HHsearch alignment for GI: 255764485 and conserved domain: pfam09476

>pfam09476 Pilus_CpaD Pilus biogenesis CpaD protein (pilus_cpaD). Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.

Probab=100.00  E-value=0  Score=438.02  Aligned_cols=178  Identities=35%  Similarity=0.646  Sum_probs=175.1

Q ss_pred             CCCHHHCCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88711138577733772698851566768898888999999999974188729999249898878999999999999997
Q gi|255764485|r   65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS  144 (243)
Q Consensus        65 ~~DYR~RHPIvi~Ea~~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~~  144 (243)
T Consensus        22 p~dyr~~hpI~V~~~~~~~di~v~~~~~~Lt~~qr~~l~~f~~~~~~~g~g~i~I~~Psgs~n~~aa~~~~~~ir~~l~~  101 (200)
T pfam09476        22 PDDYRTRHPIVVEEADRTLDLPVGPGRGGLTASQRARLAGFAARYGRRGAGPLVIDVPSGSPNARAASALSAEVRALLAA  101 (200)
T ss_pred             CCCHHHCCCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             87475528966874354888732688898899999999999999845688618997589986357899999999999998


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC
Q ss_conf             59882340661036888543684667754445417888998133146755788623336256887898626968850688
Q gi|255764485|r  145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR  224 (243)
Q Consensus       145 ~GVp~~~I~v~~Y~a~~p~~aAPIRLSY~ri~A~ag~CG~WPeDL~~s~~~Nk~y~NFGCAtQ~NLAAqVaNP~DLv~PR  224 (243)
T Consensus       102 ~Gv~~~~I~~~~y~~~~~~~~a~IRl~~~r~~A~~p~Cg~w~~dl~-~~~~N~~~~N~GCa~~~nlAamva~P~DL~~~r  180 (200)
T pfam09476       102 AGVPPSNISVRAYDAAGARAPGPIRVSYTRYTAKVPPCGDWPEDLG-ATFENKPYPNFGCATQNNLAAMVANPRDLVQPR  180 (200)
T ss_pred             CCCCHHHEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC
T ss_conf             5998431554225777878887789999998976899999822255-543458788845274778998856988872778


Q ss_pred             CCCCCCHHHHHHHHHHHCC
Q ss_conf             8884436678889987519
Q gi|255764485|r  225 MVTPPDAEQRDKSIQRYRQ  243 (243)
Q Consensus       225 ~~tP~Da~RR~~viekYR~  243 (243)
T Consensus       181 ~~~~~d~~~~~~~~~~yr~  199 (200)
T pfam09476       181 AMTPADGARRTTVIEKYRK  199 (200)
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             7897508788879988518