Query gi|255764484|ref|YP_003065144.2| hypothetical protein CLIBASIA_03090 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 13:49:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764484.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2z_A Circadian clock protein 14.1 47 0.002 15.0 1.0 17 25-41 43-59 (111)
2 1r5q_A KAI A, circadian oscill 13.9 48 0.002 15.0 1.0 17 25-41 36-52 (102)
3 1jb0_A Photosystem I P700 chlo 11.8 89 0.0037 13.6 3.5 21 4-24 68-88 (755)
4 1v54_I STA, cytochrome C oxida 10.9 96 0.004 13.4 4.6 35 4-38 21-55 (73)
5 1r8j_A KAIA; circadian clock p 8.8 87 0.0037 13.6 0.9 17 25-41 221-237 (289)
6 1jb0_B Photosystem I P700 chlo 7.7 1.3E+02 0.0055 12.8 3.5 21 4-24 41-61 (740)
7 1pp9_D Cytochrome C-1, cytochr 5.1 1.9E+02 0.0078 11.9 2.2 21 10-30 215-235 (241)
8 2r2o_A Plexin-B1; effector dom 4.7 2E+02 0.0083 11.8 1.6 17 25-41 56-72 (138)
9 2k4v_A Uncharacterized protein 4.5 2E+02 0.0086 11.7 1.1 8 21-28 98-105 (125)
10 1zq7_A Hypothetical protein MM 3.8 2.4E+02 0.0099 11.4 1.8 16 21-36 70-85 (207)
No 1
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.80A {Thermosynechococcus elongatus bp-1} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=14.12 E-value=47 Score=15.01 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 43 id~FVn~aFfadi~v~~ 59 (111)
T 1v2z_A 43 IDEFVSKAFFADISVSQ 59 (111)
T ss_dssp HHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999971774889
No 2
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=13.91 E-value=48 Score=14.96 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 36 id~fVn~aFfadi~v~~ 52 (102)
T 1r5q_A 36 IDKFINAVFCANIPVPE 52 (102)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999972774889
No 3
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
Probab=11.79 E-value=89 Score=13.61 Aligned_cols=21 Identities=19% Similarity=0.684 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865899999999866
Q gi|255764484|r 4 LIEILLLSSFAVIAIIFLWAD 24 (43)
Q Consensus 4 lieilllssfaviaiiflwad 24 (43)
+..-+..|-|+-.||||+|..
T Consensus 68 l~rKIFssHFGhLaiIFlW~S 88 (755)
T 1jb0_A 68 ISRKIFSAHFGHLAVVFIWLS 88 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999864358999999971
No 4
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* 3ag3_I* ...
Probab=10.86 E-value=96 Score=13.44 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999986589999999986665776999985432
Q gi|255764484|r 4 LIEILLLSSFAVIAIIFLWADIREKSISAFFRDIP 38 (43)
Q Consensus 4 lieilllssfaviaiiflwadireksisaffrdip 38 (43)
++.-+.+|-....+.-|.++|-|.|.-..|+|.-.
T Consensus 21 iv~a~~~sl~~a~~~Kf~v~eprKkaYadFYknYD 55 (73)
T 1v54_I 21 IVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYD 55 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88988999999999999981088899999997227
No 5
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=8.78 E-value=87 Score=13.65 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 221 id~fvn~~ff~d~~v~~ 237 (289)
T 1r8j_A 221 IDNFVNMAFFADVPVTK 237 (289)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999988852785678
No 6
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
Probab=7.72 E-value=1.3e+02 Score=12.75 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865899999999866
Q gi|255764484|r 4 LIEILLLSSFAVIAIIFLWAD 24 (43)
Q Consensus 4 lieilllssfaviaiiflwad 24 (43)
+..-...+.|+-++|||+|..
T Consensus 41 ~~rKIFssHfghLaiIflWlS 61 (740)
T 1jb0_B 41 LYQKIFASHFGHLAIIFLWVS 61 (740)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999874248999999971
No 7
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 1bcc_D* 2bcc_D* 3bcc_D* 3l70_D* ...
Probab=5.05 E-value=1.9e+02 Score=11.94 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 865899999999866657769
Q gi|255764484|r 10 LSSFAVIAIIFLWADIREKSI 30 (43)
Q Consensus 10 lssfaviaiiflwadireksi 30 (43)
+.-++..----.|.||+.|.|
T Consensus 215 ~~vl~Yllkke~WkdvK~~~~ 235 (241)
T 1pp9_D 215 LLPLVYAMKRHKWSVLKSRKL 235 (241)
T ss_dssp HHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCEE
T ss_conf 999999999998687526522
No 8
>2r2o_A Plexin-B1; effector domain, structural genomics, structural genomics consortium, SGC, alternative splicing, coiled coil glycoprotein, membrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=4.70 E-value=2e+02 Score=11.81 Aligned_cols=17 Identities=18% Similarity=0.643 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
..||.+.|+||..|...
T Consensus 56 vKeKILDavYk~~p~S~ 72 (138)
T 2r2o_A 56 AKEKMLDQLYKGVPLTQ 72 (138)
T ss_dssp HHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999983498766
No 9
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=4.50 E-value=2e+02 Score=11.73 Aligned_cols=8 Identities=50% Similarity=0.958 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 98666577
Q gi|255764484|r 21 LWADIREK 28 (43)
Q Consensus 21 lwadirek 28 (43)
+++|||.|
T Consensus 98 mFeDIR~K 105 (125)
T 2k4v_A 98 MFEDIRAK 105 (125)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 10
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=3.78 E-value=2.4e+02 Score=11.41 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9866657769999854
Q gi|255764484|r 21 LWADIREKSISAFFRD 36 (43)
Q Consensus 21 lwadireksisaffrd 36 (43)
|+.+|.+..++|-|+|
T Consensus 70 L~~~v~~~A~~AA~~D 85 (207)
T 1zq7_A 70 LKEAILDSAISAATRD 85 (207)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998389
Done!