RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>gnl|CDD|177808 PLN00415, PLN00415, 3-ketoacyl-CoA synthase.
          Length = 466

 Score = 26.2 bits (57), Expect = 3.1
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 12/44 (27%)

Query: 102 TFANEQSTVRVYTPGTLSFLS------------CTPRCLPSSPP 133
           TF N     ++YT  T+ F++             +PRC+ +SPP
Sbjct: 80  TFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPP 123


>gnl|CDD|149722 pfam08750, CNP1, CNP1-like family.  This family of proteins are
          likely to be lipoproteins. CNP1 (cryptic neisserial
          protein) has been expressed in E. coli and shown to be
          localized periplasmicly.
          Length = 139

 Score = 26.1 bits (58), Expect = 3.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
               N +   V  +  L+F V  K + VG D +V         TVVIT
Sbjct: 19 APQTENLLPFDVSPATSLRFFVDAKSLSVGTDGVV-------RYTVVIT 60


>gnl|CDD|181263 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
          Length = 847

 Score = 25.7 bits (57), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 59  DKIVDVLALEKEKTVVITGKNLGSTNII 86
           D I   LA   +K ++I+G + GS  II
Sbjct: 484 DVIAQALA-GAKKPLIISGTSAGSPAII 510


>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 25.6 bits (57), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 10/39 (25%)

Query: 43  LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
           L+    V+PK + +G DK            +VITG N G
Sbjct: 310 LLDGEKVVPKDISLGFDK----------TVLVITGPNTG 338


>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
          Length = 463

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 5   RQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVL 50
           R  E+  ETV KKG  TTA  K    +   I  A  +S+   + VL
Sbjct: 231 RLEEVLTETVVKKGAVTTAVSKQG--DRYEISFANHESIQADYVVL 274


>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
          Length = 1159

 Score = 24.7 bits (54), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 63  DVLALEKEKTVVITGKNLGSTNIIVL 88
           D+L  EK   V I G  L + +I V+
Sbjct: 932 DILEFEKAGEVTIAGHTLKAGDIKVV 957


>gnl|CDD|179178 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
           Validated.
          Length = 361

 Score = 24.5 bits (54), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 84  NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
           NIIV G   D ++DT + TF +    V + TP T S+
Sbjct: 88  NIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTP-TFSY 123


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,132,915
Number of extensions: 124319
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 13
Length of query: 135
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 52
Effective length of database: 4,201,009
Effective search space: 218452468
Effective search space used: 218452468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)