Query gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 243
No_of_seqs 50 out of 52
Neff 3.1
Searched_HMMs 13730
Date Wed Jun 1 08:53:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764485.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2aizp1 d.79.7.1 (P:1-134) Pep 94.0 0.16 1.2E-05 27.8 8.0 84 81-164 28-116 (134)
2 d2hqsc1 d.79.7.1 (C:68-173) Pe 90.3 0.58 4.2E-05 24.0 10.2 80 84-163 3-87 (106)
3 d1r1ma_ d.79.7.1 (A:) Outer me 89.7 0.65 4.7E-05 23.7 7.0 80 84-163 13-97 (140)
4 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 64.7 4.1 0.0003 18.3 5.6 23 87-109 246-268 (623)
5 d1uaaa1 c.37.1.19 (A:2-307) DE 56.7 5.6 0.00041 17.4 6.3 57 93-160 1-57 (306)
6 d1pjra1 c.37.1.19 (A:1-318) DE 52.7 6.5 0.00047 16.9 7.1 59 92-161 10-68 (318)
7 d1x3aa1 a.240.1.1 (A:8-94) Syn 39.7 8.4 0.00061 16.2 2.4 29 20-48 50-84 (87)
8 d1j5ya2 d.94.2.1 (A:68-174) Pu 36.0 12 0.00085 15.2 2.7 65 75-147 24-103 (107)
9 d1l0ba2 c.15.1.3 (A:1705-1801) 29.8 15 0.0011 14.6 2.9 41 43-83 17-57 (97)
10 d1t95a3 d.58.11.3 (A:162-234) 27.7 6.6 0.00048 16.9 0.2 51 73-128 3-57 (73)
No 1
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]}
Probab=94.03 E-value=0.16 Score=27.76 Aligned_cols=84 Identities=8% Similarity=0.080 Sum_probs=64.5
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 269885156676889888899999999997418872999924-----989887899999999999999759882340661
Q gi|255764485|r 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP-----SPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155 (243)
Q Consensus 81 ~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vP-----sGS~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~ 155 (243)
+...|++..+.-.|++.++..+..+++.-.....-.|.|.-= +...|-.....=+..|+..|...||++..|.+.
T Consensus 28 ~~~~I~F~~~s~~L~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~ 107 (134)
T d2aizp1 28 RYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTV 107 (134)
T ss_dssp TSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 67818837998124988999999999999869996899960434332211101378999999998997718753455137
Q ss_pred CCCCCCCCC
Q ss_conf 036888543
Q gi|255764485|r 156 IYDADYGMD 164 (243)
Q Consensus 156 ~Y~a~~p~~ 164 (243)
.|-.+.|..
T Consensus 108 g~G~~~P~~ 116 (134)
T d2aizp1 108 SYGEEKPAV 116 (134)
T ss_dssp ECTTTSCSS
T ss_pred ECCCCCCCC
T ss_conf 754337578
No 2
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=90.29 E-value=0.58 Score=24.03 Aligned_cols=80 Identities=8% Similarity=0.059 Sum_probs=63.4
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 8851566768898888999999999974188729999249898-----87899999999999999759882340661036
Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----SSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 (243)
Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~-----Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~ 158 (243)
.|++..+.-.|++.....+...+........-.|.|.-=+.+. |-.-...=+..|+..|...||++..|.+..|-
T Consensus 3 ~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G 82 (106)
T d2hqsc1 3 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 82 (106)
T ss_dssp EEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 89947997738988999999999999868995799984334221046665588998767999998669866448999835
Q ss_pred CCCCC
Q ss_conf 88854
Q gi|255764485|r 159 ADYGM 163 (243)
Q Consensus 159 a~~p~ 163 (243)
.+.|-
T Consensus 83 ~~~p~ 87 (106)
T d2hqsc1 83 KEKPA 87 (106)
T ss_dssp TSSCS
T ss_pred CCCCC
T ss_conf 64767
No 3
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=89.66 E-value=0.65 Score=23.70 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=59.4
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---CCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 885156676889888899999999997418872999924---9898--87899999999999999759882340661036
Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---SPTV--SSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 (243)
Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vP---sGS~--Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~ 158 (243)
++++..+.-.|++.....+..+++.-.......|.|.-= .|+. |-.....=+..|...|...||++..|.+..|-
T Consensus 13 ~~~F~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G 92 (140)
T d1r1ma_ 13 KTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLG 92 (140)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 30662897427989999999999987219970899998606544212103678899999999999759993759999972
Q ss_pred CCCCC
Q ss_conf 88854
Q gi|255764485|r 159 ADYGM 163 (243)
Q Consensus 159 a~~p~ 163 (243)
-+.|.
T Consensus 93 e~~P~ 97 (140)
T d1r1ma_ 93 ESQAQ 97 (140)
T ss_dssp TTTCC
T ss_pred CCCCC
T ss_conf 57877
No 4
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=64.67 E-value=4.1 Score=18.28 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=8.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 15667688988889999999999
Q gi|255764485|r 87 LLAGRGEIKYPIHDTIRGFLEKY 109 (243)
Q Consensus 87 Vg~g~g~Lt~~qr~~V~gFa~~y 109 (243)
+|-.++-+-.-.-+++..|.+-.
T Consensus 246 ~gd~~q~iy~f~ga~~~~~~~~~ 268 (623)
T g1qhh.1 246 VGDADQSIYRWRGADIQNILSFE 268 (623)
T ss_dssp EECGGGCCCGGGTCCTHHHHHHH
T ss_pred EECCCCCCCCCCCCCHHHHHHHH
T ss_conf 50465432466788889999998
No 5
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=56.66 E-value=5.6 Score=17.36 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 88988889999999999741887299992498988789999999999999975988234066103688
Q gi|255764485|r 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160 (243)
Q Consensus 93 ~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~a~ 160 (243)
.|++.|+..|+. -.|++.|.-|.||=-.. .++.-|..++...|+++.+|.+.+|.-+
T Consensus 1 ~L~~eQ~~av~~--------~~~~~lI~g~aGTGKTt---~l~~rv~~ll~~~~~~~~~ILvlt~tn~ 57 (306)
T d1uaaa1 1 RLNPGQQQAVEF--------VTGPCLVLAGAGSGKTR---VITNKIAHLIRGCGYQARHIAAVTFTNK 57 (306)
T ss_dssp CCCHHHHHHHHC--------CSSEEEECCCTTSCHHH---HHHHHHHHHHHHHCCCGGGEEEEESSHH
T ss_pred CCCHHHHHHHHC--------CCCCEEEEEECCCCHHH---HHHHHHHHHHHHCCCCHHHEEEEECCHH
T ss_conf 969899999819--------99998999628843899---9999999999956999557899968699
No 6
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=52.72 E-value=6.5 Score=16.94 Aligned_cols=59 Identities=8% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 6889888899999999997418872999924989887899999999999999759882340661036888
Q gi|255764485|r 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161 (243)
Q Consensus 92 g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~a~~ 161 (243)
-+|++.|+..|+. -.|++.|.-|.||--. ..+++-|..++...++++.+|.+..|.-+.
T Consensus 10 ~~L~~eQ~~~v~~--------~~g~~lV~g~aGSGKT---t~l~~ri~~ll~~~~~~p~~il~lt~t~~a 68 (318)
T d1pjra1 10 AHLNKEQQEAVRT--------TEGPLLIMAGAGSGKT---RVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 (318)
T ss_dssp TTSCHHHHHHHHC--------CSSCEEEEECTTSCHH---HHHHHHHHHHHHTTCCCGGGEEEEESSHHH
T ss_pred HHCCHHHHHHHHC--------CCCCEEEEECCCCCHH---HHHHHHHHHHHHCCCCCHHHEEEEECCHHH
T ss_conf 8678999999829--------9999899952986689---999999999998089987893757664989
No 7
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.71 E-value=8.4 Score=16.18 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=19.0
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_conf 6489999999------9987567999999999999
Q gi|255764485|r 20 ANMRSLISCL------KTIFWKNFFLRTLMLGQLF 48 (243)
Q Consensus 20 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 48 (243)
.+++.+...| ...||+++|.|--++-|-.
T Consensus 50 ~~L~~~~~~LVP~~v~e~~FW~rYF~~v~~lkq~~ 84 (87)
T d1x3aa1 50 ELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSA 84 (87)
T ss_dssp HHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999878787589999999999999999987
No 8
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator TM1602, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=36.01 E-value=12 Score=15.24 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=45.9
Q ss_pred EEEECCEEEEEECCCC-----CCCCCHHHHHHHHHHHHHHHHCCCCEE----------EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7733772698851566-----768898888999999999974188729----------9992498988789999999999
Q gi|255764485|r 75 LMRKVEQIVDIPLLAG-----RGEIKYPIHDTIRGFLEKYKNDSASVL----------FLLIPSPTVSSASIRRAVKDIR 139 (243)
Q Consensus 75 vi~Ea~~tlDIpVg~g-----~g~Lt~~qr~~V~gFa~~yrr~G~G~i----------~I~vPsGS~Na~AA~~~~~eIR 139 (243)
+|.-+-..+||+|-.. ++.|.-+.|.+|..|+.......+-++ +|.+|+ .....+|.
T Consensus 24 IVd~Gg~V~DV~VeHpvYGei~~~L~I~sr~Dv~~F~~~l~~~~a~~L~~LT~GvH~HtI~a~~--------ee~l~~I~ 95 (107)
T d1j5ya2 24 VVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGVHLHTIEAPD--------EETMERIM 95 (107)
T ss_dssp HHHTTCEEEEEEEEETTTEEEEEEEEECSHHHHHHHHHHHHHCCSCCSTTGGGGEEEEEEEESS--------HHHHHHHH
T ss_pred HHHCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEEECC--------HHHHHHHH
T ss_conf 9968999999999468873689999528999999999997426870678852987569998599--------99999999
Q ss_pred HHHHHCCC
Q ss_conf 99997598
Q gi|255764485|r 140 KIIISSGI 147 (243)
Q Consensus 140 ~~L~~~GV 147 (243)
+.|...|.
T Consensus 96 ~~L~~~G~ 103 (107)
T d1j5ya2 96 RELKKKGF 103 (107)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
T ss_conf 99998698
No 9
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.80 E-value=15 Score=14.57 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCEEEEECCEEE
Q ss_conf 99999999999602200110278871113857773377269
Q gi|255764485|r 43 MLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIV 83 (243)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~DYR~RHPIvi~Ea~~tl 83 (243)
-..||-+++-+-|.|-..--.+=+-++..||++|-+-+.--
T Consensus 17 t~d~Le~mv~lCGAsVvk~~~~l~~~~~~~~viVvqpda~t 57 (97)
T d1l0ba2 17 PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWT 57 (97)
T ss_dssp CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-----
T ss_pred CHHHHHHHHHHCCCEEECCHHHCCCCCCCEEEEEECCCCCC
T ss_conf 89999999998196434686344878897039998688553
No 10
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.67 E-value=6.6 Score=16.88 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=37.1
Q ss_pred CEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEEECCCCCCH
Q ss_conf 5777337726988515667688988889999999----9997418872999924989887
Q gi|255764485|r 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFL----EKYKNDSASVLFLLIPSPTVSS 128 (243)
Q Consensus 73 PIvi~Ea~~tlDIpVg~g~g~Lt~~qr~~V~gFa----~~yrr~G~G~i~I~vPsGS~Na 128 (243)
||-++++.=.+-|| +.. .+.-...+..|+ ++|...|+=..++++|.|.-|+
T Consensus 3 Pikfe~~~lavkIP-~~~----~gka~~~l~~~g~i~kEeW~~DGSw~~vveiPaG~q~e 57 (73)
T d1t95a3 3 PLKFEEMEIAIKIP-PEH----TGRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYGD 57 (73)
T ss_dssp CCEECEEEEEEEEC-GGG----HHHHHHHHHHHCCEEEEEECTTSCEEEEEEEEGGGHHH
T ss_pred CEEEEEEEEEEEEC-HHH----HHHHHHHHHHHCCCHHHCCCCCCCEEEEEEECCCCHHH
T ss_conf 63777889999989-899----78899999971851243146788689999946410598
Done!