RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG,
          structural genomics, PSI-2, protein structure
          initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
          (A:82-213)
          Length = 132

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 9  IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
          ++++ +          Q    D             I   DVL   V V D KI +++  +
Sbjct: 9  VRSKVIAPGNRI----QLGTHDGRT---FITDDKSIKVGDVL--AVSVPDXKISEIIKXQ 59

Query: 69 KEKTVVIT-GKNLGSTNIIV 87
                IT G ++  T  I 
Sbjct: 60 PGNKAYITAGSHVNQTGTIS 79


>1gml_A CCT-gamma; chaperone, chaperonin, actin, tubulin; 2.2A
          {Mus musculus} (A:1-28,A:108-178)
          Length = 99

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
          + ++NRI  A G  ++ + + L +  +     ++++  +  E    IT         I+L
Sbjct: 30 KTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILL 89


>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside
           hydrolase family 92, GH92, BT2199; HET: SWA; 1.90A
           {Bacteroides thetaiotaomicron} PDB: 2wvy_A*
           (A:273-296,A:590-737)
          Length = 172

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 59  DKIVDVLALEKEKTVVITGKNLGSTNIIV 87
            K+   L L + K  V++  +  +    +
Sbjct: 95  KKVT--LHLPEGKNFVVSAADNAADRPYI 121


>3fsa_A Azurin; copper, cupredoxin fold, metal-binding,
           protein-protein interaction, metal binding protein;
           0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A*
           2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A
           1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A
           1e5z_A 1e5y_A 1e67_A ... (A:)
          Length = 125

 Score = 24.6 bits (53), Expect = 5.3
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 71  KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
           K   +   + G+    V+GHN  +    ++     +
Sbjct: 27  KQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTD 62


>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4,
          U119A_human, HR3066A, NESG, structural genomics, PSI-2,
          protein structure initiative; 1.95A {Homo sapiens} (A:)
          Length = 195

 Score = 24.4 bits (53), Expect = 5.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 1  MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRI 35
           H  R++ I  E V      T     +PE+N  +I
Sbjct: 7  HHSHRKQPIGPEDVLGLQRITGDYLCSPEENIYKI 41


>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural
           genomics, TM0231, JCSG, PSI, protein structure
           initiative; 2.30A {Thermotoga maritima} (A:309-469)
          Length = 161

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 35  IRIAVGQSLILQFDVLPKQVIVGDDK--IVDVLALEKEKTVVITGK 78
                G+ +      L K+    +    +  V+++ +    +  G 
Sbjct: 87  KNGISGKXIWDSLKSLGKEAYFVEKLPELEKVISVSENTVFLFVGA 132


>1ewq_A DNA mismatch repair protein MUTS; multiple domains of
           protein, mostly mixed alpha-beta structures, one domain
           is entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
           (A:1-125)
          Length = 125

 Score = 23.7 bits (51), Expect = 9.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 110 VRVYTPGTL 118
            ++ TPGTL
Sbjct: 113 TQLLTPGTL 121


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 972,066
Number of extensions: 39190
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 11
Length of query: 135
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 56
Effective length of database: 2,285,454
Effective search space: 127985424
Effective search space used: 127985424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)