGVGKSVVIDLPRDIKDVLVADPKIANAV-VRSSQRAYIIGAAVGQTNIVF 117
Query: 88 LGHNNDILLDTEIATFANEQS 108
+ +IA +
Sbjct: 118 FDAQGQQIAAYDIAVKRDLNG 138
>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
Length = 485
Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ S R+ + VG+S+I+ +++VG+ K+ + + + + + I G G T I
Sbjct: 39 SDAIMSRRVAMGVGKSIIVDLPADAAEIVVGNPKVANAV-VRSTRKLYIMGVETGQTTIF 97
Query: 87 VLGHNNDILLDTEIATFANEQST 109
L + + + EI+ +
Sbjct: 98 ALDRSGRQIANLEISIGRDVGEL 120
>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
Length = 491
Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S + + + ++ ++ V V+V + +V+ + + + I G +G TN N
Sbjct: 48 SETLDLPLSKAAVVHLPVDVADVLVTNPAVVEAI-VRTPRRAYIMGMGIGQTNAFFFDAN 106
Query: 92 NDILLDTEIATFAN 105
++LD ++ +
Sbjct: 107 GQLILDLDLRVERD 120
>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
Length = 482
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
+ + P T E + +I + VG+S+I++ + +G + D++AL
Sbjct: 25 SSSALHAAGPVKVV--TGEHAARKIHLQVGKSVIVRSGAPVVRTTLGSPDVADIVAL-SP 81
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ ITGK G TN+ + ++ + +I +
Sbjct: 82 TQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRL 120
>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 423
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ P + + ++ + + V D I D A +T+ + GK G T+
Sbjct: 3 RAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQA-PSNRTIFVFGKKFGRTS 61
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ L N + L + +
Sbjct: 62 LFALDENGEALAELHVVVTQP 82
>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
Length = 546
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + + R+ + G+S+I+ K+V V + + + + + + V + G
Sbjct: 52 PVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAV-VRSTRKVFVIGMA 110
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G+T+I ++ + ++ +
Sbjct: 111 DGATSIFIMDAEGRQIAALDVTVARD 136
>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
Length = 501
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 12 ETVRKKGIPTTASQKTPEDN--SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ I P++ + RI + G+SL++ K+V V + K+ + + +
Sbjct: 44 RAEKAPAIAAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAV-VRS 102
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ V I G G+T+I V+ + ++ +
Sbjct: 103 TRKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRD 138
>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 474
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+I I + + +ILQ V + V+V D DV+ + +T+ + GKN+G N+I++GH+
Sbjct: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107
Query: 94 ILLDTEIATFAN 105
+L+ +I +
Sbjct: 108 QMLNLDILIERD 119
>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 494
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 15 RKKGIPTTASQKTPEDN--SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
R +P P++ S RI + G+SL++ K+V V + K+ + + + +
Sbjct: 34 RVPAMPAPVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVANAV-VRSTRK 92
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
V I G G+T+I V+ + ++ +
Sbjct: 93 VFIIGVENGATSIFVMDAEGRQIAALDVTVGRD 125
>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
Length = 466
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G + +++ +R+ + ++++++ ++L ++ V + I D+ L E+++ +
Sbjct: 23 SGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATL-SERSIYVL 81
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G+ G T + +LG + ++ + EI +
Sbjct: 82 GRAPGRTTMTLLGADGSLIANVEIQVVPDVAEL 114
>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
Length = 470
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 18 GIPTTASQKTPEDN-SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G P T E + +R+ +G+S+++ V+V + +I D + + + V +
Sbjct: 31 GFPKTVHVAAGERATARLLRVGLGRSVVVNVAEDVADVLVSNPEIADAV-VRSKNRVFVL 89
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G G N+++ G N L + +
Sbjct: 90 GNKAGQANLVLFGRNGRELASFNLRVEPDTSDL 122
>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 496
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + +I + +S ++ D +VG I DVL + + V I
Sbjct: 23 GPARSQVRVVQDDPVPARQISVTRDKSRTIKLDKPFASALVGAPDIADVLPMSD-RIVYI 81
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
GK +G+TN+ + + +++ + + Q+ GT S
Sbjct: 82 QGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIRSGTNS 125
>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
Length = 495
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ G P + + + +++ VG+S+ L K+V++G+ I DV+ + V I
Sbjct: 51 RPGTPQSLRGLSSA-AAESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVI-VRTPHMVHI 108
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
TG+ +G TN+ ++ + ++ ++A + Q+
Sbjct: 109 TGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAV 142
>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
Length = 460
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +A G +L+ V + D + DV + ++V + GK G+T + LG NN
Sbjct: 38 LTVAAGGGEMLKLPEPAGAVFIADPDVADVH-VPTPQSVFVLGKKAGTTTLFALGSNNRT 96
Query: 95 LLDTEIATFANEQSTVRV 112
+L I A+ + R+
Sbjct: 97 ILRETIVVNADTPTLQRI 114
>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 491
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+S I + + ++ I++ + + V+V + IVD + + K + G +G TN
Sbjct: 55 SSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAV-VRTNKRTYLIGLAVGQTNAFFFNE 113
Query: 91 NNDILLDTEIATFANEQST 109
+L+ EI +
Sbjct: 114 AGQQILNLEIRVARDLTGL 132
>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 195
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 19 IPTTASQKT-PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I T A +T + + +A+G+ +L F V+V + I D+ + + + G
Sbjct: 4 IATGACAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFG 62
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
K G T++I L +A + + R
Sbjct: 63 KAAGQTSLIALDSEGRETAALSLAVSSGTAAVTR 96
>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
Length = 487
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
I + S + + +++ +S + K+V +GD +++D++ L+ + V + GK
Sbjct: 12 ISFSLSAVSATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSD-EVFLIGK 70
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQST 109
LGSTN++ ++ I + S
Sbjct: 71 KLGSTNLMAWDSRGRLIESINIEVTHDLNSL 101
>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
Length = 486
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ +R+ + +SL++ K V+V D KI + + + + I G ++G TNII
Sbjct: 47 NARALRLGISKSLVVDLPRDVKDVLVADPKIANAV-VRSSRRAYIIGASVGQTNIIFFDA 105
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSF 120
+ + ++A +
Sbjct: 106 DGQQMAAYDVAVTRDLNGIRTAIHQALPQS 135
>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
Length = 473
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + + ++ +++ K + + I D L K +++ GK GST++ VL
Sbjct: 24 QAQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTK-IMVFGKKTGSTSLYVLDA 82
Query: 91 NNDILLDTEIATFANEQST 109
+++ + N
Sbjct: 83 KENVIYSATVKVSHNVTEL 101
>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 448
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 9 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 67
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 68 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 102
>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 441
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G + + + + G +++ V V D + DV + + V + G
Sbjct: 2 GAAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLG 60
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG N+ +L + + S R+
Sbjct: 61 KKAGTTTLFALGANDRTILRETVVVNVDTPSLQRI 95
>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 437
Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 19 IPTTASQKT-PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I T A +T + + +A+G+ +L F V+V + I D+ + + + G
Sbjct: 19 IATGACAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFG 77
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
K G T++I L +A + + R
Sbjct: 78 KAAGQTSLIALDSEGRETAALSLAVSSGTAAVTR 111
>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
Length = 479
Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T +Q N+ + + +G+S+++ K V+V D KI + + + + I G +
Sbjct: 42 ATTTQTGGGMNARPLALGIGKSVVIDLPRDIKDVLVADPKIANAV-VRSSQRAYIIGAAV 100
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQS 108
G TNI+ + +IA +
Sbjct: 101 GQTNIVFFDSTGQQIAAYDIAVTRDLNG 128
>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
Length = 484
Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ P + + I Q + + V D I D A T+ + GK G T+
Sbjct: 57 RAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQA-PSSSTIFVFGKKSGRTS 115
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+ L N + L + I +
Sbjct: 116 LFALNENGEALAELRIVVTQPLEDL 140
>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
Length = 484
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ P S + + Q + + V D I D A T+ + GK G T+
Sbjct: 57 RAAPGGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQA-PSNTTIFVFGKKSGRTS 115
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+ L N + L + + +
Sbjct: 116 LFALNENGEALAELRVVVTQPIEDL 140
>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 482
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 43 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 101
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 102 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 136
>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 461
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + VG+S + + + K+V VG+ ++ D + L + + GK G+TN+I
Sbjct: 15 SGLAAPSTYLVPVGESRVYRLEQPIKRVAVGNPEVADYIML-NSSELYLLGKKTGATNLI 73
Query: 87 VLGHNND 93
+ +
Sbjct: 74 LWDQKGN 80
>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 510
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ +G+S + +F K+V +GD K+ D + L V + GK +GSTN+ V N + L
Sbjct: 59 VPLGESRVYRFAQPIKRVAMGDPKVADYIML-NRFEVYLLGKKMGSTNLAVWDQNGN-LT 116
Query: 97 DTEIATFANEQST 109
+ + +
Sbjct: 117 SSPVQVSRGTTAL 129
>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
Length = 463
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ N + + I T+A Q+ + S + + V + +L +V++ + I +
Sbjct: 31 MNNTSESQSVIGTSAYQQV--EVSGNVNLVVNRGKLLTLPQNAAKVLIANPDIASFQ-MP 87
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEI 100
V + K GST++ L N ++L +
Sbjct: 88 SPDNVFVFAKKSGSTSLYALDDENQVILALTL 119
>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 444
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 5 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 63
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 64 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 98
>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 492
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 61 ARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 119
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG N+ +L + + S R+
Sbjct: 120 FALGANDRTILRETVVVNVDTPSLQRI 146
>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
Length = 411
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ P + + ++ + + V D I D A +T+ + GK G T+
Sbjct: 15 RAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPPIADYQA-PSNRTIFVFGKKFGRTS 73
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+ L N + L + +
Sbjct: 74 LFALDENGEALAELHVVVTQPIGDL 98
>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 476
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+S +++ +S + K+V +GD +++D++ L+ V + GK LGSTN++
Sbjct: 9 AATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSN-EVFLIGKKLGSTNLM 67
Query: 87 VLGHNNDILLDTEIATFANEQST 109
++ I + S
Sbjct: 68 AWDSRGRLIESINIEVTHDLNSL 90
>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
Length = 486
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 1 MHRKRQREIK-NETVRKKGIPTTAS-QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGD 58
MH+ I V +PT+A T N I ++VG S ++ V++ D
Sbjct: 1 MHKLAGPAIAIGLAVACAAVPTSALNAATSSMQDNAILLSVGGSRVINLPAKMSDVVIAD 60
Query: 59 DKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
++VDV + + + + K G T + N +L + N S
Sbjct: 61 PEVVDVH-VRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITS 109
>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
Length = 492
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
A+ + N+ + + V +S+++ K V+V D KI + + + + I G +
Sbjct: 41 PMAAAADGQLNARFLALGVSKSVVIDLPRDIKDVLVADPKIANAV-VRSAQRAYIIGAAI 99
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQS 108
G TNI+ + +IA +
Sbjct: 100 GQTNIVFFDAAGLQIAAYDIAVTRDLNG 127
>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
Length = 527
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ ++ + +G+S+ILQ D +V V +I D + L + V +TG+ G TN+ +
Sbjct: 39 RSTPKLSLTIGKSVILQSDADVSRVSVAQPEIADFVLL-SPRQVYVTGRAPGVTNLTLWD 97
Query: 90 HNNDILLDTEIATFANEQST 109
+ I ++ +
Sbjct: 98 KGDKIRAVYDLDVAPDITRL 117
>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
Length = 430
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ P + + I Q + + V D I D A T+ + GK G T+
Sbjct: 3 RAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQA-PSSSTIFVFGKKSGRTS 61
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+ L N + L + I +
Sbjct: 62 LFALNENGEALAELRIVVTQPLEDL 86
>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 485
Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
++ + +++ +S + K+V +GD ++D++ L+ + + + GK L
Sbjct: 14 SSGVTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSD-ELFLIGKKL 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQST 109
GSTN++ ++ I + S
Sbjct: 73 GSTNLMAWDSRGQLIESINIEVTHDLNSL 101
>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
Length = 529
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
+ T + + S +++ +GQ+ ++ V++ +D++
Sbjct: 22 AEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQAAVIHLPEDAADVVIANDEVAS 81
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + + + G+ +G TNI + ++LD + +
Sbjct: 82 AV-VRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVERD 122
>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 437
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 29 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAAGQTSLIA 87
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L + +A + + R
Sbjct: 88 LDSDGRETAALSLAVSSGTAAVTR 111
>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
11218]
Length = 489
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + + +S ++ +V +GD +++D++ L+ + + GK LG
Sbjct: 15 SQWVYAANQSGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLK-ADELFLIGKRLG 73
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
STN++ +L I + S
Sbjct: 74 STNLMAWDRRGQLLESINIEVTHDVNSL 101
>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
Length = 429
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ ++++++ DV ++ V + I D L +T+ + GK G T + +L ++ +
Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSD-RTIYLLGKAPGRTTLTLLDEAGRLITNV 59
Query: 99 EIATFAN 105
EI A+
Sbjct: 60 EIHVSAD 66
>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
Length = 428
Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ ++++++ D ++ + + I D L +T+ + GK G T + + ++ +
Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSD-RTIYVLGKTPGRTTLSLFDGAGQLITNI 59
Query: 99 EIATFAN 105
++ +
Sbjct: 60 DVHVSTD 66
>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 243
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 21 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAAGQTSLIA 79
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L +A ++ + R
Sbjct: 80 LDSEGRETAALSLAVSSSTAAVTR 103
>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
Length = 434
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 3 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 61
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 62 FALGANNRTILRETVVVDVDTPSLQRI 88
>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 429
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 21 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAAGQTSLIA 79
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L +A + + R
Sbjct: 80 LDSEGRETAALSLAVSSGTAAVTR 103
>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 480
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + +S + K+V +GD ++D++ L+ + V + GK LGSTN++
Sbjct: 13 AATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSD-EVFLIGKKLGSTNLM 71
Query: 87 VLGHNNDILLDTEIATFANEQST 109
++ I + S
Sbjct: 72 AWDSRGQLIESINIEVTHDLNSL 94
>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
10229]
gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 482
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 51 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 109
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 110 FALGANNRTILRETVVVDVDTPSLQRI 136
>gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis
RB2256]
Length = 493
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 4 KRQREIKNETVRKKGIPTT-ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R I P+ + + ++ S+ I ++VG+ ++ V V DDK+
Sbjct: 13 ARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFVADDKVA 72
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
DV + + + + K G T+I + ++ T N
Sbjct: 73 DVQ-VRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNN 114
>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 432
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + I +A+G+ +L F V+V + I D+ + + + GK G T+
Sbjct: 21 QTIAKGAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKTAGQTS 79
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVR 111
+I L +A + + R
Sbjct: 80 LIALDSEGRETAALSLAVSSGTAAVTR 106
>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 442
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + ++ G + + D V + D I D + + VVI GK +G TN+ +
Sbjct: 21 ASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVI-DKNKVVIFGKKIGHTNLFIF 79
Query: 89 GHNNDILLDTEIAT 102
+ + L + ++
Sbjct: 80 DNEGNELANRKVIV 93
>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Photobacterium damselae subsp. damselae]
gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae]
Length = 438
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + ++ G + + D V + D I D + + VVI GK +G TN+ +
Sbjct: 17 ASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVI-DKNKVVIFGKKIGHTNLFIF 75
Query: 89 GHNNDILLDTEIAT 102
+ + L + ++
Sbjct: 76 DNEGNELANRKVIV 89
>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
Length = 439
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 8 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 66
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 67 FALGANNRTILRETVVVDVDTPSLQRI 93
>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
Length = 438
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 7 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 65
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 66 FALGANNRTILRETVVVDVDTPSLQRI 92
>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 488
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSAFTAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ + + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESLNVEVTHDLNSL 101
>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 482
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+ +A +++A G+S++L+ ++V V ++ VL L V
Sbjct: 19 VLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSVAAPEVAQVLVL-SPTQVY 77
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+TG G T + + + +I +
Sbjct: 78 VTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARL 112
>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
Length = 496
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 18 GIPTTASQ------KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
P ASQ K+ S R+++ + +++++ ++V D + D + +
Sbjct: 38 ATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADAVT-RTSR 96
Query: 72 TVVITGKNLGSTNIIVLGHNN 92
+ + GK +G TNI V G N
Sbjct: 97 RLYLFGKTVGQTNIFVFGPNG 117
>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
Length = 488
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSAFTAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ + + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESLNVEVTHDLNSL 101
>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
bathyomarinum JL354]
Length = 502
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+PT A ++ + I +++G+ ++ V + +D I D+ ++ ++
Sbjct: 9 AAPLSIVPTMADAQSVVRPTQDIVLSIGKGELINVPGSMADVFIANDSIADIQ-VKSQRQ 67
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + GK+ G T + D++ + +N S
Sbjct: 68 LYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSL 104
>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
Length = 486
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + P + + +A QS L K+V +GD +++D++ L + + GK L
Sbjct: 15 SLSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSN-ELFLVGKKL 73
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G+TN+ V ++ + +
Sbjct: 74 GTTNVSVWDSRGRLIEQFNVEVTHD 98
>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
Length = 426
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G +++ V V D + DV + + V + GK G+T + LG NN
Sbjct: 4 LAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTLFALGANNRT 62
Query: 95 LLDTEIATFANEQSTVRV 112
+L + + S R+
Sbjct: 63 ILRETVVVDVDTPSLQRI 80
>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
Length = 432
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++ G++ ++ V + D +I D + VV+ GK +GST+IIV N D
Sbjct: 15 VNLSEGEAKTIKSIKEIASVFIADPEIADYQVI-DANKVVVFGKKIGSTSIIVFDENGDT 73
Query: 95 LLDTEIATFANEQSTVRVYTPGT 117
+ + ++ +S V +
Sbjct: 74 ITNNKLVI---NKSLVHIQQQIQ 93
>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 488
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSAFTARGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ + + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESLNVEVTHDLNSL 101
>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
Length = 445
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + G+S + + V K+V VGD I D + + + ++GK G+TN+IV G
Sbjct: 7 APSSYSVPEGESRVYRLAVPAKRVAVGDPAIADFIMI-SPSELYLSGKKTGATNLIVWGK 65
Query: 91 NND 93
N +
Sbjct: 66 NGN 68
>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 442
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + + ++ ++Q K + + + I D AL K +++ GK G+T++ VL + +
Sbjct: 2 TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTK-IMVFGKRAGTTSLYVLDADEN 60
Query: 94 ILLDTEIATFANEQSTVRVYTPGTLSFL 121
++ + N V S
Sbjct: 61 VIYSASVKVSHN----VTELNGLIRSEF 84
>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
Length = 486
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + N++ + + + +S+++ K V+V D KI + + + I G ++G
Sbjct: 43 AVANEGQMNAHFLALGISKSVVIDLPRDIKDVLVADPKIATAV-IRSAQRAYIIGASVGQ 101
Query: 83 TNIIVLGHNNDILLDTEIATFANEQS 108
TNI+ + +IA +
Sbjct: 102 TNIVFFDAAGQQIAAYDIAVTRDLNG 127
>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 429
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 21 AKGAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVV-SPGVIYVFGKAAGQTSLIA 79
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L +A ++ + R
Sbjct: 80 LDSEGRETAALSLAVSSSTAAVTR 103
>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 488
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ I + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESINIEVTHDLNSL 101
>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 488
Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ I + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESINIEVTHDLNSL 101
>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
Length = 517
Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G+ T + + I + G S + + VIV + ++ + L + + +
Sbjct: 26 AGLAQTRAAVSMGAAPQLINLPRGTSFAVDLPADARDVIVANPQVAEA-MLHSPRRITVI 84
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G G T+ + L +L + A +
Sbjct: 85 GIAPGETDAVFLDAAGRTILSLRVRVDAGTSAL 117
>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 488
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ + + + + +S + K+V +GD +++D++ L+ + + + G
Sbjct: 11 GVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSD-ELFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ LGSTN++ +++ I + S
Sbjct: 70 RKLGSTNLMAWDSRGNLIESINIEVTHDLNSL 101
>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
Length = 431
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ IA G +L V V D + DV + +TV + GK G+
Sbjct: 1 MHGALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVH-VPTPETVFVLGKKAGT 59
Query: 83 TNIIVLGHNNDILLDTEIATFANEQS 108
T + LG +N +L + A+ S
Sbjct: 60 TTLFALGAHNRTILRETVVVSADTPS 85
>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
Length = 427
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + G +++ V V D + DV + + V + GK G+T + LG
Sbjct: 1 PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTLFALGA 59
Query: 91 NNDILLDTEIATFANEQSTVRV 112
N+ +L + + S R+
Sbjct: 60 NDRTILRETVVVNVDTPSLQRI 81
>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 429
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + G+ G T++I
Sbjct: 21 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGQAAGQTSLIA 79
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L + +A + + R
Sbjct: 80 LDSDGRETAALSLAVSSGTAAVTR 103
>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 499
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 20 PTTASQKTPED-NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
PT+A P N I ++VG S ++ V++GD +VDV + + + + K
Sbjct: 31 PTSALNAAPASMQDNAILLSVGGSKVINLPAKMSDVVIGDPDVVDVH-VRSQNQLYLIAK 89
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFAN 105
G T + N +L + N
Sbjct: 90 KAGETTVFATATNGKVLFSGTVRVGNN 116
>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
Length = 502
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P S R+ ++ G+SLI+ K+V V + + + + + + + + G
Sbjct: 38 ASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAV-VRSSRKLFLIG 96
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ G+T+I V+ + ++ + + V L
Sbjct: 97 IDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 215
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + G+ G T++I
Sbjct: 21 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGQAAGQTSLIA 79
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L + +A + + R
Sbjct: 80 LDSDGRETAALSLAVSSGTAAVTR 103
>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
Length = 432
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 5 RQREIKNETVRKKGIPTTAS-QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
R+ I + P A Q++ ++++ + G+S +++ D ++V D +I +
Sbjct: 5 RRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAE 64
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
+ ++ + GK G T +++ I E+
Sbjct: 65 AMP-TSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVK 103
>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 437
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 29 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAAGQTSLIA 87
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
LG +A + + R
Sbjct: 88 LGSEGRETAALSLAVSSGTAAVTR 111
>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
Length = 217
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q+ + +RI G I V+VG+ +I DV + + + +T K G T
Sbjct: 41 AQEPVNIPKDILRINAGSVEIFAVPEPMSDVLVGESRIADVAIISD-RRIAVTAKAPGRT 99
Query: 84 NIIVLGHNNDILLDTEIATFANEQ---STVRVYTPGTLSFL 121
NII++G N +L ++ F E + +R + ++
Sbjct: 100 NIILMGENRKLLSKLDVLVFKAEDENGNPIRKQSGKQINTY 140
>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens DM4]
Length = 502
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P S R+ ++ G+SLI+ K+V V + + + + + + + + G
Sbjct: 38 ASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAV-VRSSRKLFLIG 96
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ G+T+I V+ + ++ + + V L
Sbjct: 97 IDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
Length = 502
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P S R+ ++ G+SLI+ K+V V + + + + + + + + G
Sbjct: 38 ASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAV-VRSSRKLFLIG 96
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ G+T+I V+ + ++ + + V L
Sbjct: 97 IDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
Length = 560
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + + + +A G+S I++ + ++V + +I D + L ++ + I G G+T+
Sbjct: 80 TADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAV-LRDKRRIYIVGLAEGTTDAA 138
Query: 87 VLGHNNDILLDTEIATFANEQST 109
+L I
Sbjct: 139 FFDTAGRRILSLSIRVSQPVDQL 161
>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
Length = 487
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ + +S + ++V VG+ I D+L + K + I G+ LGSTNI+V + ++
Sbjct: 50 VPIHKSKTMSLANAAERVSVGNPAIADILLI-NPKELYILGRQLGSTNIMVWDDQDRLVD 108
Query: 97 DTEIATFANEQST 109
+I +
Sbjct: 109 IVDIEITHDLNGL 121
>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
RCH1]
Length = 484
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ +++A G+S ++ ++ + D+ I V+ L + V +TGK G+T + +
Sbjct: 38 AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVL-SPQQVYVTGKKAGTTTLTLWD 96
Query: 90 HNNDILLDTEIATFAN 105
++ ++ +
Sbjct: 97 GGGAVIGVYDVQVTPD 112
>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
Length = 454
Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ I + G + L+F+ + V + D I D + +V+ G+ LG+T +IV
Sbjct: 25 QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVI-DSNKLVVFGRKLGTTTLIV 83
Query: 88 LGHNNDILLDTEIAT 102
++ L +I
Sbjct: 84 FDEDSQTLSHRKIVV 98
>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
Length = 545
Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + +A G+S I++ V + ++V + + D + L + + + G G T+ +
Sbjct: 64 ASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADAV-LRGPRRIYVLGMGQGVTDAVFF 122
Query: 89 GHNNDILLDTEIATFANEQST 109
+L I + +
Sbjct: 123 DAAGRKILSLAIRVDQDSSAL 143
>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 484
Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + + +S + +V +GD +++D++ L+ + + GK LG
Sbjct: 15 STASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSN-ELFLIGKKLG 73
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
+TN++ ++ I + S
Sbjct: 74 ATNLMAWDSRGQLIESINIEVTHDLNSL 101
>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
Length = 487
Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + T + + +A QS L K+V +GD +++D++ L + + GK
Sbjct: 14 VSLSVHAATAQSG-RVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSN-ELFLIGK 71
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFAN 105
LG+TN+ V ++ + +
Sbjct: 72 KLGTTNVSVWDSRGRLIEQFNVEVTHD 98
>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 479
Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+A R+R+ V +S ++ +++G KI +V+ L +T+ I GK +G
Sbjct: 4 SAPAAGETITVTRVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSD-QTLYILGKEVG 62
Query: 82 STNIIVLGHNNDILLDTEIATFANEQS 108
+TN+ ++ N ++ ++ + +
Sbjct: 63 TTNVSLVDANKKVIGVVDVEVGLDAGN 89
>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 485
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + + +S + +V +GD ++D++ L+ V + GK LG
Sbjct: 15 STASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSN-EVFLIGKKLG 73
Query: 82 STNIIVLGHNNDILLDTEIATFANEQST 109
+TN++ ++ I + S
Sbjct: 74 ATNLMAWDSRGQLIESINIEVTHDLNSL 101
>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
Length = 432
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
A + + ++ + + V D I D A T+ + GK
Sbjct: 4 QGAPRAASNSIDGTLNLSSSLGKTVHLPAPATTIFVADPTIADYQA-ASNTTIFVFGKKS 62
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G T++ L + L I
Sbjct: 63 GRTSLFALDDKGEALAALRIVVTQP 87
>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 489
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+S+++ F K V+V D KI + + + + I G +G TN++
Sbjct: 57 LSLGIGKSVVVDFPQDVKDVLVADPKIANAV-VRSARRAYIIGAAVGQTNVVFFDGEGQQ 115
Query: 95 LLDTEIATFANEQST 109
+ +IA +
Sbjct: 116 VAAYDIAIKRDLNGV 130
>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
Length = 574
Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDN------SNRIRIAVGQSLILQFDVLPKQVIVG 57
KR+ K +P A S + +++G+ ++ V +
Sbjct: 28 KRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVVLSIGRGELISVPGAMADVFIA 87
Query: 58 DDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+D + DV ++ ++ + + GK+ G T I D++ + N S
Sbjct: 88 NDAVADVQ-IKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSL 138
>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 484
Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + +S + +V +GD ++D++ L+ + + GK LG+TN++
Sbjct: 20 AALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSS-ELFLIGKKLGATNLM 78
Query: 87 VLGHNNDILLDTEIATFANEQST 109
++ I + S
Sbjct: 79 AWDSRGQLIESINIEVTHDLNSL 101
>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 438
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A+G+ +L F V+V + I D+ + + + GK G T++I
Sbjct: 30 AKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKTAGQTSLIA 88
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
L +A + + R
Sbjct: 89 LDSEGRETATLSLAVSSGTAAVSR 112
>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
Length = 459
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + + Q+ +L K + + D++ D L K ++I GK +GST++ VL
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTK-IMIFGKRVGSTSLYVL 75
Query: 89 GHNNDILLDTEIATFANEQST 109
+++ + N Q
Sbjct: 76 DARENVIYSATVKVNHNVQEL 96
>gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC
21756]
gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC
21756]
Length = 564
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + + + +A G+S I++ + ++V + D + L + V I G G T+
Sbjct: 64 TADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAV-LRDRRRVYIVGLAEGVTDAA 122
Query: 87 VLGHNNDILLDTEIATFANEQST 109
+L I
Sbjct: 123 FFDDAGRRILSLSIKVSQPVDQL 145
>gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3]
gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3]
Length = 98
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + + Q+ +L K + + D++ D L K ++I GK +GST++ VL
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTK-IMIFGKRVGSTSLYVL 75
Query: 89 GHNNDILLDTEIATFANEQST 109
+++ + N Q
Sbjct: 76 DARENVIYSATVKVNHNVQEL 96
>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
Length = 487
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + + +A QS L K+V +GD +++D+L L + + GK L
Sbjct: 15 SLSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSN-ELFLIGKKL 73
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G+TN+ V ++ + +
Sbjct: 74 GTTNVSVWDRRGRLIEQFNVEVTHD 98
>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
Length = 520
Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK--------- 60
R P+T + +++ + + VG+S L+ V ++++G+ +
Sbjct: 35 TTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISRILLGNPEGSQAAQPKE 94
Query: 61 --------------------IVDV-LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
+ DV + L + + GK++GSTNII+LG N L +
Sbjct: 95 STDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGSTNIILLGRNGQCTL-VD 153
Query: 100 IATFANEQST 109
+A A+ S
Sbjct: 154 VAVGADTASL 163
>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 151
Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T ++ + + GQ I++ + V+VGD I DV + E T+V+T K G T+++
Sbjct: 14 TSASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADV-TVANESTIVVTAKENGVTDLV 72
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS-CTP-RCLP 129
+L + L ++ + E TVRVY + + CT C+P
Sbjct: 73 LLDESGREFLRKQLQIGSPEL-TVRVYRTARETTEAVCTASSCMP 116
>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
Length = 492
Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+S+++ F K V+V D KI + + + K I G +G TN++
Sbjct: 59 LSLGIGKSVVVDFPQDVKDVLVADPKIANAV-VRSAKRAYIIGAAIGQTNVVFFDGEGQQ 117
Query: 95 LLDTEIATFANEQST 109
+ +IA +
Sbjct: 118 VAAYDIAIKRDLNGV 132
>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
Length = 502
Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 9 IKNETVRKKGIPTTASQKTPEDN----SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+ + G+P + T N S ++ ++ G+SLI+ K+V V + + +
Sbjct: 25 LSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVANA 84
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + + G + G+T+I V+ + ++ + + V L
Sbjct: 85 V-VRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
Length = 505
Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S+++ K V+V D KI + + + + I G +G TN++
Sbjct: 64 APAKTRFLSLGVGKSVVIDLPREVKDVLVADPKIANAV-IRSAQRAYIIGGQVGQTNVVF 122
Query: 88 LGHNNDILLDTEIATFANEQS 108
+ + +IA +
Sbjct: 123 FTADGQQVAAYDIAVKRDLNG 143
>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
Length = 499
Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P S R+ ++ G+SLI+ K+V V + + + + + + + + G
Sbjct: 38 ASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANAV-VRSSRKLFLIG 96
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+T+I V+ + ++ +
Sbjct: 97 IDNGATSIFVMDGEGRQIAALDVTIARD 124
>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 479
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ T+ T A+ + ++ +R+ V Q +L + LP V+V D I L
Sbjct: 31 VTLTTMMLPAT-TLAAGVSVAPVTDEVRLTVNQGRLLHLNALPDSVLVADPNIASFE-LP 88
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA 101
+ + K++G+T + + N +++ +
Sbjct: 89 SPGNLFVYAKSVGTTTLYAMDENGNVINAIRLV 121
>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
Length = 487
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + + +A QS L K+V +GD +++D+L L + + GK L
Sbjct: 15 SLSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSN-ELFLIGKKL 73
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G+TN+ V ++ + +
Sbjct: 74 GTTNVSVWDRRGRLIEQFNVEVTHD 98
>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
Length = 535
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
++ S + ++ ++ +L+F+ ++V + +I DVLA ++ + + K G
Sbjct: 46 VTEPGQSATSRTLNLSQNKTAVLEFEEDVDDILVANPEIADVLA-RSKRRIAVLAKGKGE 104
Query: 83 TNIIVLGHNNDILLDTEIATFANEQS 108
++II +L ++ S
Sbjct: 105 SSIIFTNAQGKEILSLDVIVAGQGVS 130
>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
Length = 456
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 13 TVRKKGIPTTASQKTPEDNSN------RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
T + T + T E S ++ + G+S++L + + V+V + KI D +
Sbjct: 8 TAPQLATAQTNFEATVEVTSQHSVKVRQLNVGEGRSIVLNTNEEVRDVLVSNPKIADAV- 66
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ V + G G ++++ G+ L + + + +
Sbjct: 67 VRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQ 114
>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 514
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 13 TVRKKGIPTTASQK--TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
T + K + T A + + +I ++ G+S +++ ++ VGD +IVDV+ L
Sbjct: 58 TAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPATRLSVGDARIVDVILL-NP 116
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
+ + GK++GSTN+I+ ND + +IA +
Sbjct: 117 SELYMLGKSVGSTNLILWNKANDATI-IDIAVGMDT 151
>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
Length = 440
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G++ + V + + +I D + + +V+ GK +GS +++ N++
Sbjct: 25 VNLGEGEAKAITTKQEIASVFISNPEIADYQVV-DKNKLVVFGKKVGSVSLLAFDDNSNT 83
Query: 95 LLDTEIATFANEQSTVRVYTPGT 117
++ ++ +S + +
Sbjct: 84 IVSRKLVV---NKSLIHIQQQIQ 103
>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
Length = 132
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + +A QS L K+V +GD +++D++ L + + GK LG
Sbjct: 1 MSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSN-ELFLIGKKLG 59
Query: 82 STNIIVLGHNNDILLDTEIATFAN 105
+TN+ V ++ + +
Sbjct: 60 TTNVSVWDSRGRLIEQFNVEVTHD 83
>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
Length = 550
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ ++ R+R+ V +S + D +I G IVDV +L + + GK G+TN+I
Sbjct: 50 SEMNDVQRVRVVVNKSRTFKVDTAFATIIAGSPDIVDVKSLSD-HMIYVQGKQTGTTNVI 108
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ + ++ + + + GT
Sbjct: 109 LFDSAMKQIGVLDVEVVIDTGNLQQNIRTGT 139
>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 440
Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I ++ G S ++ + V V D KI D +E +K V++ GK +G ++++V N
Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIE-KKKVIVYGKKIGQSSVMVFDRNGHT 85
Query: 95 LLDTEIATFANEQS 108
L + ++ + S
Sbjct: 86 LANKKVIVNKSLDS 99
>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
Length = 522
Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
T + T + + G S + + VI+ + + + L
Sbjct: 24 GSAASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEA-MLHSP 82
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN----EQSTVRVYTPGT 117
+ + + G G T+ + L + +L + A + + RV
Sbjct: 83 RRITMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSN 133
>gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium
SWAT-3]
gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium
SWAT-3]
Length = 464
Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
++ + + + ++ +++ K + + I D L K V++ GK GS I VL
Sbjct: 21 ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTK-VMVFGKRAGSATITVL 79
Query: 89 GHNNDILLDTEIATFANEQ 107
++ +I N +
Sbjct: 80 NEQERVIYTNKIRVTHNSR 98
>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
Length = 475
Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
T A+ + ++ + + V Q +L D LP V+V D I L + + KN
Sbjct: 38 ATQAAGVSVAPVTDEVHLTVHQGRLLHLDALPDSVLVADPNIASFE-LPSPGNLFVYAKN 96
Query: 80 LGSTNIIVLGHNNDILLDTEIA 101
+G+T + + N ++ +
Sbjct: 97 VGTTTLYAMDENGKVINAIRLV 118
>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
BL2]
gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
BL2]
Length = 530
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
++ + R+ + +S + + +VG I DVL + + + I GK +
Sbjct: 54 AGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMSD-RVIYIQGKRV 112
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
G+TN+ + + ++ ++ + Q+ GT
Sbjct: 113 GTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGT 149
>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 442
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ S T S + +A G + V V + + D + + VVI
Sbjct: 10 ALSPLLSVATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVI-DKHKVVIYS 68
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTP 115
K+ G +++IV + + +L I + S R
Sbjct: 69 KSTGKSSLIVFDQSGNTILSRRIQVNKSADSIQRYLRN 106
>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 478
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ T+ T A+ + ++ + + V Q +LQ P V+V D I L
Sbjct: 31 VTLTTMMLPAT-TLAAGVSTAPITDEVHLTVNQGRLLQLADTPDSVLVADPNIASFE-LP 88
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA 101
+ + K++G T + + N +++ +
Sbjct: 89 SPGNLFVYAKSVGVTTLYAMDENGNVINAIRLV 121
>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 520
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ + + I + G S + + VIV + + + +
Sbjct: 22 VTLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEAN-VH 80
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + + G G T+ + L +L + A +
Sbjct: 81 SPRRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTAL 121
>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 440
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I ++ G S ++ + V V D KI D +E +K V++ GK +G ++++V N
Sbjct: 27 INMSEGDSQVILANKDVGSVFVSDPKIADYQVIE-KKKVIVYGKKIGQSSVMVFDRNGHT 85
Query: 95 LLDTEIATFANEQS 108
L + ++ + S
Sbjct: 86 LANKKLIVNKSLDS 99
>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
Length = 478
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ T+ T A+ + +N + + V Q +LQ D LP V+V D I L
Sbjct: 31 VTLTTMMLPAT-TMAAGVSEVAETNVVHLTVHQGRLLQLDALPDSVLVADPNIASFE-LP 88
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA 101
+ + K++G+T + + N +++ +
Sbjct: 89 SPGNLFVYAKSVGTTTLYAMDENGNVINAIRLV 121
>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
Length = 603
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ +V L +T+ + G +GSTN+IV
Sbjct: 91 PMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQA-MLVSPQTLYVLGLEVGSTNMIV 149
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 150 QGRSGSCSV-VDVAVGADPGGL 170
>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 479
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ T+ T A+ + ++ + + V Q +LQ + LP V+V D I L
Sbjct: 31 VTLTTMMLPAT-TLAAGVSVAPVTDEVHLTVHQGRLLQLNELPDSVLVADPNIASFE-LP 88
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA 101
+ + K++G+T + + N +++ +
Sbjct: 89 SPGNLFVYAKSVGTTTLYAMDENGNVINAIRLV 121
>gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01]
gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01]
Length = 465
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
++ + + ++ +++ K + + + I + L K V+I GK GS I VL
Sbjct: 21 ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTK-VMIFGKQAGSATITVL 79
Query: 89 GHNNDILLDTEIATFANEQ 107
++ +I N +
Sbjct: 80 NEQERVIYTNKIRVTHNSR 98
>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
Length = 431
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G++ + V + D +I D + + +VI GK +G+ +++ N++
Sbjct: 12 MNLGEGEAKAINTKAEIASVFISDPQIADYQVV-DKNKLVIFGKKVGTVSLLAFDDNSET 70
Query: 95 LLDTEIATFANEQSTVRVYTPGT 117
++ ++ QS + +
Sbjct: 71 IISRKLVV---NQSLIHIQQQVQ 90
>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 603
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ +V + + +T+ + G +GSTN+IV
Sbjct: 91 PMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAMLV-SPQTLYVLGLEVGSTNMIV 149
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 150 QGRSGSCSV-VDVAVGADPGGL 170
>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
Length = 635
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ IV + + +T+ + G+++G+TN+IV
Sbjct: 91 PMRDHSEVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAMLV-SPQTLYLLGQDVGTTNMIV 149
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 150 QGRSGSCSV-IDVSVGADPGGL 170
>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 499
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
N I ++VG S ++ V++GD +VDV + + + + K G T
Sbjct: 37 AAPASMQDNAILLSVGGSKVINLPAKMSDVVIGDPDVVDVH-VRSQNQLYLIAKKAGETT 95
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ N +L + N
Sbjct: 96 VFATAINGKVLFSGTVRVGNN 116
>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 443
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+KN + T + + S I +AVG + ++V VGD I DVL ++
Sbjct: 1 MKNTLIAFAIAICTMTFASLASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMK 60
Query: 69 KEK--TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
+ +V++ K G+TN+++ D + V
Sbjct: 61 GSRSSSVLLIAKAPGATNVMLWERGRDEPTVWSVEVVDAAAHAV 104
>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 550
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
I+I +G+S++++F + V+ + +VD + L + V + GK G +N + +
Sbjct: 71 SIKIGLGKSVLIEFPNGVRDVMASNPAVVDAVVLSSNR-VFLLGKAPGQSNAFFFSNKGE 129
Query: 94 ILLDTEIATFANEQST 109
L E+
Sbjct: 130 QLALIELNVDQEGDGL 145
>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
Length = 445
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
I ++ G + + + V + D KI D + ++ +VI GK++GS+++++
Sbjct: 24 SHAVGIINMSEGGAKTISVEQDISSVFLSDPKIADYQVI-DKRKIVIYGKSIGSSSVLIF 82
Query: 89 GHNNDILLDTEIAT 102
G + L + +I
Sbjct: 83 GEKGNTLSNKKIMV 96
>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ +S + +V +GD +++D++ L+ V + GK LG+TN++ ++
Sbjct: 1 MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSN-EVFLIGKKLGATNLMAWDARGQLIE 59
Query: 97 DTEIATFANEQST 109
I + S
Sbjct: 60 SINIEVTHDLNSL 72
>gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
Length = 200
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+KN + T + + S I +AVG + ++V VGD + DVL ++
Sbjct: 1 MKNTLLAFAIAVWTMTFASLAGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMK 60
Query: 69 KEK--TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
+ +V++ K G+TN+++ D + V
Sbjct: 61 GSRSGSVLLVAKAPGATNVMLWERGRDEPTVWNVEVVDAAAQAV 104
>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
Length = 452
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G + G
Sbjct: 20 GTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGPDHPHAFG 78
Query: 90 HNNDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 79 CVGRLITNVDVRVAAD 94
>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
Length = 438
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ I + +SL + +++V +I V A +++ + G GSTN+
Sbjct: 31 RSEPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTA-TSDRSFYVQGLEFGSTNM 89
Query: 86 IVLGHNNDILLDTEIATFANEQST 109
+V G +L +I + +
Sbjct: 90 LVYGPGGRLLEVLDIRVGYDAEGL 113
>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 626
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++Q + VG+ IV L +T+ + G+ +G+TN+IV
Sbjct: 93 AMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQA-MLVSPQTLYLLGQEVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 152 QGRSGSCSV-IDVSVGADPGGL 172
>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 484
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 18 RESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 76
Query: 90 HNNDILLDTEIATFANEQSTVRVYTP 115
+ + ++A A+
Sbjct: 77 KSGACQI-IDVAVGADADGLQTSLRQ 101
>gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 460
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + + + ++ ++ K + + + I D + K +++ G G+ I
Sbjct: 19 SVASWAEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTK-IMVFGMQAGTATIT 77
Query: 87 VLGHNNDILLDTEIATFANE 106
+L ++ + +I +
Sbjct: 78 ILNAQERVIYNNKIRVVHDT 97
>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
solanacearum GMI1000]
Length = 634
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ IV L +T+ + G+++G+TN+IV
Sbjct: 91 PMRDHSEVTVPVGKSTMVQLTEPVRSRTVGNPNIVQA-MLVSPQTLYLLGQDVGTTNMIV 149
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 150 QGRSGSCSV-IDVSVGADPGGL 170
>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
Length = 386
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R ++ V +S+++ ++V + + I D+L + + + + G LG+T++IV +
Sbjct: 31 RTQVIVNKSVLVNLKNPAERVSIANPAIADLLLIT-PRQIQLNGLALGATSLIVWEKGGE 89
Query: 94 ILLDTEIATFANEQ 107
L ++ N
Sbjct: 90 KPLFFDVNVVGNTN 103
>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
Length = 644
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++Q + VG+ +V L +T+ + G+ +G+TN+IV
Sbjct: 120 AMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQA-MLVSPQTLYLLGQEVGTTNMIV 178
Query: 88 LGHNNDILLDTEIATFANEQSTV 110
G + + ++A A+ +
Sbjct: 179 QGRSGSCSV-IDVAVGADPGGLL 200
>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
Length = 411
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + I + G ++L+F+ V +G ++I +V A+ EK + ++G G+TN+
Sbjct: 14 CSSSNAAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAV-NEKAIYVSGLTAGTTNL 72
Query: 86 IVLGHNNDILLDTEIATFANEQST 109
+V+ ++NDI+ I T
Sbjct: 73 LVMNYDNDIIRSHAIVVHPVNNET 96
>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
Length = 526
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
VR T S +++G ++ + V DDKI DV + +
Sbjct: 28 VRPSRGAAAVRTATIGKPSETTTLSIGSGQMIALSAPISDLFVADDKIADVQ-VRSTTQL 86
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ GK G T + +++ + + +N S +
Sbjct: 87 YLFGKGAGETAVYATDKAGNVVWSSIVRVGSNITSVDTMLK 127
>gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 457
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++ ++ K + + + I D + K +++ G G+ I +L
Sbjct: 24 AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTK-IMVFGMQAGTATITILNAQ 82
Query: 92 NDILLDTEIATFANE 106
++ + +I +
Sbjct: 83 ERVIYNNKIRVVHDT 97
>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 626
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++Q + VG+ IV + + +T+ + G+ +G+TN+IV
Sbjct: 93 AMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLV-SPQTLYLLGQEVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 152 QGRSGSCSV-IDVSVGADPGGL 172
>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
Length = 576
Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ S+ I I++G+ ++Q V V ++ + DV ++ ++ + + G++ G T I
Sbjct: 59 QQVVSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQ-IKSQRQLYVFGRSGGETTI 117
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
+++ + +N S
Sbjct: 118 YASDARGEVIFSANVRVGSNIGS 140
>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
Length = 401
Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++Q + VG+ IV + + +T+ + G+ +G+TN+IV
Sbjct: 93 AMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLV-SPQTLYLLGQEVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 152 QGRSGSCSV-IDVSVGADPGGL 172
>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 441
Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+++ + + G + + V VGD +I D + E VV+ G G+T++IV
Sbjct: 21 NSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKII-DETKVVVYGVGQGATSVIVYD 79
Query: 90 HNNDILLDTEIAT 102
+ L + E+
Sbjct: 80 RAGNELYNAEVVV 92
>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
Length = 458
Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ + + + G S ++ D + V ++ D + + + ++
Sbjct: 3 AALTAFMLVCAAPIFAKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIV-DDYSFMVY 61
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTP 115
GK G+T++ N +IL + A + V
Sbjct: 62 GKQEGTTDVTAFDANGNILYTDTLNVNALINNIVDTNKQ 100
>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 458
Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + + Q+ ++ K + + + + D + K +++ G GS I +L
Sbjct: 21 ASLAAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTK-IMVFGLQAGSATITIL 79
Query: 89 GHNNDILLDTEIATFANE 106
++ + +I +
Sbjct: 80 NAQERVIYNNKIRVTHDT 97
>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
ICC168]
Length = 482
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + GQS F + + D ++ D + K +++ KN G+T++IV
Sbjct: 30 PAAAGALYMKHGQSRNFHFTGDLDTIFISDPRVADYKVV-NNKNIIVYAKNTGTTDLIVY 88
Query: 89 GHNNDILLDTEIAT----FANEQSTVRVYTPGTLSF 120
G NN +LL I+ Q R++ ++
Sbjct: 89 GRNNTVLLKHSISVDPFLSDINQRVARLFPGNSIEV 124
>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 441
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
P S + + G + + V V + +I D ++ K VV+ G GST++
Sbjct: 17 ALPSYASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNK-VVVYGVGQGSTSV 75
Query: 86 IVLGHNNDILLDTEIAT 102
IV + + + E+
Sbjct: 76 IVYDRGGNEIYNAELVV 92
>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
Length = 474
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ T + ++ IR+ + Q +LQ D +P V++ D I L V +
Sbjct: 26 LSATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFE-LPSPGNVFV 84
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
K +G+T + + + ++ + + +
Sbjct: 85 FAKGVGNTTLYAMDVDGQVVSAIHLVVEHDLDAL 118
>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 565
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T + + I++G+ ++ V V ++ I DV ++ + I GK
Sbjct: 62 TPPMTPGVTAPARSLAISIGRGELVTLPGNMTDVFVANENIADVQ-VKSGNQLYIFGKAG 120
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQS 108
G T + D++ I N S
Sbjct: 121 GETTVYASNGRGDVIWSANIRVGNNLDS 148
>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 548
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 93 REATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGLSVGTTNMIVQG 151
Query: 90 HNNDILLDTEIATFANEQSTVRVYTP 115
+ + ++A A+
Sbjct: 152 RSGACQI-IDVAVGADAGGLQTSLRQ 176
>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
Length = 522
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ S I +++G+ ++ V + ++ + DV ++ + + + GK+ G T +
Sbjct: 30 QSVTSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQ-VKSRRQLYLFGKSGGETTV 88
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
DI+ + +N S
Sbjct: 89 YASNAAGDIIWAANVRVGSNIGS 111
>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
Length = 462
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ +I + VGQS ++ + V + D I DV ++ ++ G +G T++
Sbjct: 17 APLAHAAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKT-PSARSALVFGAKVGKTDL 75
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
+++G + + + + S
Sbjct: 76 VIVGKEGEAIAHYRLNVKNSGLS 98
>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
Length = 441
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+A P S + + G + + V V + +I D + E VV+ G G
Sbjct: 13 SAILSCPLLASELMNLDQGAAKTINLKRQISTVFVANQEIADYKII-DENKVVVYGVGQG 71
Query: 82 STNIIVLGHNNDILLDTEIAT 102
+T++IV + + + E+
Sbjct: 72 TTSVIVYDRGGNEIYNAELVV 92
>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 461
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL ++ + +V++T K G+T
Sbjct: 36 ASIASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGAT 95
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N+++ +D I V
Sbjct: 96 NVMLWERGHDEPTVWSIEVVDAAAHAV 122
>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 446
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 10 KNETVRKKGIPTTASQ--KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
N T++KK I P S + + G + + V V + ++ D +
Sbjct: 4 NNMTLKKKNIALLLCGILSCPLLASELMNLDQGAAKTINLKRQISTVFVANQEVADYKII 63
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
E VV+ G G+T++IV + + + E+
Sbjct: 64 -DENKVVVYGVGQGATSVIVYDRGGNEIYNAELVV 97
>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
Length = 622
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++Q + VG+ IV + + +T+ + G+ +G+TN+IV
Sbjct: 93 AMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLV-SPQTLYLLGQEVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 152 QGRSGSCSV-IDVSVGADPGGL 172
>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 519
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+ + +S ++ + + +V + I DV+ L ++ I GK +G+T + +L + +
Sbjct: 74 VRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNA-SINILGKKIGNTRLSLLDQDKRV 132
Query: 95 LLDTEIATFANEQSTVRVYT 114
+ +I + RV
Sbjct: 133 IGIVDIEVSHDVDMLRRVMR 152
>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 460
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 22 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 80
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 81 KSGACRI-IDVAVGADAGGL 99
>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 545
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S+ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 92 AVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 150
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
G + + ++A A+
Sbjct: 151 QGRSGACRV-IDVAVGADAGGLQT 173
>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
Length = 682
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 93 AVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGMSVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGKSGACRV-IDVAVGADAAGL 172
>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis Bt4]
Length = 468
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV
Sbjct: 16 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIV 74
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 75 QGKSGACRI-IDVAVGADAGGL 95
>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis TXDOH]
Length = 462
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV
Sbjct: 16 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIV 74
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 75 QGKSGACRI-IDVAVGADAGGL 95
>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 443
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL ++ + +V++T K G+T
Sbjct: 18 ASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTT 77
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N++V +D + V
Sbjct: 78 NVMVWERGHDEPTVWNVEVVDAAAQAV 104
>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 503
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ ED IR+ VG+S +L+ ++ V D ++ D++ + E+ V I G G TN
Sbjct: 48 RVKDEDLEQVIRLRVGRSKVLRTSFTISRISVADPEVADIIMI-SEREVYINGNAPGVTN 106
Query: 85 IIVLGHNNDILLDTEIATFAN 105
I + G ++ A+
Sbjct: 107 ISLWGK--RSFSSAKVTVEAD 125
>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
Length = 550
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 95 REATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGLSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQSTVRVYTP 115
+ + ++A A+
Sbjct: 154 RSGACQI-IDVAVGADAGGLQTSLRQ 178
>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
PA7]
gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
PA7]
Length = 408
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ ++ +A GQ L+ V K++ +GD +I DV L ++++TGK GST++++
Sbjct: 29 AQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLL-DRSSLLVTGKEQGSTSLLIWT 87
Query: 90 HNNDILLDTEIATFANEQ 107
+ L +++A
Sbjct: 88 ACSAEPLRSQVAVEGRGS 105
>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 529
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ P ++ + VG+SLI+ + +++ V + ++++ +A+ K V+I GK G
Sbjct: 51 SQDVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAV-NPKEVLINGKAAGE 109
Query: 83 TNIIVLGHNND-ILLDTEIATFANEQSTVR 111
T +I+ + +L D + VR
Sbjct: 110 TTLIIWQQGGNRLLYDLTVRISPVRLDVVR 139
>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 9]
Length = 510
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 75 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 133
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 134 KSGACRI-IDVAVGADAGGL 152
>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 441
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P S + + G + + V V + +I D + E VV+ G G+T++IV
Sbjct: 19 PLLASELMNLDQGAAKTINLKRQISTVFVANQEIADYKII-DENKVVVYGVGQGTTSVIV 77
Query: 88 LGHNNDILLDTEIAT 102
+ + + E+
Sbjct: 78 YDRGGNEIYNAELVV 92
>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei BCC215]
Length = 438
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 2 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 60
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 61 KSGACRI-IDVAVGADAGGL 79
>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei B7210]
Length = 449
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 17 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 75
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 76 KSGACRI-IDVAVGADAGGL 94
>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 7894]
Length = 473
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 39 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 97
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 98 KSGACRI-IDVAVGADAGGL 116
>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei DM98]
Length = 448
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 17 KGIPTTASQKTPE-DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+P E S + + +G+SL++ D + +G+ + + +T+ +
Sbjct: 3 AAVPLRGPNCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYL 61
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G ++G+TN+IV G + + ++A A+
Sbjct: 62 VGMSVGTTNMIVQGKSGACRI-IDVAVGADAGGL 94
>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
Length = 441
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P S + + G + + V V + +I D + E VV+ G GST++IV
Sbjct: 19 PSYASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKII-DENKVVVYGVGQGSTSVIV 77
Query: 88 LGHNNDILLDTEIAT 102
+ + + E+
Sbjct: 78 YDRGGNEIYNAELVV 92
>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
Length = 511
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + I G++ ++ + V DD I DV + + I GK G T I
Sbjct: 43 ADAGSGAGVLEINTGRARLITLPRPMTDLFVADDTIADVQ-VRSPTQLYIFGKKPGETTI 101
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYT 114
++ T + N S R+
Sbjct: 102 SATARGGAVVYATTVRIGNNLDSIGRMLR 130
>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 14]
Length = 439
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 9 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 67
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 68 KSGACRI-IDVAVGADAGGL 86
>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 112]
Length = 452
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 17 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 75
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 76 KSGACRI-IDVAVGADAGGL 94
>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
Length = 464
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S ++++ V Q +L +V++ + ++ + V + K G T + L N
Sbjct: 48 SGQVKLHVNQGTLLNLPKAASKVLIANPEVASFQ-MPSPDNVFVFAKAPGDTTLYALDEN 106
Query: 92 NDILLDTEIATFANEQSTVR 111
ND+++ + + + + R
Sbjct: 107 NDVIIAVTLTSGYDLEGLTR 126
>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
Length = 826
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV
Sbjct: 95 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIV 153
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 154 QGKSGACRI-IDVAVGADAGGL 174
>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 91]
Length = 494
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 66 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 124
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 125 KSGACRI-IDVAVGADAGGL 143
>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
Length = 690
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
Length = 690
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 690
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 469
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+N + + + ++ +++ K + + + I D + K +++ G G+ I VL
Sbjct: 24 ANALEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTK-IMVFGMQAGTATITVLNEQ 82
Query: 92 NDILLDTEIATFANEQST 109
++ +I + Q
Sbjct: 83 ERVIYSNKIRVVHDTQEL 100
>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
Length = 642
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV
Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLAVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGRSGACRV-IDVAVGADAGGL 172
>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
Length = 447
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+A K N + + VG+ IL+FD + V + D I DV + V I
Sbjct: 32 SASAQVKVDAINGQVLELTVGEGTILRFDEPVESVFLADTAIADVRVV-SPGVVYIYATK 90
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQ 107
G TN+I L + ++ N +
Sbjct: 91 TGDTNLIALSADQMTRGTVQVRVSGNPR 118
>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 646
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV
Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLAVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGRSGACRV-IDVAVGADAGGL 172
>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
CH34]
gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
CH34]
Length = 620
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIR------IAVGQSLILQFDVLPKQVIVGDDKIV 62
+ P+ A+ + S IR + +G+S ++ + +G+ +V
Sbjct: 60 MTISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVV 119
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ +T+ + G+++G+TN+IV G + + + A+
Sbjct: 120 QATMV-SPQTLYVLGRSVGTTNMIVQGRSGGCSI-INVVVNADSNGLQT 166
>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
pseudomallei 1710b]
gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
pseudomallei 1710b]
gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 690
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 462
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +I + VGQS ++ + V + D + DV ++ ++ G +G T+++++
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKT-PSARSALVFGAKVGKTDLVIV 78
Query: 89 GHNNDILLDTEIATFANEQS 108
G + + + + S
Sbjct: 79 GKEGEAIAHYRLNVKNSGLS 98
>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
Length = 690
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
Length = 690
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 429
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL ++ + +V++T K G+T
Sbjct: 4 ASLASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 63
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N+++ D + V
Sbjct: 64 NVMLWERGRDEPTVWSVEVVDAAAHAV 90
>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
Length = 673
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
Length = 462
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +I + VGQS ++ + V + D + DV ++ ++ G +G T+++++
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKT-PSARSALVFGAKVGKTDLVIV 78
Query: 89 GHNNDILLDTEIATFANEQS 108
G + + + + S
Sbjct: 79 GKEGEAIAHYRLNVKNSGLS 98
>gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1]
gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 150
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + I +G + +L + + V+VG+ I DV ++ +T+ + GK G T + VL
Sbjct: 25 TEALEIPLGGATLLPMRGVARSVVVGNPAIADV-TVDGPRTITVFGKAPGGTTLAVLDAG 83
Query: 92 NDILLDTEIATFANEQSTVRV--------YTPGTLSFLSCTPR-CLPS 130
+L+ ++ A +++V + G + + C P C P+
Sbjct: 84 GGVLVQRQVVVLAGGETSVTLRYGTGKTWVPGGATAIVDCGPTACAPA 131
>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
Length = 447
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
P S + + G + + V V + +I D + K +VI G G+T+I
Sbjct: 18 ALPSYASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGK-LVIYGIGRGATSI 76
Query: 86 IVLGHNNDILLDTEIAT 102
I + + + E+
Sbjct: 77 IAYDRAGNEIYNAEVVV 93
>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
Length = 685
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
Length = 690
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 656
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
++ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 93 AVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGRSGACRV-IDVAVGADAGGL 172
>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis E264]
Length = 679
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV
Sbjct: 95 AMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIV 153
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 154 QGKSGACRI-IDVAVGADAGGL 174
>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 652
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 93 AVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGRSGACRV-IDVAVGADAGGL 172
>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 536
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+S+++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 82 AVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 140
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 141 QGKSGACRI-IDVAVGADAGGL 161
>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 481
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+RI + + QS+ +Q ++VGD+KI D + +T+ + GK G+T + +
Sbjct: 38 PAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLFS 96
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
+ L +I + +
Sbjct: 97 TDKRSLGALQIEVGVDVSDMAQAIRQVAPKS 127
>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 644
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV
Sbjct: 93 AVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLAVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGKSGACRV-IDVAVGADAGGL 172
>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
Length = 590
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +AV S ++ ++ VG+ +I DV L ++ GK GST ++V
Sbjct: 22 QALAATTLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGND-FLLVGKKPGSTTLLV 79
Query: 88 LGHNNDILLDTEIATFANEQST 109
N + + ++ T
Sbjct: 80 WSDNGREEYN--VFVSGSDAGT 99
>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 441
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+++ + + G + + V VG +I D + E VV+ G LG+T++IV
Sbjct: 21 NSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKII-DETKVVVYGVGLGATSVIVYD 79
Query: 90 HNNDILLDTEIAT 102
+ L + E+
Sbjct: 80 RAGNELYNAEVVV 92
>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 493
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +AVG+S++++ +V + D+ I V+ L + V +TGK G + + I
Sbjct: 47 VPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVL-SPQQVYVTGKKAGGATLTLWNGAGAI 105
Query: 95 LLDTEIATFAN 105
+I +
Sbjct: 106 TQVYDIQVTPD 116
>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 478
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +R+ + + QS+ +Q + ++VGD+KI D + +T+ + GK G+T + +
Sbjct: 37 NPSVHRVFLPMSQSVTIQVNANLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLF 95
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
+ L +I + + +
Sbjct: 96 STDKRSLGVIQIEVGVDVSDMAQAIRQVSPRS 127
>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 657
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
++ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 93 AVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGRSGACRV-IDVAVGADAGGL 172
>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 443
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKN 79
T + + S I +AVG + ++V VGD + DVL ++ + +V++T K
Sbjct: 14 TMTVASLASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKA 73
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
G+TN+++ D + V
Sbjct: 74 PGATNVMLWARGRDEPTVWSVEVVDAAAQAV 104
>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 468
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNII 86
+ I + VG + ++V +GD + DVL ++ +K V++ GK G+TN++
Sbjct: 48 APPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLM 107
Query: 87 VLGHNNDILLDTEIATFANEQSTV 110
+ + D L + +++
Sbjct: 108 LWSRDRDAPLQYTVNVTTPAAASL 131
>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
Length = 408
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + GQ L+ V +++ +GD KI DV L + ++TGK GST++++
Sbjct: 29 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLL-DRRGFLVTGKEQGSTSLLIWT 87
Query: 90 HNNDILLDTEIATFANEQ 107
+ L + +
Sbjct: 88 GCSPEPLRSLVEVEGRGS 105
>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
PAb1]
gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
Length = 416
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + GQ L+ V +++ +GD KI DV L + ++TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLL-DRRGFLVTGKEQGSTSLLIWT 95
Query: 90 HNNDILLDTEIATFANEQ 107
+ L + +
Sbjct: 96 GCSPEPLRSLVEVEGRGS 113
>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
Length = 416
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + GQ L+ V +++ +GD KI DV L + ++TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLL-DRRGFLVTGKEQGSTSLLIWT 95
Query: 90 HNNDILLDTEIATFANEQ 107
+ L + +
Sbjct: 96 GCSPEPLRSLVEVEGRGS 113
>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
Length = 416
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + GQ L+ V +++ +GD KI DV L + ++TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLL-DRRGFLVTGKEQGSTSLLIWT 95
Query: 90 HNNDILLDTEIATFANEQ 107
+ L + +
Sbjct: 96 GCSPEPLRSLVEVEGRGS 113
>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 416
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + GQ L+ V +++ +GD KI DV L + ++TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLL-DRRGFLVTGKEQGSTSLLIWT 95
Query: 90 HNNDILLDTEIATFANEQ 107
+ L + +
Sbjct: 96 GCSPEPLRSLVEVEGRGS 113
>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
Length = 484
Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
+ +PT + + + + GQ+ +L ++ V + + D+ +
Sbjct: 16 GAAAAQDVVPTMRIDREV-GAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVT-P 73
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
V++T K +GST++ + +N L+ + N +
Sbjct: 74 YQVLLTAKGIGSTDLTLWDRDNHPLV-VALQVTRNLEGL 111
>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
taiwanensis LMG 19424]
gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
[Cupriavidus taiwanensis LMG 19424]
Length = 475
Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLG 81
+Q + ++R+ G L+ ++V VG+ + D L L +V++ K G
Sbjct: 43 AQAQDAATARQLRLMAGAQKELRSAQPVERVAVGNPAVADALILRTRGAPSVLLVAKQPG 102
Query: 82 STNIIVLGHNNDILLDTEIATFA 104
T+++V + + A
Sbjct: 103 VTDVMVWTRGGAEPQNYSVQVDA 125
>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 487
Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
+ + + T + + + GQ+ +L ++ V + + D+
Sbjct: 11 MLVAGRAAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKV 70
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ V++T K +GST++ + +N L+ + N +
Sbjct: 71 VT-PYQVLLTAKGIGSTDLTLWDRDNHPLV-IALQVTRNLEGL 111
>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
Length = 566
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMV-SPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDILLDTEIATFANEQST 109
+ + ++A A+
Sbjct: 156 KSGACRI-IDVAVGADAGGL 174
>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
PC184]
gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
PC184]
Length = 443
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+KN + T + + S I +AVG + ++V VGD I DVL ++
Sbjct: 1 MKNTLIAFAIAICTMTFASFASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMK 60
Query: 69 KEK--TVVITGKNLGSTNIIVL--GHNNDILLDTEIA 101
+ +V++T K G+TN+++ G + + + E+
Sbjct: 61 GSRSGSVLLTAKAPGATNVMLWERGRDEPTIWNVEVV 97
>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 477
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
+ + ++ + + +AVG + ++V VGD + D+L ++
Sbjct: 8 LAIAVSALALSSWASAAGPEAG-VDLAVGAQRQIASGRNLQRVAVGDPAVADILIIKGGG 66
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
V++ GK+ G+TN+++ + +
Sbjct: 67 GVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA 102
>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
Length = 408
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ + +AV QS +L F ++V V + +I DVL + V++ GK G T +
Sbjct: 20 AATALANDILTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGT-EVLVVGKAPGLTTM 77
Query: 86 IVLGHNNDILLDTEIAT 102
V + E+
Sbjct: 78 HVWTEAGRATYEVEVGV 94
>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 539
Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G P A T + + I++G+ ++ V V D+++ DV ++ + + G
Sbjct: 39 GAPLHAQGMT--SPARTVTISIGRGELVTVPGRMADVFVADERVADVQ-VKSTNQLYVFG 95
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
K G T I D++ + N S
Sbjct: 96 KAGGETTIYASNAKGDVVWSANVRVGNNLDS 126
>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 466
Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
V S + + S I++A G+++ ++ ++++GD +I V L
Sbjct: 18 LCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPL 77
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
++ I G LGST++ + + + +I +
Sbjct: 78 TD-RSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDT 115
>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
Length = 469
Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + V Q+ I+ D + V V D KIV V+ + V+++GK++GST+++++G
Sbjct: 21 AESPLVLHVNQNQIITVDGDIQDVFVSDPKIV-VVHAPSSRHVMVSGKDIGSTDLLIMGE 79
Query: 91 NNDILLDTEIATFAN 105
N L ++ A+
Sbjct: 80 NAQTLAHYKLNVNAD 94
>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
Length = 473
Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 20 PTTASQKTPEDNSNR----IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--- 72
P A +TP S+ + ++ G ++ +P +V +GD I V L+
Sbjct: 26 PQVAVGQTPAAPSSAAPFVLTLSTGFQKVISLPGIPARVSIGDPTIASVTVLKPTDRGGK 85
Query: 73 ---VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
V++TG GST++++ + ++ T+ L
Sbjct: 86 NAGVLVTGLKTGSTSLLIWDRGASMARVITVSVTGKAAETISTLKDLNLET 136
>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
Length = 444
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + G + + V V D+ + D + + VV+ G G+T++IV
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIV-DQNKVVVYGVGQGATSVIVYDRG 81
Query: 92 NDILLDTEIAT 102
+ + ++E+
Sbjct: 82 GNEIYNSEVVV 92
>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
Length = 466
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 8 EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
V S + + S I++A G+++ ++ ++++GD +I V L
Sbjct: 18 LCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPL 77
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
++ I G LGST++ + + + +I +
Sbjct: 78 TD-RSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDT 115
>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 444
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + G + + V V D+ + D + + VV+ G G+T++IV
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIV-DQNKVVVYGVGQGATSVIVYDRG 81
Query: 92 NDILLDTEIAT 102
+ + ++E+
Sbjct: 82 GNEIYNSEVVV 92
>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
[Burkholderia xenovorans LB400]
gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
protein [Burkholderia xenovorans LB400]
Length = 454
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVL 88
+ RI + VG L +++ +GD + DVL ++ +K V++ GK G+TN+++
Sbjct: 36 PAQRIALTVGAQQQLAVGHTLQRIAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLW 95
Query: 89 GHNNDILLDTEIATFANEQSTV 110
+ D L + +++
Sbjct: 96 ARDRDAPLQYTVDVTTPAAASL 117
>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 451
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ A+ T + + V + ++L + V + D ++DV + ++I G
Sbjct: 18 GLLVEAATATAGVPT---TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLING 74
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
K +GSTN+IV NND ++ + +
Sbjct: 75 KKIGSTNLIVWEENNDKPTFFDVRVVGDRE 104
>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 443
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 18 GIPTTASQKTP----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-T 72
I +A P D S I +AVG L ++V VGD + DV+ ++ +
Sbjct: 9 AIALSALAMPPLSGAADTSGTISLAVGAQRQLATGRALQRVAVGDPSVADVMVVKGGRGG 68
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
V++ K+ G+TN+++ +D ++ +
Sbjct: 69 VLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAAR 104
>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 490
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNI 85
+ ++ + VG L ++V +GD + DVL ++ +KT V++ GK+ GSTN+
Sbjct: 18 AAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGDKTGGVLLVGKSPGSTNV 77
Query: 86 IVLGHNNDILLDTEIATFANEQSTV 110
++ D L + + ++
Sbjct: 78 MLWEQGKDAPLSYVVNVSSPAAKSL 102
>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 599
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + I VG+S ++ K VG+ IV + + +T+ + G ++G+TN+IV
Sbjct: 112 PVAEHSSVTIPVGKSAMVDVREPVKSRTVGNPSIVQAMLV-SPQTLYLLGSDVGTTNMIV 170
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 171 QGRSGSCTI-IDVSVGADPGGL 191
>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
Length = 470
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLG 81
+Q N+ ++R+ G ++ ++V VG+ + D L L +V++ K G
Sbjct: 38 AQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLVAKQPG 97
Query: 82 STNIIVLGHNNDILLDTEIATFA 104
T+++V L + A
Sbjct: 98 VTDVMVWTRGGAEPLTYNVQVDA 120
>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 466
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S IR+A G+++ ++ ++++GD +I V L ++ I G LGST++ +
Sbjct: 42 SRSIRVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTD-RSFYILGNELGSTSVTIFDAE 100
Query: 92 NDILLDTEIATFANE 106
+ + +I +
Sbjct: 101 KNPVGIIDIEVTLDT 115
>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
Length = 443
Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGST 83
+ I +AVG + ++V VGD I DVL ++ ++ V++ K G+T
Sbjct: 18 ASLASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGAT 77
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N+++ D + V
Sbjct: 78 NVMLWERGRDEPTVWNVEVVDAAAHAV 104
>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
Length = 443
Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGST 83
+ I +AVG + ++V VGD I DVL ++ ++ V++ K G+T
Sbjct: 18 ASLASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGAT 77
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N+++ D + V
Sbjct: 78 NVMLWERGRDEPTVWNVEVVDAAAHAV 104
>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 595
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + I VG+S ++ K VG+ IV + + +T+ + G ++G+TN+IV
Sbjct: 108 PVAEHSSVTIPVGKSTMVDVREPVKSRSVGNPAIVQAMLV-SPQTLYLLGSDVGTTNMIV 166
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + +++ A+
Sbjct: 167 QGRSGSCTI-IDVSVGADPGGL 187
>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
Length = 451
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ T + V + ++L + V + D ++DV + ++I GK +GSTN
Sbjct: 22 EATNATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTN 81
Query: 85 IIVLGHNNDILLDTEIATFANEQ 107
+IV NN+ ++ + +
Sbjct: 82 LIVWEENNENPTFFDVRVVGDRE 104
>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
Length = 451
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 31/78 (39%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
++ + + + ++V + D + D++ L ++ ++ GK G+T +++
Sbjct: 30 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 89
Query: 91 NNDILLDTEIATFANEQS 108
++ + Q
Sbjct: 90 KQAEPQRLQVRVQSAVQG 107
>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
Length = 618
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G + + + + + VG+S ++ + +G+ +V + +T+ +
Sbjct: 76 SGEARGPNCTGAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMV-SPQTLYVL 134
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G+ +G+TN+IV G + + + A+
Sbjct: 135 GRAVGTTNMIVQGRSGSCSI-INVVVNADAGGLQT 168
>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
Length = 433
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 31/84 (36%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
++ + + + ++V + D + D++ L ++ ++ GK G+T
Sbjct: 6 APATSVAADDLVLQAREQRPWSLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTT 65
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
+++ ++ + Q
Sbjct: 66 LLLWHRKQAEPQRVQVRVQSAVQG 89
>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 479
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIV 87
+ ++ IAVG L ++V +GD + DVL ++ +KT V++ GK+ G+TN+++
Sbjct: 29 GGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVML 88
Query: 88 LGHNNDILLDTEIATFANEQSTV 110
D L + + ++
Sbjct: 89 WEQGKDAPLSYVVNVSSPAAKSL 111
>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 647
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV
Sbjct: 93 AVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMV-SPQTLYILGLSVGTTNMIV 151
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 152 QGKSGACRV-IDVAVGADAGGL 172
>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
Length = 452
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 31/78 (39%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
++ + + + ++V + D + D++ L ++ ++ GK G+T +++
Sbjct: 31 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 90
Query: 91 NNDILLDTEIATFANEQS 108
++ + Q
Sbjct: 91 KQAEPQRMQVRVQSAVQG 108
>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
Length = 621
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + + VG+S ++ + +G+ +V + +T+ + G+ +G+TN+IV
Sbjct: 86 AIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMV-SPQTLYVLGRTVGTTNMIV 144
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
G + + + A+
Sbjct: 145 QGRSGSCSI-INVVVNADSGGLQT 167
>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 454
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT---VVITGK 78
+++ + + G ++ +++ +G+ +I D L L+ T V+I K
Sbjct: 23 SSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKGRGTATSVLIIAK 82
Query: 79 NLGSTNIIVLGHNN-DILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G+ N++V + ++ A V G + +S P+
Sbjct: 83 KPGAANVMVWTQGGVATTYNVQVDAAAPVPGDPAVVAQGDTAVVSGQPK 131
>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 440
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + I + + V + + I D ++ K +VI G +GST++IV G
Sbjct: 26 SAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNK-LVIFGVGVGSTSVIVYG 84
Query: 90 HNNDILLDTEIAT 102
+ +TE+
Sbjct: 85 KGGSEIYNTELIV 97
>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
Length = 454
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT---VVITGK 78
+++ + + G ++ +++ +G+ +I D L L+ T V+I K
Sbjct: 23 SSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKGRGTATSVLIIAK 82
Query: 79 NLGSTNIIVLGHNN-DILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G+ N++V + ++ A V G + +S P+
Sbjct: 83 KPGAANVMVWTQGGVATTYNVQVDAAAPVPGDPAVVAQGDTAVVSGQPK 131
>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
Length = 481
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +R+ + + QS+ + + ++VGD+KI D + +T+ + GK G+T + +
Sbjct: 37 NPSVHRVFLPMSQSVTIAVNATLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLF 95
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
L +I + +
Sbjct: 96 SPEKRSLGVIQIEVGVDVSDMAQAIRQVAPRS 127
>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
Length = 447
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + G + + V V D +I D + K +VI G G+T+I
Sbjct: 18 PASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGK-LVIYGIGRGATSI 76
Query: 86 IVLGHNNDILLDTEIAT 102
I + + + E+
Sbjct: 77 IAYDRAGNEIYNAEVVV 93
>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
Length = 447
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + G + + V V D +I D + K +VI G G+T+I
Sbjct: 18 PASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGK-LVIYGIGRGATSI 76
Query: 86 IVLGHNNDILLDTEIAT 102
I + + + E+
Sbjct: 77 IAYDRAGNEIYNAEVVV 93
>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 474
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLGHN 91
RI + VG L ++V +GD + DVL ++ +K V++ GK G+TN+++ +
Sbjct: 59 RIALTVGAQQQLAVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARD 118
Query: 92 NDILLDTEIATFANEQSTV 110
D L + +++
Sbjct: 119 RDAPLQYTVDVTTPAAASL 137
>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 467
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + G+S ++Q + + + K+ D + E+ V++ K+ G T++I
Sbjct: 38 RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEII-GERGVMVYAKSEGKTDLIAFDK 96
Query: 91 NNDILLDTEIAT 102
N D L+ T +
Sbjct: 97 NGDQLVKTTLVV 108
>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 616
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+ + + + + + + VG+S ++ + +G+ + + +T
Sbjct: 69 SAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNPLVAQATMV-SPQT 127
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ + G +G+TN+IV G + + + A+
Sbjct: 128 LYVVGMAVGTTNMIVQGKSGACEV-INVVVNADSGGLQT 165
>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 419
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G + + V V D+ + D + + VV+ G G+T++IV +
Sbjct: 1 MNLDQGAAKTINLKRQIDTVFVADNTVADYRIV-DQNKVVVYGVGQGATSVIVYDRGGNE 59
Query: 95 LLDTEIAT 102
+ ++E+
Sbjct: 60 IYNSEVVV 67
>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 456
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKI 61
HR +Q + G+ + + D S I + +Q QV + + I
Sbjct: 5 HRIKQVLFASILAPLIGL-LSITNAFAADRS----ITLNDGQHIQLKSPIGQVFINNPDI 59
Query: 62 VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
VD + T+V+ +G + +IV G + D+LL I
Sbjct: 60 VDYKIINDN-TIVVFANAIGQSRLIVYGIDGDVLLSDRIIV 99
>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 461
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + QS +L FD + V + ++V V + ++ ++I G+ +G T+++V
Sbjct: 12 AVAAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHS-PSDQQLLIYGRKVGRTDLVVT 70
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTP---GTLSFLS 122
+ L + A+ ++ + S
Sbjct: 71 AQDGRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFS 107
>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 616
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T++ A +T + S + + VG+S ++Q + +G+ + + +T
Sbjct: 70 TMQSAAARGPACTRTQSEQS-TVVVPVGKSTLMQTAEPVRNRTLGNPLVAQATMV-SPQT 127
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ + G +G+TN+IV G + + + A+
Sbjct: 128 LYVVGMAVGTTNMIVQGKSGACEV-INVVVNADSGGLQT 165
>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 478
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE--KEKTVVI 75
G + + I VG L F +V VG+ K V L + +I
Sbjct: 31 GGAHPSWAAHQSGGYRALNIPVGTQQTLSFTEPAYRVAVGNPKTASVAPLPRSGGRQFLI 90
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATF 103
TG + G+T+++V + ++
Sbjct: 91 TGLSTGTTSLLVWNLGHKTPKVWQLQVS 118
>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 474
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLGHNN 92
+ I VG L ++V +GD + DVL + ++T V++ GK+ GSTN+++
Sbjct: 25 LDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGDRTGGVLLIGKSPGSTNVMLWEQGK 84
Query: 93 DILLDTEIATFANEQSTV 110
D L + + ++
Sbjct: 85 DAPLSYVVNVSSPAAKSL 102
>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
Length = 479
Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + QS +L FD + V + ++V V + ++ ++I G+ +G T+++V
Sbjct: 30 AVAAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHS-PSDQQLLIYGRKVGRTDLVVT 88
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTP---GTLSFLS 122
+ L + A+ ++ + S
Sbjct: 89 AQDGRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFS 125
>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 456
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
I + +Q + +V + + I D + T+V+ +G + +IV G NND+L
Sbjct: 34 SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDN-TLVVFANGVGQSRLIVYGTNNDVL 92
Query: 96 LDTEIAT 102
L I
Sbjct: 93 LSDRIIV 99
>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
Length = 491
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG S +++ V V D +I DV A + + G+ G T + L + +
Sbjct: 66 MTLDVGTSEMVRLSAPATNVYVADPEIADVQA-ASGTVIFVLGRKPGRTTVYALTEGDRV 124
Query: 95 LLDTEIAT 102
+L +I
Sbjct: 125 VLHRDIRV 132
>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + T +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + T +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + T +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + T +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
Length = 460
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + T +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 443
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 18 GIPTTASQKTP----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-T 72
I +A P D S I +A+G + ++V VGD + DVL ++ +
Sbjct: 9 AIALSALAMPPLSDAADTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGG 68
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
V++ KN G+TN+++ D + +
Sbjct: 69 VLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAAR 104
>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
Length = 460
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + GQS +++ D V V I D L + T ++ K G I+
Sbjct: 25 AAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEIL-DDNTFMLYAKAEGRAEIVAFD 83
Query: 90 HNNDILLD 97
+ L +
Sbjct: 84 VDGTPLTE 91
>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
Length = 456
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQ+ +++ + V ++ D L + + ++ K G T I+V
Sbjct: 26 AKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQIL-DDNSFMLYAKGEGKTEIVVFDFE 84
Query: 92 NDILLDTEIAT 102
+ L + ++
Sbjct: 85 GNALTEDVVSV 95
>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 443
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 18 GIPTTASQKTP----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-T 72
I +A P D S I +A+G + ++V VGD + DVL ++ +
Sbjct: 9 AIALSALAMPPLSDAADTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGG 68
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
V++ KN G+TN+++ D + +
Sbjct: 69 VLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAAR 104
>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
Length = 495
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 16 KKGIPTTASQK----TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
G +AS + T ++ + + ++L L +++G ++DV+ L K
Sbjct: 28 GPGFAGSASAQEKSITLGESVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSD-K 86
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
++ I GK G+TNI V G + +L +I ++ S
Sbjct: 87 SLFIRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVASAIRSAAPS 134
>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
Length = 634
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + +AVG+S+++ + +G+ + L ++T+ + G ++G+TN+IV G
Sbjct: 99 RDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQA-TLVSQRTLYVVGMSVGTTNMIVQG 157
Query: 90 HNND-ILLDTEIATFANE 106
+ ++D + A
Sbjct: 158 RSGACQIIDVSVGVDAEG 175
>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 434
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V VGD + DVL ++ + +V++ K GST+
Sbjct: 12 AARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKAAGSTS 71
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 72 LMVWERGRDEPAVYTVNVVSGAAR 95
>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
EO147]
Length = 432
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V VGD + DVL ++ + +V++ K GST+
Sbjct: 10 AARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKAAGSTS 69
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 70 LMVWERGRDEPAVYTVNVVSGAAR 93
>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 614
Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A +T + S + + VG+S ++Q + +G+ I + KT+ + G +G+
Sbjct: 80 ACTRTQSEQS-TVVVPVGKSTLMQTAEPVRNRTLGNPLIAQATMV-SPKTLYVVGMAVGT 137
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVR 111
TN+IV G + + + A+
Sbjct: 138 TNMIVQGKSGACEV-INVVVNADAGGLQT 165
>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
Length = 426
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
N+ + I+ G+S I++ + V V + D + + ++++ K+ G+T II+
Sbjct: 17 ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELV-NKNSIIVYAKSEGTTEIILFD 75
Query: 90 HNNDILLDTEIAT 102
+ +L I
Sbjct: 76 DKHQVLAKKTILV 88
>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 494
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + V +S+++ ++V + + +++ + + I GK +GST +
Sbjct: 23 PVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVI-SPTQLQINGKKVGSTTL 81
Query: 86 IVLGHNNDILLDTEIATFANEQ 107
IV ++ NE
Sbjct: 82 IVWDTAGKTSF-FDVRVKRNES 102
>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 467
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ S TP ++ + + +G +L + ++ VGD ++DV L
Sbjct: 26 MAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAMPLARLAVGDPNVLDVKVLR 85
Query: 69 KEK-----TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
+++T K GST + + + ++ +
Sbjct: 86 STGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSSPS 127
>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 700
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + I +G+S ++ K VG+ IV + + +T+ + G ++G+TN+IV
Sbjct: 111 AIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLV-SPQTLYLLGTDVGTTNMIV 169
Query: 88 LGHNNDILLDTEIATFANEQST 109
G + + ++A A+
Sbjct: 170 QGRSGSCTV-IDVAVGADPGGL 190
>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 460
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V I D L + + +I K G T +
Sbjct: 26 NAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEIL-DDNSFIIYAKEEGRTEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GVDGRPLTSDTVNV----DSVVT 103
>gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia
pseudomallei K96243]
gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei
B7210]
gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei
GB8 horse 4]
gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei
2002721280]
gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia
pseudomallei K96243]
gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei
1710b]
gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC
10229]
gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei
2002721280]
gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC
10399]
gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei
GB8 horse 4]
gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 441
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
+ I +A G + ++V + D + DVL ++ + V++ K G+T+
Sbjct: 19 AARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTS 78
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 79 LMVWERGRDEPAAYTVNVVSGAAR 102
>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 441
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V +GD + DV+ ++ + V++ K GSTN
Sbjct: 19 AARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKAAGSTN 78
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 79 LMVWERGRDEPSVYTVNVASGAAR 102
>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 464
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
S + + IR+A G+ L ++ ++++GD +I + L + + G+
Sbjct: 36 ANGDSIQVSVAKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATINPLTD-HSFYVLGQG 94
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANE 106
LG+T I + + ++ ++ +
Sbjct: 95 LGTTGIALYDESKRLIGTFDVEVTLDT 121
>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
[Ralstonia eutropha JMP134]
gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
[Ralstonia eutropha JMP134]
Length = 633
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++ K +G+ +V + +T+ + G+ +G+TN+IV
Sbjct: 87 AVRQESSVIVPVGKSQLITLQEPVKNRTLGNPNVVQATMV-SAQTLYVLGRTVGTTNMIV 145
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
G + + + A+
Sbjct: 146 QGRSGSCSI-INVVVNADAGGLQT 168
>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CMR15]
Length = 467
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTVVITG 77
A+ + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 35 APAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIA 94
Query: 78 KNLGSTNIIVLGHNNDIL-LDTEIATFANEQSTVRVYTPGTLSFLS 122
K G+ NI+V L + ++ + + G+ + L+
Sbjct: 95 KKPGAANILVWTQGGTALTYNVQVDAEPRGAGSPDLAVQGSTAVLT 140
>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
Length = 663
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + VG+S ++ + +G+ +V + +++ + G+++G+TN+IV
Sbjct: 99 AVRGESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQATMV-SPQSMYLLGRSVGTTNMIV 157
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
G + + + A+
Sbjct: 158 QGRSGACSI-VNVVVNADAGGLQT 180
>gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM
8797]
Length = 546
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 15 RKKGIPTTASQKTPEDNSN----------RIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+KK + S KT E + + S IL+ + +V + D ++V
Sbjct: 38 KKKNLAPVISTKTKEKVHQLVDQIYESEVELSVQQRHSKILKMKMDVFRVAIADPSKIEV 97
Query: 65 LALEKEKTVVITGKNLGSTNIIVL--GHNNDILLDTEIATFANEQ 107
+A + V + GK+ G+T + + N +L ++ +
Sbjct: 98 VAF-GSQEVEVIGKDTGTTTMTLWLGDEANPQILSVQVKVEGDNS 141
>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 482
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
I++A G+ + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 54 SIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALFDEKKQ 112
Query: 94 ILLDTEIATFANEQSTVRVYT 114
++ +I +
Sbjct: 113 LVGTVDIEVTLDTDQLASTIR 133
>gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH]
gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU]
gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC
23344]
gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC
10247]
gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH]
gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU]
gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 432
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
+ I +A G + ++V + D + DVL ++ + V++ K G+T+
Sbjct: 10 AARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTS 69
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 70 LMVWERGRDEPAAYTVNVVSGAAR 93
>gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
Length = 432
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
+ I +A G + ++V + D + DVL ++ + V++ K G+T+
Sbjct: 10 AARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTS 69
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 70 LMVWERGRDEPAAYTVNVVSGAAR 93
>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
Length = 464
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIV 87
S I +AV +L P ++ V D + DV L + V++ GK+ G+T + V
Sbjct: 46 SQDISLAVKGQQLLPLPGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQV 105
Query: 88 LGHNNDILLDTEIATFANEQ 107
N+ + Q
Sbjct: 106 WARNSRSPATWTVHVTGPVQ 125
>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 481
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
I++A G+ + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 53 SIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALFDDKKQ 111
Query: 94 ILLDTEIATFANEQSTVRVYT 114
++ +I +
Sbjct: 112 LVGTVDIEVTLDTDELANTIR 132
>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 456
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
I + + +V + + I D + T+V+ K +G + ++V G N D+L
Sbjct: 34 SITLNDGKHISVKQPIGKVFISNPDIADYKVINDT-TLVVFAKGVGHSRLLVYGANEDVL 92
Query: 96 LDTEIAT 102
L I
Sbjct: 93 LSDRIIV 99
>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
Length = 548
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S + I + QS L +V + + KI DV L ++ + G + G+T
Sbjct: 20 SPAPAYAQFTPLSIDLNQSYYLNTGRNITRVAIANPKIADVSLL-DGTSLNVIGISPGTT 78
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ V N + I + ++
Sbjct: 79 TLNVWASNGYR-YEYRITVSDQDSGLAKIVQ 108
>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
Length = 409
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + ++L L +++G ++DV+ L +++ + GK +G+TNI V G +
Sbjct: 49 QHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSD-RSLFVRGKKIGATNISVYGDDK 107
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLS 119
+L +I ++ S
Sbjct: 108 SLLGVIDIRVASDFSEVASAIRSAAPS 134
>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
Length = 461
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
I++A G+ + + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 33 SIKVAKGKPKTIVTNAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALFDEKKQ 91
Query: 94 ILLDTEIATFANEQSTVRVYT 114
++ +I +
Sbjct: 92 LVGTVDIEVTLDTDQLASTIR 112
>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
BNC1]
gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
[Chelativorans sp. BNC1]
Length = 473
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 1/100 (1%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R + + + R+ I +G+ L L + + V D I
Sbjct: 53 RSGALVFFTRLLSLLALLLCTWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIA 112
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
D+ E I GK+ G T + + L ++
Sbjct: 113 DIKESPGEAH-FIYGKSAGETTVTGVDLGGRTLFQYDMVV 151
>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 477
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNIIVLGHN 91
I +AVG + ++V VGD + DVL ++ + V++ K GSTN+++
Sbjct: 29 SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88
Query: 92 NDILLDTEIATFANEQSTV 110
D + + V
Sbjct: 89 RDEPMVWNVNVVDAAAHAV 107
>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 478
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ I + V +S IL D +V + + V+ L + ITG+ LG+T + +
Sbjct: 38 EAPGVISLVVSKSTILTADAPVSRVSLAQPETASVVVL-SPTQIYITGRKLGTTTLTLW- 95
Query: 90 HNNDILLDTEIATFANEQST 109
+ ++ +
Sbjct: 96 SGGQVSGVYDLVITPDVTRL 115
>gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 432
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
+ I +A G + ++V + D + DVL ++ + V++ K G+T+
Sbjct: 10 AARAAETGAIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTS 69
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 70 LMVWERGRDEPAAYTVNVVSGAAR 93
>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
Length = 530
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
++ +R+ + + +LQ +V+V I + V G GST L
Sbjct: 70 AKPTSSLRVFLKEGALLQLPSAAAKVLVATPGIASYQ-MPSPDQVFFFGTAAGSTTFYAL 128
Query: 89 GHNNDILLDTEIATFAN 105
++ ++ N
Sbjct: 129 DEAGAVIAAVQVTVEHN 145
>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum
DSM 5501]
Length = 414
Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+++ G+S +L+ V ++ V D ++ D++ + ++ ++I GK+ G+T + +
Sbjct: 34 LQLGTGKSELLKV-VDLERAAVADPEVADIVTI-SQEELLINGKSEGTTTLHLWDQKGHR 91
Query: 95 LLDTEIATFANEQSTV 110
++ + E +
Sbjct: 92 --SYQVEVYKEEARVI 105
>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
PSI07]
Length = 462
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTVVITGKNLGS 82
+ + G ++ +++ +G+ ++ D L L+ +++I K G+
Sbjct: 27 AQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIVAKKPGA 86
Query: 83 TNIIVLGHNNDILLDTEIATFANEQS 108
NI+V + + A +
Sbjct: 87 ANIMVWTQGGTAIT-YNVQVDAAPRG 111
>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 496
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
++ +A ++ ++ +++G +++DV+ L +++ I GK G+TNI V N
Sbjct: 50 QQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSD-QSLFIRGKQTGATNISVYDDNK 108
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLS 119
++ ++ A+ S
Sbjct: 109 ALVGVIDVRVAADFSEVASAIRSTAPS 135
>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
solanacearum GMI1000]
gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
[Ralstonia solanacearum GMI1000]
Length = 454
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTVVITGKNLGSTN 84
+ + G ++ +++ +G+ ++ D L L+ +++I K G+ N
Sbjct: 29 GMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAAN 88
Query: 85 IIVLGHNNDIL-LDTEIATFANEQSTVRVYTPGTLSFLS 122
I+V L + ++ + + G+ + L+
Sbjct: 89 IMVWTQGGTALTYNVQVDAEPRGAGSPDLAVQGSTAVLT 127
>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
[Aeromonas veronii B565]
gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
family [Aeromonas veronii B565]
Length = 465
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + QS +L FD V + ++V V + ++ ++I G+ +G T+++V
Sbjct: 16 AAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHS-PSDQQLLIYGRKVGHTDLVVT 74
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTP---GTLSFLS 122
+ L + A+ ++ + S
Sbjct: 75 ALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFS 111
>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 461
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 5 RQREIKNETVRKK----GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
RQ + TVR + + P + + I++G IL+ ++ + +
Sbjct: 10 RQVFHRLRTVRWPMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPS 69
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
IVDV + + + I G++ G+T++ +
Sbjct: 70 IVDVKVISS-RELRILGQSEGTTDLDIWFAGG 100
>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 477
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + GQ+ +L +V V D + D+ + + +++T K+ G+T++ +
Sbjct: 36 GAGSELALEAGQNRLLIISEEIGRVAVADPSVADLKVVTTNQ-LLLTAKSSGTTDLTLWN 94
Query: 90 HNNDILLDTEIATFAN 105
+N+ L+ + N
Sbjct: 95 RSNEPLV-IALVVTRN 109
>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
Length = 405
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
MH + + V + + + + G LQ V ++ +GD K
Sbjct: 10 MHMAWALMLSSLPVGMALAAPGNCSALGQLPA-VVEVGEGLQQELQSPVAITRLAIGDPK 68
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
I DV + ++ ++TG G+T+++V + + S +
Sbjct: 69 IADVR-VNGDRHFLLTGVASGATSLMVWTACASTPRQSMVFVKGRATSALT--------S 119
Query: 121 LSCTPRCLPSSP 132
LS +P P P
Sbjct: 120 LSLSPSEDPLLP 131
>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
family protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
family [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 465
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + QS +L FD V + ++V V + ++ ++I G+ +G T+++V
Sbjct: 16 AVAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHS-PSDQQLLIYGRKVGRTDLVVT 74
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTP---GTLSFLS 122
+ L + A+ ++ + S
Sbjct: 75 ALDGRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFS 111
>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 453
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ S I V + ++ +V V D IVD + E ++VI K +G ++
Sbjct: 22 SSMAYSGETYITVNDAKNIELSERITKVFVSDPDIVDYNVI-NENSIVIFSKAVGQARLM 80
Query: 87 VLGHNNDILLDTEIA 101
+ G + +L I
Sbjct: 81 IYGESEKLLYSERII 95
>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
Length = 456
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
I + +Q ++ +V + + ++ D + E T+V+ +G + +IV G ++ +L
Sbjct: 34 SITLNDGQHIQVNMPIGKVFISNPEVADYKVI-NENTLVVYANEVGQSRLIVYGTDSSVL 92
Query: 96 LDTEIAT 102
L I
Sbjct: 93 LSDRIVV 99
>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
Length = 495
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + ++L L +++G ++DV+ L K++ + GK G+TNI V G +
Sbjct: 49 QHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSD-KSLFVRGKKTGATNISVYGDDK 107
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLS 119
+L +I ++ +
Sbjct: 108 SLLGVIDIRVASDFSEVSAAIRSAAPT 134
>gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700]
gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700]
Length = 460
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + G + ++Q + V + D L + T +I K+ G +
Sbjct: 26 NAYAQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEIL-DDNTFIIYAKDEGKAEVTAF 84
Query: 89 GHNNDILLDTEIATFANEQSTVR 111
G + L + S V
Sbjct: 85 GADGRPLTSDTVNV----DSVVT 103
>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
Length = 456
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T ++R I + + +V + + + D + T+V+ +G + +I
Sbjct: 26 TKTHAADR-SITLNDGQHISVKQPIGKVFISNPDVADYKVINDT-TLVVFANGIGQSRLI 83
Query: 87 VLGHNNDILLDTEIAT 102
V G + D+LL I
Sbjct: 84 VYGIDEDVLLSDRIIV 99
>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
Length = 441
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+P R+ + G+S++L V V D + D ++ V + GK +G T++I
Sbjct: 28 SPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADA-SISSNNRVFVFGKEVGETSLI 86
Query: 87 VLGHNNDILLDTEIATFA 104
D + +
Sbjct: 87 ATSTYADSDMTFTVVVTH 104
>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae
BGR1]
gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae
BGR1]
Length = 476
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 5 RQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+++ I + + + D + +AVG + ++V +GD + DV
Sbjct: 2 KKKLIALAMAMSAVMASAVANAAGLDAG--VDLAVGAQRQIATGRSLQRVAIGDPAVADV 59
Query: 65 LALEKE-KTVVITGKNLGSTNIIVLGHN 91
L ++ V++ GK+ G+TN+++
Sbjct: 60 LVVKGNGGGVLLIGKSAGTTNVMLWERG 87
>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
Length = 150
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
++ + VG+S +++ + VG+ +V L + T+ I G ++G+TN+I+
Sbjct: 59 AAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVA-PDTLYIAGVDVGTTNMIIQ 117
Query: 89 GHNNDILLDTEIATFANEQST 109
G + + +I + +
Sbjct: 118 GKSG-LCSVLDITVAMDPSAL 137
>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
Length = 465
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + G + ++Q + V I D L + + +I K G I N
Sbjct: 30 AKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEIL-DDNSFIIYAKEQGRAEISAFDAN 88
Query: 92 NDILLDTEIAT 102
L + +
Sbjct: 89 GKTLTNDVVNV 99
>gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus
flagellatus KT]
Length = 453
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ I +++GQ + + V ++V V + +++ + L KT++I K +G+T I +
Sbjct: 26 QAEEIMVSMGQQRLYEHTVTLQRVAVANPEVL-AVTLTSPKTMMIVPKAVGATEISLWDS 84
Query: 91 N 91
Sbjct: 85 Q 85
>gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 470
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S + G + +++ D + V + D L + + +I K G + G +
Sbjct: 28 SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEIL-DDNSFIIYAKEEGRAEVTAFGQD 86
Query: 92 NDILLDTEIAT 102
L I
Sbjct: 87 GKPLTTDFINV 97
>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 473
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
AS + I G +++ D + + V D K+V+V A ++ + G
Sbjct: 30 PAASGSVAHGAHAVLGIEEGAGKLVKLDGIATNIFVADPKVVEVRA-ASPDSMFVFGVGA 88
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
G T +I + ++ + + +
Sbjct: 89 GQTTVIATSRSGGVVARYTVVVLPSSYRASALRRDVGQQN 128
>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 423
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I + G + ++V +GD + DVL ++ + V++ K GST+
Sbjct: 1 AAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTS 60
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
++V D + +
Sbjct: 61 LMVWERGRDEPAVYTVDVVSGAAR 84
>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
BAA-1116]
gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
Length = 456
Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T ++R I + + +V + + + D + T+V+ +G +I
Sbjct: 26 TKTHAADR-SITLHDGQHISLKQPIGKVFISNPDVADYKVINDT-TLVVFANGIGQARLI 83
Query: 87 VLGHNNDILLDTEIAT 102
V G + D+LL I
Sbjct: 84 VYGIDEDVLLSDRIIV 99
>gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
Length = 162
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQS +++ D V V + D L + T ++ K G I+ +
Sbjct: 27 AKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEIL-DDNTFMLYTKAEGRAEIVAFDVD 85
Query: 92 NDILLD 97
L +
Sbjct: 86 GTPLTE 91
>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 495
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
R+ + +L L +++G ++DV+ L K++ I GK +G+TNI V G +
Sbjct: 49 QRVTLPPNATLTLNTGQAFGDLVIGSADMIDVVPLSD-KSLFIRGKKIGATNISVYGDDK 107
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLS 119
+L ++ ++ S
Sbjct: 108 SLLGVIDVRVASDFSEVAAAIRSAAPS 134
>gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC
51908]
Length = 446
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ + + ++ V + ++ D + +VI G+ LG + V N+++L
Sbjct: 29 VTLNDASSIELKQEIGTVFISQPEVADYK-ITGNNKLVIYGRQLGQARLFVYNKANEVIL 87
Query: 97 DTEIAT 102
+
Sbjct: 88 SQLLHV 93
>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 462
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQS +++ + + V ++ D L + + ++ K G + +I N
Sbjct: 27 AKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEIL-DDNSFMLYAKAEGRSEVIAFDAN 85
Query: 92 NDILLD 97
L +
Sbjct: 86 GTPLTE 91
>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
Length = 484
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 12 ETVRKKGIPTTASQK------TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
++V+ G TA + + + VG S++L K++ VG+ ++
Sbjct: 33 QSVQAPGDSPTAHEARKRMDMHDMGGDETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSY 92
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNND 93
+V+T K G ++++V
Sbjct: 93 T-GGPSEIVLTAKATGVSSLVVWDTQGQ 119
>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
Length = 439
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+A G++ V + I D + VV+ GKN+GS + I
Sbjct: 20 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVI-DSNKVVVFGKNIGSASFIAFDA 78
Query: 91 NNDILLDTEIAT 102
L + +
Sbjct: 79 KGRELFNRLLLV 90
>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 462
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQS +++ + + V ++ D L + + ++ K G + +I N
Sbjct: 27 AKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEIL-DDNSFMLYAKAEGRSEVIAFDAN 85
Query: 92 NDILLD 97
L +
Sbjct: 86 GTPLTE 91
>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
Length = 435
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+A G++ V + I D + VV+ GKN+GS + I
Sbjct: 16 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVI-DSNKVVVFGKNIGSASFIAFDA 74
Query: 91 NNDILLDTEIAT 102
L + +
Sbjct: 75 KGRELFNRLLLV 86
>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 436
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
++ G + + V + + K+ D + + VV+ G+ +G + I L
Sbjct: 27 NLSAGDAKSITTTTEIGSVFISNPKVADYKII-DKYKVVLFGREVGDSVFIAFDVQGREL 85
Query: 96 LDTEIATFANEQS 108
L+ +I N
Sbjct: 86 LNKKIIVSRNYSG 98
>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 462
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQS +++ + + V ++ D L + + ++ K G + +I N
Sbjct: 27 AKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEIL-DDNSFMLYAKAEGRSEVIAFDAN 85
Query: 92 NDILLD 97
L +
Sbjct: 86 GTPLTE 91
>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 462
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQS +++ + + V ++ D L + + ++ K G + +I N
Sbjct: 27 AKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEIL-DDNSFMLYAKAEGRSEVIAFDAN 85
Query: 92 NDILLD 97
L +
Sbjct: 86 GTPLTE 91
>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 436
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
++ G + + V + + K+ D + + VV+ G+ +G + I L
Sbjct: 27 NLSAGDAKSITTTTEIGSVFISNPKVADYKII-DKYKVVLFGREVGDSVFIAFDVQGREL 85
Query: 96 LDTEIATFANEQS 108
L+ +I N
Sbjct: 86 LNKKIIVSKNYSG 98
>gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis
IP 32953]
gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia
pseudotuberculosis IP 32953]
gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia
pseudotuberculosis PB1/+]
Length = 439
Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ +I + +G S I++ V V K D + +V+I K G +
Sbjct: 29 SANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIV-DNNSVIIYAKKEGLAEFTLF 87
Query: 89 GHNNDILLDTEIAT 102
N+ + T +
Sbjct: 88 NKNHQPISKTRVLV 101
>gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia
pseudotuberculosis YPIII]
gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia
pseudotuberculosis YPIII]
Length = 423
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ +I + +G S I++ V V K D + +V+I K G +
Sbjct: 13 SANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIV-DNNSVIIYAKKEGLAEFTLF 71
Query: 89 GHNNDILLDTEIAT 102
N+ + T +
Sbjct: 72 NKNHQPISKTRVLV 85
>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 462
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTVVITGKNLGS 82
+ + + G ++ +++ +G+ ++ D L L+ +++I K G+
Sbjct: 27 AQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAKKPGA 86
Query: 83 TNIIVLGHNNDIL-LDTEIATFANEQST--------VRVYTPGTLSFLS 122
+I+V + + ++ A + V T S
Sbjct: 87 ASIMVWTQGGTAITYNVQVEAEARGAGSPDLAVQGGTAVLTGQVRDVYS 135
>gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27]
gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27]
Length = 171
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ +I + +G S I++ V V K D + +V+I K G +
Sbjct: 13 SANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIV-DNNSVIIYAKKEGLAEFTLF 71
Query: 89 GHNNDILLDTEIAT 102
N+ + T +
Sbjct: 72 NKNHQPISKTRVLV 85
>gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10]
gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1]
gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10]
gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Nepal516]
gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
India 195]
gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis Pestoides A]
gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004]
gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038]
gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 284
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ +I + +G S I++ V V K D + +V+I K G +
Sbjct: 29 SANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIV-DNNSVIIYAKKEGLAEFTLF 87
Query: 89 GHNNDILLDTEIAT 102
N+ + T +
Sbjct: 88 NKNHQPISKTRVLV 101
>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 447
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTV 73
+ + D + + G ++ +++ +G+ ++ D L L+ ++
Sbjct: 4 AALAPGVHAQNMPDGP-VLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSL 62
Query: 74 VITGKNLGSTNIIVLGHNNDIL-LDTEIATFANEQST--------VRVYTPGTLSFLS 122
+I K G+ +I+V + + ++ A + V T S
Sbjct: 63 LIVAKKPGAASIMVWTQGGTAITYNVQVDAEARGAGSPDLAVQGGTAVLTGQVRDVYS 120
>gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703]
Length = 158
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
M R R + + + N+ + ++ GQS +++ V V
Sbjct: 1 MKVARTRYLNQIVLFLVCMIIACFIAVNRANAEPVYLSTGQSYMIKTQEEIDTVFVSAAA 60
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
I D + + ++++ K G+ I+ N+ + + I +T+
Sbjct: 61 IADYELV-GKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILV----DNTIT 106
>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
Length = 485
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +++ Q L F+ V V I + + VV+ G G T+++VLG +
Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVV-GNRKVVVFGSYPGKTSLMVLGTDGRT 59
Query: 95 LLDTEIATFANEQS 108
L + + + S
Sbjct: 60 LYNGLVEVAYDVSS 73
>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
Length = 429
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK----EKTVVITGKNLGSTNIIVLGH 90
+ + V + L L+ +++ V D ++ D+L ++ ++++ GK GST++
Sbjct: 25 LTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKKPGSTSVTAWQR 84
Query: 91 NNDILLDTEIATFANEQSTV 110
N + +++ + Q +
Sbjct: 85 NGPTKV-WQVSVQSALQGLL 103
>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKI 61
HR ++ + V G+ +T + + I + +QF QV + + I
Sbjct: 5 HRVKRALFGSILVTLVGLLSTTNTFAADR-----SITLNDGQHIQFKSPIGQVFINNPSI 59
Query: 62 VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
VD + T+V+ ++G + +IV G ++D+LL I
Sbjct: 60 VDYKIINDN-TLVVFANSVGQSRLIVYGVDDDVLLSDRIIV 99
>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
HW-1]
Length = 482
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + VG ++ +V +GD I DV L ++ITG+ G T ++V
Sbjct: 25 AQDGTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTL-GSGQLLITGQAEGKTTLLVW 82
Query: 89 GHNNDILLDTEIATFANEQSTV 110
+ + +A + + V
Sbjct: 83 KSSGQRVSYL-VAVRKQDPNEV 103
>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CFBP2957]
Length = 462
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK---EKTVVITGKNLGSTNIIVLGHN 91
+ + G ++ +++ +G+ ++ D L L+ +++I K G+ +I+V
Sbjct: 44 VHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAKKPGAASIMVWTQG 103
Query: 92 NDIL-LDTEIATFANEQST--------VRVYTPGTLSFLS 122
+ + ++ A + V T S
Sbjct: 104 GTAITYNVQVDAEARGAGSPDLAVQGGTAVLTGQVRDVYS 143
>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 420
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
++Q + V I D L + T +I K G T + G + L +
Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEIL-DDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNV- 58
Query: 104 ANEQSTVR 111
S V
Sbjct: 59 ---DSVVT 63
>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
Length = 513
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 22 TASQKTPEDNS--NRIRIAVGQSLILQFDVLP--KQVIVGDDKIVDVLALEKEKTVVITG 77
A++ TP + +++GQS +++ ++V V DDKIV V + + VV+
Sbjct: 60 VAARPTPSSTEIVPSVELSLGQSHLVRLPAGVNLQRVKVDDDKIVQV-DVTSPREVVLHA 118
Query: 78 KNLGSTNIIVLGHNND-ILLDTEIA 101
K +GST +I+L + ++D +
Sbjct: 119 KTIGSTMVIILDKSGQSAVMDVRVV 143
>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
Length = 469
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL---EKEKTVVITG 77
A+ + + +R+ G ++ ++V VG+ + D L + V++
Sbjct: 39 PRATAQEAAPAPSTLRLMAGAQKEIRPAQPIERVAVGNPAVADALLIKQRSGPPGVLVVA 98
Query: 78 KNLGSTNIIVL 88
K G T++++
Sbjct: 99 KQPGVTDLMIW 109
>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 480
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD--VLALEKEKTVVI 75
+ A+ +++ + + L+ + ++ + + I + + V +
Sbjct: 27 AAESEATVLINTKPGEPVQLTINRLAKLRSSEVIRRAHIVNPDIAELIYSKTQSPAWVFV 86
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+GK++G+T + + G N IL EI +
Sbjct: 87 SGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGL 120
>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 406
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 19 IPTTASQKTPED-NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+P A P+ + +R+ ++ D +V V D I++V + ++ +++T
Sbjct: 23 LPPGAVAAAPDSWRPDSLRLEAQSQHVISRDQPIIRVAVADPSIMEVEMI-SQQELLLTA 81
Query: 78 KNLGSTNIIVLGHNNDILLDTEIAT-----------FANEQSTVRVYTPGTLSF 120
G+T + + + + + + V V
Sbjct: 82 LAPGATQLRLWHQETEPEMLRVVVVPAAPYQDYDIQVRADIRVVEVSRRALRQS 135
>gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis
IP 31758]
gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis
IP 31758]
Length = 439
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ +I + +G S I++ V V K D + +V+I K G +
Sbjct: 30 ATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIV-DNNSVIIYAKKEGLAEFTLFN 88
Query: 90 HNNDILLDTEIAT 102
N+ + T +
Sbjct: 89 KNHQPISKTRVLV 101
>gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC
29909]
gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC
29909]
Length = 425
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + ++ G+S I++ + V V I D + + ++++ K G+ I+
Sbjct: 14 QAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELV-GKNSIIVYAKKEGTAEFILF 72
Query: 89 GHNNDILLDTEIAT 102
+N ++ T I
Sbjct: 73 NKDNHPMIKTTIMV 86
>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
Length = 463
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S I + G++ L+ + V + + + D + EK VVI + G ++ + G +
Sbjct: 35 SQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVI-DEKQVVIFARENGRASLEIYGGD 93
Query: 92 ND-ILLDTEIAT 102
N+ L+ I
Sbjct: 94 NNATLMTMSIIV 105
>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 444
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNI 85
+ I +AVG + +++ VGD +VDVL ++ +V++ K GSTN+
Sbjct: 23 AAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82
Query: 86 IVL--GHNNDILLDTEIA 101
++ G + + + +
Sbjct: 83 LLWERGRDEPTVWNVNVV 100
>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 444
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNI 85
+ I +AVG + +++ VGD +VDVL ++ +V++ K GSTN+
Sbjct: 23 AAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
++ D +
Sbjct: 83 LLWERGRDEPTVWNVNVVDAAAQ 105
>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
fluorescens Pf0-1]
Length = 422
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G +Q V +V VGD KI DV + ++ V++TG G+T +++
Sbjct: 42 LEVGEGLQQAVQSPVAITRVAVGDPKIADVR-VTGDQGVLLTGVGPGATTLMIWTACAST 100
Query: 95 LLDTEIATFA 104
+ +
Sbjct: 101 PRQSMVFVQG 110
>gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622]
gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin)
family [Myxococcus xanthus DK 1622]
Length = 482
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + VG ++ +V +GD + +V L ++ITG+ G T ++V
Sbjct: 25 AQDGTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTL-GSGQLLITGQAEGKTTLLVW 82
Query: 89 GHNNDILLDTEIATFANEQSTV 110
+ + +A + + V
Sbjct: 83 KSSGQRVSYL-VAVRKQDPNEV 103
>gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca
DW4/3-1]
gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca
DW4/3-1]
gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
Length = 485
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + E + + I + VG ++ ++ +GD + +V + V+I G+ G
Sbjct: 21 SGTALAQERDGSTIALGVGTQKVITVPG-IARIALGDPNVAEVKNI-GNNQVLIIGQTEG 78
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTV 110
T +I+ + + IA + + +
Sbjct: 79 KTTLIIWKSSGQRVTFL-IAVRRQDPNEI 106
>gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 453
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
N+ + ++ G+S +++ V V I D + + ++++ K G+ I+
Sbjct: 30 ANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELV-GKNSIIVYAKQEGTAEFILFN 88
Query: 90 HNNDILLDTEIATFANEQSTVR 111
N+ + + I +T+
Sbjct: 89 QNHHPIKKSAILV----DNTIT 106
>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
assembly [Aromatoleum aromaticum EbN1]
Length = 566
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 31/130 (23%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV----- 64
+ T R T S + + + I VG+S +++ +V ++++G+
Sbjct: 36 SSATPRVAVATTNGSPCGRVEIAPMVTIPVGKSSVIRPEVPVTRILLGNPDNAQAARPSA 95
Query: 65 -------------------------LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
+ L + + GK++GSTN++++ + +
Sbjct: 96 EPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-TALD 154
Query: 100 IATFANEQST 109
+ + S
Sbjct: 155 VTVAMDVTSV 164
>gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum
JF-5]
gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum
JF-5]
Length = 491
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + I G ++ V V D +V V T+ + G G T
Sbjct: 56 RPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRP-ASAHTLFVFGTAPGFTT 114
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
+ V + +A + T S
Sbjct: 115 VAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRS 149
>gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum
ATCC 51196]
Length = 480
Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG+S+ L K+V V D +++ V+IT K G ++++V +
Sbjct: 57 LHLLVGRSMFLDTATPLKRVYVSDPAVLNSFT-ASPHQVLITAKAPGISSLVVWDESGRS 115
Query: 95 ---LLDTEIATFA 104
+ ++I
Sbjct: 116 NVYTVSSDIDVSG 128
>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
Length = 384
Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ VG S +L++ K++ VG+ ++D + L V++TGK G +IV
Sbjct: 32 HLDVGDSAVLKY-QNVKRMSVGNPDVLDAIPL-DNNQVLLTGKVEGGAALIVWDAAG 86
>gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
3TCK]
gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
3TCK]
Length = 461
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ + + L+F V V I+D + + +VI +G +IV G +N +LL
Sbjct: 34 VTLNDANNLEFSQEIGTVFVSQPDILDYKVI-DSRKLVIFSNKIGQAKVIVYGKDNQVLL 92
Query: 97 DTEIAT 102
Sbjct: 93 SQRYHV 98
>gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9]
gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
SS9]
Length = 461
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I + + L+F V V I+D + + +VI +G +IV G N +LL
Sbjct: 34 ITLNDANNLEFPQEIGTVFVSQPDILDYKVI-DNRKLVIFSNKIGQAKVIVYGKENQVLL 92
Query: 97 DTEIAT 102
Sbjct: 93 SQRYHV 98
>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 459
Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ + ++ G+SL+++ V V + + D + TV+I K G +
Sbjct: 29 AANTGDLFMSEGESLVIKKKQNIDTVFVSNPAVADYKIV-DHNTVIIYAKAEGKSEFTFF 87
Query: 89 GHNNDILLDTEIAT 102
N +I +
Sbjct: 88 EPNQNISYHATVMV 101
>gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 471
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + G+ +L F +V + + KI D + + + V++ K G
Sbjct: 23 AQATKPQVRDFTLLEGRGELLTFQNDITKVAISEPKIADAVVI-SPREVMVNAKGPGRAT 81
Query: 85 IIVLGHNNDILLDTEIATFANEQ 107
++V D + EIA +
Sbjct: 82 LVVWETGLDPV-RYEIAVTKDTT 103
>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
Length = 712
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV-------DVLAL------EKEKTVVI 75
+D S + + VG+ ++Q P + I+G+ +I DV +L + V+
Sbjct: 168 QDPSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDVQSLAQLDRPSDARLFVV 227
Query: 76 TGKNLGSTNIIVLGHNNDI---LLDTEIATFANEQSTVRVYTPGTLSF 120
G G+T + + NN L+ + T + V+ ++
Sbjct: 228 YGIQAGTTTLTIWDKNNVPTTFLVRVSVDTLDIQNQIRAVFPGTDVTV 275
>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
Length = 492
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---------KEKTV 73
A + + +++ G+ ++ P ++ VGD ++DV L +
Sbjct: 48 APGAGDMPSGDSLQLVAGRQHLMPLASTPGRIAVGDPNVLDVKLLRATPGSGAGAGGTEL 107
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
++T K GST ++V E+
Sbjct: 108 LLTPKAQGSTTLVVWPQKGGAPQRWEVQVRGQ 139
>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 407
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ G L+ ++ VGD KI DV ++TG G+T+++V +
Sbjct: 42 TFEVGQGLQSELRILAPVTKLAVGDPKIADVQP-SGNDAFILTGLAPGATSLMVWTDCSK 100
Query: 94 ILLDTEIATFANEQSTVR 111
I + + +
Sbjct: 101 IPRQSMVFVKGRATEALT 118
>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
Length = 483
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + +R+ +G L F+ + +GD I + + +++TG G+
Sbjct: 56 AVPGLAQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMV-DARQLLLTGLAAGT 114
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTV----RVYTPGTLSFLS 122
T++ V D ++ + + L+
Sbjct: 115 TSLSVWRDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLA 158
>gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 736
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + ++ + + +S +++ ++ + D ++D+ E E I G +GS
Sbjct: 59 ARIVSMPQVERKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAPFE-EDEFAIIGTAIGS 117
Query: 83 TNIIVL--GHNNDILLDTEIATFANEQSTVRVYTP 115
T + + +N ++ + + N + +R+
Sbjct: 118 TTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYG 152
>gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula
baltica SH 1]
gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC
[Rhodopirellula baltica SH 1]
Length = 589
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIR-------IAVGQSLILQFDVLPKQVIVGDDKI 61
+ +V + + +A+ ++I + V S IL + V ++++
Sbjct: 27 LAMLSVSQPVMAQSATTLASAAGDHQINQTVERMDLIVKSSRILSLGERIPRFQVHNEEV 86
Query: 62 VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + E + + GK G+T I + + L ++ A+ +
Sbjct: 87 LGATPV-SENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREV 132
>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
fluorescens Pf-5]
Length = 417
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ A + + I G LQ V ++ VGD KI DV K ++
Sbjct: 24 QALAAAVAGCSSLAPLPAALEIGEGLQQELQSAVAITRLAVGDPKIADVQT-TGNKAFLL 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFA 104
TG G+T+++V + +
Sbjct: 83 TGMAPGATSLMVWTACASTPRQSMVFVQG 111
>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila
L48]
gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
entomophila L48]
Length = 426
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ T + I + G L+ V +V VG+ K+ DV A E+ V++TG
Sbjct: 24 ALATGKGCAAFDQMPTVIEMDQGLQQELRLPVAITRVAVGEPKVADVQA-SGERAVLLTG 82
Query: 78 KNLGSTNIIVL 88
G+T++++
Sbjct: 83 VGQGNTSLMLW 93
>gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
Length = 608
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 13 TVRKKGIPTTASQKTPEDNSN----RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
TVR+ + + N I + VG+S + ++ VG+ +I+ AL
Sbjct: 91 TVRRPQVASRPYAPISPQNDQGMIPEIEMFVGESRVFPTPG-VARIAVGNGQIMSAAAL- 148
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTL 118
EK V++ +G++++ V + + T R+ T
Sbjct: 149 DEKEVIVFANGVGTSSLFVWNADGRY---QRVKVSIVPGDTTRIARDVTA 195
>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 416
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 20 PTTASQKTP-----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+A + I I G +Q V ++ VGD K+ DV + +
Sbjct: 23 APSAWAASGSCNGLAAMPAAIEIDQGIQQNVQSPVAITRIAVGDPKVADVH-VSNSDGFL 81
Query: 75 ITGKNLGSTNIIVLGH 90
+TG G+T+++V
Sbjct: 82 LTGVAQGTTSLMVWTA 97
>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
C54]
Length = 458
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK----TVV 74
+ TA + I +AV L D P ++ +GD + DV L +V+
Sbjct: 26 LAQTAPAAGASAPARDIAVAVKGQQALMLDGAPVRIAIGDPDVADVKVLAASGKRQASVL 85
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ GK G+T + + N + N Q
Sbjct: 86 LYGKKAGTTQLQIWTGANAAPQVWTVRVAGNVQQV 120
>gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense
DSM 5692]
Length = 455
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + G+S++L+ + +V D ++ L + +T G+ N+I+
Sbjct: 50 RSLELTYGKSVVLKSNREITRVSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGK 108
Query: 93 DILLDTEIATFAN 105
++ EI +
Sbjct: 109 EVSTVYEITVKHD 121
>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira
crunogena XCL-2]
gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
crunogena XCL-2]
Length = 520
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 41 QSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+S I++FD K+ +V + + ++ L K ++++GK G T +I+
Sbjct: 37 ESQIVKFDYPIKRALVANPDLANLKVL-NSKELLVSGKQAGKTELIIW 83
>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 571
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 30/102 (29%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK-------------------- 60
+T + + + + I VG+S +L+ ++++G+ +
Sbjct: 51 STTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRILLGNPENARAARPADTPEGKKEEGVK 110
Query: 61 ---------IVDV-LALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ DV + L V + GK +G+TN+++L +
Sbjct: 111 TPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTNVVMLDRDG 152
>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
Length = 473
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVITGKNLGSTN 84
S +R+ G ++ ++V VG+ ++ D L L+ TV++ + G T+
Sbjct: 50 DTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVARKPGVTD 109
Query: 85 IIVLGHN 91
+ + +
Sbjct: 110 LKIWSRD 116
>gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter
eiseniae EF01-2]
gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter
eiseniae EF01-2]
Length = 714
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
++ + I + VG+S + ++ VG+ K++ AL E+ V++ +G+++
Sbjct: 78 KQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAAL-DEREVIVFANEVGTSS 135
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
+ V + +I + S
Sbjct: 136 LFVWNEDGRY-QRVKINVVPGDTS 158
>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 416
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + S + I G ++ V ++ VGD KI DV + ++
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLL 82
Query: 76 TGKNLGSTNIIVLGH 90
TG G+T+++V
Sbjct: 83 TGVAQGTTSLMVWTA 97
>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 416
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + S + I G ++ V ++ VGD KI DV + ++
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLL 82
Query: 76 TGKNLGSTNIIVLGH 90
TG G+T+++V
Sbjct: 83 TGVAQGTTSLMVWTA 97
>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
Length = 458
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLP-KQVIVGDDKIVDVLALE----KEKTVVI 75
+ + I +AV L D ++ +GD ++ DV L + ++++
Sbjct: 27 AQTTAPGANAAARDIAVAVKGQQSLMLDGAAPSRIAIGDPEVADVKILPASGKRAGSLLL 86
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
GK G+T + + NN + + Q
Sbjct: 87 YGKKAGTTQLQIWTGNNPTPQIWNVRVAGSVQ 118
>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 416
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P + S + + I G + V ++ VGD KI DV + ++TG
Sbjct: 28 AAPGSCSTLAAMPAA--VEIDQGIQQNISSPVAITRIAVGDPKIADVH-VSGNDGFLLTG 84
Query: 78 KNLGSTNIIVLGH 90
G+T+++V
Sbjct: 85 VAQGTTSLMVWTA 97
>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae
Cit 7]
Length = 416
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae
pv. japonica str. M301072PT]
Length = 416
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 416
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae
pv. syringae B728a]
gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae
pv. syringae B728a]
Length = 416
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina
DSM 3645]
gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina
DSM 3645]
Length = 540
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL--GHNND 93
+ QS I++ +V + + +V+V + + G +G T + + +
Sbjct: 66 SLMTSQSKIVRTKSPVFRVAITNPAVVEVNEF-SPTEMEVIGSAVGQTTMTLWFNNADGT 124
Query: 94 ILLDTEIATFANEQS 108
+ + +N+ +
Sbjct: 125 VSTLRYLIIVSNDDN 139
>gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 585
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
++ + G+ A + + + ++ + V S +++F +++V + +V + +
Sbjct: 35 SQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVEFPFDVPKMLVNNPDLVRITPI- 93
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
++ ++ G T + V + D + ++ + Q
Sbjct: 94 SPNSIQLSAVKGGVTQLNVWNAD-DQVTTLDLIVIPDVQEL 133
>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
Length = 449
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIVL 88
+ + V L+ D P +V + D ++ DV L + V++ G+ G+T + V
Sbjct: 40 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99
Query: 89 GHNND 93
+
Sbjct: 100 SRGSR 104
>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
12822]
gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
parapertussis]
gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
Length = 448
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIVL 88
+ + V L+ D P +V + D ++ DV L + V++ G+ G+T + V
Sbjct: 39 RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98
Query: 89 GHNND 93
+
Sbjct: 99 SRGSR 103
>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 416
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae
pv. lachrymans str. M301315]
Length = 416
Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132]
gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio
desulfuricans ND132]
Length = 476
Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 19 IPTTASQKT-PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
T A + D + I + +G+S ++ D ++ +G D + ++ + + +T
Sbjct: 22 TATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVI-SPTQIYLTA 80
Query: 78 KNLGSTNIIVLGHNN-DILLDTEIATFA-----------NEQSTVRVYTPGTLSFLS 122
+GST + + + + D + +++ VRV T G LS
Sbjct: 81 NEIGSTTLTLWTGDRVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLS 137
>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 2250]
gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 416
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + ++TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLLTGVA 86
Query: 80 LGSTNIIVL 88
G+T+++V
Sbjct: 87 QGTTSLMVW 95
>gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 502
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + ++ + + G++ + + ++V VGD +I+ V + +V G G TN+
Sbjct: 86 TAQPLADALTLHAGEAAVRRVPAALRRVAVGDGEILSVHTV-GRNELVFIGTQPGETNVH 144
Query: 87 VLGHNNDILLDTEIATFANEQSTV 110
+ N + + V
Sbjct: 145 LWLGNGTQ-RTVAVNVTGSRSDGV 167
>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae
pv. mori str. 301020]
Length = 416
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ S + I G ++ V ++ VGD KI DV + + TG
Sbjct: 28 AASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVH-VNGTDGFLFTGVA 86
Query: 80 LGSTNIIVLGH 90
G+T+++V
Sbjct: 87 QGTTSLMVWTA 97
>gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 416
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + S + I G ++ V ++ VG KI DV + ++
Sbjct: 24 QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGAPKIADVH-VNGTDGFLL 82
Query: 76 TGKNLGSTNIIVLGH 90
TG G+T+++V
Sbjct: 83 TGVAQGTTSLMVWTA 97
>gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116]
gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116]
Length = 449
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I V ++ V V D +IVD E TVV+ K +G I+ G + +LL
Sbjct: 28 ITVSDGQHIEVKEPISTVFVSDPEIVDYNV-VNENTVVVFAKEVGQARFIIYGKSKKVLL 86
Query: 97 DTEIATFANEQSTVR 111
I + S VR
Sbjct: 87 SDRIIVDI-DLSLVR 100
>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae
pv. syringae 642]
Length = 416
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 43 VEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVAQGTTSLMVWTA 97
>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
S110]
gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
S110]
Length = 457
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 13/120 (10%)
Query: 19 IPTTASQKTP--EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE-----KEK 71
I T A+ TP + + G L + +++ + D+ + +
Sbjct: 36 IATNAADATPVRPQPQRPLILNAGTQQELLIEKGIERMAIADEAVAAITVTRKGPNSPAA 95
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ------STVRVYTPGTLSFLSCTP 125
++ITGK G T +++ N I +V + + ++ P
Sbjct: 96 RLIITGKAAGRTTLMIWEKGNSAATTYSIEVRRRSATLAGTMDSVAAHQQARETAMAGMP 155
>gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
Length = 467
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 34 RIRIAVGQS-----LILQFDVLPKQ--VIVGDDKIVDV-LALEKEKTVVITGKNLGSTNI 85
+ + G+S +L FD K+ V+VGD I D +++TGK G+T I
Sbjct: 206 EMELTYGESDTVSVTLLPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGTTTI 265
Query: 86 IVLGHNNDILLDTEI-----ATFANEQSTVRVYTPGTLSFLS 122
G + +D +I T STV V +
Sbjct: 266 TFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYT 307
>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 536
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK-NLGSTNIIV 87
+ RI IA S + + +V++ + + D L + I GK G T++ +
Sbjct: 82 ASKAGRIVIAPHMSFVKRTQRPITRVVLANPSLADAELLT-PTQLFIVGKVKQGVTSLTL 140
Query: 88 LGHNN 92
+N
Sbjct: 141 WHGDN 145
>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
xylosoxidans A8]
gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
[Achromobacter xylosoxidans A8]
Length = 453
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 33 NRIRIAV-GQSLILQFDVLPKQVIVGDDKIVDVLALEKEK----TVVITGKNLGSTNIIV 87
I +AV GQ ++ P ++ +GD + DV L +V++ GK G+T + +
Sbjct: 41 RDISMAVKGQQSLVLDGGAPARIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQI 100
Query: 88 LGHNNDILLDTEIATFANEQS 108
NN + + Q
Sbjct: 101 WTGNNAAPQIWNVRVGGSVQG 121
>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 416
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 20 PTTASQKTP-----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+A + + I G ++ V ++ VGD KI DV + +
Sbjct: 23 APSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVH-VNGSDGFL 81
Query: 75 ITGKNLGSTNIIVL 88
+TG G+T+++V
Sbjct: 82 LTGVAQGTTSLMVW 95
>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 384
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 9 RLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVH-VNGTDGFLLTGVAQGTTSLMVWTA 65
>gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619]
gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619]
Length = 419
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ I I G L+ + + VGD K+ DV ++ V++T G+T +++
Sbjct: 43 PSVIEIDQGLQQELRLPLAITRAAVGDPKVADVQP-SGDRAVLVTAVGQGNTTLMLWTA 100
>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 428
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ + + + G L F +V VGD + D+ + + +++TG
Sbjct: 32 NVAQAGCDRVNSVLPHVKHLDAGVHKRLTFPTRVTRVAVGDPDVADLEIIGD-RELLLTG 90
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
+ G T++ V ND T + A E V
Sbjct: 91 VDGGLTSVYVWTTCNDRPDRTLVIVSAREALQVHEAEGSRDQV 133
>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato Max13]
gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato K40]
gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
Length = 419
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 43 MEIDQGIQQNVRSSVAITRIAVGDPKIADVH-VNGNDGFLLTGVAQGTTSLMVW 95
>gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae
pv. pisi str. 1704B]
Length = 134
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 2 AERPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVH-VNGTDGFLLTGVAQGTTSLMVW 60
Query: 89 GH 90
Sbjct: 61 TA 62
>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 564
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
TP ++ + + G+ ++ K++ +GD +V + + +++ + G T+
Sbjct: 42 NATPAQHA-LLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVV--DGRLMLLAEKAGVTS 98
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
++ N L +TVRV +
Sbjct: 99 LVAWTANGIAL-----------NTTVRVAKGNVRETAA 125
>gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
33641]
gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
33641]
Length = 415
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
N+ + ++ G+S I+ V V I D + + ++++ KN G
Sbjct: 4 AQGANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELI-GKNSIIVYAKNEGVAEFT 62
Query: 87 VLGHNNDILLDTEIAT 102
+ H++ + + +
Sbjct: 63 LFNHDHKAITKSVVLV 78
>gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 772
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 6 QREIKNETVRKKGIPTTASQKTP-----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
QR + TV+ TA Q + + + +S ++ + + D
Sbjct: 141 QRAVPVRTVQDSNQSDTARQLHRLIESMPSSEEDLEVIHRRSQLIVTRANVIRAAIADPN 200
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVL 88
++DV+ + + I G + G+T + +
Sbjct: 201 VIDVVQ-YGPREISIIGVSRGTTTLTLW 227
>gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium
HdN1]
gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium
HdN1]
Length = 470
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A++ P + I I GQ+ +L F +V +G++ + + +++TG G
Sbjct: 52 AAEPVPPGYDDVISIVQGQTTLLPFP-NVVRVSIGEENLANAQP-AGANEILLTGLKAGV 109
Query: 83 TNIIVLGHNND 93
T++ + +
Sbjct: 110 TDLRIWPEHGK 120
>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 419
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 43 MEIDQGIQQNVRSSVAITRIAVGDPKIADVH-VNGSDGFLLTGVAQGTTSLMVW 95
>gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 493
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFD-VLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+Q+ ++ + +G + + D +V VG+D I++ + + +++ + G G
Sbjct: 18 AQQGKNVPEKKVEVVLGIDHVEKLDFAPSTKVQVGNDTILNHVIIPQKREITFKGLKPGQ 77
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTV 110
T+++V DI + A +QS V
Sbjct: 78 TSVMVRNTVGDIKAKFLVNITATDQSKV 105
>gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 416
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 20 PTTASQKTP-----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+A + + I G ++ V ++ VGD KI DV + +
Sbjct: 23 APSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVH-VNGIDGFL 81
Query: 75 ITGKNLGSTNIIVL 88
+TG G+T+++V
Sbjct: 82 LTGVAQGTTSLMVW 95
>gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC
[Planctomyces maris DSM 8797]
gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC
[Planctomyces maris DSM 8797]
Length = 590
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQ--SLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
P AS+ + +S ++++ V + S IL+F K+V D ++ V AL + I
Sbjct: 37 PPGASEPVVQVSSEKMKLEVTEKFSKILKFPGKIKRVDGFDPTVLSVSALT-PNELRIQA 95
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
G T +++ N + E + +
Sbjct: 96 LVPGVTTLVITDENGKV-YTLETFVSGDARHL 126
>gi|218513620|ref|ZP_03510460.1| pilus subunit transmembrane protein [Rhizobium etli 8C-3]
Length = 44
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 98 TEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
I +E +TVRVY S LSCTP C +
Sbjct: 1 ERILVSIDEGNTVRVYRQTERSVLSCTPNCEQHA 34
>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
Length = 310
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
I I G L+ V ++V VG+ K+ DV A E+ VVIT G+T++++
Sbjct: 39 IEIDQGLQQELRLPVAIERVAVGEPKVADVQA-SGERGVVITAVGQGNTSLMMWTA 93
>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 451
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
N+ + + G+ +L K++ +G+ K++ + + V++ ++ G T
Sbjct: 39 VDADAAQNAAVLDLYKGEVRMLNVPGTIKRIAIGNGKLLTANVV--DGRVMLLAESAGIT 96
Query: 84 NIIVLGHNNDILLDTEIATFANEQS 108
+++V + L T + +
Sbjct: 97 SLVVWNERG-VALQTTVRVAKGDVG 120
>gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4]
gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4]
Length = 436
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
N+ +++ VG + + ++++VG+ K++ + K V++ G+ G+T++ +
Sbjct: 22 AHNNRPMKLYVGAVELYK-AANVERIVVGNGKVLSAKVV-DNKGVLLIGEAPGNTDLQLW 79
Query: 89 GHNNDILLDTEIATFANEQ 107
+ ++ + +
Sbjct: 80 QKDGKLI-KLSLTVTPDNS 97
>gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 410
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
+++ V V I D + + ++++ K G+ I+ N+ + + I
Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELV-GKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILV- 58
Query: 104 ANEQSTVR 111
+T+
Sbjct: 59 ---DNTIT 63
>gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 410
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
+++ V V I D + + ++++ K G+ I+ N+ + + I
Sbjct: 1 MIKTQEEIDTVFVSAAAIADYELV-GKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILV- 58
Query: 104 ANEQSTVR 111
+T+
Sbjct: 59 ---DNTIT 63
>gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae FF5]
Length = 133
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ I G ++ V ++ VGD KI DV + ++TG G+T+++V
Sbjct: 11 VEIDQGIQQEVRSVVPITRIAVGDPKIADVH-VNGTDGFLLTGVAQGTTSLMVWTACASA 69
Query: 95 LLDTEIATFANEQST 109
+ + +T
Sbjct: 70 PRQSMVFVRGRATTT 84
>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus
caldus ATCC 51756]
gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus
caldus ATCC 51756]
Length = 502
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + I + GQ ++ K+V +GD K++ + +++ G
Sbjct: 12 VAIAMAIPAQAAEDRTIDLYAGQVRVIPT-KPVKRVAIGDGKVLS-TTVVDGNELLLLGD 69
Query: 79 NLGSTNIIVLGHNNDI 94
G T++ V +
Sbjct: 70 AEGETSLRVWFKDGSE 85
>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 597
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+ ++ ++ + + G+ IL+ K++ +G+ K++ ++ ++
Sbjct: 31 ALAQGASASATDDASATTHVLEMFRGEVRILRLPGTIKRIAIGNGKLITANVVDGN--LM 88
Query: 75 ITGKNLGSTNIIVLGHNN 92
+ G+ G T+++V
Sbjct: 89 LLGEQDGMTSLVVWNEKG 106
>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
Length = 508
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 19 IPTTASQKTPE--DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+PT + + + I++ +GQ +L F +V VG+ K+++ +K +V+
Sbjct: 18 VPTIYQEAYAQTTNTPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATT-SDDKELVLF 75
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
G + G T + V + + Q+
Sbjct: 76 GLSEGFTTLQVWDKGGSS-SSYRVVIESANQN 106
>gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
Length = 454
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ + ++ T S+ + I++ +G L +++ +GDD I V
Sbjct: 29 VTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDDTIAAVHIKR 88
Query: 69 KEK----TVVITGKNLGSTNIIVL 88
K ++++ GST+ +V
Sbjct: 89 AGKGAAAKILLSPLKPGSTSFMVW 112
>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
Length = 478
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 21 TTASQKTPEDNS-------NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
TTA++ + S I + G+ L+ ++V +G+ +V + + +
Sbjct: 24 TTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVV--DGRL 81
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
++ + +G+T++IV + L ++ + + V
Sbjct: 82 LLLAEEIGTTSLIVWNERG-VALQGKLRVAPADTADV 117
>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
Length = 595
Score = 42.3 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+P ++ + + G+ IL K++ +G+ K++ + + ++++ G+ G T+++
Sbjct: 49 SPSASTRVLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVV--DGSLMLLGEQDGITSLV 106
Query: 87 VLGHNN 92
V
Sbjct: 107 VWNDKG 112
>gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
Length = 507
Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQ--VIVGDDKIVDVLALEKEK-TVVITGK 78
T + + + + +G S +++ ++ +++ + I+ L V GK
Sbjct: 23 TGTAAADDIEHLTLDVNIGGSELVEIREPSQRMKILISNGDIIGARPLRPNLINVYNLGK 82
Query: 79 NLGSTNIIVLGHNNDIL-LDTEIAT 102
+G + + V + +++
Sbjct: 83 KIGFSRVTVWDDAARQVRAIIDVSV 107
>gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus
neapolitanus c2]
gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus
neapolitanus c2]
Length = 443
Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + GQ+L+ +V VG+ K+V+V L + +VI G T++
Sbjct: 28 ADAPALPDAVTMYAGQALVRSAPGSLLRVAVGNGKLVEVRVL-GRRQMVIIANQAGDTSL 86
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ + N +
Sbjct: 87 QLWMRDGSRRSIDLHIVSGNTDQVAELVR 115
>gi|229084241|ref|ZP_04216524.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44]
gi|228699041|gb|EEL51743.1| hypothetical protein bcere0022_8840 [Bacillus cereus Rock3-44]
Length = 852
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 57 GDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ I DV + + V + GK +G T I + + + + EI + T
Sbjct: 303 SNKDIADVETI--DGKVKVIGKGIGKTTIQAISEDGKKVTNAEITVTNSLDVT 353
>gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC
51599]
Length = 434
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
NE + +S T D I +++GQ +++ ++ +G +++ L +
Sbjct: 6 NEVGAAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWL-DD 63
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
+ +++ + G T + + + +I E ++VR+
Sbjct: 64 RQLLLIPEAPGETTLHLWLKGGG-IRKYQILVT--ESNSVRL 102
>gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS]
Length = 462
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 20 PTTASQKTPEDNSNRIRIAVG--QSLILQFDVLPKQVIVGDDKIVDVLALEKE-----KT 72
+ A+ TP ++I + VG L ++ + D+ + V K
Sbjct: 42 ASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKTPNSPAAR 101
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFA 104
++ITGK G T ++V + +
Sbjct: 102 LIITGKTAGRTTLMVWEKGSASATTYALEVRR 133
>gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni
S44]
gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni
S44]
Length = 454
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK----TVVITGKN 79
S+ + I++ +G L +++ +GDD I V K ++++
Sbjct: 44 SRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLK 103
Query: 80 LGSTNIIVL 88
GST+ +V
Sbjct: 104 PGSTSFMVW 112
>gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
Length = 1618
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFD-------VLPKQVIVGDDKIVDVLA--LEKEK 71
T A +TP ++N + + G + + V + I V +
Sbjct: 980 TVAEPRTPSVSANTLTVNKGATASFTVSLGQGVSAATAADITVANGSIASVSTGRVTASG 1039
Query: 72 TVVITGKNLGSTNIIV-LGHNNDILLDTEIATFANEQS 108
TV +TG G+T IIV + + + + A
Sbjct: 1040 TVTVTGLAAGTTGIIVTFHDSAQTVKNIAVTVNAVSDR 1077
>gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 412
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
P + V + +L + +V V + ++ V A +++ +T G +
Sbjct: 40 ALPFAAGAETGLRVKEQRMLSYPRAIGRVEVDREGVLSVAA-PSPRSLRLTAIGAGEATV 98
Query: 86 IVLGHNNDILLDTEIATFANEQSTVR 111
V G + ++ + + VR
Sbjct: 99 SVFGGDGGLIGREAVRVAPADAPVVR 124
>gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53]
gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris
BisA53]
Length = 268
Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 46 QFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
Q + V K + L ++ + + G+ ++ + ++D+ +
Sbjct: 189 QLPKEREGQNVAVGKTATLELLPEQAEQLARARQSGTLSLAL-----RSMVDSNVVATVT 243
Query: 106 EQSTVRVYTPGTLSFLSCTPRCL 128
+ V +Y SCTP C
Sbjct: 244 DDKQVTIYKGSEKEQYSCTPLCE 266
>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 561
Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ +A+ +P ++ + + G+ IL K++ +G+ K+V + + ++
Sbjct: 30 AALAQVGYSAAMASPSASTRVLEMFRGEVRILHVPGTIKRIAIGNGKLVTANVV--DGSL 87
Query: 74 VITGKNLGSTNIIVLGHNN 92
++ G+ G T+++V
Sbjct: 88 MLLGERDGITSLVVWNEKG 106
>gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009]
gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris
CGA009]
Length = 270
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 52 KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS--T 109
+ V+VG K + + V+ + G+ ++ + + D I A++Q
Sbjct: 197 QNVVVG--KTATLELTGDQAEVLTRARQSGTLSLAL-----RSIADARIVAEASDQGDKQ 249
Query: 110 VRVYTPGTLSFLSCTPRCL 128
+ VY SC P C
Sbjct: 250 ITVYRGTDKELYSCAPLCE 268
>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 416
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
I ++V ++ L +PK ++VG DK+VDV L + + G T +IV
Sbjct: 31 AQADTFINMSVNETKHLPLSYVPKDIVVGSDKVVDVN-LADSNNLYLIAHEAGKTKVIVK 89
Query: 89 GHNNDILLDTEIATFANEQST 109
G + I ++ T
Sbjct: 90 GEEETT--EYVIQVRDTDKDT 108
>gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 607
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVL---PKQVIVGDDKIVDVLALE 68
++ ++ P T + TPE R + VG++ + +V + + +I+
Sbjct: 14 KSEKEVEAPPTQLKFTPE----RTEVEVGKTATVTIVGTWNKTDKVQIANKEIITQQGEV 69
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
+ + + K +G+T + VL + + E+ +
Sbjct: 70 TDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTPTSE 108
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 36 RIAVGQSLILQFDVL---PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ +G++ + +V + D +IV + + + K +G+T + VL +
Sbjct: 117 EVEIGKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSVLTADG 176
Query: 93 DILLDTEIATF 103
EI
Sbjct: 177 RNRGSFEITVT 187
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 31 NSNRIRIAVGQSLILQFDV---LPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + I G++ I+ +V + D ++ + + + + K +G+T + V
Sbjct: 278 SPESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEV 337
Query: 88 LGHNNDILLDTEIATF 103
E+
Sbjct: 338 FTKEGQSRGSFEVTVT 353
>gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
Length = 270
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 52 KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS--T 109
+ V+VG K + + V+ + G+ ++ + + D + A++Q
Sbjct: 197 QNVVVG--KTATLELTGDQAEVLTRARQSGTLSLAL-----RSIADARVVAEASDQGDKQ 249
Query: 110 VRVYTPGTLSFLSCTPRCL 128
+ VY SC P C
Sbjct: 250 ITVYRGTDKELYSCAPLCE 268
>gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus
DSM 3776]
Length = 622
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSN-RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ G A + S ++ IA + ++QF +V D ++ V AL
Sbjct: 34 SGMAFAQNGNAPVAGEVVQITASRTKLEIAERFARVVQFPRKILRVDGFDPAVLSVTALA 93
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
++ + + G G T +++ N + ++ + +
Sbjct: 94 HDQ-LRVQGITEGITTMVITDENGA-ITTIDVMVAGDAR 130
>gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP
102972]
gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP
102972]
Length = 387
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 30 DNSNRIRIAVGQSLILQF-DVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I ++ L + +V V D + + L + T++I N GST+++V
Sbjct: 21 HAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVL-NKNTLLINSHNGGSTSLLVW 79
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGT 117
N+ ++ + ST V
Sbjct: 80 LKNSPSPKAYQLHVVPSLVSTTNVQVQTD 108
>gi|317418665|emb|CBN80703.1| Plexin-A2 [Dicentrarchus labrax]
Length = 1888
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ ++ P ++ ++V ++ + + D + + L
Sbjct: 1001 APSVTRAGPV----QVSLSVDRAKV---PGSLAFEYIEDPTVQRIEPLWS--------IT 1045
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
G T + V G N D++ + + +V V + +SC
Sbjct: 1046 SGHTTMTVTGTNLDVVQEPRVRVKYGGHESVNVCKVLNTTTISC 1089
>gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni
S44]
gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni
S44]
Length = 520
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVG--DDKIVDV---------------- 64
A T + + +G+S+++ + +++V +
Sbjct: 37 ARNCTAIHTEDPTTVTLGKSVVIPLNSPMARILVSGQTPGVGQAAANGQPQMQVQNGMGD 96
Query: 65 --LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
+ L + + G+ GS N+I+ + I T
Sbjct: 97 IEVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIKDVIVTMDPG 140
>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 590
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + G+ IL K++ +G+ K++ + + ++++ G+ G T+++V
Sbjct: 42 SAGTRVLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVV--DGSLMLLGEQDGITSLVVW 99
Query: 89 GHNN 92
Sbjct: 100 NDKG 103
>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 642
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + S + + G+ IL K++ +G+ K++ ++ +++ G+ G
Sbjct: 38 SPAADDASAASRVLEMFRGEVRILHVPGTIKRIAIGNGKLITANVVDGN--LMLLGEQDG 95
Query: 82 STNIIVLGHNN 92
T+++V
Sbjct: 96 MTSLVVWNEKG 106
>gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 520
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVG-------------------DDKIVD 63
A T + + +G+S+++ + +++V + + D
Sbjct: 39 ARNCTAIHTEDPTTVTLGKSVVIPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGD 98
Query: 64 V-LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
+ + L + + G+ GS N+I+ + I T
Sbjct: 99 IEVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIKDVIVTMDPG 142
>gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni
CNB-2]
Length = 523
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 22/106 (20%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVG---------------------DDKI 61
A T + + +G+S+++ +++V + +
Sbjct: 38 ARNCTAIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGM 97
Query: 62 VDV-LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
D+ + L + + G+ GS N+I+ + I T
Sbjct: 98 GDIEVQLLSPRDLFFRGRKSGSMNVILQNAQGACFIKDVIVTMDPG 143
>gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1]
gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica
SH 1]
Length = 704
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIV--DVLALEKEKTVVITGKNLGSTNIIVL---- 88
+ + +G+ IL+ P ++ V D+ + +++ E + + +TG G+T +++
Sbjct: 142 LSLVLGRPKILRLADTPTRIYVPDEDTIRTEIIDQESGRELAVTGVQPGTTTLMLWFKDS 201
Query: 89 -GHNNDILLDTEIATFAN 105
+ ++ + + +
Sbjct: 202 GAPSGQSVVSYLVRVYED 219
>gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula
baltica WH47]
Length = 758
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIV--DVLALEKEKTVVITGKNLGSTNIIVL---- 88
+ + +G+ IL+ P ++ V D+ + +++ E + + +TG G+T +++
Sbjct: 196 LSLVLGRPKILRLADTPTRIYVPDEDTIRTEIIDQESGRELAVTGVQPGTTTLMLWFKDS 255
Query: 89 -GHNNDILLDTEIATFAN 105
+ ++ + + +
Sbjct: 256 GAPSGQSVVSYLVRVYED 273
>gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
Length = 478
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+ T ++ ++ I + VG L +++ VG+ +V+V + ++ V
Sbjct: 391 FQSDAATPRAESLGRMAASLIVLRVGDVHELAVPG-LQRIAVGEPSLVEV-TVPRQGVVR 448
Query: 75 ITGKNLGSTNIIVLGHNNDI 94
+ GK GST++I H ++
Sbjct: 449 LKGKEEGSTDLITWSHAGEM 468
>gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1]
gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 249
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA 101
V V D I L +++TGK GST +++ + +A
Sbjct: 53 VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVA 100
>gi|225574843|ref|ZP_03783453.1| hypothetical protein RUMHYD_02921 [Blautia hydrogenotrophica DSM
10507]
gi|225037917|gb|EEG48163.1| hypothetical protein RUMHYD_02921 [Blautia hydrogenotrophica DSM
10507]
Length = 293
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P N+ R + V Q++ L+ + K+V + V + K+ TV GK
Sbjct: 25 PQKVEAAKIGLNAKRATVYVDQTVTLKMEGTKKKVSYSSEDTS-VATVSKKGTVY--GKK 81
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
G T + + ++ + T
Sbjct: 82 PGKTTVTA--KVGNQEYSCKVTVVKVTEKT 109
>gi|307566077|ref|ZP_07628535.1| putative lipoprotein [Prevotella amnii CRIS 21A-A]
gi|307345265|gb|EFN90644.1| putative lipoprotein [Prevotella amnii CRIS 21A-A]
Length = 256
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 43 LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
+ ++ P + V D ++ LE +K+ +TG G T IIV N +
Sbjct: 111 VTIENGEAPYDINVVDKEVAQTKLLEDKKSFAVTGLKDGKTEIIVTDKNKSE-ARVTVVV 169
>gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
Length = 245
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFD-------VLPKQVIVGDDKIVDV 64
E+ + +P T T S + VGQ+ ++ V D + +
Sbjct: 151 ESNQAAAVPVTGVTVTQSTTS----VVVGQNAVITVAVLPDGATNGAFNVAAADPTVATL 206
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
TV G G+T +IV+ ++ + + A
Sbjct: 207 TV--SGNTVTAKGLKAGTTQLIVMTNDGQKVAICTLTVTAA 245
>gi|255008103|ref|ZP_05280229.1| hypothetical protein Bfra3_03120 [Bacteroides fragilis 3_1_12]
Length = 360
Score = 37.3 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 36 RIAVGQSLILQFDV-LPKQVIVGDDKIVDVLALEKEKT----VVITGKNLGSTNIIVLGH 90
+I +G S ++ + + D ++ D + T + ITGK G T+IIV H
Sbjct: 41 KIILGGSESVKLTAHENTTLDITDGEVADAVYTWGGNTEASDIKITGKRDGETDIIVTDH 100
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
++ + + +
Sbjct: 101 ETGETATIKVEVTKAPMPHLALKKGNRKNVFD 132
>gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica
DSM 16294]
Length = 565
Score = 36.9 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL----EKEKTVVITGKNLGSTNIIV 87
+N I + + +L K++I+G+ + ++V L K + I GK G+T+I+V
Sbjct: 16 ANDILVFNNEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILV 75
Query: 88 LGHNNDILLDTEIATFAN 105
+ +N + + + N
Sbjct: 76 IYTDNS-IQNYHVYVNEN 92
>gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
33624]
gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
33624]
Length = 386
Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 20 PTTASQKTPEDNSNRI-------RIAVGQSLILQFDVL---PKQVIVGDDKIVDVLALEK 69
PT S + ++ + + V ++ + +V + ++++ + +
Sbjct: 39 PTNPSNPSNPPVASSLKFTPENPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQ 98
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
+ + + GK G+T + +L +N E+
Sbjct: 99 DNKLTVLGKKAGTTKVHILSADNKERGSFELTVS 132
>gi|255012185|ref|ZP_05284311.1| TraN-like protein [Bacteroides fragilis 3_1_12]
gi|313150028|ref|ZP_07812221.1| predicted protein [Bacteroides fragilis 3_1_12]
gi|313138795|gb|EFR56155.1| predicted protein [Bacteroides fragilis 3_1_12]
Length = 360
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK-EKTVVITGKNL- 80
++Q+ E +S I ++ ++ + + G + V V ++ V IT +
Sbjct: 18 SAQEKKELDSQTIYVSFDKTKHIVLPAQVSDISYGREDYVKVERVDNVPNVVRITAQEED 77
Query: 81 --GSTNIIVLGHNNDI 94
G+TN+I++ N ++
Sbjct: 78 FSGTTNLIIVCTNGNV 93
>gi|183986715|ref|NP_001116947.1| plexin A2 [Xenopus (Silurana) tropicalis]
gi|171846959|gb|AAI61575.1| plxna2 protein [Xenopus (Silurana) tropicalis]
Length = 1898
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + + + D K++ + G T++ V+G N DI
Sbjct: 1024 VSVSVDRAQ---LESNLQFEYIDDPKVLRIEPEWS--------IASGHTSLTVIGTNLDI 1072
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ I +N + +V V + L+C
Sbjct: 1073 IQQPRIRVKSNGKESVNVCKVVNATCLTC 1101
>gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis
DSM 5305]
Length = 714
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 20 PTTASQKTPE-----------DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
P++AS +T +N++ + S +L+ + +V D ++ V AL
Sbjct: 46 PSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRVLELEKRITRVDGFDPAVLTVSALT 105
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
V I + G T ++++ + E+ +
Sbjct: 106 -PHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140
>gi|158298151|ref|XP_318358.4| AGAP004670-PA [Anopheles gambiae str. PEST]
gi|157014468|gb|EAA13567.5| AGAP004670-PA [Anopheles gambiae str. PEST]
Length = 1375
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVI-VGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ +S R+ + + L+ L + ++ V D KI + + + G+ +G T++
Sbjct: 624 AVDQDSGRVSYLISRRTGLRVTDLVQSLLRVADPKIATL------RGRTLQGRAMGRTDV 677
Query: 86 IVLGH-NNDILLDTEIATFANEQSTVRVYT 114
VL N ++ E+ +++ V +
Sbjct: 678 QVLSPINGRVIGAREVRVGSDK---VTITR 704
>gi|332247801|ref|XP_003273050.1| PREDICTED: plexin-A2 isoform 2 [Nomascus leucogenys]
Length = 1910
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1036 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1084
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1085 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1113
>gi|332247799|ref|XP_003273049.1| PREDICTED: plexin-A2 isoform 1 [Nomascus leucogenys]
Length = 1909
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|297662112|ref|XP_002809562.1| PREDICTED: plexin-A2-like [Pongo abelii]
Length = 1909
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|297280884|ref|XP_001110951.2| PREDICTED: plexin-A2-like isoform 2 [Macaca mulatta]
Length = 1909
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|331284187|ref|NP_001193586.1| plexin A2 [Bos taurus]
Length = 1894
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1020 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1068
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1069 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1097
>gi|149708603|ref|XP_001491498.1| PREDICTED: plexin A2 [Equus caballus]
Length = 1894
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1020 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1068
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1069 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1097
>gi|126306990|ref|XP_001373478.1| PREDICTED: similar to plexin A2 [Monodelphis domestica]
Length = 1200
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P +A P + ++V ++ + D + + D ++ +
Sbjct: 315 PPSARGLGPVP----VSVSVDRAHV---DSSLQFEYIDDPRVQRIEPEWS--------IA 359
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC-TPRCLPSSPP 133
G T + + G N D++ + I N + +V V + L+C P P P
Sbjct: 360 SGHTPLTITGFNLDVIQEPRIRVKFNGKESVNVCKVVNTTTLTCLAPSLTPEYRP 414
>gi|312019782|emb|CBH95064.1| major tail protein V [Enterobacteria phage phi80]
Length = 247
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ + + + V + K V T+ +TG G+
Sbjct: 170 ATASVAVGATTTLNVTVNPA-----SASDKSFRVSSADRAKATVTANGNTLTVTGVAAGT 224
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
+IIV+ + + + ++ A
Sbjct: 225 ADIIVMTSDGNFVAVCKVTVTAA 247
>gi|237712601|ref|ZP_04543082.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229453922|gb|EEO59643.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 1134
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 33 NRIRIAVGQSLILQ-FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + V + I + D + K + + + L K + G N V
Sbjct: 88 RLVSVTVTKETIFKVLDKIFKDTGISYSILDKSIILSNRKENINVGLENKKINGTVFDAK 147
Query: 92 NDILLDTEIATFANEQSTVR 111
+ ++ + + T+
Sbjct: 148 GEPIIGANVRVKGSTLGTIT 167
>gi|327279827|ref|XP_003224657.1| PREDICTED: plexin-A2-like [Anolis carolinensis]
Length = 1965
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + + + + D K+ + G T + V G N D+
Sbjct: 1091 VSVSVDRA---HLESMLQFEYIDDPKVQRIEPEWS--------IASGHTPLTVTGSNLDV 1139
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC-TPRCLPSSPP 133
+ + I N + +V V + L+C P P P
Sbjct: 1140 IQEPRIRVKYNGKESVNVCKVVNATTLTCLAPSLTPEYRP 1179
>gi|301781766|ref|XP_002926299.1| PREDICTED: plexin-A2-like [Ailuropoda melanoleuca]
Length = 1894
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1020 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1068
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + + N + +V V + L+C
Sbjct: 1069 IQEPRVRVKFNGKESVNVCKVVNTTTLTC 1097
>gi|281346024|gb|EFB21608.1| hypothetical protein PANDA_015932 [Ailuropoda melanoleuca]
Length = 1907
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1033 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1081
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + + N + +V V + L+C
Sbjct: 1082 IQEPRVRVKFNGKESVNVCKVVNTTTLTC 1110
>gi|73960731|ref|XP_547389.2| PREDICTED: similar to plexin A2 [Canis familiaris]
Length = 1909
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRARV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + + N + +V V + L+C
Sbjct: 1084 IQEPRVRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|296230646|ref|XP_002807776.1| PREDICTED: LOW QUALITY PROTEIN: plexin-A2-like, partial [Callithrix
jacchus]
Length = 1924
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1050 VSVSVDRARV---DNSLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1098
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1099 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1127
>gi|3482875|gb|AAC33163.1| aggregation factor protein 3, form D [Microciona prolifera]
Length = 1568
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 51 PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN--NDILLDTEIATFANEQS 108
V + DD I + + + + GST+I+ L + N +LD ++ EQ+
Sbjct: 750 AVNVTILDDDIAENIEMFSANLRL----PAGSTDIVFLDPDRANATILDNDVPVIGFEQT 805
Query: 109 TVRVYTPGTLSFLSCTPRCLPSS 131
V T C P++
Sbjct: 806 QYSVVEGDTTPTEICVALMPPTT 828
>gi|332881923|ref|ZP_08449565.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680158|gb|EGJ53113.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 157
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 53 QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
V + + I ++ E + +TG +G+T I+V + + + A +Q
Sbjct: 85 SVSILNKNIATIVLKENNAAIYVTGVEVGTTTIVVTDNYTKQTKEIGVKVTAAKQ 139
>gi|326679237|ref|XP_689780.4| PREDICTED: plexin-A2 [Danio rerio]
Length = 1909
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+I ++V ++ + + D + + G T ++V G N D
Sbjct: 1034 QISVSVDRAQVRDI---LAFEYIDDPTVQRIEPEWS--------IASGHTPLVVTGTNLD 1082
Query: 94 ILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
++ + I + +V V + +SC
Sbjct: 1083 VIQEPRIRIKYGGRESVNVCKVLNTTTMSC 1112
>gi|222094636|ref|YP_002528696.1| s-layer protein ea1 [Bacillus cereus Q1]
gi|221238694|gb|ACM11404.1| s-layer protein ea1 [Bacillus cereus Q1]
Length = 889
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 53 QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
V VG+ +I V + KT+++ G+ G T++I L + I V
Sbjct: 669 DVRVGNSEIATVEFGKDGKTLLVKGEKAGVTDVI-LTKDGATAGHATITVTQENIKITSV 727
>gi|332811804|ref|XP_003308771.1| PREDICTED: LOW QUALITY PROTEIN: plexin-A2-like [Pan troglodytes]
Length = 1909
Score = 34.6 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRAHV---DNNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|167628269|ref|YP_001678768.1| multidomain protein with s-layer homology region, glug motif, ig
motif, i-set domain [Heliobacterium modesticaldum Ice1]
gi|167591009|gb|ABZ82757.1| multidomain protein with s-layer homology region, glug motif, ig
motif, i-set domain [Heliobacterium modesticaldum Ice1]
Length = 2976
Score = 34.6 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQ---------VIVGDDKIVDVLALE 68
P + S T ++ + G + + + IV A
Sbjct: 1639 ADPPSNSPPTAKNPVPTQSVTAGGTATFTASDIAEDTDNDPLTITAIVTGPDTAKATASL 1698
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
TV +TG G T+++V ++ D +
Sbjct: 1699 NSGTVTLTGVAAGDTSVVVTVYDGTDTADVTVPVS 1733
>gi|187952395|gb|AAI36531.1| Plexin A2 [Homo sapiens]
Length = 1894
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1020 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1068
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1069 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1097
>gi|119613863|gb|EAW93457.1| plexin A2 [Homo sapiens]
Length = 1909
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|168267376|dbj|BAG09744.1| plexin-A2 precursor [synthetic construct]
Length = 1909
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1035 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1083
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1084 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1112
>gi|113722116|ref|NP_079455.3| plexin-A2 precursor [Homo sapiens]
gi|251757502|sp|O75051|PLXA2_HUMAN RecName: Full=Plexin-A2; AltName: Full=Semaphorin receptor OCT;
Flags: Precursor
gi|57162384|emb|CAI40198.1| plexin A2 [Homo sapiens]
gi|57162447|emb|CAI39808.1| plexin A2 [Homo sapiens]
gi|161899639|gb|AAI32677.2| Plexin A2 [Homo sapiens]
Length = 1894
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1020 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1068
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1069 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1097
>gi|3413888|dbj|BAA32308.1| KIAA0463 protein [Homo sapiens]
Length = 1963
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 1089 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 1137
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 1138 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 1166
>gi|167628276|ref|YP_001678775.1| multidomain protein with s-layer homology region, ig motif, i-set
domain, pkd domain [Heliobacterium modesticaldum Ice1]
gi|167591016|gb|ABZ82764.1| multidomain protein with s-layer homology region, ig motif, i-set
domain, pkd domain [Heliobacterium modesticaldum Ice1]
Length = 2124
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
N K +PT + + N IA + D L IV A
Sbjct: 180 NNPPAAKDPVPTQSVTEGSTAAFNAADIAED----VDNDPLTITAIVTGPDSAKATASLD 235
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
TV +TG +GST+++V + D +
Sbjct: 236 SGTVTLTGVAVGSTSLVVTVSDGTDTADVTVPVS 269
>gi|6010215|emb|CAB57275.1| OCT/plexin-A2 protein [Homo sapiens]
Length = 1328
Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ ++V ++ + D + + D ++ + G T + + G N D+
Sbjct: 574 VSVSVDRAHV---DSNLQFEYIDDPRVQRIEPEWS--------IASGHTPLTITGFNLDV 622
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSC 123
+ + I N + +V V + L+C
Sbjct: 623 IQEPRIRVKFNGKESVNVCKVVNTTTLTC 651
>gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
Length = 272
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 25 QKTPEDNSNRI---RIAVGQSLILQFDVLP-----KQVIVGDDKIVDVLALEKEKTVVIT 76
Q+ P+ N + I + +L D ++V+VG K + + ++
Sbjct: 158 QRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVG--KTATLELKPAQAEMLTR 215
Query: 77 GKNLGSTNI---IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ G+ + ++ N ++ A ++ + VY +CT C
Sbjct: 216 SRQSGTLTLALRSLVDANKQNEVE-----EATDEKVITVYRGVDREIYNCTSSC 264
>gi|325919683|ref|ZP_08181686.1| outer membrane autotransporter barrel domain-containing protein
[Xanthomonas gardneri ATCC 19865]
gi|325549846|gb|EGD20697.1| outer membrane autotransporter barrel domain-containing protein
[Xanthomonas gardneri ATCC 19865]
Length = 1227
Score = 34.2 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT----VVITGKNLGS 82
+ + +R+ G L + ++VGD I ++ + ++ G GS
Sbjct: 117 STAAGNGTLRLT-GPGARLAINSGFWDLLVGDAGIGNMTLQGGSQATTAGLMTLGNQQGS 175
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
T +++ L I T+ + GT++
Sbjct: 176 TGNVLVTGAGSALTARNIRVGRGGTGTMEITNGGTVTT 213
>gi|304404634|ref|ZP_07386295.1| Mannan endo-1,4-beta-mannosidase [Paenibacillus curdlanolyticus
YK9]
gi|304346441|gb|EFM12274.1| Mannan endo-1,4-beta-mannosidase [Paenibacillus curdlanolyticus
YK9]
Length = 853
Score = 33.9 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 7 REIKNETVRKKGIPTTAS--QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
++ N T P +AS +KT + + + + + + ++ G D V
Sbjct: 510 LKVNNPTQNASITPKSASFDKKTANQSDITVTMTLNGNTLSGIKNGSTSLVSGTDYTVSG 569
Query: 65 LALEKEKTVVITGKNLGSTNIIV-LGHNNDILLDTEIA---TFANEQSTVRVYTPGTLSF 120
+ K +T + LG+TN+ D LL I TV +
Sbjct: 570 TTV-NIKKSYLTAQALGTTNLTFDFSAGIDPLLAVSIVDTTVNLPGALTVSGTAGNAQTT 628
Query: 121 LSCTPRCLPSS 131
L+ T +S
Sbjct: 629 LTWTASTSATS 639
>gi|326429502|gb|EGD75072.1| notch [Salpingoeca sp. ATCC 50818]
Length = 2986
Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
V + +V V + +TG G +++ D+L I + S + V
Sbjct: 500 VTNPNVVRV----DRERFTLTGTAPGQATLVLQNTFGDLLATVSIEVSTAQVSALSV 552
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.136 0.352
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 815,030,515
Number of Sequences: 14124377
Number of extensions: 20455629
Number of successful extensions: 82057
Number of sequences better than 10.0: 733
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 80901
Number of HSP's gapped (non-prelim): 771
length of query: 135
length of database: 4,842,793,630
effective HSP length: 100
effective length of query: 35
effective length of database: 3,430,355,930
effective search space: 120062457550
effective search space used: 120062457550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 76 (33.9 bits)