RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 30.0 bits (67), Expect = 0.079
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 9   IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIV----GDDKIVDV 64
            KN+T   KG   +    T   NS    + +   L+  +  +    +     GDD I   
Sbjct: 275 YKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASY 334

Query: 65  LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCT 124
                   +  +GK+ G T                  T A++ +T    T   ++FL   
Sbjct: 335 PHEVDASLLAQSGKDYGLT-----------------MTPADKSATFETVTWENVTFLKRF 377

Query: 125 PRCLPSSP 132
            R     P
Sbjct: 378 FRADEKYP 385


>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
           gamma chain [TaxId: 10090]}
          Length = 168

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 21  TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
            TA ++  + ++NRI  A G  ++ + + L +  +     ++++  +  E    IT    
Sbjct: 99  VTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD 158

Query: 81  GSTNIIVL 88
                I+L
Sbjct: 159 PKACTILL 166


>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
           HRV-16 [TaxId: 31708]}
          Length = 460

 Score = 24.6 bits (53), Expect = 2.8
 Identities = 24/127 (18%), Positives = 37/127 (29%), Gaps = 21/127 (16%)

Query: 10  KNETVRKKGIPTTASQKTPEDNS--NRIRI--AVGQSLILQFDVLPKQVIVGDDKIVDVL 65
           K+     +G   +    T   NS  N I I   V  +         K +  GDD I    
Sbjct: 275 KSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYK 334

Query: 66  ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
                + +   G+  G T                  T A++ S  +    G ++FL    
Sbjct: 335 YKLDMEAIAKEGQKYGLT-----------------ITPADKSSEFKELDYGNVTFLKRGF 377

Query: 126 RCLPSSP 132
           R      
Sbjct: 378 RQDDKYK 384


>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14,
           HRV-14 [TaxId: 12131]}
          Length = 460

 Score = 24.6 bits (53), Expect = 3.1
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 21/128 (16%)

Query: 9   IKNETVRKKGIPTTASQKTPEDNS--NRIRI--AVGQSLILQFDVLPKQVIVGDDKIVDV 64
            ++E    +G   +    T   NS  N I I   +  +         K +  GDD IV  
Sbjct: 274 FRDEIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSY 333

Query: 65  LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCT 124
                 + +   GKN G                    T  ++  T    T   L+FL   
Sbjct: 334 PYELDPQVLATLGKNYG-----------------LTITPPDKSETFTKMTWENLTFLKRY 376

Query: 125 PRCLPSSP 132
            +     P
Sbjct: 377 FKPDQQFP 384


>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 23.9 bits (51), Expect = 5.8
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 29/127 (22%)

Query: 10  KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLIL----------QFDVLPKQVIVGDD 59
               V+ K    +    T   NS    +    ++                       GDD
Sbjct: 292 DAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKSCAEIGLHCSNLYEDAPFYTYGDD 351

Query: 60  KI--VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
            +  +  + +     ++   ++ G +                  T A++   + V     
Sbjct: 352 GVYAMTPMMVSLLPAIIENLRDYGLS-----------------PTAADKTEFIDVCPLNK 394

Query: 118 LSFLSCT 124
           +SFL  T
Sbjct: 395 ISFLKRT 401


>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
           p450 systems {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 23.3 bits (49), Expect = 8.2
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 67  LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFA 104
           L  +  V++   N+      +L    D L  T+I   A
Sbjct: 37  LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAA 74


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 23.2 bits (50), Expect = 9.6
 Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 74  VITGKNLGSTNIIV--LGHNNDILLDTE 99
           +++ +      ++   LG NN++ L  +
Sbjct: 491 LVSFRYEDQGPLVEGQLGENNELRLTRD 518


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,534
Number of extensions: 20312
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)