BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
(243 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547836|gb|ACT57199.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA
Sbjct: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL
Sbjct: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG
Sbjct: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR
Sbjct: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
Query: 241 YRQ 243
YRQ
Sbjct: 241 YRQ 243
>gi|315121890|ref|YP_004062379.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495292|gb|ADR51891.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 224
Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 188/243 (77%), Gaps = 23/243 (9%)
Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
MM + MI +FGG+CFK L + FFL Q+ FLLLF G + LA
Sbjct: 1 MMRDIMIKEIFGGMCFKRLVS---------------FFLM-----QISFLLLFCGNNVLA 40
Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
+DYRDRYPI+M+KVE+ +DIPLL+GRG++ ++DTI+GF+++YK +S SV+F+L
Sbjct: 41 ---NQNDYRDRYPIVMKKVEKSLDIPLLSGRGKLPSDMYDTIKGFIDRYKQNSTSVIFIL 97
Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
IP+PT+SS +I+ A+K+IR+ IIS+GIP SS+SER YDADY +D+DTIRLSYFAS+PSAG
Sbjct: 98 IPTPTISSHAIQDALKNIRRFIISNGIPSSSLSERSYDADYELDIDTIRLSYFASRPSAG 157
Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
KCGFWPED+LG++ N NW+NYGC+YQNNLAAQ+VNP+DLF+PR +TPPDA RD+SI R
Sbjct: 158 KCGFWPEDILGSSLENSNWSNYGCSYQNNLAAQIVNPMDLFAPRSMTPPDAVHRDRSIHR 217
Query: 241 YRQ 243
Y++
Sbjct: 218 YQE 220
>gi|15963895|ref|NP_384248.1| hypothetical protein SMc04110 [Sinorhizobium meliloti 1021]
gi|307315792|ref|ZP_07595306.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti BL225C]
gi|15073070|emb|CAC41529.1| Pilus assembly protein cpaD [Sinorhizobium meliloti 1021]
gi|306898560|gb|EFN29233.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti BL225C]
Length = 226
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+SV+ +++P +V
Sbjct: 37 DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + + KDIR+++ +SG+ + E YDA D IRLSY A CG WP
Sbjct: 97 NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R
Sbjct: 157 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212
>gi|307320427|ref|ZP_07599844.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti AK83]
gi|306893993|gb|EFN24762.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti AK83]
Length = 226
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+SV+ +++P +V
Sbjct: 37 DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + + KDIR+++ +SG+ + E YDA D IRLSY A CG WP
Sbjct: 97 NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R
Sbjct: 157 EDLALNTLVNRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212
>gi|222147181|ref|YP_002548138.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734171|gb|ACM35134.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 196
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 103/176 (58%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ VE +D+P+ G + + D + GF + Y+N S + +L+P +
Sbjct: 9 DYRTRHPIIVTDVEHSLDLPVAQGSSRLTIGMSDAVTGFAQDYRNASTGYVQILVPQGSP 68
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + + +R +++S GI I ER Y A D IRLSY A+ AG CG WP
Sbjct: 69 NTMAASSIARQVRNLLVSKGIAAPKIVERPYRAGATGDAAPIRLSYVATTAVAGPCGQWP 128
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ + N+NW N+GCA Q NLAAQV +P DL +PR +TP DAE+R I YR
Sbjct: 129 EDLSNDTAQNKNWQNFGCASQANLAAQVASPTDLIAPRGMTPIDAERRSTVIDNYR 184
>gi|150398542|ref|YP_001329009.1| pilus biogenesis lipoprotein CpaD [Sinorhizobium medicae WSM419]
gi|150030057|gb|ABR62174.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
medicae WSM419]
Length = 242
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 107/176 (60%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+ V+ +++P +V
Sbjct: 53 DYRTRHPIVLTEGERTIDIPVASGDTRLTQGTRDVIRGFAAEYRNASSGVVQIMLPRGSV 112
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + + K+IR+++ SG+ I E YDA D IRLSY A CG WP
Sbjct: 113 NGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVAITAQTAPCGAWP 172
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R
Sbjct: 173 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWR 228
>gi|159184217|ref|NP_353253.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|159139546|gb|AAK86038.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 193
Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 103/176 (58%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS +
Sbjct: 9 DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSP 68
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ R K IR + +G+ I E Y A D IRLSY A G+CG WP
Sbjct: 69 NSATAARMAKQIRSTLSGAGVAQGKIMETRYAASPNGDSAPIRLSYVAVTAMTGQCGQWP 128
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N N+NW N+GCA Q+NLAAQ+ NP+DL PR ++P DAE+R I YR
Sbjct: 129 EDLSDNTFANKNWYNFGCASQSNLAAQIANPMDLVGPRGMSPIDAERRAVVIDTYR 184
>gi|227823972|ref|YP_002827945.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
gi|227342974|gb|ACP27192.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
Length = 234
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 108/176 (61%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + E+++DIP+ +G + D IRGF +Y+N S V+ +++P +
Sbjct: 53 DYRTRHPIVIAEGERVIDIPVASGDRRLTAGTRDVIRGFATEYRNASGGVIQIMLPRGSA 112
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+S + + KDIR+++ +SG+P + E Y+A D IRLSY A CG WP
Sbjct: 113 NSHAAQIVRKDIRRLLAASGVPPKRMIETGYEAVSPGDAAPIRLSYVAITAQTAPCGEWP 172
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DA QR + I +R
Sbjct: 173 EDLTLNTLQNRNYYNFGCASQSNLAAQIANPTDLIGPRQMSPVDAAQRGEVIDAWR 228
>gi|325291658|ref|YP_004277522.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059511|gb|ADY63202.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 252
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 104/176 (59%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS +
Sbjct: 68 DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSA 127
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + + IR + +G+P I E Y A D IRLSY A G+CG WP
Sbjct: 128 NSAAASKMARQIRSALSGAGVPSGKIMETRYAASPNGDAAPIRLSYVAVTAMTGQCGQWP 187
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+ N N+NW N+GCA Q+NLAAQV NP+DL PR ++P DAE+R I YR
Sbjct: 188 EDLSDNTFANKNWYNFGCASQSNLAAQVANPMDLVGPRGMSPIDAERRAVVIDAYR 243
>gi|222084470|ref|YP_002542999.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721918|gb|ACM25074.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 235
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 105/176 (59%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ E VDIP+ + + DT+RGF++ Y+ + + ++ P +
Sbjct: 46 DYRQRHPIVLTDKEHRVDIPVSVSDRRLTSGMRDTVRGFVQDYRAHATGTVEIMTPRESA 105
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + IR+ +++SGIP + I++ Y A D IRL + A+ CG WP
Sbjct: 106 NSAAASALRRQIRQELMASGIPSARITDNYYPAGGPGDAAPIRLRFMATAAVTNACGQWP 165
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
D+ NA N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA+QR K I YR
Sbjct: 166 ADLADNAFDNQNYYNFGCATQNNLAAQVANPTDLIAPRAMTPIDADQRSKVIDNYR 221
>gi|304392383|ref|ZP_07374324.1| pilus assembly protein [Ahrensia sp. R2A130]
gi|303295487|gb|EFL89846.1| pilus assembly protein [Ahrensia sp. R2A130]
Length = 227
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 104/178 (58%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
S+Y+ R+PI++ + EQ +DIP+ + + GF KY+ + + ++IP +
Sbjct: 35 SNYKTRHPIVIDEKEQTLDIPVGSDTVRLPRAQESATEGFASKYRRSPSGTMTIMIPRHS 94
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++++ R + +I+ G+P SSI YDA IR+SY A + S +CG W
Sbjct: 95 PNASAARSMSHQVAEILRREGVPPSSIVTTSYDASRHGSAAPIRVSYHAVQASVERCGKW 154
Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
PED+ G N+NW N+GCA QNN+AAQ+ NP DL +PR +T DAE+R+ I+ YR+
Sbjct: 155 PEDLAGPNLDNQNWHNFGCANQNNMAAQIANPSDLVAPRGMTQADAERRNNVIEDYRE 212
>gi|110636322|ref|YP_676530.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium sp. BNC1]
gi|110287306|gb|ABG65365.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Chelativorans
sp. BNC1]
Length = 226
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + EQ++D+P+ + ++ GF+E Y +V+ +L+PS +
Sbjct: 37 DYRTNHPIVLSEKEQVLDLPVGVFSYRMTPQQKMSLEGFMEHYGESGKAVVTVLVPSGSP 96
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + R +DI + + G+P + YDA +R+SY + G+CG WP
Sbjct: 97 NERAASRLSEDIAQFLYRRGVPKGHLQVLSYDAP-AEQASPVRVSYSVVAATTGQCGRWP 155
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+L + N+++ N+GCAYQNNLAAQ+ NP+DL PR TP DAE RD +I RY+
Sbjct: 156 EDLLDTTE-NKHYANFGCAYQNNLAAQIANPMDLLGPRKTTPIDAENRDTAIGRYK 210
>gi|163757628|ref|ZP_02164717.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
gi|162285130|gb|EDQ35412.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
Length = 233
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + E+ VDIP+ G E+ + + +RG Y++ ++ + +++P +
Sbjct: 49 DYRTNHPIIVAEQERTVDIPVGTGDRELTTSMREIVRGAAHSYRSSASGAVRIMVPVGSA 108
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + + KI+ G+P I Y D IR++Y A S KCG WP
Sbjct: 109 NAGAASILSGQVAKILQKEGVPRDRILSSPYSVSSPDDAAPIRIAYLAITASTEKCGRWP 168
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
ED+ + N++W N+GCA Q+NLAAQ+ NP DL +PR ++P DAE+R I+ YR+
Sbjct: 169 EDLAADTTENKHWANFGCASQSNLAAQIANPGDLIAPRGMSPIDAERRSTIIETYRE 225
>gi|116249982|ref|YP_765820.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254630|emb|CAK05704.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 250
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPQGSP 121
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + +R + S GI S I Y A D IRLS+ + +CG WP
Sbjct: 122 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAVTTQCGQWP 181
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KD-ISNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|190889882|ref|YP_001976424.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695161|gb|ACE89246.1| pilus assembly protein [Rhizobium etli CIAT 652]
Length = 252
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEGSP 121
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + +R + S GI S I Y A D IRLS+ + +CG WP
Sbjct: 122 NSAAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KD-ISNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|241207158|ref|YP_002978254.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861048|gb|ACS58715.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 235
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 46 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFATNYISRASGPVYVLSPQGSP 105
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + +R + S GI S I Y A D IRLS+ + +CG WP
Sbjct: 106 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAAGPGDAAPIRLSFTGTTAVTTQCGQWP 165
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 166 KD-ISNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 220
>gi|13474661|ref|NP_106230.1| pilus assembly protein cpaD [Mesorhizobium loti MAFF303099]
gi|14025416|dbj|BAB52016.1| pilus assembly protein; CpaD [Mesorhizobium loti MAFF303099]
Length = 251
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + IPS +
Sbjct: 61 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTIQIPSGSA 120
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + A +D ++ ++SG+ + I Y A +R+SY A + KCG WP
Sbjct: 121 NEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGSSETSAPVRVSYIAVRAQTDKCGRWP 180
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED+L ++ N+++ ++GC+YQNNLAAQ+ NP DL PR T DAE R K I YR
Sbjct: 181 EDLLETSE-NKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGKVIDVYR 235
>gi|327194693|gb|EGE61539.1| pilus assembly protein [Rhizobium etli CNPAF512]
Length = 252
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEDSP 121
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+S + + +R + S GI S I Y A D IRLS+ + +CG WP
Sbjct: 122 NSTAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KD-ISNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|209551760|ref|YP_002283677.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537516|gb|ACI57451.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 244
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y ++ +++L P +
Sbjct: 54 DYRARHPIIVTEAEQTVDIPVASTDRRLTNAQRDLIRGFAANYIARASGPVYVLSPQGSP 113
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + +R + S GI S I Y A D IRLS+ + +CG WP
Sbjct: 114 NSAAAYQLRNQVRAELASRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAITTQCGQWP 173
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 174 KD-ISNDFTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 228
>gi|260461948|ref|ZP_05810193.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
opportunistum WSM2075]
gi|259032195|gb|EEW33461.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
opportunistum WSM2075]
Length = 243
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + IPS +
Sbjct: 53 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPALTIQIPSGSA 112
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + R A +D ++ ++SGI + I+ Y A +R+S+ A + KCG WP
Sbjct: 113 NEVAARAAGRDFARLAVASGIKRNRIAVVSYQAGSSEASAPVRVSFIAVRAQTDKCGRWP 172
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED++ +++ N+++ ++GC+YQNNLAAQ+ NP DL PR T DAE R I YR
Sbjct: 173 EDLVESSE-NKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGAVIDVYR 227
>gi|86355865|ref|YP_467757.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279967|gb|ABC89030.1| pilus assembly protein [Rhizobium etli CFN 42]
Length = 233
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 43 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 102
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+SA+ + +R + + GI S I Y A D IRLS+ + +CG WP
Sbjct: 103 NSAAADQLRNQVRAELTTRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 162
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+D + N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 163 KD-ISNDLANQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 217
>gi|254503403|ref|ZP_05115554.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
gi|222439474|gb|EEE46153.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
Length = 221
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 98/176 (55%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR ++PI++ + + +D+P+ ++ P+ DTI F + + + +L+P+
Sbjct: 27 DYRYQHPIVVSEAPETLDLPVGKNTRNLRSPVTDTITSFAMDSRRHGSGNVEILVPTGAA 86
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ +++ V DIR + G+ ++ R Y + IRLSY K + G+CG WP
Sbjct: 87 NESAVHAVVHDIRGALSRGGVNGKHVTTRTYRSTDSSADAPIRLSYARMKATTGECGAWP 146
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+++ G N N+ N+GCA Q+NLAA V NP DL +PR +TP D +R I++YR
Sbjct: 147 KNIGGGIGENTNYYNFGCATQSNLAAIVENPSDLITPRAMTPSDQNRRAVVIEKYR 202
>gi|319785607|ref|YP_004145083.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171495|gb|ADV15033.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 245
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + +PS +
Sbjct: 55 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDRSAAPTLTIQVPSGSA 114
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + A +D ++ ++SGI + I Y + IR++Y + K KCG WP
Sbjct: 115 NEVAATTAARDFARLAVASGIKRNRIVVTSYQSASAEASAPIRVAYISVKAQTDKCGRWP 174
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
ED++ ++ N+++ ++GC+YQNNLAAQ+ NP DL PR D R ++I Y++
Sbjct: 175 EDLMETSE-NKHYADFGCSYQNNLAAQMANPADLLGPRKSANIDPANRSQAIDVYQK 230
>gi|114705455|ref|ZP_01438363.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540240|gb|EAU43360.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 230
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 5/209 (2%)
Query: 38 FLRTLMLGQLFFLLLFYGTSALAYYDE-GS---DYRDRYPILMRKVEQIVDIPLLAGRGE 93
+R L L + L G ++ E GS DYR R+PI++ + ++ +DIP++ +
Sbjct: 5 IIRPLATASLVGIALALGACGNVHHIEVGSVPDDYRTRHPIVVSEADEAIDIPVVTSDQK 64
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ I F +++ A + +L+P + ++ + + + ++ +G+ I
Sbjct: 65 LAMSDSGRIEDFAHRFRRSGADTMTVLVPYGSRNAVAASSISHEAIRTLMKAGVRREQIV 124
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
+ Y A + IRL++ G CG WPED L + N+N+ N+GCA Q NLAAQ
Sbjct: 125 MQSYAAHDALGPTPIRLTFSTLVAQTGPCGRWPED-LNSTHENKNYANFGCATQQNLAAQ 183
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ +P DL SPR + P D E+RD+ I++YR
Sbjct: 184 IADPRDLLSPRGMGPVDGERRDQVIEKYR 212
>gi|118589704|ref|ZP_01547109.1| components of type IV pilus [Stappia aggregata IAM 12614]
gi|118437790|gb|EAV44426.1| components of type IV pilus [Stappia aggregata IAM 12614]
Length = 238
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + + +D+P+ I PI TI F ++ + + +L+PS
Sbjct: 43 DYRLMHPIVITEEPETLDLPVGRNTRNINGPIESTIAAFGQQSRQKGNGSVEILVPSGGA 102
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYD-ADYGMDVDTIRLSYFASKPSAGKCGFW 185
+ A++ IR+ + G+ + IS R Y D G D IRLSY + +AG+CG W
Sbjct: 103 NEAAVHSITPKIRQALQQGGVSRNRISTRTYSVGDPGADA-PIRLSYARMQATAGECGAW 161
Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
P ++ G N N+ N+GCA Q NLAA V NP DL +PR P D +R I++YR+
Sbjct: 162 PRNIGGGFGENINYENFGCASQANLAAMVDNPSDLITPRASAPSDQGRRAVVIEKYRK 219
>gi|153008060|ref|YP_001369275.1| pilus biogenesis lipoprotein CpaD [Ochrobactrum anthropi ATCC
49188]
gi|151559948|gb|ABS13446.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
anthropi ATCC 49188]
Length = 239
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 98/174 (56%), Gaps = 4/174 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L++L+PS T
Sbjct: 42 DYRTNHPITIAEREQVTDIPVAQADQKLSPMQRGIVQGAIANYRRGGSGMLYVLVPSGTS 101
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ A+ R ++ ++ GI ++I+ Y + IR+SY+A CG WP
Sbjct: 102 NQAAAYRLSTEVSAMLRRGGIKANNIAIENYPVENPEAAAPIRISYYAMTAGTTPCGRWP 161
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
+D L + N+++ N+GCA QNNLAAQV NP DL PR+++P D+ D++ +R
Sbjct: 162 DD-LASTPENKHYANFGCASQNNLAAQVANPADLLGPRVMSPIDS---DRTTER 211
>gi|328545278|ref|YP_004305387.1| Pilus biogenesis lipoprotein CpaD [polymorphum gilvum SL003B-26A1]
gi|326415020|gb|ADZ72083.1| Pilus biogenesis lipoprotein CpaD [Polymorphum gilvum SL003B-26A1]
Length = 239
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI++ + + +D+P+ + + + F + + + + +L+PS
Sbjct: 42 NDYRLRHPIVITEQAETLDLPVGQSTRNLNRDFAERVTEFGQASRRNGNGHVEILVPSGA 101
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
+ A++ IR + G+ + +S R Y D IRL+Y K SAG CG W
Sbjct: 102 ANEAAVHAVTPRIRSALALGGVSGTHVSTRSYPVDDATAQAPIRLAYTRIKASAGPCGEW 161
Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
P ++ G+ N+++ N+GCA Q NLAA V NP DL PR +TP D +R Q+YR
Sbjct: 162 PANIGGSLNANQDYYNFGCATQANLAAMVDNPADLLGPRAMTPADQMRRATVFQKYR 218
>gi|299132287|ref|ZP_07025482.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
gi|298592424|gb|EFI52624.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
Length = 246
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++++ + +I + RG + I G + + ++ + + +P+ T
Sbjct: 44 DYRLRHPIVIQEASKTTEIFVGHARGGLTTAQRADIVGLSQAWLSEGTGAITIDVPTGTP 103
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + V+DI+ I+ ++GIP I Y + +R+ Y AG CG WP
Sbjct: 104 NAQAASVTVRDIQNILAAAGIPPKGIRVMPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 163
Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
ED+ + K NR++ N+GCAYQ N+AA V NP DL PR TPP++ +R ++ +Y
Sbjct: 164 EDLGPSVKNKSYFENRSYQNFGCAYQRNMAAMVANPADLVQPRAETPPNSARRTEAFAKY 223
Query: 242 R 242
R
Sbjct: 224 R 224
>gi|239833236|ref|ZP_04681565.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
intermedium LMG 3301]
gi|239825503|gb|EEQ97071.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
intermedium LMG 3301]
Length = 239
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 1/167 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L++L+PS
Sbjct: 42 DYRTNHPITIAEREQVTDIPIAQADQKLSPMQRGIVQGAIANYRRSGSGMLYVLVPSGAS 101
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ A+ R ++ + SGI ++I+ Y + IR+SY+A CG WP
Sbjct: 102 NQAAAYRLSTEVAATLRRSGIKANNIAIENYPVESPDAAAPIRISYYAITAGTTPCGRWP 161
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233
+D L + N+++ N+GC QNNLAAQV NP DL PR +TP D+++
Sbjct: 162 DD-LASTPENKHYANFGCVSQNNLAAQVANPADLLGPRTMTPIDSDR 207
>gi|307943146|ref|ZP_07658491.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
gi|307773942|gb|EFO33158.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
Length = 237
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 5/208 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGSD-----YRDRYPILMRKVEQIVDIPLLAGRGEI 94
RT + F LL G ++ S+ Y+ R+PI++ + +++D+P+ A +
Sbjct: 10 RTAIGATFFVSLLLAGCNSQTVGQNNSNLAATNYQLRHPIVVTEQPEVLDLPIGAHMRNL 69
Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISE 154
P+ T++ F + + +L+PS + A++ V IR + + G+ +IS
Sbjct: 70 NGPLRGTVKAFGADSRKKGNGRVEILVPSGGRNEAAVHALVPQIRSSLKAGGLSGGAIST 129
Query: 155 RIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214
R Y D IRLSY + +AG CG W D+ N ++ NYGCA Q+NLAA V
Sbjct: 130 RSYAVDNPSADAPIRLSYPRIQATAGPCGTWNGDIGRTFDRNVDYENYGCATQSNLAAMV 189
Query: 215 VNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR P D +R +++YR
Sbjct: 190 ENPSDLLTPRASAPADRMRRANVVEKYR 217
>gi|209886531|ref|YP_002290388.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
gi|209874727|gb|ACI94523.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
Length = 247
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++++ + +I + RG + I G + + ++ + + P+ T
Sbjct: 45 DYRARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAITIDTPTGTP 104
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + V+DI+ +++++GIP + + Y + +R+ Y AG CG WP
Sbjct: 105 NAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 164
Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
ED+ + K NR + N+GCAYQ N+AA V NP DL PR +P ++ +R ++ +Y
Sbjct: 165 EDLGPSVKNKSYFENRPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRSQAFTKY 224
Query: 242 R 242
R
Sbjct: 225 R 225
>gi|146338122|ref|YP_001203170.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
gi|146190928|emb|CAL74933.1| Putative pilus assembly protein cpaD; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 246
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI +++ + + + GRG + + G + + + +PS T
Sbjct: 44 DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMGLAQSWMRQGTGAIVADVPSGTP 103
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG WP
Sbjct: 104 NARAAADSMREIQSLFSAAGVPPHGVTVRNYQPKDPRQMAAIRLSYPKLSATAGPCGLWP 163
Query: 187 EDMLGNAKGNRNW------TNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
+D LG + N+NW N+GCAYQ N+AA V NP DL PR TP +R ++
Sbjct: 164 DD-LGPSVKNKNWFDNKPDWNFGCAYQRNMAAMVDNPADLVQPRPETPSYTTRRTALFEK 222
Query: 241 YRQ 243
YR+
Sbjct: 223 YRK 225
>gi|115525750|ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
BisA53]
gi|115519697|gb|ABJ07681.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
BisA53]
Length = 249
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI +++ +Q ++I + GRG + P I + + +++ + + P+ T
Sbjct: 47 DYRQRHPIAIQEADQTLNIFVGTGRGGLTGPQRAAIAAVAQSWLSEATGRIVIDQPAQTP 106
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + +V++IR ++ ++GIP ++++ R Y IR++Y +AG CG WP
Sbjct: 107 NARAAADSVREIRALLAAAGIPTNAVAVREYQPSDPRLFAAIRVNYPRLVATAGPCGLWP 166
Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+D+ + N+ N+GCA Q NLAA V NP DL PR TP +R + +Y
Sbjct: 167 DDLGPSVNNPGYIENKPSYNHGCAVQRNLAAMVENPADLVQPRAETPAYTARRTIAFDKY 226
Query: 242 RQ 243
R+
Sbjct: 227 RK 228
>gi|39936741|ref|NP_949017.1| pilus assembly protein cpaD [Rhodopseudomonas palustris CGA009]
gi|192292567|ref|YP_001993172.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
TIE-1]
gi|39650597|emb|CAE29120.1| possible pilus assembly protein cpaD [Rhodopseudomonas palustris
CGA009]
gi|192286316|gb|ACF02697.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Rhodopseudomonas palustris TIE-1]
Length = 242
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +R+ ++ V++ + GRG + + + + + + +PS T
Sbjct: 44 TDYRQRHPIAIREADRTVEVFVGNGRGGLTPVQRAEVAELGQTWLREGTGAIIAEVPSDT 103
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + +++I+ ++ ++G+P ++ + Y TIRL Y AG CG W
Sbjct: 104 PNARAASDTIREIQSVLAANGVPARGVTVKHYRPADPRTFATIRLIYPKVTAVAGPCGLW 163
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
PED+ + K NR + N GCA Q NLAA V NP DL PR TPP +R +
Sbjct: 164 PEDLGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPSDLVQPRPETPPYTARRAVTYDT 223
Query: 241 YR 242
YR
Sbjct: 224 YR 225
>gi|90425198|ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
gi|90107212|gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
Length = 246
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 38 FLRTLMLGQLFF--LLLFYGTSALAYYDEGS----DYRDRYPILMRKVEQIVDIPLLAGR 91
LR L LG L+ G + + GS DYR R+PI +++ +Q + I GR
Sbjct: 9 HLRRLRLGGALVAVCLVLGGCNHTSDEVTGSIVPDDYRQRHPIAIQEADQTLIIFAGTGR 68
Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
G + + + + + + + +P+ T ++ + ++++IR ++ + G+P ++
Sbjct: 69 GGLTGAQRADVASLAQTWLREGTGPIVIDLPTHTPNARAAADSLREIRALLAAQGLPPNA 128
Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAY 206
++ R Y IR++Y +AG CG WP+D+ ++K N+ + N GCA
Sbjct: 129 VTVRDYQPRDTRQFAAIRVNYPRLTATAGPCGLWPDDLGSSSKNHDYFENKPYWNLGCAS 188
Query: 207 QNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
Q NLAA V NP DL PR TP +R S ++YR+
Sbjct: 189 QRNLAAMVDNPADLVQPRGETPAYTARRTNSFEKYRK 225
>gi|90419765|ref|ZP_01227674.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
SI85-9A1]
gi|90335806|gb|EAS49554.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
SI85-9A1]
Length = 244
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + ++ +DIP++ + Y + F ++++ A + +++P+ +
Sbjct: 54 DYRTRHPIVVSEDQEAIDIPIVMSDARLSYANRGRVEHFGDRFRASGADSIQVMLPTGSA 113
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + R +I + + I I + Y A IRL+Y G CG WP
Sbjct: 114 NQYAAERVSHEIVEALRGRYISRDRIFVQPYSAVGAEGPTPIRLTYATLVAKTGPCGRWP 173
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+DM ++ N+N+ N+GCA Q NLAAQ+ +P DL SPR V DA +R + YR+
Sbjct: 174 DDMTDTSE-NKNYFNFGCASQQNLAAQIADPRDLLSPRGVDSIDAGRRTTVLDNYRR 229
>gi|91977986|ref|YP_570645.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
gi|91684442|gb|ABE40744.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
Length = 243
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +++ + V + + GRG + + F + + + + +P+ T
Sbjct: 45 TDYRQRHPIAIQEGDHTVVVFVGNGRGGLTTTQRADVAAFGQGWLREGTGSIIAEVPADT 104
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + +++I+ ++ + G+P + + Y IRL Y AG CG W
Sbjct: 105 PNARAAGETLREIQSLLAAGGVPQRGVIVKPYRPTDPRAFAAIRLIYPKVSAVAGPCGLW 164
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
PED+ + K N+ + N+GCAYQ NLAA V NP DL PR TPP A +R + +
Sbjct: 165 PEDIGPSIKNKGYLDNKPYWNFGCAYQRNLAAMVENPSDLVQPRPETPPYAARRATTFEA 224
Query: 241 YR 242
YR
Sbjct: 225 YR 226
>gi|27376549|ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349690|dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 244
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVS 127
Y+ R+PI + + + + + + RG + + G + ++ + + PS T +
Sbjct: 43 YKQRHPIAIEEQNRSIVVFVGHARGGLTAAQRADVMGLASAWLHEGTGAIHIDAPSGTPN 102
Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187
+ + ++++I+ ++ ++G+P I R Y + + IRL+Y AG CG WPE
Sbjct: 103 ARPVAESMREIQAMLAAAGVPPRGIIARPYQPEDKRFLPPIRLTYSKIAAVAGPCGLWPE 162
Query: 188 DMLGNAKGNRNW------TNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
D +G + N+ W NYGCAYQ NLAA V NP DL PR TP +R + ++Y
Sbjct: 163 D-IGPSMKNKGWFENKEYYNYGCAYQRNLAAMVDNPSDLEQPRPETPSYTTRRTAAFEKY 221
Query: 242 RQ 243
R+
Sbjct: 222 RK 223
>gi|148256958|ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
gi|146409131|gb|ABQ37637.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
Length = 247
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DY+ R+PI + + Q + + + +GRG + Y + G ++ + + +P+ T
Sbjct: 45 DYKIRHPIAVEEGRQSIVVFVGSGRGGLTYQQRADVAGLARSWQREGTGAIVAEVPADTP 104
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + ++I ++ S G+P SI+ R Y D + +RLSY AG CG WP
Sbjct: 105 NARAAADTYREIHAMLTSGGVPSRSITLRHYTPDDPRLLAAVRLSYPKIAAVAGPCGLWP 164
Query: 187 EDMLGNA-----KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+D+ N N+++ N+GCA Q NLAA + NP DL PR +R ++Y
Sbjct: 165 DDLGPNIDNPSYSNNQHYHNFGCATQRNLAAMIDNPADLEQPRAEVAAYTPRRSALFEKY 224
Query: 242 RQ 243
R+
Sbjct: 225 RK 226
>gi|85713506|ref|ZP_01044496.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
gi|85699410|gb|EAQ37277.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
Length = 245
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 5/183 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +++ ++ V+I + RG + + G + + + +P+ T
Sbjct: 42 NDYRLRHPIAIQEADRTVNIFVGNTRGGLTAAQRADVIGLASVWLREGTGAIIAEVPAET 101
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + + K++R ++ ++G+P I R Y+ TIRL+Y AG CG W
Sbjct: 102 RNARAAASSFKEVRSLLTAAGVPPRGIIVRHYNPADPRLFATIRLTYPRIAAVAGPCGVW 161
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
P+D+ + K N+ + N+GCA Q NLA+ + NP DL PR TPP +R + ++
Sbjct: 162 PDDLGPSIKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPPYTARRTEGFEK 221
Query: 241 YRQ 243
YR+
Sbjct: 222 YRK 224
>gi|75674498|ref|YP_316919.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
gi|74419368|gb|ABA03567.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
Length = 246
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI +++ ++ V+I + RG + P + G + + + +P+ T
Sbjct: 44 DYRLRHPIAIQEADRTVNIFIGNTRGGLTAPQRADVVGLASVWLREGTGAIVAEVPTGTG 103
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + + +++R ++ ++G+P I R Y TIRL+Y AG CG WP
Sbjct: 104 NARAAADSFREVRSLLAAAGVPPRGIIVRHYHPADPRLFATIRLTYPRIAAVAGPCGVWP 163
Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+D+ + K N+ + N+GCA Q NLA+ + NP DL PR TP +R +S ++Y
Sbjct: 164 DDIGPSVKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPAYTARRTQSFEKY 223
Query: 242 RQ 243
R+
Sbjct: 224 RK 225
>gi|148258236|ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
gi|146410409|gb|ABQ38915.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
Length = 244
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI +++ + + + GRG + + + + + +P+ T
Sbjct: 42 DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMALAQSWLRQGTGAISADVPTGTP 101
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG WP
Sbjct: 102 NARAAGDSMREIQSLFAAAGVPPHGLTVRNYQPKDPRQMAAIRLSYPKMSATAGPCGVWP 161
Query: 187 EDMLGNAKGNRNW------TNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
+D LG N+NW N+GCAYQ N+AA V NP DL PR TP +R +
Sbjct: 162 DD-LGPTIKNKNWFENKPDWNFGCAYQRNMAAMVDNPADLVQPRAETPSYTTRRTALFDK 220
Query: 241 YRQ 243
YR+
Sbjct: 221 YRK 223
>gi|27375776|ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27348914|dbj|BAC45930.1| pilV [Bradyrhizobium japonicum USDA 110]
Length = 244
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +++ ++ + I + RG + + G + + + + +P +
Sbjct: 41 TDYRQRHPIAVQEAKKSIVIFVGKARGGLSAAQQSDVAGTARDWVREGTGSVVVDVPIGS 100
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
+S + +IR ++ S G+P +I + Y + + TIRLSY AG CG W
Sbjct: 101 ANSRAAATTYHEIRSVLASGGVPSRAIVQHPYRPEDPGLLPTIRLSYSRIAAVAGPCGLW 160
Query: 186 PEDMLGNA-----KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
PED+ + N+ + N GCA Q NLAA + NP DL PR TP +RD + R
Sbjct: 161 PEDVGPSILDPGYNENQPYFNLGCASQRNLAAMIDNPADLEQPRAETPVYTARRDIAFDR 220
Query: 241 YRQ 243
YR+
Sbjct: 221 YRK 223
>gi|316933038|ref|YP_004108020.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris DX-1]
gi|315600752|gb|ADU43287.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Rhodopseudomonas palustris DX-1]
Length = 242
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +R+ ++ V++ + GRG + + + + + + +PS T
Sbjct: 44 TDYRQRHPIAIREADRTVEVFVGNGRGGLTALQRAEVAELGQAWLREGTGAIIAEVPSDT 103
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + +++I+ ++ ++G+P ++ + Y TIRL Y AG CG W
Sbjct: 104 PNARAASDTIREIQSVLSANGVPPRGVTVKHYRPADPRTFATIRLIYPKITAVAGPCGLW 163
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP 228
PED+ + K NR + N GCA Q NLAA V NP DL PR TP
Sbjct: 164 PEDIGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPADLVQPRPETP 211
>gi|86748906|ref|YP_485402.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
gi|86571934|gb|ABD06491.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
Length = 242
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +++ ++ V + + GRG + + F +++ + + +PS T
Sbjct: 44 NDYRQRHPIAIQEADRSVVVFVGNGRGGLTATQRADVAAFGKEWLREGTGSIIAEVPSGT 103
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + +++I+ ++ S G+P + + Y IRL Y AG CG W
Sbjct: 104 PNARAASDTMREIQSLLTSGGVPARGVIVKPYQPADPRSFAAIRLLYPKVAAVAGPCGLW 163
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
PED+ + K N+ + N+GCA Q NLAA V NP DL PR TP +R + +
Sbjct: 164 PEDIGPSIKNKGYLDNKPYWNFGCANQRNLAAMVENPSDLVQPRPETPAYTARRGVTFET 223
Query: 241 YR 242
YR
Sbjct: 224 YR 225
>gi|146342079|ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
gi|146194885|emb|CAL78910.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. ORS278]
Length = 256
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DY+ R+PI + + Q + + + +GRG + P + G ++ + + +P+ T
Sbjct: 54 DYKMRHPIAIEEGRQSIVVFIGSGRGGLTMPQRADVAGLARSWRREGTGAIVADVPAGTP 113
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + + A ++I ++ G+P +I+ R D + IRLSY AG CG W
Sbjct: 114 NARAAQDAYREIHAMLTEGGVPSRAITMRHPTPDDPRQLAVIRLSYPKIAAVAGPCGLWQ 173
Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+D+ N N+++ N+GCA Q NLAA + NP DL PR T +R ++Y
Sbjct: 174 DDLGPNINNPGYSSNQHYQNFGCATQRNLAAMIDNPADLEQPRSETAAYTPRRSALFEKY 233
Query: 242 RQ 243
R+
Sbjct: 234 RK 235
>gi|92116012|ref|YP_575741.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
gi|91798906|gb|ABE61281.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
Length = 246
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
+DYR R+PI +++ + V+I + RG + + G + + + P T
Sbjct: 43 NDYRLRHPIAIQEANRTVNIFVGNTRGGLSASQRADVVGLASVWLREGTGAIVAEAPMGT 102
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++ + +++++R ++ ++G+P I R Y TIRL+Y AG CG W
Sbjct: 103 SNARAAADSLREVRSLLTAAGVPPRGIIVRHYHPADPRLFATIRLTYPQIAAVAGPCGVW 162
Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
PED+ + K N+ + N+GCA Q NLAA V NP DL PR TP +R ++ +
Sbjct: 163 PEDLGPSIKNKGYLDNKPYWNFGCASQRNLAAMVDNPSDLVQPRPETPTYTARRTYALDK 222
Query: 241 YRQ 243
YRQ
Sbjct: 223 YRQ 225
>gi|254473746|ref|ZP_05087141.1| components of type IV pilus [Pseudovibrio sp. JE062]
gi|211957132|gb|EEA92337.1| components of type IV pilus [Pseudovibrio sp. JE062]
Length = 218
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ +V + DIP+ + + + F ++ D + +L+PS +
Sbjct: 21 DYRKRHPIVITEVPENFDIPVSGEARNLNRSLKTAVAAFGQQAIVDGNGFVEVLVPSGSA 80
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ A++R IR + G+ + I R Y +RLS+ K + CG WP
Sbjct: 81 NEAAVRAISPQIRTALKQGGMEANKIVMRSYSVSDMAASAPVRLSFMRIKGAVRDCGNWP 140
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
M+ N + N ++ N+GCA Q NLAA V NP DL PR + P D + + + + R
Sbjct: 141 TGMVVNHQ-NLDYHNFGCASQANLAAVVDNPTDLLRPRTLGPNDPSRTNVVLTKNR 195
>gi|323137426|ref|ZP_08072504.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
sp. ATCC 49242]
gi|322397413|gb|EFX99936.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
sp. ATCC 49242]
Length = 254
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 23/220 (10%)
Query: 39 LRTLMLGQLFFLLLFYGTSA----------LAYYDEGSDYRDRYPILMRKVEQIVDIPLL 88
LR L G++ LLL A +A YD Y DR+P+++ + ++D+
Sbjct: 22 LRALRAGKVLALLLTAPLGACGVNRVLPPPVAPYD----YHDRHPVVLAEAPHVIDLFPS 77
Query: 89 AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP 148
G + Y I+ F+E Y+ + LL P SA+ V +R+ + ++G+
Sbjct: 78 VVHGGVDYTTEGRIKEFVEHYREFGHGQVTLLTPVGAPYSAA---GVSAVRRALAAAGL- 133
Query: 149 VSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCGFWPEDMLGNAK----GNRNWTNYG 203
+I Y IRLS+ + K +G+CG WP D+ N+++ N+G
Sbjct: 134 RGNILVGTYSVTDPRLAAPIRLSFQSLKAKVSGRCGEWPTDLASGTSLQGWENQSYWNFG 193
Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
CA Q L+AQV +P DL PR T D E R ++I R R+
Sbjct: 194 CASQQTLSAQVADPRDLAVPRGETASDIEMRMRAINRVRR 233
>gi|300021855|ref|YP_003754466.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523676|gb|ADJ22145.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Hyphomicrobium denitrificans ATCC 51888]
Length = 245
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
D R+PIL+ + ++++ + AG + + F+++++ A +I +P
Sbjct: 50 DPEQRHPILVSQQPAVLNLHVAAGSEGLTPSQRSRVIDFIDRHRASDAGNSRFVISAPAG 109
Query: 127 SS--ASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
SS A+ A D R++I+ G SSI+ Y A G D +R+SY +CG
Sbjct: 110 SSNEAAAMDAASDTRRLILGGGYADSSIANEAYHAS-GRDA-PLRISYLRYVAEGPECGR 167
Query: 185 -WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
W E+ L A N + N+GC+ Q NLAA V NP DL PR +TP DA +R K ++Y
Sbjct: 168 DWSEN-LARAYQNTPYPNFGCSSQRNLAAMVSNPADLLGPRTMTPSDANRRFKMYEKY 224
>gi|296444394|ref|ZP_06886359.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
trichosporium OB3b]
gi|296258041|gb|EFH05103.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
trichosporium OB3b]
Length = 245
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 18/185 (9%)
Query: 67 DYRDRYPILMRKVEQIVDI-PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
DYRDR+P+++ +D+ P + D I+ F+++Y+ + LL P+ +
Sbjct: 48 DYRDRHPVVLADATTAIDVFP----EQRLDQATVDRIQSFVQRYRRLGHGQITLLAPTGS 103
Query: 126 VSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
++A+ R V +R+ + SG+ V + + DAD V RLS+ K A +C
Sbjct: 104 RNTAT-RAGVDAVRRQLADSGVAGAVYVGTYPVSDADLAAPV---RLSFQGIKAKVADRC 159
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WPED L +A + W N +GCA Q LAAQ+ +P DL SPR TP D E R ++
Sbjct: 160 GQWPED-LASASSLKGWNNDTHWNFGCANQATLAAQIDDPRDLASPRGETPADIESRMRA 218
Query: 238 IQRYR 242
+ + R
Sbjct: 219 LNKVR 223
>gi|218516618|ref|ZP_03513458.1| pilus assembly protein [Rhizobium etli 8C-3]
Length = 102
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 168 IRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVT 227
IRLS+ + +CG WP+D + N N+N+ N+GCA QNNLAAQV NP DL +PR +T
Sbjct: 13 IRLSFTGTTAITTQCGQWPKD-ISNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMT 71
Query: 228 PPDAEQRDKSIQRYR 242
P DA++R+ +IQ YR
Sbjct: 72 PIDAQRRNNAIQEYR 86
>gi|218508708|ref|ZP_03506586.1| pilus assembly protein [Rhizobium etli Brasil 5]
Length = 150
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 12/113 (10%)
Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
S RR RKII +S Y A D IRLS+ + +CG WP+D
Sbjct: 34 SWRREGSRARKIINTS-----------YAAAGAGDAAPIRLSFTGTTAITTQCGQWPKD- 81
Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 82 ISNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 134
>gi|218662338|ref|ZP_03518268.1| pilus assembly protein [Rhizobium etli IE4771]
Length = 79
Score = 81.6 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
+CG WP+D + N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ
Sbjct: 3 QCGQWPKD-ISNDFANQNYYNFGCASQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQE 61
Query: 241 YR 242
YR
Sbjct: 62 YR 63
>gi|154250690|ref|YP_001411514.1| pilus biogenesis lipoprotein CpaD [Parvibaculum lavamentivorans
DS-1]
gi|154154640|gb|ABS61857.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Parvibaculum
lavamentivorans DS-1]
Length = 234
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 48 FFLLLFYGTSALAYYD--EGSDYRDRY--PILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
F L L +G + ++ E + Y Y PI + ++I ++ G+ + + I
Sbjct: 16 FALALAFGVAGCGGFNGAEQAHYDANYTHPISVEADVATLNIDVVPGQPGVTSTDRNAIA 75
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
GF Y+ L + PS + ++ + A+ D+R+++ G+ + +S Y A
Sbjct: 76 GFAAGYRQRGHGPLTISTPSGSPNAGAAAVALSDVREVLSEHGVGGNDLSYTPYRASGTD 135
Query: 164 DVDTIRLSY--FASKPSAGKCGFW-------PEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214
+ + LS+ + +KP+A CG W P + L N+GC+ QNNLAA V
Sbjct: 136 NSAPLILSFKRYVAKPTA--CGDWSGSYSYDPSNGL--------LPNHGCSTQNNLAAMV 185
Query: 215 VNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+P DL +PR ++P DA +R +++YR
Sbjct: 186 ADPGDLIAPRNMSPADAARRGTVLEKYR 213
>gi|188581661|ref|YP_001925106.1| pilus biogenesis lipoprotein CpaD [Methylobacterium populi BJ001]
gi|179345159|gb|ACB80571.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium populi BJ001]
Length = 247
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P S
Sbjct: 42 DVRTRHPIVLADADRSLDV-FPTGIGHIDPRQRADIEAFLVEYRRYGRGILVVELPRGVS 100
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ S+ R +IR++ G+P + I Y +RLS+ + A KC
Sbjct: 101 PGLA-GSVERTGAEIRRLAAEMGVPAAGIRVANYPVANPTLASPLRLSFQRMQAKVADKC 159
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + NW+N GCA Q NLAAQV +P+DL R D R K
Sbjct: 160 GLWPRD-LGVSDLRANWSNEPTWNLGCATQANLAAQVADPIDLVRGRPEGRIDTVLRTKD 218
Query: 238 IQRYRQ 243
+ + R+
Sbjct: 219 LGQLRE 224
>gi|163851904|ref|YP_001639947.1| pilus biogenesis lipoprotein CpaD [Methylobacterium extorquens PA1]
gi|163663509|gb|ABY30876.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium extorquens PA1]
Length = 248
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P S
Sbjct: 43 DVRTRHPIVLADADRTLDV-FPTGIGHIDPRQRADIEAFLGEYRRYGRGILLVELPRGVS 101
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ + R IR++ G+P + + Y +RLS+ + A KC
Sbjct: 102 PALA-GPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKC 160
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + NW+N GCA Q+N+AAQV +P+DL R D R K
Sbjct: 161 GLWPRD-LGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKD 219
Query: 238 IQRYRQ 243
+ + R+
Sbjct: 220 LGQLRE 225
>gi|218530655|ref|YP_002421471.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
chloromethanicum CM4]
gi|218522958|gb|ACK83543.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
chloromethanicum CM4]
Length = 248
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P S
Sbjct: 43 DVRTRHPIVLADADRTLDV-FPTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ + R IR++ G+P + + Y +RLS+ + A KC
Sbjct: 102 PALA-GPVERTGASIRRLATEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKC 160
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + NW+N GCA Q+N+AAQV +P+DL R D R K
Sbjct: 161 GLWPRD-LGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKD 219
Query: 238 IQRYRQ 243
+ + R+
Sbjct: 220 LGQLRE 225
>gi|254561622|ref|YP_003068717.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
gi|254268900|emb|CAX24861.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
Length = 248
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P S
Sbjct: 43 DVRTRHPIVLADADRTLDV-FPTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ + R IR++ G+P + + Y +RLS+ + A KC
Sbjct: 102 PALA-GPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKC 160
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + NW+N GCA Q+N+AAQV +P+DL R D R K
Sbjct: 161 GLWPRD-LGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKD 219
Query: 238 IQRYRQ 243
+ + R+
Sbjct: 220 LGQLRE 225
>gi|240139027|ref|YP_002963502.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
gi|240008999|gb|ACS40225.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
Length = 248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P S
Sbjct: 43 DVRTRHPIVLADADRTLDV-FPTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ + R IR++ G+P + + Y +RLS+ + A KC
Sbjct: 102 PALA-GPVERTGASIRRLAAEMGVPAAGVRVAAYPIANLTLASPLRLSFQRMQAKVADKC 160
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + NW+N GCA Q+N+AAQV +P+DL R D R K
Sbjct: 161 GLWPRD-LGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKD 219
Query: 238 IQRYRQ 243
+ + R+
Sbjct: 220 LGQLRE 225
>gi|167648151|ref|YP_001685814.1| pilus biogenesis lipoprotein CpaD [Caulobacter sp. K31]
gi|167350581|gb|ABZ73316.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
sp. K31]
Length = 234
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNR 197
+R+ +I+ G P +S+ YDA G+ +++ + CG W + + + N+
Sbjct: 110 VRQRLIAMGAPPASVRVVGYDAGAGLAAAPLKVGFLRYHAQVPTCGGW--ENIAATRDNK 167
Query: 198 NWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ N+GCA N+AAQV NP DL SPR TP D+ +RD + +YR+
Sbjct: 168 PYDNFGCAVTANMAAQVANPEDLLSPRATTPVDSARRDTVLGKYRK 213
>gi|220922780|ref|YP_002498082.1| pilus biogenesis lipoprotein CpaD [Methylobacterium nodulans ORS
2060]
gi|219947387|gb|ACL57779.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium nodulans ORS 2060]
Length = 246
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
Query: 71 RYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP-SPTVSSA 129
R+PI++ + +D+ + G G + D I FL +Y+ VL + +P V
Sbjct: 47 RHPIVLADAPRSLDV-FVTGIGHVDPRQSDDIDAFLLEYRRYGRGVLVIEVPRGAQVPGP 105
Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCGFWPED 188
++ R +R+ + G+P + Y +R+S+ + +G CG WP+D
Sbjct: 106 AVARTAALLRERAVGRGVPARELVVAPYAVVNPAVAAPVRMSFQRMQARVSGACGLWPQD 165
Query: 189 MLGNAKG----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ + G N ++ NYGC+ + N A+Q+ +P+DL R D R + I+ R
Sbjct: 166 LGVSEPGFELRNESFWNYGCSTRANFASQIADPVDLVRGRQEGRIDTVSRTQDIESLR 223
>gi|295690797|ref|YP_003594490.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
segnis ATCC 21756]
gi|295432700|gb|ADG11872.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
segnis ATCC 21756]
Length = 229
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTI-RLSYFASKPSAGKCG-FWPEDMLGNAKG 195
+R+ +I G P + + RI AD + + + R+ + + KCG W + L +
Sbjct: 105 VRERLIFLGAPAAHV--RIVGADPSLPPEPVLRVGFVRYEAEVPKCGQAW--ESLTATRD 160
Query: 196 NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
N+ + N+GCA N+AAQV NP DL PR +TP DA +RD + +YR+
Sbjct: 161 NKAYENFGCAVAANMAAQVANPEDLVRPRDMTPADAGRRDTVMGKYRR 208
>gi|23011548|ref|ZP_00051876.1| hypothetical protein Magn03006165 [Magnetospirillum magnetotacticum
MS-1]
Length = 248
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---S 123
D R R+PI++ ++ +D+ G G + + FL +Y+ +L + +P S
Sbjct: 43 DVRTRHPIVLADADRTLDV-FPTGVGHLDPRQRADLEAFLVEYRRYGRGLLLVEMPRGVS 101
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ + R IR++ G+P Y +RLS+ + A +C
Sbjct: 102 PALA-GPVERTGAAIRRLAAEMGVPAGGFRIGDYPIANPALAAPLRLSFQRMQAKVADQC 160
Query: 183 GFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP D LG + +W+N +GCA + N AAQV +P+DL R D +R +
Sbjct: 161 GLWPRD-LGASDLRADWSNEPTWNFGCATRANFAAQVADPVDLVRGRPEGRIDTIRRTQD 219
Query: 238 IQRYRQ 243
I + R+
Sbjct: 220 IGQLRE 225
>gi|83859358|ref|ZP_00952879.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
gi|83852805|gb|EAP90658.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
Length = 218
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159
D I +YK L + P ++ + A+ + R + +G+ IS Y+A
Sbjct: 55 DVIEAVAAEYKARGHGPLVISYPQNAGNADAAIGAIAEARTRLYEAGLDWRQISGGAYEA 114
Query: 160 DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
G + S+ + A +C DM + + N++W +GCA NNLA V +P D
Sbjct: 115 G-GQASAPVIFSFTRYQAVAPECSTAWNDM-AHMRANQDWPRFGCATANNLANMVADPRD 172
Query: 220 LFSPRMVTPPDAEQRDKSIQRYRQ 243
L +PR V PD+ +R + RYRQ
Sbjct: 173 LVAPRGVDAPDSARRQTVLDRYRQ 196
>gi|170750190|ref|YP_001756450.1| pilus biogenesis lipoprotein CpaD [Methylobacterium radiotolerans
JCM 2831]
gi|170656712|gb|ACB25767.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium radiotolerans JCM 2831]
Length = 247
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS-- 123
+DYR R+PI++ + +D+ G G + + F+ +Y+ L + +P
Sbjct: 42 TDYRARHPIVLTDGTRSLDV-FPTGTGHLDPRQATDVDAFMLEYRRYGRGSLLMQVPQGV 100
Query: 124 PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
P ++ R + ++ +G+ I+ Y IRLS+ + A C
Sbjct: 101 PADQVVAVERTASVLGRLGTQNGVNGREIAVTGYAVAAPTLASPIRLSFQRMQAKVADAC 160
Query: 183 GFWPEDMLGNAK-----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
G WP+D LG + NR N GCA Q+N+AAQV +P+DL R E R +
Sbjct: 161 GLWPQD-LGTSNFAIDYNNRPSWNLGCATQSNVAAQVADPVDLVRGR------PEGRIDT 213
Query: 238 IQRYR 242
++R R
Sbjct: 214 VKRVR 218
>gi|218670939|ref|ZP_03520610.1| pilus assembly protein [Rhizobium etli GR56]
Length = 170
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P +
Sbjct: 54 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 113
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
+SA+ + +R + S GI S I Y A D IRLS+ + +CG
Sbjct: 114 NSAAAHQLRNHVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAVTTQCG 170
>gi|170740620|ref|YP_001769275.1| pilus biogenesis lipoprotein CpaD [Methylobacterium sp. 4-46]
gi|168194894|gb|ACA16841.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium sp. 4-46]
Length = 249
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 9/186 (4%)
Query: 64 EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP- 122
E + + R+PI + + +D+ + G G + D + FL +++ VL + +P
Sbjct: 43 EPASVQARHPIALADAPRNLDV-FVTGMGHVDPRQADDVDAFLLEFRRYGRGVLVIEVPR 101
Query: 123 SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGK 181
++ R +R+ ++ G+ + Y +RLS+ +
Sbjct: 102 GGQAPGPAVARTAALLRERALARGVSARELVVAPYPVANASVAAPVRLSFQRMQAKVTST 161
Query: 182 CGFWPEDMLGNAK-----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDK 236
CG WP D LG + NR N+GCAYQ+N A Q+ +P+DL R D R +
Sbjct: 162 CGLWPND-LGVSDPAVDVSNRTHWNHGCAYQSNFARQIADPVDLVRGRQEGRIDTISRTQ 220
Query: 237 SIQRYR 242
I+ R
Sbjct: 221 DIESLR 226
>gi|254420868|ref|ZP_05034592.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
sp. BAL3]
gi|196187045|gb|EDX82021.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
sp. BAL3]
Length = 205
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 99 HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158
H +R +++ A V+ + P+ S A+ + D R +
Sbjct: 44 HAALRDLAQRFAAAGAGVIVIEAPAGEDSVAA--KTAFDTRAAL---------------- 85
Query: 159 ADYGMDVDTIRL-SYFASKPSAG-------------KCGF-WPEDMLGNAKGNRNWTNYG 203
A G+D + +R+ SY P A +CG W L N + +N+G
Sbjct: 86 AQIGLDPNRLRVVSYAGPDPRAPVLVGFETVQAAVPRCGAAW--GNLSRTGDNMSGSNFG 143
Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
CA NLAAQ+ +P D+ +PR +TPP+A +R RYRQ
Sbjct: 144 CAVTANLAAQIADPRDIAAPRALTPPEAGRRSVVFDRYRQ 183
>gi|16127174|ref|NP_421738.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
gi|221235975|ref|YP_002518412.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
gi|7208426|gb|AAF40193.1|AF229646_5 CpaD [Caulobacter crescentus CB15]
gi|13424570|gb|AAK24906.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
gi|220965148|gb|ACL96504.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
Length = 225
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 181 KCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
KCG W + L + N + N+GCA N+AAQV NP DL PR +TP D +RD +
Sbjct: 143 KCGQRW--ENLAATRDNTVYDNFGCAMAANIAAQVANPEDLMRPRDMTPADTGRRDTVLG 200
Query: 240 RYRQ 243
+YR+
Sbjct: 201 KYRR 204
>gi|329847254|ref|ZP_08262282.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
[Asticcacaulis biprosthecum C19]
gi|328842317|gb|EGF91886.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
[Asticcacaulis biprosthecum C19]
Length = 219
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 170 LSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPP 229
+SY AS P G+ W + L + N N+GCA NLAAQV +P DL P TP
Sbjct: 129 VSYRASVPGCGQT--W--ENLAATRKNTPHANFGCAITANLAAQVADPRDLVDPATATPS 184
Query: 230 DAEQRDKSIQRYRQ 243
DA ++ + +YR+
Sbjct: 185 DAGRKSVVLDKYRR 198
>gi|302381755|ref|YP_003817578.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
subvibrioides ATCC 15264]
gi|302192383|gb|ADK99954.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
subvibrioides ATCC 15264]
Length = 222
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 32/146 (21%)
Query: 128 SASIRRAVKDIRKIIISSGIPV-------------SSISERIYDADYGMDVDTIRL---S 171
SA+ RA++DI + G PV S ++ RI A V + ++ +
Sbjct: 57 SANQTRALEDIAGRFYAEGAPVLRIEAPSGNDPVASEMAWRIKGALEASGVSSYQVQVVT 116
Query: 172 YFASKPSAG-------------KCGF-WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNP 217
Y A P A +CG W L N + N+GCA NLAAQ+ NP
Sbjct: 117 YVAPDPRAPVLVGFDTVRAVVPQCGTGWTN--LTRTGSNAGYGNFGCAVNANLAAQIANP 174
Query: 218 LDLFSPRMVTPPDAEQRDKSIQRYRQ 243
D+ PR +TP DA +R YRQ
Sbjct: 175 RDIVQPRTMTPVDAGRRAVVFDNYRQ 200
>gi|114568971|ref|YP_755651.1| pilus biogenesis lipoprotein CpaD [Maricaulis maris MCS10]
gi|114339433|gb|ABI64713.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Maricaulis
maris MCS10]
Length = 227
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 108 KYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDT 167
+YK L + P + + A+ + R GI I+ YDA + +
Sbjct: 70 EYKARGHGPLVISYPQGAGNEDAAIGAIAEARSFFYEQGIDWRVIAGGAYDARGRQNGEL 129
Query: 168 IR--LSYFASKPSAGKC-GFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR 224
I Y A P+ +C G W D + N++ TN+GCA NLAA V +P DL +PR
Sbjct: 130 IFSFTRYEAVAPA--ECDGSW--DQMALEFDNQHHTNFGCALAVNLAAMVADPRDLVAPR 185
Query: 225 MVTPPDAEQRDKSIQRYRQ 243
+ D +R I+ YR+
Sbjct: 186 DMEAGDTGRRQTVIEGYRE 204
>gi|315497464|ref|YP_004086268.1| pilus (caulobacter type) biogenesis lipoprotein cpad [Asticcacaulis
excentricus CB 48]
gi|315415476|gb|ADU12117.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Asticcacaulis
excentricus CB 48]
Length = 228
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ RA IR + + V ++S+ + G D + L + C
Sbjct: 93 TANTPDALRAGAAIRAYLNDHQVSVHAVSQTTAE---GQPADVVSLITREYRAVVNDCNL 149
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
E+ L + N N GCA NLAAQ+ +P D+ +P+ TP DA +R I +YR+
Sbjct: 150 EWEN-LAATRHNAAPQNLGCAINANLAAQIDDPRDIAAPQPATPGDAGRRTVIIDKYRK 207
>gi|304320648|ref|YP_003854291.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
HTCC2503]
gi|303299550|gb|ADM09149.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
HTCC2503]
Length = 212
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 4/169 (2%)
Query: 70 DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSA 129
+R+PI + + + IP+ + R + + F+ Y+ + + P+ T
Sbjct: 32 ERHPITVDQQAVTLTIPIDSTRSGLSRGDLQQLDRFVSAYRTKGYGPITVTAPAGTGRDL 91
Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
+R + SG+ + I + +V + Y A P +CG + +
Sbjct: 92 EANETAAAVRAALNDSGVAYADIQGASVTSSTAKEVMVSFVRYVAQGP---QCGVFDNER 148
Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
+ N + N+GC+ Q+NLAA + +P DL + T D K I
Sbjct: 149 AARFR-NLSHPNFGCSSQHNLAAMIADPRDLTRAQSTTTRDGHLASKPI 196
>gi|254293215|ref|YP_003059238.1| type IV pili component-like protein [Hirschia baltica ATCC 49814]
gi|254041746|gb|ACT58541.1| Type IV pili component-like protein [Hirschia baltica ATCC 49814]
Length = 218
Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 105 FLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD 164
F+E + +D + L P S RA+ IR I+ +G+ +I+ Y G +
Sbjct: 67 FVENFADDGYGPIVLSAPD---GSREAVRAITSIRSILSRAGVLPDNITVGGYQPAAG-N 122
Query: 165 VDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR 224
+ L+Y + + C E + + N + ++GCA N+A + P DL R
Sbjct: 123 AAPLVLAYKSYQAHVPGCSTVNEHDWTDLRSNSSVGSFGCAVNENIAMMIAKPGDLLGER 182
Query: 225 MVTPPDAEQRDKSIQRYR 242
+ D+ ++ ++YR
Sbjct: 183 KIGDGDSSRQLTVYEKYR 200
>gi|103486616|ref|YP_616177.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
gi|98976693|gb|ABF52844.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
Length = 213
Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
S+ + RA+ + R +++S +PV++ + + D IR+ + S C W
Sbjct: 88 SAQATVRAMVERRGLLLSKDVPVTTGA--VPDGH-------IRVVVTRASASVPGCPDWN 138
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
N+ N +NYGCA +NLAA V +P DL T D ++IQ YR
Sbjct: 139 SKSSLNSL-NATSSNYGCATNSNLAAMVADPNDLIKGTRDTGHDPVAATRAIQTYR 193
>gi|149186256|ref|ZP_01864570.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
gi|148830287|gb|EDL48724.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
Length = 217
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 127 SSASIRRAVKDIRK---IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
+S ++R V +I I+++ G PV++ + + R+ S S C
Sbjct: 88 NSLAVRDDVAEIASRYGILVAEGAPVTAGN---------LGPGQARVVITRSTASVPGCP 138
Query: 184 FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD-AEQRDKSIQRYR 242
W + N GN NYGCA +NLA+ V NP DL + T K+I+ YR
Sbjct: 139 DWSHTVEAN-DGNATNPNYGCATYSNLASMVANPEDLVQGQQGTGETIVTTSTKAIEAYR 197
>gi|84386796|ref|ZP_00989821.1| putative lipoprotein [Vibrio splendidus 12B01]
gi|84378324|gb|EAP95182.1| putative lipoprotein [Vibrio splendidus 12B01]
Length = 207
Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 136 KDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG 195
+ +R +I SG+ S IS A D+ TI + + +K +A G P L NA
Sbjct: 83 EKVRLRLIESGLYPSQISVSDTAAQGKGDI-TIFVESYRAKVTACDAGKTPRTTL-NAY- 139
Query: 196 NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
R N+GCA N LA V NP DL + P D+ Q K++
Sbjct: 140 -RTQRNFGCANANALAQMVANPKDLI---VGQPIDSAQGQKAV 178
>gi|114798148|ref|YP_761690.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
gi|114738322|gb|ABI76447.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
Length = 236
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 2/187 (1%)
Query: 56 TSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS 115
T+ A Y E S D PI + K + +++ + A GE+ I+ F+ Y
Sbjct: 30 TAVPAAYLETSPL-DLNPIKVEKRTEFLEVSIDAYAGELSSSDRARIQDFMRGYVRRGHG 88
Query: 116 VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFAS 175
L L +P + + AV + R I G+ IS + + + I L+Y +
Sbjct: 89 PLVLSMPQVSSNPQLAVAAVAEARAIAWDMGVEYQEISGTAHGSGSSVSEPMI-LAYQSY 147
Query: 176 KPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
+ A C N N GC+ + NLAA +++P DL R + D +R+
Sbjct: 148 EAIAPNCPPKSTVDFSNIDSNNQMETLGCSVRTNLAAMIIDPADLLGNRPLDRSDLARRE 207
Query: 236 KSIQRYR 242
++++R
Sbjct: 208 VILEKFR 214
>gi|285018613|ref|YP_003376324.1| hypothetical protein XALc_1843 [Xanthomonas albilineans GPE PC73]
gi|283473831|emb|CBA16333.1| hypothetical protein XALc_1843 [Xanthomonas albilineans]
Length = 147
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL--------F 118
D+R + + R ++IPL + P+ T++ LE++ DS L
Sbjct: 29 DFRGSWKPVNRFSASTMEIPLYSSYVYQAVPVDGTLKTMLERWSKDSNMELSYGIQSDYT 88
Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
L P +++ SI++AV ++ I S G+ VS+ RI
Sbjct: 89 LYAPVAKINTVSIQQAVAELSVIYESEGVTVSAAGNRI 126
>gi|148557760|ref|YP_001265342.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
gi|148502950|gb|ABQ71204.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
Length = 252
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 200 TNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+NYGCA + LAA V NP DL + +A+ K+I+ +R
Sbjct: 191 SNYGCAINSTLAAMVANPEDLVKGQAARGSNADTATKAIRIWRN 234
>gi|296284553|ref|ZP_06862551.1| hypothetical protein CbatJ_13041 [Citromicrobium bathyomarinum
JL354]
Length = 214
Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 182 CGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLF 221
C W +D GN N NYGCA +N AA V NP DL
Sbjct: 135 CPNWTDDGDGNFA-NATSRNYGCATNSNYAAMVANPEDLV 173
>gi|150398913|ref|YP_001322680.1| succinyl-CoA synthetase subunit alpha [Methanococcus vannielii SB]
gi|150011616|gb|ABR54068.1| succinyl-CoA synthetase, alpha subunit [Methanococcus vannielii SB]
Length = 287
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 86 PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI-IIS 144
P AG+ P++DT+ +EKY + +ASV+F IP+P V A+ I + II+
Sbjct: 40 PGKAGQDVYGIPVYDTVLETVEKY-DVNASVIF--IPAPFVKDAAYEAIDAGIELVTIIT 96
Query: 145 SGIPVSSISERI-YDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190
+P+ + + Y +G+++ AS P GK G P ++L
Sbjct: 97 EHVPIQDSMDIVSYGKKHGVNIIGPNTPGLAS-PKVGKLGIIPMNIL 142
>gi|251789647|ref|YP_003004368.1| pilus biogenesis lipoprotein CpaD [Dickeya zeae Ech1591]
gi|247538268|gb|ACT06889.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Dickeya zeae
Ech1591]
Length = 223
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA Q+NLA V P DL R + D SI+RY+Q
Sbjct: 169 GCANQSNLAQMVAEPRDLIQARSLDAADGVNMVNSIERYQQ 209
>gi|148976306|ref|ZP_01813030.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
gi|145964400|gb|EDK29655.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
Length = 195
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVD---TIRLSYFASKPSAGKCGFWPEDMLG 191
++ +R +I SG+ S +I+ AD + TI + + +K +A G P +
Sbjct: 70 IEKVRLHLIESGLYPS----QIWVADEATEGKGDITILVESYRAKVTACDAGKTPRTTVN 125
Query: 192 NAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ RN +GCA N LA V NP DL + ++ ++ SI+ Y
Sbjct: 126 AYRTQRN---FGCANANALAQMVANPKDLIVGQPISGTQGQKAVSSIENY 172
>gi|85373130|ref|YP_457192.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
gi|84786213|gb|ABC62395.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
Length = 188
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 35/165 (21%)
Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYK---NDSASVLFLLIPSP 124
Y + P++ R +D+ G G + P + G+ E D S+ ++
Sbjct: 8 YSTKQPVVER-TNYTLDV--RTGPGGLSIPEQQRLSGWFEAMNLRYGDRVSIEDPML--- 61
Query: 125 TVSSASIRRAVKDI---RKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGK 181
S S + A+ + I++S G PV+S Y ++ + R+ S S
Sbjct: 62 ---SGSTKDAISQLAGRHGILVSDGAPVTS--------GY-VEPGSARVVITRSSASVPG 109
Query: 182 CGFWPEDMLGNAKGNRNWTN-----YGCAYQNNLAAQVVNPLDLF 221
C W + K N+TN YGCA NLAA V +P DL
Sbjct: 110 CPDW------SVKSEMNYTNGTHPGYGCAINGNLAAMVADPEDLV 148
>gi|227326303|ref|ZP_03830327.1| putative lipoprotein [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 228
Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA QNNLA V P DL + + D SI+RY +
Sbjct: 174 GCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214
>gi|227114877|ref|ZP_03828533.1| putative lipoprotein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 228
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA QNNLA V P DL + + D SI+RY +
Sbjct: 174 GCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214
>gi|261820215|ref|YP_003258321.1| pilus biogenesis lipoprotein CpaD [Pectobacterium wasabiae WPP163]
gi|261604228|gb|ACX86714.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Pectobacterium wasabiae WPP163]
Length = 228
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA QNNLA V P DL + + D SI+RY +
Sbjct: 174 GCATQNNLAMMVAEPRDLIQAKALDNADGVAAVNSIERYHK 214
Searching..................................................done
Results from round 2
>gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547836|gb|ACT57199.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats.
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA
Sbjct: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL
Sbjct: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG
Sbjct: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR
Sbjct: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
Query: 241 YRQ 243
YRQ
Sbjct: 241 YRQ 243
>gi|315121890|ref|YP_004062379.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495292|gb|ADR51891.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 224
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 141/243 (58%), Positives = 188/243 (77%), Gaps = 23/243 (9%)
Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
MM + MI +FGG+CFK L + FFL Q+ FLLLF G + LA
Sbjct: 1 MMRDIMIKEIFGGMCFKRLVS---------------FFLM-----QISFLLLFCGNNVLA 40
Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
+DYRDRYPI+M+KVE+ +DIPLL+GRG++ ++DTI+GF+++YK +S SV+F+L
Sbjct: 41 ---NQNDYRDRYPIVMKKVEKSLDIPLLSGRGKLPSDMYDTIKGFIDRYKQNSTSVIFIL 97
Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
IP+PT+SS +I+ A+K+IR+ IIS+GIP SS+SER YDADY +D+DTIRLSYFAS+PSAG
Sbjct: 98 IPTPTISSHAIQDALKNIRRFIISNGIPSSSLSERSYDADYELDIDTIRLSYFASRPSAG 157
Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
KCGFWPED+LG++ N NW+NYGC+YQNNLAAQ+VNP+DLF+PR +TPPDA RD+SI R
Sbjct: 158 KCGFWPEDILGSSLENSNWSNYGCSYQNNLAAQIVNPMDLFAPRSMTPPDAVHRDRSIHR 217
Query: 241 YRQ 243
Y++
Sbjct: 218 YQE 220
>gi|90425198|ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
gi|90107212|gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
Length = 246
Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 38 FLRTLMLGQLFF--LLLFYGTSALAYYDEGS----DYRDRYPILMRKVEQIVDIPLLAGR 91
LR L LG L+ G + + GS DYR R+PI +++ +Q + I GR
Sbjct: 9 HLRRLRLGGALVAVCLVLGGCNHTSDEVTGSIVPDDYRQRHPIAIQEADQTLIIFAGTGR 68
Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
G + + + + + + + +P+ T ++ + ++++IR ++ + G+P ++
Sbjct: 69 GGLTGAQRADVASLAQTWLREGTGPIVIDLPTHTPNARAAADSLREIRALLAAQGLPPNA 128
Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAY 206
++ R Y IR++Y +AG CG WP+D+ ++K N+ + N GCA
Sbjct: 129 VTVRDYQPRDTRQFAAIRVNYPRLTATAGPCGLWPDDLGSSSKNHDYFENKPYWNLGCAS 188
Query: 207 QNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
Q NLAA V NP DL PR TP +R S ++YR+
Sbjct: 189 QRNLAAMVDNPADLVQPRGETPAYTARRTNSFEKYRK 225
>gi|114705455|ref|ZP_01438363.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540240|gb|EAU43360.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 230
Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 61/209 (29%), Positives = 107/209 (51%), Gaps = 5/209 (2%)
Query: 38 FLRTLMLGQLFFLLLFYGTSALAYYDE----GSDYRDRYPILMRKVEQIVDIPLLAGRGE 93
+R L L + L G ++ E DYR R+PI++ + ++ +DIP++ +
Sbjct: 5 IIRPLATASLVGIALALGACGNVHHIEVGSVPDDYRTRHPIVVSEADEAIDIPVVTSDQK 64
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ I F +++ A + +L+P + ++ + + + ++ +G+ I
Sbjct: 65 LAMSDSGRIEDFAHRFRRSGADTMTVLVPYGSRNAVAASSISHEAIRTLMKAGVRREQIV 124
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
+ Y A + IRL++ G CG WPED L + N+N+ N+GCA Q NLAAQ
Sbjct: 125 MQSYAAHDALGPTPIRLTFSTLVAQTGPCGRWPED-LNSTHENKNYANFGCATQQNLAAQ 183
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ +P DL SPR + P D E+RD+ I++YR
Sbjct: 184 IADPRDLLSPRGMGPVDGERRDQVIEKYR 212
>gi|86748906|ref|YP_485402.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
gi|86571934|gb|ABD06491.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
Length = 242
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 39 LRTLMLGQLFF--LLLFYGTSALAYYDE-----GSDYRDRYPILMRKVEQIVDIPLLAGR 91
+R L G L + + DE +DYR R+PI +++ ++ V + + GR
Sbjct: 10 IRGLTCGAALVAVSLSMGACTHTSANDEVTASVPNDYRQRHPIAIQEADRSVVVFVGNGR 69
Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
G + + F +++ + + +PS T ++ + +++I+ ++ S G+P
Sbjct: 70 GGLTATQRADVAAFGKEWLREGTGSIIAEVPSGTPNARAASDTMREIQSLLTSGGVPARG 129
Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAY 206
+ + Y IRL Y AG CG WPED+ + K N+ + N+GCA
Sbjct: 130 VIVKPYQPADPRSFAAIRLLYPKVAAVAGPCGLWPEDIGPSIKNKGYLDNKPYWNFGCAN 189
Query: 207 QNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
Q NLAA V NP DL PR TP +R + + YR
Sbjct: 190 QRNLAAMVENPSDLVQPRPETPAYTARRGVTFETYR 225
>gi|75674498|ref|YP_316919.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
gi|74419368|gb|ABA03567.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
Length = 246
Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 95/184 (51%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI +++ ++ V+I + RG + P + G + + + +P+
Sbjct: 42 PDDYRLRHPIAIQEADRTVNIFIGNTRGGLTAPQRADVVGLASVWLREGTGAIVAEVPTG 101
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + + +++R ++ ++G+P I R Y TIRL+Y AG CG
Sbjct: 102 TGNARAAADSFREVRSLLAAAGVPPRGIIVRHYHPADPRLFATIRLTYPRIAAVAGPCGV 161
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WP+D+ + K N+ + N+GCA Q NLA+ + NP DL PR TP +R +S +
Sbjct: 162 WPDDIGPSVKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPAYTARRTQSFE 221
Query: 240 RYRQ 243
+YR+
Sbjct: 222 KYRK 225
>gi|91977986|ref|YP_570645.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
gi|91684442|gb|ABE40744.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
Length = 243
Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 8/229 (3%)
Query: 19 LANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRK 78
+ +M+ + +F +L LG G +DYR R+PI +++
Sbjct: 1 MTSMKPARATRGLVFGAALTCVSLSLG---ACTHTRGAGDDVTASISTDYRQRHPIAIQE 57
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDI 138
+ V + + GRG + + F + + + + +P+ T ++ + +++I
Sbjct: 58 GDHTVVVFVGNGRGGLTTTQRADVAAFGQGWLREGTGSIIAEVPADTPNARAAGETLREI 117
Query: 139 RKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG--- 195
+ ++ + G+P + + Y IRL Y AG CG WPED+ + K
Sbjct: 118 QSLLAAGGVPQRGVIVKPYRPTDPRAFAAIRLIYPKVSAVAGPCGLWPEDIGPSIKNKGY 177
Query: 196 --NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
N+ + N+GCAYQ NLAA V NP DL PR TPP A +R + + YR
Sbjct: 178 LDNKPYWNFGCAYQRNLAAMVENPSDLVQPRPETPPYAARRATTFEAYR 226
>gi|150398542|ref|YP_001329009.1| pilus biogenesis lipoprotein CpaD [Sinorhizobium medicae WSM419]
gi|150030057|gb|ABR62174.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
medicae WSM419]
Length = 242
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 77/199 (38%), Positives = 112/199 (56%), Gaps = 3/199 (1%)
Query: 47 LFFLLLFYGTSA---LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
L G + LA DYR R+PI++ + E+ +DIP+ +G + D IR
Sbjct: 30 AIAFALLAGCANKDRLATGALPDDYRTRHPIVLTEGERTIDIPVASGDTRLTQGTRDVIR 89
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
GF +Y+N S+ V+ +++P +V+ + + K+IR+++ SG+ I E YDA
Sbjct: 90 GFAAEYRNASSGVVQIMLPRGSVNGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTG 149
Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
D IRLSY A CG WPED+ N NRN+ N+GCA Q+NLAAQ+ NP DL P
Sbjct: 150 DAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGP 209
Query: 224 RMVTPPDAEQRDKSIQRYR 242
R ++P DAEQR + I +R
Sbjct: 210 RRMSPIDAEQRGQVIDSWR 228
>gi|39936741|ref|NP_949017.1| pilus assembly protein cpaD [Rhodopseudomonas palustris CGA009]
gi|192292567|ref|YP_001993172.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
TIE-1]
gi|39650597|emb|CAE29120.1| possible pilus assembly protein cpaD [Rhodopseudomonas palustris
CGA009]
gi|192286316|gb|ACF02697.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Rhodopseudomonas palustris TIE-1]
Length = 242
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 12/215 (5%)
Query: 40 RTLMLGQLF--FLLLFYGTSALAYYDE-----GSDYRDRYPILMRKVEQIVDIPLLAGRG 92
R L LG F L + + E +DYR R+PI +R+ ++ V++ + GRG
Sbjct: 11 RGLGLGAALIGFSLSLGACTHTSREVEVTQSIPTDYRQRHPIAIREADRTVEVFVGNGRG 70
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ + + + + + +PS T ++ + +++I+ ++ ++G+P +
Sbjct: 71 GLTPVQRAEVAELGQTWLREGTGAIIAEVPSDTPNARAASDTIREIQSVLAANGVPARGV 130
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAYQ 207
+ + Y TIRL Y AG CG WPED+ + K NR + N GCA Q
Sbjct: 131 TVKHYRPADPRTFATIRLIYPKVTAVAGPCGLWPEDLGPSIKNKGYYDNRPYWNLGCANQ 190
Query: 208 NNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NLAA V NP DL PR TPP +R + YR
Sbjct: 191 RNLAAMVENPSDLVQPRPETPPYTARRAVTYDTYR 225
>gi|85713506|ref|ZP_01044496.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
gi|85699410|gb|EAQ37277.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
Length = 245
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
+DYR R+PI +++ ++ V+I + RG + + G + + + +P+
Sbjct: 41 PNDYRLRHPIAIQEADRTVNIFVGNTRGGLTAAQRADVIGLASVWLREGTGAIIAEVPAE 100
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + + K++R ++ ++G+P I R Y+ TIRL+Y AG CG
Sbjct: 101 TRNARAAASSFKEVRSLLTAAGVPPRGIIVRHYNPADPRLFATIRLTYPRIAAVAGPCGV 160
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WP+D+ + K N+ + N+GCA Q NLA+ + NP DL PR TPP +R + +
Sbjct: 161 WPDDLGPSIKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPPYTARRTEGFE 220
Query: 240 RYRQ 243
+YR+
Sbjct: 221 KYRK 224
>gi|92116012|ref|YP_575741.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
gi|91798906|gb|ABE61281.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
Length = 246
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
+DYR R+PI +++ + V+I + RG + + G + + + P
Sbjct: 42 PNDYRLRHPIAIQEANRTVNIFVGNTRGGLSASQRADVVGLASVWLREGTGAIVAEAPMG 101
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + +++++R ++ ++G+P I R Y TIRL+Y AG CG
Sbjct: 102 TSNARAAADSLREVRSLLTAAGVPPRGIIVRHYHPADPRLFATIRLTYPQIAAVAGPCGV 161
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WPED+ + K N+ + N+GCA Q NLAA V NP DL PR TP +R ++
Sbjct: 162 WPEDLGPSIKNKGYLDNKPYWNFGCASQRNLAAMVDNPSDLVQPRPETPTYTARRTYALD 221
Query: 240 RYRQ 243
+YRQ
Sbjct: 222 KYRQ 225
>gi|15963895|ref|NP_384248.1| hypothetical protein SMc04110 [Sinorhizobium meliloti 1021]
gi|307315792|ref|ZP_07595306.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti BL225C]
gi|15073070|emb|CAC41529.1| Pilus assembly protein cpaD [Sinorhizobium meliloti 1021]
gi|306898560|gb|EFN29233.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti BL225C]
Length = 226
Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 3/199 (1%)
Query: 47 LFFLLLFYGTSA---LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
L G ++ LA DYR R+PI++ + E+ +DIP+ +G + D IR
Sbjct: 14 AIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIR 73
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
GF +Y+N S+SV+ +++P +V+ + + KDIR+++ +SG+ + E YDA
Sbjct: 74 GFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTG 133
Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
D IRLSY A CG WPED+ N NRN+ N+GCA Q+NLAAQ+ NP DL P
Sbjct: 134 DAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGP 193
Query: 224 RMVTPPDAEQRDKSIQRYR 242
R ++P DAEQR + I +R
Sbjct: 194 RQMSPIDAEQRGQVIDSWR 212
>gi|209551760|ref|YP_002283677.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537516|gb|ACI57451.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 244
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
+ L L + G + L DYR R+PI++ + EQ VDIP+ + +
Sbjct: 23 KGLFAAVAMVLAVLSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLT 82
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
D IRGF Y ++ +++L P + +SA+ + +R + S GI S I
Sbjct: 83 NAQRDLIRGFAANYIARASGPVYVLSPQGSPNSAAAYQLRNQVRAELASRGIASSKIVNT 142
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQ+
Sbjct: 143 SYAAVGPGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFTNQNYYNFGCASQNNLAAQIA 201
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 202 NPEDLVAPRGMTPIDAQRRNNAIQEYR 228
>gi|299132287|ref|ZP_07025482.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
gi|298592424|gb|EFI52624.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
Length = 246
Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 10/212 (4%)
Query: 41 TLMLGQLFFLLLFYGT-----SALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
+ L + + G + + DYR R+PI++++ + +I + RG +
Sbjct: 13 AMAALALVSVTMLGGCMHSQEAGIVTGSLPDDYRLRHPIVIQEASKTTEIFVGHARGGLT 72
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
I G + + ++ + + +P+ T ++ + V+DI+ I+ ++GIP I
Sbjct: 73 TAQRADIVGLSQAWLSEGTGAITIDVPTGTPNAQAASVTVRDIQNILAAAGIPPKGIRVM 132
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAYQNNL 210
Y + +R+ Y AG CG WPED+ + K NR++ N+GCAYQ N+
Sbjct: 133 PYHPNDPRQFAPVRVRYARIIADAGPCGLWPEDLGPSVKNKSYFENRSYQNFGCAYQRNM 192
Query: 211 AAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
AA V NP DL PR TPP++ +R ++ +YR
Sbjct: 193 AAMVANPADLVQPRAETPPNSARRTEAFAKYR 224
>gi|159184217|ref|NP_353253.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|159139546|gb|AAK86038.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 193
Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 103/178 (57%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS
Sbjct: 7 PDDYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSG 66
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ +SA+ R K IR + +G+ I E Y A D IRLSY A G+CG
Sbjct: 67 SPNSATAARMAKQIRSTLSGAGVAQGKIMETRYAASPNGDSAPIRLSYVAVTAMTGQCGQ 126
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
WPED+ N N+NW N+GCA Q+NLAAQ+ NP+DL PR ++P DAE+R I YR
Sbjct: 127 WPEDLSDNTFANKNWYNFGCASQSNLAAQIANPMDLVGPRGMSPIDAERRAVVIDTYR 184
>gi|307320427|ref|ZP_07599844.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti AK83]
gi|306893993|gb|EFN24762.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
meliloti AK83]
Length = 226
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 3/199 (1%)
Query: 47 LFFLLLFYGTSA---LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
L G ++ LA DYR R+PI++ + E+ +DIP+ +G + D IR
Sbjct: 14 AIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIR 73
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
GF +Y+N S+SV+ +++P +V+ + + KDIR+++ +SG+ + E YDA
Sbjct: 74 GFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTG 133
Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
D IRLSY A CG WPED+ N NRN+ N+GCA Q+NLAAQ+ NP DL P
Sbjct: 134 DAAPIRLSYVAITAQTAPCGAWPEDLALNTLVNRNYYNFGCATQSNLAAQIANPTDLVGP 193
Query: 224 RMVTPPDAEQRDKSIQRYR 242
R ++P DAEQR + I +R
Sbjct: 194 RQMSPIDAEQRGQVIDSWR 212
>gi|209886531|ref|YP_002290388.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
gi|209874727|gb|ACI94523.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
Length = 247
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 41 TLMLGQLFFLLLFYGTSALAYYDE------GSDYRDRYPILMRKVEQIVDIPLLAGRGEI 94
L L G + + E DYR R+PI++++ + +I + RG +
Sbjct: 13 ALAALTLIGAAALGGCTHRSQEAEIVTGSLPVDYRARHPIVIQEAAKTTEIFVGHARGGL 72
Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISE 154
I G + + ++ + + P+ T ++ + V+DI+ +++++GIP +
Sbjct: 73 TTAQRTDIAGLAQAWLSEGTGAITIDTPTGTPNAQAASVTVRDIQNMLVAAGIPARGVKV 132
Query: 155 RIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAYQNN 209
+ Y + +R+ Y AG CG WPED+ + K NR + N+GCAYQ N
Sbjct: 133 QPYHPNDPRQFAPVRVRYARIIADAGPCGLWPEDLGPSVKNKSYFENRPYQNFGCAYQRN 192
Query: 210 LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+AA V NP DL PR +P ++ +R ++ +YR
Sbjct: 193 MAAMVANPADLVQPRAESPSNSARRSQAFTKYR 225
>gi|118589704|ref|ZP_01547109.1| components of type IV pilus [Stappia aggregata IAM 12614]
gi|118437790|gb|EAV44426.1| components of type IV pilus [Stappia aggregata IAM 12614]
Length = 238
Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 4/201 (1%)
Query: 47 LFFLLLFYGTSALAYYDEG----SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTI 102
+F L+ G + DYR +PI++ + + +D+P+ I PI TI
Sbjct: 19 VFGCLIAAGCQNQSQSTSQMLASHDYRLMHPIVITEEPETLDLPVGRNTRNINGPIESTI 78
Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
F ++ + + +L+PS + A++ IR+ + G+ + IS R Y
Sbjct: 79 AAFGQQSRQKGNGSVEILVPSGGANEAAVHSITPKIRQALQQGGVSRNRISTRTYSVGDP 138
Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFS 222
IRLSY + +AG+CG WP ++ G N N+ N+GCA Q NLAA V NP DL +
Sbjct: 139 GADAPIRLSYARMQATAGECGAWPRNIGGGFGENINYENFGCASQANLAAMVDNPSDLIT 198
Query: 223 PRMVTPPDAEQRDKSIQRYRQ 243
PR P D +R I++YR+
Sbjct: 199 PRASAPSDQGRRAVVIEKYRK 219
>gi|146338122|ref|YP_001203170.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
gi|146190928|emb|CAL74933.1| Putative pilus assembly protein cpaD; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 246
Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI +++ + + + GRG + + G + + + +PS
Sbjct: 42 PDDYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMGLAQSWMRQGTGAIVADVPSG 101
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG
Sbjct: 102 TPNARAAADSMREIQSLFSAAGVPPHGVTVRNYQPKDPRQMAAIRLSYPKLSATAGPCGL 161
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WP+D+ + K N+ N+GCAYQ N+AA V NP DL PR TP +R +
Sbjct: 162 WPDDLGPSVKNKNWFDNKPDWNFGCAYQRNMAAMVDNPADLVQPRPETPSYTTRRTALFE 221
Query: 240 RYRQ 243
+YR+
Sbjct: 222 KYRK 225
>gi|222147181|ref|YP_002548138.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734171|gb|ACM35134.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 196
Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 103/178 (57%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI++ VE +D+P+ G + + D + GF + Y+N S + +L+P
Sbjct: 7 PDDYRTRHPIIVTDVEHSLDLPVAQGSSRLTIGMSDAVTGFAQDYRNASTGYVQILVPQG 66
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ ++ + + +R +++S GI I ER Y A D IRLSY A+ AG CG
Sbjct: 67 SPNTMAASSIARQVRNLLVSKGIAAPKIVERPYRAGATGDAAPIRLSYVATTAVAGPCGQ 126
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
WPED+ + N+NW N+GCA Q NLAAQV +P DL +PR +TP DAE+R I YR
Sbjct: 127 WPEDLSNDTAQNKNWQNFGCASQANLAAQVASPTDLIAPRGMTPIDAERRSTVIDNYR 184
>gi|163757628|ref|ZP_02164717.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
gi|162285130|gb|EDQ35412.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
Length = 233
Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Query: 39 LRTLMLGQLFFLLLFYGTSA-----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGE 93
+R L + L + G + + DYR +PI++ + E+ VDIP+ G E
Sbjct: 16 VRYLAISMLAAASVLTGCAGWGGKSVVVGAVPDDYRTNHPIIVAEQERTVDIPVGTGDRE 75
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ + + +RG Y++ ++ + +++P + ++ + + KI+ G+P I
Sbjct: 76 LTTSMREIVRGAAHSYRSSASGAVRIMVPVGSANAGAASILSGQVAKILQKEGVPRDRIL 135
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
Y D IR++Y A S KCG WPED+ + N++W N+GCA Q+NLAAQ
Sbjct: 136 SSPYSVSSPDDAAPIRIAYLAITASTEKCGRWPEDLAADTTENKHWANFGCASQSNLAAQ 195
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ NP DL +PR ++P DAE+R I+ YR+
Sbjct: 196 IANPGDLIAPRGMSPIDAERRSTIIETYRE 225
>gi|148258236|ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
gi|146410409|gb|ABQ38915.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
Length = 244
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI +++ + + + GRG + + + + + +P+
Sbjct: 40 PDDYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMALAQSWLRQGTGAISADVPTG 99
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG
Sbjct: 100 TPNARAAGDSMREIQSLFAAAGVPPHGLTVRNYQPKDPRQMAAIRLSYPKMSATAGPCGV 159
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WP+D+ K N+ N+GCAYQ N+AA V NP DL PR TP +R
Sbjct: 160 WPDDLGPTIKNKNWFENKPDWNFGCAYQRNMAAMVDNPADLVQPRAETPSYTTRRTALFD 219
Query: 240 RYRQ 243
+YR+
Sbjct: 220 KYRK 223
>gi|227823972|ref|YP_002827945.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
gi|227342974|gb|ACP27192.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
Length = 234
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 74/184 (40%), Positives = 110/184 (59%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
LA DYR R+PI++ + E+++DIP+ +G + D IRGF +Y+N S V+
Sbjct: 45 LATGSIPDDYRTRHPIVIAEGERVIDIPVASGDRRLTAGTRDVIRGFATEYRNASGGVIQ 104
Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
+++P + +S + + KDIR+++ +SG+P + E Y+A D IRLSY A
Sbjct: 105 IMLPRGSANSHAAQIVRKDIRRLLAASGVPPKRMIETGYEAVSPGDAAPIRLSYVAITAQ 164
Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
CG WPED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DA QR + I
Sbjct: 165 TAPCGEWPEDLTLNTLQNRNYYNFGCASQSNLAAQIANPTDLIGPRQMSPVDAAQRGEVI 224
Query: 239 QRYR 242
+R
Sbjct: 225 DAWR 228
>gi|148256958|ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
gi|146409131|gb|ABQ37637.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
Length = 247
Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 9/210 (4%)
Query: 43 MLGQLFFLLLFYG-TSALAYYDE---GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPI 98
G + L L G +A DY+ R+PI + + Q + + + +GRG + Y
Sbjct: 17 RCGAIIGLALTLGACNATTGEVVATIPDDYKIRHPIAVEEGRQSIVVFVGSGRGGLTYQQ 76
Query: 99 HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158
+ G ++ + + +P+ T ++ + ++I ++ S G+P SI+ R Y
Sbjct: 77 RADVAGLARSWQREGTGAIVAEVPADTPNARAAADTYREIHAMLTSGGVPSRSITLRHYT 136
Query: 159 ADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAK-----GNRNWTNYGCAYQNNLAAQ 213
D + +RLSY AG CG WP+D+ N N+++ N+GCA Q NLAA
Sbjct: 137 PDDPRLLAAVRLSYPKIAAVAGPCGLWPDDLGPNIDNPSYSNNQHYHNFGCATQRNLAAM 196
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ NP DL PR +R ++YR+
Sbjct: 197 IDNPADLEQPRAEVAAYTPRRSALFEKYRK 226
>gi|316933038|ref|YP_004108020.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris DX-1]
gi|315600752|gb|ADU43287.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Rhodopseudomonas palustris DX-1]
Length = 242
Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 39 LRTLMLGQLF--FLLLFYGTSALAYYDE-----GSDYRDRYPILMRKVEQIVDIPLLAGR 91
+R L LG F L + E +DYR R+PI +R+ ++ V++ + GR
Sbjct: 10 MRGLGLGAALIGFSLSLGACTHTKREVEVTQSIPTDYRQRHPIAIREADRTVEVFVGNGR 69
Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
G + + + + + + +PS T ++ + +++I+ ++ ++G+P
Sbjct: 70 GGLTALQRAEVAELGQAWLREGTGAIIAEVPSDTPNARAASDTIREIQSVLSANGVPPRG 129
Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAY 206
++ + Y TIRL Y AG CG WPED+ + K NR + N GCA
Sbjct: 130 VTVKHYRPADPRTFATIRLIYPKITAVAGPCGLWPEDIGPSIKNKGYYDNRPYWNLGCAN 189
Query: 207 QNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
Q NLAA V NP DL PR TP +R + YR
Sbjct: 190 QRNLAAMVENPADLVQPRPETPAYTARRMVTNDVYR 225
>gi|116249982|ref|YP_765820.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254630|emb|CAK05704.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 250
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 5/207 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
+ L + + G + L DYR R+PI++ + EQ VDIP+ + +
Sbjct: 31 KALFATVAMSVAILSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLT 90
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
D IRGF Y + ++ +++L P + +SA+ + +R + S GI S I
Sbjct: 91 IAQRDLIRGFAANYISRASGPVYVLSPQGSPNSAAAYQLRNQVRAELTSRGIASSKIVNT 150
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQ+
Sbjct: 151 SYAAVGPGDAAPIRLSFTGTTAVTTQCGQWPKDI-SNDLTNQNYYNFGCASQNNLAAQIA 209
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 210 NPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|254503403|ref|ZP_05115554.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
gi|222439474|gb|EEE46153.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
Length = 221
Score = 248 bits (632), Expect = 8e-64, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 4/200 (2%)
Query: 47 LFFLLLFYGTS----ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTI 102
+ L+ G + A DYR ++PI++ + + +D+P+ ++ P+ DTI
Sbjct: 3 VLAALMLSGCQTEPKSNAELLATHDYRYQHPIVVSEAPETLDLPVGKNTRNLRSPVTDTI 62
Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
F + + + +L+P+ + +++ V DIR + G+ ++ R Y +
Sbjct: 63 TSFAMDSRRHGSGNVEILVPTGAANESAVHAVVHDIRGALSRGGVNGKHVTTRTYRSTDS 122
Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFS 222
IRLSY K + G+CG WP+++ G N N+ N+GCA Q+NLAA V NP DL +
Sbjct: 123 SADAPIRLSYARMKATTGECGAWPKNIGGGIGENTNYYNFGCATQSNLAAIVENPSDLIT 182
Query: 223 PRMVTPPDAEQRDKSIQRYR 242
PR +TP D +R I++YR
Sbjct: 183 PRAMTPSDQNRRAVVIEKYR 202
>gi|304392383|ref|ZP_07374324.1| pilus assembly protein [Ahrensia sp. R2A130]
gi|303295487|gb|EFL89846.1| pilus assembly protein [Ahrensia sp. R2A130]
Length = 227
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 66/178 (37%), Positives = 104/178 (58%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
S+Y+ R+PI++ + EQ +DIP+ + + GF KY+ + + ++IP +
Sbjct: 35 SNYKTRHPIVIDEKEQTLDIPVGSDTVRLPRAQESATEGFASKYRRSPSGTMTIMIPRHS 94
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
++++ R + +I+ G+P SSI YDA IR+SY A + S +CG W
Sbjct: 95 PNASAARSMSHQVAEILRREGVPPSSIVTTSYDASRHGSAAPIRVSYHAVQASVERCGKW 154
Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
PED+ G N+NW N+GCA QNN+AAQ+ NP DL +PR +T DAE+R+ I+ YR+
Sbjct: 155 PEDLAGPNLDNQNWHNFGCANQNNMAAQIANPSDLVAPRGMTQADAERRNNVIEDYRE 212
>gi|307943146|ref|ZP_07658491.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
gi|307773942|gb|EFO33158.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
Length = 237
Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 5/208 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGSD-----YRDRYPILMRKVEQIVDIPLLAGRGEI 94
RT + F LL G ++ S+ Y+ R+PI++ + +++D+P+ A +
Sbjct: 10 RTAIGATFFVSLLLAGCNSQTVGQNNSNLAATNYQLRHPIVVTEQPEVLDLPIGAHMRNL 69
Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISE 154
P+ T++ F + + +L+PS + A++ V IR + + G+ +IS
Sbjct: 70 NGPLRGTVKAFGADSRKKGNGRVEILVPSGGRNEAAVHALVPQIRSSLKAGGLSGGAIST 129
Query: 155 RIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214
R Y D IRLSY + +AG CG W D+ N ++ NYGCA Q+NLAA V
Sbjct: 130 RSYAVDNPSADAPIRLSYPRIQATAGPCGTWNGDIGRTFDRNVDYENYGCATQSNLAAMV 189
Query: 215 VNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR P D +R +++YR
Sbjct: 190 ENPSDLLTPRASAPADRMRRANVVEKYR 217
>gi|110636322|ref|YP_676530.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium sp. BNC1]
gi|110287306|gb|ABG65365.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Chelativorans
sp. BNC1]
Length = 226
Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 2/185 (1%)
Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL 117
++ DYR +PI++ + EQ++D+P+ + ++ GF+E Y +V+
Sbjct: 28 SITVGALPDDYRTNHPIVLSEKEQVLDLPVGVFSYRMTPQQKMSLEGFMEHYGESGKAVV 87
Query: 118 FLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
+L+PS + + + R +DI + + G+P + YDA +R+SY
Sbjct: 88 TVLVPSGSPNERAASRLSEDIAQFLYRRGVPKGHLQVLSYDA-PAEQASPVRVSYSVVAA 146
Query: 178 SAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
+ G+CG WPED+L N+++ N+GCAYQNNLAAQ+ NP+DL PR TP DAE RD +
Sbjct: 147 TTGQCGRWPEDLLDTT-ENKHYANFGCAYQNNLAAQIANPMDLLGPRKTTPIDAENRDTA 205
Query: 238 IQRYR 242
I RY+
Sbjct: 206 IGRYK 210
>gi|27375776|ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27348914|dbj|BAC45930.1| pilV [Bradyrhizobium japonicum USDA 110]
Length = 244
Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 6/209 (2%)
Query: 41 TLMLGQLFFLLLFYGTSALAYYDE-GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIH 99
L+L L +L T+ +DYR R+PI +++ ++ + I + RG +
Sbjct: 15 ALVLTGLSVMLGACNTTGEIVTQTVPTDYRQRHPIAVQEAKKSIVIFVGKARGGLSAAQQ 74
Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159
+ G + + + + +P + +S + +IR ++ S G+P +I + Y
Sbjct: 75 SDVAGTARDWVREGTGSVVVDVPIGSANSRAAATTYHEIRSVLASGGVPSRAIVQHPYRP 134
Query: 160 DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA-----KGNRNWTNYGCAYQNNLAAQV 214
+ + TIRLSY AG CG WPED+ + N+ + N GCA Q NLAA +
Sbjct: 135 EDPGLLPTIRLSYSRIAAVAGPCGLWPEDVGPSILDPGYNENQPYFNLGCASQRNLAAMI 194
Query: 215 VNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
NP DL PR TP +RD + RYR+
Sbjct: 195 DNPADLEQPRAETPVYTARRDIAFDRYRK 223
>gi|27376549|ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349690|dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 244
Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 8/208 (3%)
Query: 44 LGQLFFLLLFYGTSALAYYDEGS---DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHD 100
G L + L G S Y+ R+PI + + + + + + RG +
Sbjct: 16 GGALVGIGLALGGCQHDEAVTASIPDSYKQRHPIAIEEQNRSIVVFVGHARGGLTAAQRA 75
Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
+ G + ++ + + PS T ++ + ++++I+ ++ ++G+P I R Y +
Sbjct: 76 DVMGLASAWLHEGTGAIHIDAPSGTPNARPVAESMREIQAMLAAAGVPPRGIIARPYQPE 135
Query: 161 YGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVV 215
+ IRL+Y AG CG WPED+ + K N+ + NYGCAYQ NLAA V
Sbjct: 136 DKRFLPPIRLTYSKIAAVAGPCGLWPEDIGPSMKNKGWFENKEYYNYGCAYQRNLAAMVD 195
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
NP DL PR TP +R + ++YR+
Sbjct: 196 NPSDLEQPRPETPSYTTRRTAAFEKYRK 223
>gi|190889882|ref|YP_001976424.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695161|gb|ACE89246.1| pilus assembly protein [Rhizobium etli CIAT 652]
Length = 252
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 5/207 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
+ L + + + G + L DYR R+PI++ + EQ VDIP+ + +
Sbjct: 31 KALFVTAAVSVAVLSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLT 90
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
D IRGF Y + ++ +++L P + +SA+ + +R + S GI S I
Sbjct: 91 IAQRDLIRGFAANYVSRASGPVYVLSPEGSPNSAAAHQLRNQVRAELASRGIASSKIINT 150
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQV
Sbjct: 151 SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNFGCATQNNLAAQVA 209
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 210 NPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|86355865|ref|YP_467757.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279967|gb|ABC89030.1| pilus assembly protein [Rhizobium etli CFN 42]
Length = 233
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 5/207 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
R L+ + + + G + L DYR R+PI++ + EQ VDIP+ + +
Sbjct: 12 RALVTTVVISVAILSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLT 71
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
D IRGF Y + ++ +++L P + +SA+ + +R + + GI S I
Sbjct: 72 IAQRDLIRGFAANYISRASGPVYVLSPEGSPNSAAADQLRNQVRAELTTRGIASSKIINT 131
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQ+
Sbjct: 132 SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDLANQNYYNFGCASQNNLAAQIA 190
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 191 NPEDLVAPRGMTPIDAQRRNNAIQEYR 217
>gi|146342079|ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
gi|146194885|emb|CAL78910.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. ORS278]
Length = 256
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 8/196 (4%)
Query: 56 TSALAYYDE---GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND 112
++ + DY+ R+PI + + Q + + + +GRG + P + G ++ +
Sbjct: 40 CNSTSGEVVATIPDDYKMRHPIAIEEGRQSIVVFIGSGRGGLTMPQRADVAGLARSWRRE 99
Query: 113 SASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSY 172
+ +P+ T ++ + + A ++I ++ G+P +I+ R D + IRLSY
Sbjct: 100 GTGAIVADVPAGTPNARAAQDAYREIHAMLTEGGVPSRAITMRHPTPDDPRQLAVIRLSY 159
Query: 173 FASKPSAGKCGFWPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVT 227
AG CG W +D+ N N+++ N+GCA Q NLAA + NP DL PR T
Sbjct: 160 PKIAAVAGPCGLWQDDLGPNINNPGYSSNQHYQNFGCATQRNLAAMIDNPADLEQPRSET 219
Query: 228 PPDAEQRDKSIQRYRQ 243
+R ++YR+
Sbjct: 220 AAYTPRRSALFEKYRK 235
>gi|115525750|ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
BisA53]
gi|115519697|gb|ABJ07681.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
BisA53]
Length = 249
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 5/184 (2%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI +++ +Q ++I + GRG + P I + + +++ + + P+
Sbjct: 45 PDDYRQRHPIAIQEADQTLNIFVGTGRGGLTGPQRAAIAAVAQSWLSEATGRIVIDQPAQ 104
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T ++ + +V++IR ++ ++GIP ++++ R Y IR++Y +AG CG
Sbjct: 105 TPNARAAADSVREIRALLAAAGIPTNAVAVREYQPSDPRLFAAIRVNYPRLVATAGPCGL 164
Query: 185 WPEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
WP+D+ + N+ N+GCA Q NLAA V NP DL PR TP +R +
Sbjct: 165 WPDDLGPSVNNPGYIENKPSYNHGCAVQRNLAAMVENPADLVQPRAETPAYTARRTIAFD 224
Query: 240 RYRQ 243
+YR+
Sbjct: 225 KYRK 228
>gi|241207158|ref|YP_002978254.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861048|gb|ACS58715.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 235
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Query: 35 KNFFLRTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAG 90
K FF M + + G + L DYR R+PI++ + EQ VDIP+ +
Sbjct: 15 KAFFAMAAMS-----MAILSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVAST 69
Query: 91 RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVS 150
+ D IRGF Y + ++ +++L P + +SA+ + +R + S GI S
Sbjct: 70 DRRLTIAQRDLIRGFATNYISRASGPVYVLSPQGSPNSAAAYQLRNQVRAELTSRGIASS 129
Query: 151 SISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNL 210
I Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNL
Sbjct: 130 KIVNTSYAAAGPGDAAPIRLSFTGTTAVTTQCGQWPKDI-SNDLTNQNYYNFGCASQNNL 188
Query: 211 AAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
AAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 189 AAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 220
>gi|325291658|ref|YP_004277522.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059511|gb|ADY63202.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 252
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 104/178 (58%)
Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS
Sbjct: 66 PDDYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSG 125
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ +SA+ + + IR + +G+P I E Y A D IRLSY A G+CG
Sbjct: 126 SANSAAASKMARQIRSALSGAGVPSGKIMETRYAASPNGDAAPIRLSYVAVTAMTGQCGQ 185
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
WPED+ N N+NW N+GCA Q+NLAAQV NP+DL PR ++P DAE+R I YR
Sbjct: 186 WPEDLSDNTFANKNWYNFGCASQSNLAAQVANPMDLVGPRGMSPIDAERRAVVIDAYR 243
>gi|327194693|gb|EGE61539.1| pilus assembly protein [Rhizobium etli CNPAF512]
Length = 252
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 5/207 (2%)
Query: 40 RTLMLGQLFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
+ L + + + G + L DYR R+PI++ + EQ VDIP+ + +
Sbjct: 31 KALFVTAAVSVAVLSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLT 90
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
D IRGF Y + ++ +++L P + +S + + +R + S GI S I
Sbjct: 91 IAQRDLIRGFAANYVSRASGPVYVLSPEDSPNSTAAHQLRNQVRAELASRGIASSKIINT 150
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQV
Sbjct: 151 SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNFGCATQNNLAAQVA 209
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 210 NPEDLVAPRGMTPIDAQRRNNAIQEYR 236
>gi|328545278|ref|YP_004305387.1| Pilus biogenesis lipoprotein CpaD [polymorphum gilvum SL003B-26A1]
gi|326415020|gb|ADZ72083.1| Pilus biogenesis lipoprotein CpaD [Polymorphum gilvum SL003B-26A1]
Length = 239
Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 94/183 (51%)
Query: 60 AYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL 119
A +DYR R+PI++ + + +D+P+ + + + F + + + + +
Sbjct: 36 APLAATNDYRLRHPIVITEQAETLDLPVGQSTRNLNRDFAERVTEFGQASRRNGNGHVEI 95
Query: 120 LIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA 179
L+PS + A++ IR + G+ + +S R Y D IRL+Y K SA
Sbjct: 96 LVPSGAANEAAVHAVTPRIRSALALGGVSGTHVSTRSYPVDDATAQAPIRLAYTRIKASA 155
Query: 180 GKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
G CG WP ++ G+ N+++ N+GCA Q NLAA V NP DL PR +TP D +R Q
Sbjct: 156 GPCGEWPANIGGSLNANQDYYNFGCATQANLAAMVDNPADLLGPRAMTPADQMRRATVFQ 215
Query: 240 RYR 242
+YR
Sbjct: 216 KYR 218
>gi|13474661|ref|NP_106230.1| pilus assembly protein cpaD [Mesorhizobium loti MAFF303099]
gi|14025416|dbj|BAB52016.1| pilus assembly protein; CpaD [Mesorhizobium loti MAFF303099]
Length = 251
Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 51 LLFYGTS---ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLE 107
L G + ++ DYR +PI++ + Q +D+P+ AG + DT+ GFL+
Sbjct: 42 ALLVGCAQRDSITVGAIPDDYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLD 101
Query: 108 KYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDT 167
Y +A L + IPS + + + A +D ++ ++SG+ + I Y A
Sbjct: 102 GYDKSAAPTLTIQIPSGSANEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGSSETSAP 161
Query: 168 IRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVT 227
+R+SY A + KCG WPED+L + N+++ ++GC+YQNNLAAQ+ NP DL PR T
Sbjct: 162 VRVSYIAVRAQTDKCGRWPEDLLETS-ENKHYADFGCSYQNNLAAQMANPADLLGPRKQT 220
Query: 228 PPDAEQRDKSIQRYR 242
DAE R K I YR
Sbjct: 221 TIDAENRGKVIDVYR 235
>gi|222084470|ref|YP_002542999.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721918|gb|ACM25074.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 235
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGS----DYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
R L + G + S DYR R+PI++ E VDIP+ +
Sbjct: 15 RFAALAMIVMATAVSGCAGSRDGMTTSAITDDYRQRHPIVLTDKEHRVDIPVSVSDRRLT 74
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
+ DT+RGF++ Y+ + + ++ P + +SA+ + IR+ +++SGIP + I++
Sbjct: 75 SGMRDTVRGFVQDYRAHATGTVEIMTPRESANSAAASALRRQIRQELMASGIPSARITDN 134
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRL + A+ CG WP D+ NA N+N+ N+GCA QNNLAAQV
Sbjct: 135 YYPAGGPGDAAPIRLRFMATAAVTNACGQWPADLADNAFDNQNYYNFGCATQNNLAAQVA 194
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA+QR K I YR
Sbjct: 195 NPTDLIAPRAMTPIDADQRSKVIDNYR 221
>gi|260461948|ref|ZP_05810193.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
opportunistum WSM2075]
gi|259032195|gb|EEW33461.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
opportunistum WSM2075]
Length = 243
Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)
Query: 39 LRTLMLGQLFFLLLFYGTS---ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
LR L + + L G + ++ DYR +PI++ + Q +D+P+ AG +
Sbjct: 22 LRALPVLAVAATALLAGCAQRDSVTVGAIPDDYRTNHPIVIAEKNQKIDLPVGAGDRGMT 81
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
DT+ GFL+ Y +A L + IPS + + + R A +D ++ ++SGI + I+
Sbjct: 82 GSQRDTLLGFLDGYDKSAAPALTIQIPSGSANEVAARAAGRDFARLAVASGIKRNRIAVV 141
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A +R+S+ A + KCG WPED++ ++ N+++ ++GC+YQNNLAAQ+
Sbjct: 142 SYQAGSSEASAPVRVSFIAVRAQTDKCGRWPEDLVESS-ENKHYADFGCSYQNNLAAQMA 200
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL PR T DAE R I YR
Sbjct: 201 NPADLLGPRKQTTIDAENRGAVIDVYR 227
>gi|153008060|ref|YP_001369275.1| pilus biogenesis lipoprotein CpaD [Ochrobactrum anthropi ATCC
49188]
gi|151559948|gb|ABS13446.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
anthropi ATCC 49188]
Length = 239
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL 117
+ DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L
Sbjct: 33 HVTVGALPDDYRTNHPITIAEREQVTDIPVAQADQKLSPMQRGIVQGAIANYRRGGSGML 92
Query: 118 FLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
++L+PS T + A+ R ++ ++ GI ++I+ Y + IR+SY+A
Sbjct: 93 YVLVPSGTSNQAAAYRLSTEVSAMLRRGGIKANNIAIENYPVENPEAAAPIRISYYAMTA 152
Query: 178 SAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
CG WP+D L + N+++ N+GCA QNNLAAQV NP DL PR+++P D+++ +
Sbjct: 153 GTTPCGRWPDD-LASTPENKHYANFGCASQNNLAAQVANPADLLGPRVMSPIDSDRTTER 211
Query: 238 IQ 239
+
Sbjct: 212 LN 213
>gi|90419765|ref|ZP_01227674.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
SI85-9A1]
gi|90335806|gb|EAS49554.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
SI85-9A1]
Length = 244
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 54 YGTSALAYYDE----GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKY 109
G A + E DYR R+PI++ + ++ +DIP++ + Y + F +++
Sbjct: 37 AGGCANVHNVEVGSIPDDYRTRHPIVVSEDQEAIDIPIVMSDARLSYANRGRVEHFGDRF 96
Query: 110 KNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169
+ A + +++P+ + + + R +I + + I I + Y A IR
Sbjct: 97 RASGADSIQVMLPTGSANQYAAERVSHEIVEALRGRYISRDRIFVQPYSAVGAEGPTPIR 156
Query: 170 LSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPP 229
L+Y G CG WP+DM + N+N+ N+GCA Q NLAAQ+ +P DL SPR V
Sbjct: 157 LTYATLVAKTGPCGRWPDDM-TDTSENKNYFNFGCASQQNLAAQIADPRDLLSPRGVDSI 215
Query: 230 DAEQRDKSIQRYRQ 243
DA +R + YR+
Sbjct: 216 DAGRRTTVLDNYRR 229
>gi|319785607|ref|YP_004145083.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171495|gb|ADV15033.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 245
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 1/186 (0%)
Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL 117
++ DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L
Sbjct: 46 SITVGAIPDDYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDRSAAPTL 105
Query: 118 FLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
+ +PS + + + A +D ++ ++SGI + I Y + IR++Y + K
Sbjct: 106 TIQVPSGSANEVAATTAARDFARLAVASGIKRNRIVVTSYQSASAEASAPIRVAYISVKA 165
Query: 178 SAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
KCG WPED++ + N+++ ++GC+YQNNLAAQ+ NP DL PR D R ++
Sbjct: 166 QTDKCGRWPEDLMETS-ENKHYADFGCSYQNNLAAQMANPADLLGPRKSANIDPANRSQA 224
Query: 238 IQRYRQ 243
I Y++
Sbjct: 225 IDVYQK 230
>gi|239833236|ref|ZP_04681565.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
intermedium LMG 3301]
gi|239825503|gb|EEQ97071.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
intermedium LMG 3301]
Length = 239
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL 117
+ DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L
Sbjct: 33 HVTVGALPDDYRTNHPITIAEREQVTDIPIAQADQKLSPMQRGIVQGAIANYRRSGSGML 92
Query: 118 FLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
++L+PS + A+ R ++ + SGI ++I+ Y + IR+SY+A
Sbjct: 93 YVLVPSGASNQAAAYRLSTEVAATLRRSGIKANNIAIENYPVESPDAAAPIRISYYAITA 152
Query: 178 SAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233
CG WP+D L + N+++ N+GC QNNLAAQV NP DL PR +TP D+++
Sbjct: 153 GTTPCGRWPDD-LASTPENKHYANFGCVSQNNLAAQVANPADLLGPRTMTPIDSDR 207
>gi|254473746|ref|ZP_05087141.1| components of type IV pilus [Pseudovibrio sp. JE062]
gi|211957132|gb|EEA92337.1| components of type IV pilus [Pseudovibrio sp. JE062]
Length = 218
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 6/196 (3%)
Query: 52 LFYGTSALAYYDEGS-----DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFL 106
+ ++ + Y E DYR R+PI++ +V + DIP+ + + + F
Sbjct: 1 MLAACNSTSSYVEQHTVADIDYRKRHPIVITEVPENFDIPVSGEARNLNRSLKTAVAAFG 60
Query: 107 EKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVD 166
++ D + +L+PS + + A++R IR + G+ + I R Y
Sbjct: 61 QQAIVDGNGFVEVLVPSGSANEAAVRAISPQIRTALKQGGMEANKIVMRSYSVSDMAASA 120
Query: 167 TIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMV 226
+RLS+ K + CG WP M+ N N ++ N+GCA Q NLAA V NP DL PR +
Sbjct: 121 PVRLSFMRIKGAVRDCGNWPTGMVVNH-QNLDYHNFGCASQANLAAVVDNPTDLLRPRTL 179
Query: 227 TPPDAEQRDKSIQRYR 242
P D + + + + R
Sbjct: 180 GPNDPSRTNVVLTKNR 195
>gi|323137426|ref|ZP_08072504.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
sp. ATCC 49242]
gi|322397413|gb|EFX99936.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
sp. ATCC 49242]
Length = 254
Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 15/216 (6%)
Query: 39 LRTLMLGQLFFLLLFYGTSALA------YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRG 92
LR L G++ LLL A DY DR+P+++ + ++D+ G
Sbjct: 22 LRALRAGKVLALLLTAPLGACGVNRVLPPPVAPYDYHDRHPVVLAEAPHVIDLFPSVVHG 81
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ Y I+ F+E Y+ + LL P SA+ V +R+ + ++G+ +I
Sbjct: 82 GVDYTTEGRIKEFVEHYREFGHGQVTLLTPVGAPYSAA---GVSAVRRALAAAGL-RGNI 137
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSA-GKCGFWPEDMLGNAK----GNRNWTNYGCAYQ 207
Y IRLS+ + K G+CG WP D+ N+++ N+GCA Q
Sbjct: 138 LVGTYSVTDPRLAAPIRLSFQSLKAKVSGRCGEWPTDLASGTSLQGWENQSYWNFGCASQ 197
Query: 208 NNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
L+AQV +P DL PR T D E R ++I R R+
Sbjct: 198 QTLSAQVADPRDLAVPRGETASDIEMRMRAINRVRR 233
>gi|154250690|ref|YP_001411514.1| pilus biogenesis lipoprotein CpaD [Parvibaculum lavamentivorans
DS-1]
gi|154154640|gb|ABS61857.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Parvibaculum
lavamentivorans DS-1]
Length = 234
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 5/203 (2%)
Query: 44 LGQLFFLLLFYGTSALAYYD--EGSDYRDR--YPILMRKVEQIVDIPLLAGRGEIKYPIH 99
+ F L L +G + ++ E + Y +PI + ++I ++ G+ +
Sbjct: 12 TAKGFALALAFGVAGCGGFNGAEQAHYDANYTHPISVEADVATLNIDVVPGQPGVTSTDR 71
Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159
+ I GF Y+ L + PS + ++ + A+ D+R+++ G+ + +S Y A
Sbjct: 72 NAIAGFAAGYRQRGHGPLTISTPSGSPNAGAAAVALSDVREVLSEHGVGGNDLSYTPYRA 131
Query: 160 DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
+ + LS+ CG W N N+GC+ QNNLAA V +P D
Sbjct: 132 SGTDNSAPLILSFKRYVAKPTACGDW-SGSYSYDPSNGLLPNHGCSTQNNLAAMVADPGD 190
Query: 220 LFSPRMVTPPDAEQRDKSIQRYR 242
L +PR ++P DA +R +++YR
Sbjct: 191 LIAPRNMSPADAARRGTVLEKYR 213
>gi|188581661|ref|YP_001925106.1| pilus biogenesis lipoprotein CpaD [Methylobacterium populi BJ001]
gi|179345159|gb|ACB80571.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium populi BJ001]
Length = 247
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
D R R+PI++ ++ +D+ G G I I FL +Y+ +L
Sbjct: 34 TTGSTYPIDVRTRHPIVLADADRSLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILV 92
Query: 119 LLIPSPTVS--SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK 176
+ +P + S+ R +IR++ G+P + I Y +RLS+ +
Sbjct: 93 VELPRGVSPGLAGSVERTGAEIRRLAAEMGVPAAGIRVANYPVANPTLASPLRLSFQRMQ 152
Query: 177 P-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
A KCG WP D+ + N N GCA Q NLAAQV +P+DL R D
Sbjct: 153 AKVADKCGLWPRDLGVSDLRANWSNEPTWNLGCATQANLAAQVADPIDLVRGRPEGRIDT 212
Query: 232 EQRDKSIQRYRQ 243
R K + + R+
Sbjct: 213 VLRTKDLGQLRE 224
>gi|23011548|ref|ZP_00051876.1| hypothetical protein Magn03006165 [Magnetospirillum magnetotacticum
MS-1]
Length = 248
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
Query: 57 SALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASV 116
+A D R R+PI++ ++ +D+ G G + + FL +Y+ +
Sbjct: 33 AATTGSTYPIDVRTRHPIVLADADRTLDVF-PTGVGHLDPRQRADLEAFLVEYRRYGRGL 91
Query: 117 LFLLIPSPTVSSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
L + +P + + + R IR++ G+P Y +RLS+
Sbjct: 92 LLVEMPRGVSPALAGPVERTGAAIRRLAAEMGVPAGGFRIGDYPIANPALAAPLRLSFQR 151
Query: 175 SKP-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPP 229
+ A +CG WP D+ + N N+GCA + N AAQV +P+DL R
Sbjct: 152 MQAKVADQCGLWPRDLGASDLRADWSNEPTWNFGCATRANFAAQVADPVDLVRGRPEGRI 211
Query: 230 DAEQRDKSIQRYRQ 243
D +R + I + R+
Sbjct: 212 DTIRRTQDIGQLRE 225
>gi|218530655|ref|YP_002421471.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
chloromethanicum CM4]
gi|218522958|gb|ACK83543.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
chloromethanicum CM4]
Length = 248
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
D R R+PI++ ++ +D+ G G I I FL +Y+ +L
Sbjct: 35 TTGSTYPIDVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILL 93
Query: 119 LLIPSPTVSSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK 176
+ +P + + + R IR++ G+P + + Y +RLS+ +
Sbjct: 94 VELPRGVSPALAGPVERTGASIRRLATEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQ 153
Query: 177 P-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
A KCG WP D+ + N N GCA Q+N+AAQV +P+DL R D
Sbjct: 154 AKVADKCGLWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDT 213
Query: 232 EQRDKSIQRYRQ 243
R K + + R+
Sbjct: 214 VLRTKDLGQLRE 225
>gi|163851904|ref|YP_001639947.1| pilus biogenesis lipoprotein CpaD [Methylobacterium extorquens PA1]
gi|163663509|gb|ABY30876.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium extorquens PA1]
Length = 248
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
D R R+PI++ ++ +D+ G G I I FL +Y+ +L
Sbjct: 35 TTGSTYPIDVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLGEYRRYGRGILL 93
Query: 119 LLIPSPTVSSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK 176
+ +P + + + R IR++ G+P + + Y +RLS+ +
Sbjct: 94 VELPRGVSPALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQ 153
Query: 177 P-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
A KCG WP D+ + N N GCA Q+N+AAQV +P+DL R D
Sbjct: 154 AKVADKCGLWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDT 213
Query: 232 EQRDKSIQRYRQ 243
R K + + R+
Sbjct: 214 VLRTKDLGQLRE 225
>gi|254561622|ref|YP_003068717.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
gi|254268900|emb|CAX24861.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
Length = 248
Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
D R R+PI++ ++ +D+ G G I I FL +Y+ +L
Sbjct: 35 TTGSTYPIDVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILL 93
Query: 119 LLIPSPTVSSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK 176
+ +P + + + R IR++ G+P + + Y +RLS+ +
Sbjct: 94 VELPRGVSPALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQ 153
Query: 177 P-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
A KCG WP D+ + N N GCA Q+N+AAQV +P+DL R D
Sbjct: 154 AKVADKCGLWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDT 213
Query: 232 EQRDKSIQRYRQ 243
R K + + R+
Sbjct: 214 VLRTKDLGQLRE 225
>gi|300021855|ref|YP_003754466.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523676|gb|ADJ22145.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Hyphomicrobium denitrificans ATCC 51888]
Length = 245
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASV--LFLLIPSP 124
D R+PIL+ + ++++ + AG + + F+++++ A + P+
Sbjct: 50 DPEQRHPILVSQQPAVLNLHVAAGSEGLTPSQRSRVIDFIDRHRASDAGNSRFVISAPAG 109
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ + A+ A D R++I+ G SSI+ Y A +R+SY +CG
Sbjct: 110 SSNEAAAMDAASDTRRLILGGGYADSSIANEAYHASGRD--APLRISYLRYVAEGPECGR 167
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ L A N + N+GC+ Q NLAA V NP DL PR +TP DA +R K ++Y
Sbjct: 168 DWSENLARAYQNTPYPNFGCSSQRNLAAMVSNPADLLGPRTMTPSDANRRFKMYEKY 224
>gi|170750190|ref|YP_001756450.1| pilus biogenesis lipoprotein CpaD [Methylobacterium radiotolerans
JCM 2831]
gi|170656712|gb|ACB25767.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium radiotolerans JCM 2831]
Length = 247
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)
Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVL 117
A + +DYR R+PI++ + +D+ G G + + F+ +Y+ L
Sbjct: 34 ATTGGIDVTDYRARHPIVLTDGTRSLDVF-PTGTGHLDPRQATDVDAFMLEYRRYGRGSL 92
Query: 118 FLLIPSP--TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFAS 175
+ +P ++ R + ++ +G+ I+ Y IRLS+
Sbjct: 93 LMQVPQGVPADQVVAVERTASVLGRLGTQNGVNGREIAVTGYAVAAPTLASPIRLSFQRM 152
Query: 176 KP-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD 230
+ A CG WP+D+ + NR N GCA Q+N+AAQV +P+DL R D
Sbjct: 153 QAKVADACGLWPQDLGTSNFAIDYNNRPSWNLGCATQSNVAAQVADPVDLVRGRPEGRID 212
Query: 231 AEQRDKSIQRYR 242
+R + I + R
Sbjct: 213 TVKRVRDIGQLR 224
>gi|220922780|ref|YP_002498082.1| pilus biogenesis lipoprotein CpaD [Methylobacterium nodulans ORS
2060]
gi|219947387|gb|ACL57779.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium nodulans ORS 2060]
Length = 246
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 41 TLMLGQLFFLLLFYGTS-----ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
L + L L G A S R+PI++ + +D+ + G G +
Sbjct: 12 ALRAVSIGALALSLGACVANRAATTGSVYPSSVAARHPIVLADAPRSLDVFV-TGIGHVD 70
Query: 96 YPIHDTIRGFLEKYKNDSASVLFLLIPSPT-VSSASIRRAVKDIRKIIISSGIPVSSISE 154
D I FL +Y+ VL + +P V ++ R +R+ + G+P +
Sbjct: 71 PRQSDDIDAFLLEYRRYGRGVLVIEVPRGAQVPGPAVARTAALLRERAVGRGVPARELVV 130
Query: 155 RIYDADYGMDVDTIRLSYFASKP-SAGKCGFWPEDMLGNAKG----NRNWTNYGCAYQNN 209
Y +R+S+ + +G CG WP+D+ + G N ++ NYGC+ + N
Sbjct: 131 APYAVVNPAVAAPVRMSFQRMQARVSGACGLWPQDLGVSEPGFELRNESFWNYGCSTRAN 190
Query: 210 LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
A+Q+ +P+DL R D R + I+ R
Sbjct: 191 FASQIADPVDLVRGRQEGRIDTVSRTQDIESLR 223
>gi|170740620|ref|YP_001769275.1| pilus biogenesis lipoprotein CpaD [Methylobacterium sp. 4-46]
gi|168194894|gb|ACA16841.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Methylobacterium sp. 4-46]
Length = 249
Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 12/205 (5%)
Query: 49 FLLLFYGTS-----ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
L L G A E + + R+PI + + +D+ + G G + D +
Sbjct: 23 ALALSLGACVSNRAATTGSIEPASVQARHPIALADAPRNLDVFV-TGMGHVDPRQADDVD 81
Query: 104 GFLEKYKNDSASVLFLLIPSP-TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
FL +++ VL + +P ++ R +R+ ++ G+ + Y
Sbjct: 82 AFLLEFRRYGRGVLVIEVPRGGQAPGPAVARTAALLRERALARGVSARELVVAPYPVANA 141
Query: 163 MDVDTIRLSYFASKP-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNP 217
+RLS+ + CG WP D+ + NR N+GCAYQ+N A Q+ +P
Sbjct: 142 SVAAPVRLSFQRMQAKVTSTCGLWPNDLGVSDPAVDVSNRTHWNHGCAYQSNFARQIADP 201
Query: 218 LDLFSPRMVTPPDAEQRDKSIQRYR 242
+DL R D R + I+ R
Sbjct: 202 VDLVRGRQEGRIDTISRTQDIESLR 226
>gi|240139027|ref|YP_002963502.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
gi|240008999|gb|ACS40225.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
Length = 248
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
D R R+PI++ ++ +D+ G G I I FL +Y+ +L
Sbjct: 35 TTGSTYPIDVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILL 93
Query: 119 LLIPSPTVSSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK 176
+ +P + + + R IR++ G+P + + Y +RLS+ +
Sbjct: 94 VELPRGVSPALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANLTLASPLRLSFQRMQ 153
Query: 177 P-SAGKCGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
A KCG WP D+ + N N GCA Q+N+AAQV +P+DL R D
Sbjct: 154 AKVADKCGLWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDT 213
Query: 232 EQRDKSIQRYRQ 243
R K + + R+
Sbjct: 214 VLRTKDLGQLRE 225
>gi|296444394|ref|ZP_06886359.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
trichosporium OB3b]
gi|296258041|gb|EFH05103.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
trichosporium OB3b]
Length = 245
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYRDR+P+++ +D+ + D I+ F+++Y+ + LL P+ +
Sbjct: 48 DYRDRHPVVLADATTAIDVFP---EQRLDQATVDRIQSFVQRYRRLGHGQITLLAPTGSR 104
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP-SAGKCGFW 185
++ + R V +R+ + SG+ ++ Y +RLS+ K A +CG W
Sbjct: 105 NT-ATRAGVDAVRRQLADSGV-AGAVYVGTYPVSDADLAAPVRLSFQGIKAKVADRCGQW 162
Query: 186 PEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
PED+ + N N+GCA Q LAAQ+ +P DL SPR TP D E R +++ +
Sbjct: 163 PEDLASASSLKGWNNDTHWNFGCANQATLAAQIDDPRDLASPRGETPADIESRMRALNKV 222
Query: 242 R 242
R
Sbjct: 223 R 223
>gi|83859358|ref|ZP_00952879.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
gi|83852805|gb|EAP90658.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
Length = 218
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 77 RKVEQIVDI--PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
+ V + + A + + D I +YK L + P ++ + A
Sbjct: 30 TAAPETVRVSMDVSALDNGLTWNQIDVIEAVAAEYKARGHGPLVISYPQNAGNADAAIGA 89
Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAK 194
+ + R + +G+ IS Y+A G + S+ + A +C DM + +
Sbjct: 90 IAEARTRLYEAGLDWRQISGGAYEA-GGQASAPVIFSFTRYQAVAPECSTAWNDM-AHMR 147
Query: 195 GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
N++W +GCA NNLA V +P DL +PR V PD+ +R + RYRQ
Sbjct: 148 ANQDWPRFGCATANNLANMVADPRDLVAPRGVDAPDSARRQTVLDRYRQ 196
>gi|114568971|ref|YP_755651.1| pilus biogenesis lipoprotein CpaD [Maricaulis maris MCS10]
gi|114339433|gb|ABI64713.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Maricaulis
maris MCS10]
Length = 227
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 87 LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG 146
+ + + + +YK L + P + + A+ + R G
Sbjct: 49 VNPQDNGLTWAQQGMLAAVAAEYKARGHGPLVISYPQGAGNEDAAIGAIAEARSFFYEQG 108
Query: 147 IPVSSISERIYDADYGMDVDTIRLSYFASKPSAG-KC-GFWPEDMLGNAKGNRNWTNYGC 204
I I+ YDA + + I S+ + A +C G W D + N++ TN+GC
Sbjct: 109 IDWRVIAGGAYDARGRQNGELI-FSFTRYEAVAPAECDGSW--DQMALEFDNQHHTNFGC 165
Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
A NLAA V +P DL +PR + D +R I+ YR+
Sbjct: 166 ALAVNLAAMVADPRDLVAPRDMEAGDTGRRQTVIEGYRE 204
>gi|167648151|ref|YP_001685814.1| pilus biogenesis lipoprotein CpaD [Caulobacter sp. K31]
gi|167350581|gb|ABZ73316.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
sp. K31]
Length = 234
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ + G L ++ A + + P + R +R+ +I+ G P +S+
Sbjct: 65 GLSANQAQALDGLLNRWLAAEAREILVSAPIGGKDADVAGRMAFAVRQRLIAMGAPPASV 124
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
YDA G+ +++ + CG W + + + N+ + N+GCA N+AA
Sbjct: 125 RVVGYDAGAGLAAAPLKVGFLRYHAQVPTCGGW--ENIAATRDNKPYDNFGCAVTANMAA 182
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
QV NP DL SPR TP D+ +RD + +YR+
Sbjct: 183 QVANPEDLLSPRATTPVDSARRDTVLGKYRK 213
>gi|254420868|ref|ZP_05034592.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
sp. BAL3]
gi|196187045|gb|EDX82021.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
sp. BAL3]
Length = 205
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
I L + H +R +++ A V+ + P+ S A+ + D R +
Sbjct: 30 IALAVHEQGLSANQHAALRDLAQRFAAAGAGVIVIEAPAGEDSVAA--KTAFDTRAALAQ 87
Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGC 204
G+ + + Y + + + + + +CG + L N + +N+GC
Sbjct: 88 IGLDPNRLRVVSYAGPDPR--APVLVGFETVQAAVPRCGAAWGN-LSRTGDNMSGSNFGC 144
Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
A NLAAQ+ +P D+ +PR +TPP+A +R RYRQ
Sbjct: 145 AVTANLAAQIADPRDIAAPRALTPPEAGRRSVVFDRYRQ 183
>gi|218670939|ref|ZP_03520610.1| pilus assembly protein [Rhizobium etli GR56]
Length = 170
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 47 LFFLLLFYGTSA----LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTI 102
+ + G + L DYR R+PI++ + EQ VDIP+ + + D I
Sbjct: 30 AVSVAILSGCAGPHDQLTTGGIPDDYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLI 89
Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
RGF Y + ++ +++L P + +SA+ + +R + S GI S I Y A
Sbjct: 90 RGFAANYISRASGPVYVLSPEGSPNSAAAHQLRNHVRAELASRGIASSKIINTSYAAAGA 149
Query: 163 MDVDTIRLSYFASKPSAGKCG 183
D IRLS+ + +CG
Sbjct: 150 GDAAPIRLSFTGTTAVTTQCG 170
>gi|302381755|ref|YP_003817578.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
subvibrioides ATCC 15264]
gi|302192383|gb|ADK99954.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
subvibrioides ATCC 15264]
Length = 222
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 7/202 (3%)
Query: 42 LMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDT 101
L+ L G A + RY + + + V + + +
Sbjct: 6 LVASGALVLTGCVGLPAEGLDPAPLNPNSRYSLQVEPGIERVALAV--HDTGLSANQTRA 63
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
+ ++ + A VL + PS + I+ + +SG+ + Y A
Sbjct: 64 LEDIAGRFYAEGAPVLRIEAPSG--NDPVASEMAWRIKGALEASGVSSYQVQVVTYVAPD 121
Query: 162 GMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLF 221
+ + + + +CG + L N + N+GCA NLAAQ+ NP D+
Sbjct: 122 PR--APVLVGFDTVRAVVPQCGTGWTN-LTRTGSNAGYGNFGCAVNANLAAQIANPRDIV 178
Query: 222 SPRMVTPPDAEQRDKSIQRYRQ 243
PR +TP DA +R YRQ
Sbjct: 179 QPRTMTPVDAGRRAVVFDNYRQ 200
>gi|295690797|ref|YP_003594490.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
segnis ATCC 21756]
gi|295432700|gb|ADG11872.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
segnis ATCC 21756]
Length = 229
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ ++ + ++ L + PS +R+ +I G P +
Sbjct: 66 GLSDNQRVALQALVGRWLQAEGRELVVTAPSGAG------AMAVQVRERLIFLGAPAAH- 118
Query: 153 SERIYDADYGMDVDTI-RLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211
RI AD + + + R+ + + KCG E L + N+ + N+GCA N+A
Sbjct: 119 -VRIVGADPSLPPEPVLRVGFVRYEAEVPKCGQAWE-SLTATRDNKAYENFGCAVAANMA 176
Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
AQV NP DL PR +TP DA +RD + +YR+
Sbjct: 177 AQVANPEDLVRPRDMTPADAGRRDTVMGKYRR 208
>gi|218508708|ref|ZP_03506586.1| pilus assembly protein [Rhizobium etli Brasil 5]
Length = 150
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 143 ISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202
G I Y A D IRLS+ + +CG WP+D+ N N+N+ N+
Sbjct: 36 RREGSRARKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNF 94
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 95 GCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 134
>gi|218516618|ref|ZP_03513458.1| pilus assembly protein [Rhizobium etli 8C-3]
Length = 102
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQV
Sbjct: 1 SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNFGCATQNNLAAQVA 59
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 60 NPEDLVAPRGMTPIDAQRRNNAIQEYR 86
>gi|254293215|ref|YP_003059238.1| type IV pili component-like protein [Hirschia baltica ATCC 49814]
gi|254041746|gb|ACT58541.1| Type IV pili component-like protein [Hirschia baltica ATCC 49814]
Length = 218
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 7/189 (3%)
Query: 56 TSALAYYDEGSDYRD-RY-PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDS 113
SA + E D + I +++ +++ G G + + F+E + +D
Sbjct: 17 VSACSQSQENIDIATGNHREIEVKEQTHYLEL-TELGVGHLTPADRRRVELFVENFADDG 75
Query: 114 ASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYF 173
+ L P + RA+ IR I+ +G+ +I+ Y + + L+Y
Sbjct: 76 YGPIVLSAPDGS---REAVRAITSIRSILSRAGVLPDNITVGGYQPA-AGNAAPLVLAYK 131
Query: 174 ASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233
+ + C E + + N + ++GCA N+A + P DL R + D+ +
Sbjct: 132 SYQAHVPGCSTVNEHDWTDLRSNSSVGSFGCAVNENIAMMIAKPGDLLGERKIGDGDSSR 191
Query: 234 RDKSIQRYR 242
+ ++YR
Sbjct: 192 QLTVYEKYR 200
>gi|16127174|ref|NP_421738.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
gi|221235975|ref|YP_002518412.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
gi|7208426|gb|AAF40193.1|AF229646_5 CpaD [Caulobacter crescentus CB15]
gi|13424570|gb|AAK24906.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
gi|220965148|gb|ACL96504.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
Length = 225
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143
+I L + + + ++ A L + P ++A +IR +
Sbjct: 54 EILLKPHASGLSANQSAALEALVSRWLAAEARELVVTAP----NTAGAMAI--EIRDRLA 107
Query: 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYG 203
G + A IR+ + + KCG E+ L + N + N+G
Sbjct: 108 GLGAGARVRVVGVDPASAEEGA--IRVGFVRYEARPIKCGQRWEN-LAATRDNTVYDNFG 164
Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
CA N+AAQV NP DL PR +TP D +RD + +YR+
Sbjct: 165 CAMAANIAAQVANPEDLMRPRDMTPADTGRRDTVLGKYRR 204
>gi|304320648|ref|YP_003854291.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
HTCC2503]
gi|303299550|gb|ADM09149.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
HTCC2503]
Length = 212
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 4/160 (2%)
Query: 71 RYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSAS 130
R+PI + + + IP+ + R + + F+ Y+ + + P+ T
Sbjct: 33 RHPITVDQQAVTLTIPIDSTRSGLSRGDLQQLDRFVSAYRTKGYGPITVTAPAGTGRDLE 92
Query: 131 IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190
+R + SG+ + I + + + +S+ +CG + +
Sbjct: 93 ANETAAAVRAALNDSGVAYADIQGASVTSSTAKE---VMVSFVRYVAQGPQCGVFDNERA 149
Query: 191 GNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD 230
+ N + N+GC+ Q+NLAA + +P DL + T D
Sbjct: 150 ARFR-NLSHPNFGCSSQHNLAAMIADPRDLTRAQSTTTRD 188
>gi|114798148|ref|YP_761690.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
gi|114738322|gb|ABI76447.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
Length = 236
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 1/170 (0%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
PI + K + +++ + A GE+ I+ F+ Y L L +P + +
Sbjct: 46 PIKVEKRTEFLEVSIDAYAGELSSSDRARIQDFMRGYVRRGHGPLVLSMPQVSSNPQLAV 105
Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
AV + R I G+ IS + + L+Y + + A C N
Sbjct: 106 AAVAEARAIAWDMGVEYQEISGTA-HGSGSSVSEPMILAYQSYEAIAPNCPPKSTVDFSN 164
Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
N GC+ + NLAA +++P DL R + D +R+ ++++R
Sbjct: 165 IDSNNQMETLGCSVRTNLAAMIIDPADLLGNRPLDRSDLARREVILEKFR 214
>gi|218662338|ref|ZP_03518268.1| pilus assembly protein [Rhizobium etli IE4771]
Length = 79
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
+CG WP+D+ N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +I
Sbjct: 1 TTQCGQWPKDI-SNDFANQNYYNFGCASQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAI 59
Query: 239 QRYR 242
Q YR
Sbjct: 60 QEYR 63
>gi|83312841|ref|YP_423105.1| Type IV pili component [Magnetospirillum magneticum AMB-1]
gi|82947682|dbj|BAE52546.1| Type IV pili component [Magnetospirillum magneticum AMB-1]
Length = 236
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 4/176 (2%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR +PI++ + + A + D + E+ A + + + +
Sbjct: 30 DYRLSHPIVVEEKAAVALFARPAEGAALSDADRDRLGRLAEESARRGAGPIQISVGALPG 89
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISE-RIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
A + + + + G+ S+S DA + +R+ + A +CG +
Sbjct: 90 EEAGALAFAQTLADTLRAWGVGPVSVSVAGGADAVPQPGIAQVRV--PVWEAKAPECGNF 147
Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ N N +N+GC+ Q N A V NP DL R + D + +++Y
Sbjct: 148 ERGLNPN-YSNAPHSNWGCSIQRNKALMVQNPADLVRARETSGRDGARATTVLEKY 202
>gi|329847254|ref|ZP_08262282.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
[Asticcacaulis biprosthecum C19]
gi|328842317|gb|EGF91886.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
[Asticcacaulis biprosthecum C19]
Length = 219
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
T + A I + + ++S+ + V +SY AS P G+
Sbjct: 84 TSPDPASMAAGNAIAGYLAGRDVSRDAVSQFSVQSQPVEIVTVNVVSYRASVPGCGQT-- 141
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
W + L + N N+GCA NLAAQV +P DL P TP DA ++ + +YR+
Sbjct: 142 W--ENLAATRKNTPHANFGCAITANLAAQVADPRDLVDPATATPSDAGRKSVVLDKYRR 198
>gi|46201038|ref|ZP_00207940.1| hypothetical protein Magn03010629 [Magnetospirillum magnetotacticum
MS-1]
Length = 227
Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 7/202 (3%)
Query: 41 TLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHD 100
+L L + + G A DYR +PI + + + A + D
Sbjct: 5 RAILATLVLMPVLAGCEADLAEH---DYRLSHPIAVEEKAAVALFARPAPGAPLSDIDRD 61
Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
+ E+ A + + + + T A + + + + + G+ ++
Sbjct: 62 RLGRLAEESLRRGAGPIQITVGARTGEEADAQAFAQTLSDTMRAWGVGPVVVAVAGGADA 121
Query: 161 YGMDV-DTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
+R+ + A +CG + + L N +N+GC+ Q N A V NP D
Sbjct: 122 VPQPGLAQVRV--PVWEAKAPECGTF-DRGLNPDYANAPHSNWGCSIQRNKALMVQNPAD 178
Query: 220 LFSPRMVTPPDAEQRDKSIQRY 241
L R + DA + + +++Y
Sbjct: 179 LVRARDTSGRDANRANDVLEKY 200
>gi|315497464|ref|YP_004086268.1| pilus (caulobacter type) biogenesis lipoprotein cpad [Asticcacaulis
excentricus CB 48]
gi|315415476|gb|ADU12117.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Asticcacaulis
excentricus CB 48]
Length = 228
Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 6/151 (3%)
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ + K L + T ++ RA IR + + V ++
Sbjct: 63 GLSDNQRRALDQVAR--KASWNGGEALDMTILTANTPDALRAGAAIRAYLNDHQVSVHAV 120
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
S+ G D + L + C E+ L + N N GCA NLAA
Sbjct: 121 SQTT---AEGQPADVVSLITREYRAVVNDCNLEWEN-LAATRHNAAPQNLGCAINANLAA 176
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
Q+ +P D+ +P+ TP DA +R I +YR+
Sbjct: 177 QIDDPRDIAAPQPATPGDAGRRTVIIDKYRK 207
>gi|103486616|ref|YP_616177.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
gi|98976693|gb|ABF52844.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
Length = 213
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 17/207 (8%)
Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPI 98
++ + + L A + Y S P++ I + A GE+
Sbjct: 1 MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVV---RNSIYQFDVAAKDGELPPSE 57
Query: 99 HDTIRG-FLEKYKNDSASVLFLLIPS--PTVSSASIRRAVKDIRKIIISSGIPVSSISER 155
++G F + + PS S+ + RA+ + R +++S +PV++ +
Sbjct: 58 QGRLQGWFDAMGIRYG-DRVAIEDPSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVP 116
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
IR+ + S C W N+ N +NYGCA +NLAA V
Sbjct: 117 DGH---------IRVVVTRASASVPGCPDWNSKSSLNSL-NATSSNYGCATNSNLAAMVA 166
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+P DL T D ++IQ YR
Sbjct: 167 DPNDLIKGTRDTGHDPVAATRAIQTYR 193
>gi|149186256|ref|ZP_01864570.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
gi|148830287|gb|EDL48724.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
Length = 217
Score = 83.9 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 26/215 (12%)
Query: 35 KNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEI 94
+N R L + L L G + Y + P ++ + ++D+ +
Sbjct: 2 RNLNTRKLAGPLVVSLALALGACGGTNMSNRTLYSVKQP-VVERSNYVLDL--NTTAEGL 58
Query: 95 KYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI---IISSGIPVS 150
+ G F + + +S ++R V +I +++ G PV+
Sbjct: 59 PVSEQQRLTGWFESMGLRYG-DRVAID---DGSNSLAVRDDVAEIASRYGILVAEGAPVT 114
Query: 151 SISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNL 210
+ + A R+ S S C W + GN NYGCA +NL
Sbjct: 115 AGNLGPGQA---------RVVITRSTASVPGCPDWSH-TVEANDGNATNPNYGCATYSNL 164
Query: 211 AAQVVNPLDLFSPR---MVTPPDAEQRDKSIQRYR 242
A+ V NP DL + T K+I+ YR
Sbjct: 165 ASMVANPEDLVQGQQGTGETIVTTS--TKAIEAYR 197
>gi|296284553|ref|ZP_06862551.1| hypothetical protein CbatJ_13041 [Citromicrobium bathyomarinum
JL354]
Length = 214
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 19/203 (9%)
Query: 44 LGQLFFLLLFYGTSALAYYD-EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTI 102
+ L G A D S Y P ++ + +D + AG G + P +
Sbjct: 8 AAAMLTSALVLGLGGCAAPDFNRSLYSLNQP-VVERTHYTLD--VAAGPGGLPIPEQRRL 64
Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
G+ E D + + + + ++ + + + +++S PV+
Sbjct: 65 AGWFEALDLDYGDRVAVEADTASPATIAAVAGIVERYGLLLSDQAPVTEGFVEP------ 118
Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFS 222
R+ S + C W +D N NYGCA +N AA V NP DL
Sbjct: 119 ---GRTRVVVTRSVATVPTCPNWTDD-GDGNFANATSRNYGCATNSNYAAMVANPEDLVR 174
Query: 223 P---RMVTPPDAEQRDKSIQRYR 242
R + + R +I+ YR
Sbjct: 175 GQSSRGGSSVNGSNR--AIEAYR 195
>gi|326388863|ref|ZP_08210445.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM
19370]
gi|326206463|gb|EGD57298.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM
19370]
Length = 233
Score = 75.8 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 13/205 (6%)
Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPI 98
LR L + L + + ++ + D+P L G I+
Sbjct: 22 LRRLASATIVG-GLALALAGCGGMPTNRSLESAHQPVIERTNYTFDVPTLP-DGGIEPAQ 79
Query: 99 HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158
+ + + + P+ + + + AV R ++ +G +
Sbjct: 80 LRRLSDWFSALGLKFGDRVSIDDPASSAVTRAAVEAVMS-RFGLMLNGAAPVT------- 131
Query: 159 ADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPL 218
+ + T+R+ + S C W + N N+GCA N+AA V N
Sbjct: 132 -EGALAGGTVRIVVSRTYASVPGCPDW-KARSDANFNNATSRNFGCATNANMAAMVANKE 189
Query: 219 DLFSPR-MVTPPDAEQRDKSIQRYR 242
DL + V K+I YR
Sbjct: 190 DLVHGQTGVGDTVVMSNTKAIDTYR 214
>gi|332188354|ref|ZP_08390079.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17]
gi|332011583|gb|EGI53663.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17]
Length = 230
Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 20/177 (11%)
Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
+ ++ + + +D+ L R + G+ + + + P+
Sbjct: 32 HQPVVSQADYALDLALSGNR--LAGDEAQRFEGWARNLQLGYGDRVTIEDPAGD-----A 84
Query: 132 RRAVKDIRKIIISSGI---PVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPED 188
A + I +++ G+ P +SI A + TIR+ ++ + C W D
Sbjct: 85 PGAYRQIAEMVGRYGLLVGPAASI------ARAPLAPATIRVVVTRARATVPGCPDWRSD 138
Query: 189 MLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP--PDAEQRDKSIQRYRQ 243
+ + GN + +N+GCA NLAA V +P L P D ++I +RQ
Sbjct: 139 VAPDWVGNTS-SNHGCAINRNLAAMVADPTHLVHG-AEGPASADPAAATRAINIFRQ 193
>gi|85373130|ref|YP_457192.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
gi|84786213|gb|ABC62395.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
Length = 188
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 16/182 (8%)
Query: 63 DEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLI 121
+ Y + P ++ + +D + G G + P + G F + +
Sbjct: 3 QNRTMYSTKQP-VVERTNYTLD--VRTGPGGLSIPEQQRLSGWFEAMNLRYG-DRVSIED 58
Query: 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGK 181
P + S+ + I++S G PV+S A R+ S S
Sbjct: 59 PMLSGSTKDAISQLAGRHGILVSDGAPVTSGYVEPGSA---------RVVITRSSASVPG 109
Query: 182 CGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP-RMVTPPDAEQRDKSIQR 240
C W N YGCA NLAA V +P DL + K+++
Sbjct: 110 CPDWSV-KSEMNYTNGTHPGYGCAINGNLAAMVADPEDLVKGDEGSGETYVRRGSKAVEA 168
Query: 241 YR 242
YR
Sbjct: 169 YR 170
>gi|288956970|ref|YP_003447311.1| hypothetical protein AZL_001290 [Azospirillum sp. B510]
gi|288909278|dbj|BAI70767.1| hypothetical protein AZL_001290 [Azospirillum sp. B510]
Length = 234
Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 21/211 (9%)
Query: 42 LMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDT 101
L L ++ G + Y E + + + + + E + L+G + +
Sbjct: 12 ASLAGLLASVVLAGCTPTPLYQENTAVQQQLTVDVATAETTLS--PLSGARPLDGASVER 69
Query: 102 IRGFLEKYKNDSAS-VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
+R F+ + + + + + T VK + ++ ++G+P IS
Sbjct: 70 LRRFVME---EGNPYAVRIRL---TPGDRVADGVVKRVIAVLTAAGVPGRGISV---SMV 120
Query: 161 YGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNW---------TNYGCAYQNNLA 211
+ +RL + C D L + + + GCA NL
Sbjct: 121 NRPVGNELRLRRETATAVLPDCPPLNRDTLLDRENDTPLDLGRAPPPPPRLGCATTANLG 180
Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ +P DL P+ P + ++ RYR
Sbjct: 181 LMLADPRDLIEPQRSGPASGALAEDTVGRYR 211
>gi|85707701|ref|ZP_01038767.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1]
gi|85689235|gb|EAQ29238.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1]
Length = 214
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 23/207 (11%)
Query: 43 MLGQLFFLLLFYGTSALAYYDEGSD-YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDT 101
L L L + + Y + P++ + + R +
Sbjct: 8 KLMGAVALSLGLAVAGCGGMATNTSLYSLKQPVV---ERTNFAMDVNTNRSGLSISEQQR 64
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
+ G+ E + + PS ++ AV ++ +
Sbjct: 65 LNGWFETMDLRYGDRVAIEDPSSNP---AVAEAVNELAGR--------YGLIVTEVAPTT 113
Query: 162 GMDVDT--IRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
+ R+ S S C W N + YGCA +N+AA + NP D
Sbjct: 114 SGTLAPGQARVVITRSDASVPGCPDWST-KSDMNYNNASSPGYGCAINSNMAAMIANPED 172
Query: 220 LFSPR---MVTPPDAEQRDKSIQRYRQ 243
L + T R +I+ YR+
Sbjct: 173 LLEGQKGSGETVIATSNR--AIRTYRE 197
>gi|307293451|ref|ZP_07573297.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum
L-1]
gi|306881517|gb|EFN12733.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum
L-1]
Length = 218
Score = 68.1 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 16/176 (9%)
Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
+ ++ D+ G + + + L + + ++
Sbjct: 39 HQPVVSHTAFTYDVQAGP-DGGLTPLEARRLDDWFVS-IGLGYGDQVALATDASYYAPAL 96
Query: 132 RRAVKDIRKIIISSGIPVSSISER--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
R + DI + + A +RL + C W D
Sbjct: 97 REGIADI--------VARHGMLVGEDSSAAAGSAPQGAVRLIVRRATARVPGCPDW-SDK 147
Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243
+ N+GC NLAA + NP DL + T D +++I YR+
Sbjct: 148 PETDQQLGASANFGCGVNGNLAAMIANPEDLVRGQT-TDSDLRTATSNRAISTYRE 202
>gi|294012434|ref|YP_003545894.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S]
gi|292675764|dbj|BAI97282.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S]
Length = 222
Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 61/213 (28%), Gaps = 17/213 (7%)
Query: 35 KNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEI 94
K L + LG L + L + + ++ D+ G +
Sbjct: 7 KTLLLFGVRLGTLALMALPLSAC-QTDQAANRGVQSVHQPVVSNAAFTYDVQAGP-DGGL 64
Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISE 154
+ + + S ++R + D+ + +
Sbjct: 65 TASEARRLDDWFVS-IGLGYGDQVAIATDAGYYSPALREGIADV--------VARHGMLV 115
Query: 155 R--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
+RL + S C W D + TN+GC NLAA
Sbjct: 116 GEDGTAVAGAAPQGAVRLIVRRAIASVPGCPDW-SDKPETDQQLGTSTNFGCGVNGNLAA 174
Query: 213 QVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243
+ NP DL + T D +++I YR+
Sbjct: 175 MIANPEDLVRGQT-TDSDLRTATSNRAISTYRE 206
>gi|87199100|ref|YP_496357.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM
12444]
gi|87134781|gb|ABD25523.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM
12444]
Length = 223
Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 11/200 (5%)
Query: 44 LGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
F L L SA + E + ++ + + D+ L G G + +
Sbjct: 9 TASAFVLSLGIALSACSSVPENRMLTSVHQPVVERNHFVFDLETLPG-GGLSITEQRRLA 67
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
G+ E + + P + ++ S AV ++++ G Y A
Sbjct: 68 GWFESLGLKYGDKIAVDDPLQSKATLSAVDAVAGRWGLMLADGAAP---VTPGYVAPGA- 123
Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
+R+ + S C W E N TN+GCA +NLAA V + L
Sbjct: 124 ----VRVVVTRATASVPGCPSW-EYNSDMTLNNHTSTNFGCAVNSNLAAMVADKEHLIQG 178
Query: 224 R-MVTPPDAEQRDKSIQRYR 242
K+I YR
Sbjct: 179 ASGTGETVVMSSTKAIDSYR 198
>gi|149912020|ref|ZP_01900614.1| putative lipoprotein [Moritella sp. PE36]
gi|149804919|gb|EDM64953.1| putative lipoprotein [Moritella sp. PE36]
Length = 215
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 16/197 (8%)
Query: 46 QLFFLLLFYGT-SALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG 104
++F +L+ G SA A D R P + + I L + +
Sbjct: 10 RIFSILIMCGLLSACAI-----DSVQRQPQVKVEAV-THKIALQLDTEALTKSDKTALNE 63
Query: 105 FLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD 164
F+ ++ S L + I S + + V + ++ ++G+ S ++ ++ ++ D
Sbjct: 64 FI--FQRGELSALRIRIDSYSDKGTNA---VPALIALLKNAGVYPSQVTSQLSESSSTAD 118
Query: 165 VDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR 224
+ I SY + P C E + N + N+GCA + LA V P DL R
Sbjct: 119 IALIVESYRSIVP---NCHAGKESHTVLNEFNSS-PNFGCANASALAQMVATPRDLIVGR 174
Query: 225 MVTPPDAEQRDKSIQRY 241
+ D + +++ Y
Sbjct: 175 TLDATDGRKAVATVEAY 191
>gi|227326303|ref|ZP_03830327.1| putative lipoprotein [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 228
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 79/233 (33%), Gaps = 37/233 (15%)
Query: 29 LKTIFWKNFFLRTL--MLGQLFFLLLFYGTSALAYYDEGSDYRDR-------YPILMRKV 79
+KTI LR L + L ++L G +D R + PI ++
Sbjct: 1 MKTINNSYPLLRPLHMRVAVLTAVVLLAGCGWNKPI---NDVRMQRFDQPGLQPIAVQ-- 55
Query: 80 EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTVSSASIRR 133
V +PLL RGFL + L + SAS +
Sbjct: 56 PSSVSVPLLVAPNG---------RGFLPESLRQLNIMLKDQGRLSAQTLTLIPHSASGEQ 106
Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193
+ ++ ++G ++ + G + D +S A +C N
Sbjct: 107 MAGRLVTVLKNAGANPQNVKQMRRSTASGQNGDLEVIS-EALVVKTTRCTI----NDPNQ 161
Query: 194 KGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ + + GCA QNNLA V P DL + + D SI+RY +
Sbjct: 162 LMVKPYEAMGSLGCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214
>gi|94497255|ref|ZP_01303827.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58]
gi|94423360|gb|EAT08389.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58]
Length = 215
Score = 65.8 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 21/178 (11%)
Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTVSSAS 130
+ ++ D+ +G + + F+ V + +
Sbjct: 35 HQPVVSHAAYTFDVMAGSGDT-LPPAEAARLNDWFVSIGLGYGDQVAIV-------NDGY 86
Query: 131 IRRAVKD-IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
A+++ I ++ G+ + E +IRL + S C W
Sbjct: 87 YGPALREGIANVVARHGL---LVGEDSSAIAGAAPQGSIRLIVRRATASVPGCPDWSAKQ 143
Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD----KSIQRYRQ 243
+ +N+GC +NLAA V NP DL + D++ R ++I YR+
Sbjct: 144 ESEMTLGTS-SNFGCGVNSNLAAMVANPEDLVRGQS---SDSDLRTATSNRAISTYRE 197
>gi|84386796|ref|ZP_00989821.1| putative lipoprotein [Vibrio splendidus 12B01]
gi|84378324|gb|EAP95182.1| putative lipoprotein [Vibrio splendidus 12B01]
Length = 207
Score = 65.8 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 9/148 (6%)
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ I F+ + L L+ ++ + +R +I SG+ S IS
Sbjct: 46 LSAQEKADISDFIAR-----RGTLSNLMVKIENTTQKGESQSEKVRLRLIESGLYPSQIS 100
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
A D+ TI + + +K +A G P L + R N+GCA N LA
Sbjct: 101 VSDTAAQGKGDI-TIFVESYRAKVTACDAGKTPRTTLNAYRTQR---NFGCANANALAQM 156
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
V NP DL + + ++ SI Y
Sbjct: 157 VANPKDLIVGQPIDSAQGQKAVSSIDNY 184
>gi|253687069|ref|YP_003016259.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753647|gb|ACT11723.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 228
Score = 65.4 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 74/226 (32%), Gaps = 35/226 (15%)
Query: 34 WKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDR-------YPILMRKVEQIVDIP 86
+ F L L + L G +D R + PI ++ V +P
Sbjct: 8 YPPFRPLPLRAAVLTAVFLLAGCGWNKPI---NDVRMQRFDQPALQPIAVQ--PSSVSVP 62
Query: 87 LLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTVSSASIRRAVKDIRK 140
LLA RGFL + L + SAS + +
Sbjct: 63 LLAAPNG---------RGFLPESLKQLNIMLKDQGRLSAQTITLIPHSASGEQMAGRLAT 113
Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWT 200
++ ++G ++ + G + D +S A +C N + +
Sbjct: 114 VLKNAGANPQNVKQMRRSTASGQNGDLEVIS-EALVVKTTRCTI----NDPNQLMVKPYE 168
Query: 201 ---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ GCA QNNLA V P DL + + D SI+RY +
Sbjct: 169 AIGSLGCATQNNLAMMVAEPRDLIQAKALDDADGVAAVNSIERYHK 214
>gi|227114877|ref|ZP_03828533.1| putative lipoprotein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 228
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 23/214 (10%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGSDYRDR-------YPILMRKVEQIVDIPLLAGRG 92
R + L ++L G +D R + PI ++ V + +
Sbjct: 14 RHMRAAVLTAVVLLAGCGWNKPI---NDVRMQRFDQPGLQPIAVQPSSVSVPLLVAPNGR 70
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ L+ SA L LIP T R ++ ++G ++
Sbjct: 71 GFLPESLKQLNIMLKDQGRLSAQTLT-LIPHSTSGEQMAGRLA----TVLKNAGANPQNV 125
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWT---NYGCAYQNN 209
+ G + D +S A +C N + + + GCA QNN
Sbjct: 126 KQMRRSTASGQNGDLEVIS-EALVVKTTRCTI----NDPNQLMVKPYEAIGSLGCATQNN 180
Query: 210 LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
LA V P DL + + D SI+RY +
Sbjct: 181 LAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214
>gi|261820215|ref|YP_003258321.1| pilus biogenesis lipoprotein CpaD [Pectobacterium wasabiae WPP163]
gi|261604228|gb|ACX86714.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
[Pectobacterium wasabiae WPP163]
Length = 228
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 27/218 (12%)
Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDR-------YPILMRKVEQIVDIPLLAGR 91
LR L + +F S + +D R + P+ ++ V +PLL
Sbjct: 11 LRRLHISAAVLTAVFL-LSGCGWNKPINDVRMQRFDQPALQPVAVQ--PSSVSVPLLVAP 67
Query: 92 GEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTVSSASIRRAVKDIRKIIISS 145
RGFL + L + SAS + + ++ ++
Sbjct: 68 NG---------RGFLPESLRQLNIMLKDQGRLSAQTLTLIPHSASGEQMAGRLATVLKNA 118
Query: 146 GIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCA 205
G ++ + G D +S + P ++ + GCA
Sbjct: 119 GADAQNVKQMRRSTASGQTGDLEVISEALVVKTTRCTINDPNQLMVKPFDGIGY--LGCA 176
Query: 206 YQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
QNNLA V P DL + + D SI+RY +
Sbjct: 177 TQNNLAMMVAEPRDLIQAKALDNADGVAAVNSIERYHK 214
>gi|148557760|ref|YP_001265342.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
gi|148502950|gb|ABQ71204.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
Length = 252
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 22/203 (10%)
Query: 43 MLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTI 102
+LG L + L + Y+ G + ++++ + ++D+P + D +
Sbjct: 50 ILGTLGIIALAATPALADRYNRG--VESVHQPVVQRSDYVLDVP----ADGLDPAARDRV 103
Query: 103 RGFLEKYKNDSAS---VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159
+ + + + + + +DI +I G+ V S + A
Sbjct: 104 ---GQWFDAIGLGYGDRIAIDTSAGG------TGSNRDIAEIAGRYGLFVGSAAPMTEGA 154
Query: 160 DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
V + AS P W + A +NYGCA + LAA V NP D
Sbjct: 155 IAPGHVRIVVSRSTASVPGCPDYSQWSQPNFTAAAS----SNYGCAINSTLAAMVANPED 210
Query: 220 LFSPRMVTPPDAEQRDKSIQRYR 242
L + +A+ K+I+ +R
Sbjct: 211 LVKGQAARGSNADTATKAIRIWR 233
>gi|260778161|ref|ZP_05887054.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450]
gi|260606174|gb|EEX32459.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450]
Length = 208
Score = 62.7 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 12/177 (6%)
Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS-VLFLLIPSP 124
SD R P + V + L + + IR F+ L + + S
Sbjct: 19 SDQIARQP-AIDVVSVTNKLTLAVEKQSLTPQQQQDIRSFI---VQRGNPYSLRVKLVSY 74
Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ S +K I +++ G+ I DV I S+ A P G
Sbjct: 75 SPKGQSQ---IKPISNLLLGQGLAKHQIMTERATGTQSGDVQVIVESFRAKVPGCGTDKS 131
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
P + YGC+ LA V NP DL + P + + +I Y
Sbjct: 132 QP----VIFNQYKTHQAYGCSNAAALAQMVANPKDLVVGEKLGPTNGAKAVAAIDAY 184
>gi|261251597|ref|ZP_05944171.1| putative lipoprotein [Vibrio orientalis CIP 102891]
gi|260938470|gb|EEX94458.1| putative lipoprotein [Vibrio orientalis CIP 102891]
Length = 206
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 32/200 (16%)
Query: 49 FLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDI-------PLLAGRGEIKYPIHDT 101
L+L G S+ PI + +D+ L +
Sbjct: 8 ALVLLGGCSSS-------------PI---EKAPALDVVSVTNKLTLAMQSSSLSAKQSKA 51
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
+ +++ K + L+ S S +R + I ++I GI +I +
Sbjct: 52 VEQLVQR-KGSPYGLNVKLVSL----SKSGQRGLNQIEALLIDQGIAAKNIHREHLAENG 106
Query: 162 GMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLF 221
DV + S+ A P + + + + K ++GCA LA V NP DL
Sbjct: 107 KGDVQILIESFKAKVPKC-QAQKYSNNFINRYKE---HPSFGCATSVALAQMVANPKDLV 162
Query: 222 SPRMVTPPDAEQRDKSIQRY 241
+ + + +I Y
Sbjct: 163 VGEQLGATNGAKAVATIDGY 182
>gi|19749314|gb|AAL98684.1| Y4xK [Sinorhizobium fredii]
Length = 188
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 27/191 (14%)
Query: 53 FYGTSALAY-YDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKN 111
G ++ A Y E S PI +R+ ++ + + + FL K
Sbjct: 16 LAGCTSTAPIYVEQST-----PIFVRQESTVLKL------ESLHASEQQRLLAFLWKASR 64
Query: 112 DSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLS 171
L L+I + SS AV R++ GI S+I D +R+
Sbjct: 65 GRRDALHLVI---SGSSRLSAEAVHQARQM----GIGASNI-----HLLDQNDRGQLRVE 112
Query: 172 YFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
C +L + ++ GC+ +NLA + +P DL R V P D
Sbjct: 113 AVVYHALPPICRSLSSQLLNDEFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDG 169
Query: 232 EQRDKSIQRYR 242
++ + YR
Sbjct: 170 DRAAIPVTTYR 180
>gi|251789647|ref|YP_003004368.1| pilus biogenesis lipoprotein CpaD [Dickeya zeae Ech1591]
gi|247538268|gb|ACT06889.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Dickeya zeae
Ech1591]
Length = 223
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 7/151 (4%)
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ ++ L + S L + T +A + + + ++G S I
Sbjct: 66 GLDADSLASLNQLLNQQGRVSKQTLTI-----TPWTARGEQIASRLANALENAGADKSRI 120
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
D LS A C +L + GCA Q+NLA
Sbjct: 121 RVMTRVPAVNQSGDLQVLS-QALAARVPACQVNDAGLLMVKPFDAVGY-LGCANQSNLAQ 178
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
V P DL R + D SI+RY+Q
Sbjct: 179 MVAEPRDLIQARSLDAADGVNMVNSIERYQQ 209
>gi|312883755|ref|ZP_07743474.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368504|gb|EFP96037.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 206
Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 49 FLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDI--------PLLAGRGEIKYPIHD 100
L+L G S+ PI + +D+ ++ G +
Sbjct: 8 ALVLLGGCSSS-------------PI---ERAPALDVVSVTNKLTFVMQGSF-LSAEQSK 50
Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
+ F+++ K + L+ S S +R++ + ++I GI V +I +
Sbjct: 51 AVEQFVQR-KGSPYGLNVKLVSL----SKSGQRSLDQVEALLIEQGIAVKNIHREHLTKE 105
Query: 161 YGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDL 220
DV + S+ A P P + N+ ++ ++GCA L V NP DL
Sbjct: 106 GKGDVQILIESFKAKIPKCRVKK--PSNTFINSY--KSHPSFGCATSVALGQMVANPKDL 161
Query: 221 FSPRMVTPPDAEQRDKSIQRY 241
+ + + +I+ Y
Sbjct: 162 VVGEQLGATNGAKAVATIEGY 182
>gi|294139871|ref|YP_003555849.1| hypothetical protein SVI_1100 [Shewanella violacea DSS12]
gi|293326340|dbj|BAJ01071.1| hypothetical protein [Shewanella violacea DSS12]
Length = 208
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%)
Query: 67 DYRDRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
D R P I + V + + LLA + + FL + + L + I + +
Sbjct: 19 DPIQRQPNIAIEAVTHVFSLRLLAET--LDGEDRAALEEFLL--RRGDPANLRVRIETHS 74
Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSI-SERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
+ + + +R ++ I S I + + A D+ + SY G
Sbjct: 75 LRG---EKVLTSVRDLMHLRNIYPSQIRTLKRESASTSEDLTLVVESYRTLVRHCDA-GK 130
Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
P+ +L + K + N+GCA + LA V NP DL ++ + + ++ Y
Sbjct: 131 EPKTILNSFKRS---ANFGCANASALAQMVANPRDLVVGETLSATEGRKAVSTLDAY 184
>gi|50119735|ref|YP_048902.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043]
gi|49610261|emb|CAG73704.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043]
Length = 228
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 25/227 (11%)
Query: 29 LKTIFWKNFFLRTL--MLGQLFFLLLFYGTSALAYYDEGSDYRDR-------YPILMRKV 79
+KTI + R L L + L G +D R + PI ++
Sbjct: 1 MKTINSNHPPFRPLHVRAAVLTAVFLLAGCGWNKPI---NDVRMQRFDQPALQPIAVQPS 57
Query: 80 EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
V + + + L+ SA L L+ SAS + +
Sbjct: 58 SVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLTLI-----PHSASGEQMAGRLA 112
Query: 140 KIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNW 199
++ ++G ++ + G D +S A +C N + +
Sbjct: 113 TVLKNAGANAQNVKQMRRSTASGQTGDLEVIS-EALVVKTTRCTI----NDPNQLMVKPY 167
Query: 200 T---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA QNNLA V P DL + + D SI+RY +
Sbjct: 168 EAIGTLGCATQNNLAMIVAEPRDLIQAKALDGADGVAAVNSIERYHK 214
>gi|13475295|ref|NP_106859.1| hypothetical protein mlr8762 [Mesorhizobium loti MAFF303099]
gi|14026046|dbj|BAB52645.1| mlr8762 [Mesorhizobium loti MAFF303099]
Length = 186
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 23/170 (13%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
PIL+R ++ + ++ +R FL++ + L LLI +
Sbjct: 32 PILIRPETTVLIL------KSLRASERQRLRVFLDRTSSGRRDALHLLI-WGS------S 78
Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
R ++ GI +I D +++ C + +L +
Sbjct: 79 RLSAEVVHQARQMGIDTYNI-----HLLDQHDGGAVQVEAIVYHARPPACPSYS--LLSD 131
Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+ GC+ + NLAA V +P DL + V P D E+ + YR
Sbjct: 132 KSFEKP---LGCSTRRNLAAMVNDPRDLLDNQAVEPSDGERAAIPVATYR 178
>gi|237678813|emb|CAQ57540.1| hypothetical protein [Bradyrhizobium elkanii]
Length = 221
Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
++ +R F+ L + + + + R + + + GI +
Sbjct: 46 QSLRGSERHRLRNFIAHASGGRRDALHIDV-TGSP------RLIAQVAHEARAMGIAPYN 98
Query: 152 ISERIYDADYGMDVDTIRL---SYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQN 208
I D +R+ ++ A P + N GC+ +N
Sbjct: 99 IRLAASPIDLPARFG-VRIEAITFEAHPPVCPSLSI----VGPAVNDNSFDPTLGCSTRN 153
Query: 209 NLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
NLA V +P+DL R V ++ + Y
Sbjct: 154 NLAVMVNDPIDLLDNRSVMTSSGDRAASPLASY 186
>gi|148976306|ref|ZP_01813030.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
gi|145964400|gb|EDK29655.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
Length = 195
Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 9/148 (6%)
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ I F+ + L L+ T ++ ++ +R +I SG+ S I
Sbjct: 34 LSDQEKADISDFMSR-----RGALNNLMVKITKTTLKGESQIEKVRLHLIESGLYPSQIW 88
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
+ D+ + SY A + G P + + R N+GCA N LA
Sbjct: 89 VADEATEGKGDITILVESYRAKVTACDA-GKTPRTTVNAYRTQR---NFGCANANALAQM 144
Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
V NP DL + ++ ++ SI+ Y
Sbjct: 145 VANPKDLIVGQPISGTQGQKAVSSIENY 172
>gi|323493502|ref|ZP_08098624.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546]
gi|323312325|gb|EGA65467.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546]
Length = 206
Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 32/200 (16%)
Query: 49 FLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGR-------GEIKYPIHDT 101
L+L G ++ PI + +D+ + + + +
Sbjct: 8 ALVLLGGCTST-------------PI---EKAPALDVVSVTNKLTLKLNGATLSSKQSEG 51
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
I+ F E+ K + V L+ SA + +++ I +++I+ GI ++I
Sbjct: 52 IQQFFER-KGLAYGVKVKLV----SYSAIGKSSLEQIEQLLIAQGIAANNIQRVDSKEQS 106
Query: 162 GMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLF 221
DV + S+ +P + + L + ++GCA LA V NP DL
Sbjct: 107 QGDVQILAESFKVKQPKC-HVQKYSNNFLNRY---KQHPSFGCANSVALAQMVANPKDLV 162
Query: 222 SPRMVTPPDAEQRDKSIQRY 241
+ P + + SI+ Y
Sbjct: 163 VGEKLGPTNGAKAVSSIEGY 182
>gi|319940441|ref|ZP_08014786.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis
3_1_45B]
gi|319806067|gb|EFW02816.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis
3_1_45B]
Length = 274
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 115 SVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSY-- 172
+ + + S + + + + + +G ++ + + D R+S+
Sbjct: 126 GPIRRQVLTVVPLSERGEKLARRLAEALEEAGAQEPKLAVYVNEKTGKRDFPDRRVSWDL 185
Query: 173 ----FASKPSAGKC-----GFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
A A +C W + GCA N+A V +P DL P
Sbjct: 186 ELISEAYVVHAPECEVADPTRWTIEPYEAVGT------LGCANNANIAMMVSDPKDLLRP 239
Query: 224 RMVTPPDAEQRDKSIQRYR 242
R + D + ++Q+Y+
Sbjct: 240 RALEGADGTASNLAVQKYQ 258
>gi|16520027|ref|NP_444147.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii
NGR234]
gi|2496775|sp|P55703|Y4XK_RHISN RecName: Full=Uncharacterized lipoprotein y4xK; Flags: Precursor
gi|2182719|gb|AAB91934.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii
NGR234]
Length = 188
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 27/191 (14%)
Query: 53 FYGTSALAY-YDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKN 111
G ++ A Y E PI +R+ ++ + + FL K
Sbjct: 16 LAGCTSTAPIYVEQPT-----PIFVRQESTVLKL------ESFHASEQQRLLAFLWKASR 64
Query: 112 DSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLS 171
L L+I + SS AV R++ GI S+I D +R+
Sbjct: 65 GRRDALHLVI---SGSSRLSAEAVHQARQM----GIGASNI-----HLLDQNDRGHLRIE 112
Query: 172 YFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDA 231
C +L + ++ GC+ +NLA + +P DL R V P D
Sbjct: 113 AVVYHALPPICRSLSSQLLNDEFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDG 169
Query: 232 EQRDKSIQRYR 242
++ + YR
Sbjct: 170 DRAAIPVTTYR 180
>gi|326797328|ref|YP_004315148.1| pilus biogenesis CpaD-related protein [Marinomonas mediterranea
MMB-1]
gi|326548092|gb|ADZ93312.1| Pilus biogenesis CpaD-related protein [Marinomonas mediterranea
MMB-1]
Length = 224
Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 38/226 (16%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLL----------- 88
+ + FLL G + + E+ ++
Sbjct: 1 MRIFSISIVFLLFLSGCDHTVHRLRNGS---------SEAEKGTPAFVVKPTVSSISLQL 51
Query: 89 AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP 148
G +K D + L S+ V+ L + + + ++ ++S G+
Sbjct: 52 QENGSLKKSALDGLNALLRNQGRLSSQVIRLQPYTDKGNVFASH-----LKDSLLSLGVQ 106
Query: 149 VSSISERI--YDA--------DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLG-NAKGNR 197
S + Y A + D + L+ A C ED +
Sbjct: 107 ESKLKILPIQYQATTIKPDLENDKQDKWDLSLTSEAMVVVTKDCSI--EDSQAWSVHSYE 164
Query: 198 NWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
+ GCA + N+A V +P DL R + D +++ RY +
Sbjct: 165 SIGTLGCANRANIAQMVSDPRDLIRGRTLDDADGVHAVEAMTRYHE 210
>gi|27376952|ref|NP_768481.1| hypothetical protein bll1841 [Bradyrhizobium japonicum USDA 110]
gi|12620549|gb|AAG60825.1|AF322012_130 ID279 [Bradyrhizobium japonicum]
gi|27350094|dbj|BAC47106.1| bll1841 [Bradyrhizobium japonicum USDA 110]
Length = 220
Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 132 RRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM-- 189
+ + + + G+ S+I + +R+ + C P +
Sbjct: 79 HKLIAQVAHEARAMGVVPSNIRLSASPLNLSGRSA-VRIEAITFEAHLPNC---PSLLIA 134
Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233
N GC+ +NNL V +PLDL R V+ + ++
Sbjct: 135 GPAVDDNSFEPTLGCSTKNNLGVMVNDPLDLVDNRSVSTVNGDR 178
>gi|78062905|ref|YP_372813.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383]
gi|77970790|gb|ABB12169.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383]
Length = 126
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 170 LSYFASKPSAGKCGFW--PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVT 227
+ + + A C P ++ R +GCA +NLAA + P DL +P
Sbjct: 33 IGFDGAHAVAPDCAKLMQPSHLVDAGFA-RPGVPFGCATYSNLAAMLARPEDLVAPVPYG 91
Query: 228 PPDAEQRDKSIQRY 241
DA+ +++RY
Sbjct: 92 GADAQTAADAVRRY 105
>gi|152994348|ref|YP_001339183.1| pilus biogenesis lipoprotein CpaD [Marinomonas sp. MWYL1]
gi|150835272|gb|ABR69248.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Marinomonas
sp. MWYL1]
Length = 214
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 140 KIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC-----GFW---PEDMLG 191
+ ++ G+ S+ + + + A C W P D +G
Sbjct: 98 QSLLELGVQGESLLIQPLVYQKAETTWDLSVVSEAIIVVTPDCVIEDSTTWSVKPFDAVG 157
Query: 192 NAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
GCA ++N+A VVNP DL R + D +++RY +
Sbjct: 158 T---------LGCANRSNIARMVVNPRDLIRARTLDSADGINAVGAVKRYHE 200
>gi|298294453|gb|ADI75483.1| putative lipoprotein [Sinorhizobium fredii]
Length = 54
Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
GC+ +NLA + +P DL R V P D ++ + YR
Sbjct: 7 GCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 46
>gi|90406749|ref|ZP_01214942.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3]
gi|90312202|gb|EAS40294.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3]
Length = 211
Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 158 DADYGMDVDTIRLSYF--ASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
++ + + A C +D + N+GCA N LA +
Sbjct: 103 GPQEKQQASAADFTFVVESYRALARHC-QAQKDASIILNNFKRNPNFGCANSNALALMIA 161
Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRY 241
NP +L + P + + I+ Y
Sbjct: 162 NPRELLRSATLAPMEGRKAVSIIESY 187
>gi|313813485|gb|EFS51199.1| type III restriction enzyme, res subunit [Propionibacterium acnes
HL025PA1]
Length = 862
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DY P +M Q++++ G+ + + F+E + + ++ P TV
Sbjct: 41 DYD---PTVM----QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTV 86
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
+ +++ + I + +P ++ + Y A RL++ P
Sbjct: 87 QAKTVQNFTPGTPRYITGAAVPPEVVTPQDYSAWIARQNGPARLAFGREVP 137
>gi|167841782|ref|ZP_02468466.1| hypothetical lipoprotein [Burkholderia thailandensis MSMB43]
Length = 139
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
A C + +A R ++GCA NLAA + P DL +P DA
Sbjct: 55 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 114
Query: 236 KSIQRY 241
+++RY
Sbjct: 115 SAVRRY 120
>gi|83720007|ref|YP_442979.1| lipoprotein [Burkholderia thailandensis E264]
gi|167581960|ref|ZP_02374834.1| hypothetical lipoprotein [Burkholderia thailandensis TXDOH]
gi|167620124|ref|ZP_02388755.1| hypothetical lipoprotein [Burkholderia thailandensis Bt4]
gi|257139203|ref|ZP_05587465.1| lipoprotein [Burkholderia thailandensis E264]
gi|83653832|gb|ABC37895.1| hypothetical lipoprotein [Burkholderia thailandensis E264]
Length = 139
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
A C + +A R ++GCA NLAA + P DL +P + DA
Sbjct: 55 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYSGADAALGA 114
Query: 236 KSIQRY 241
+++RY
Sbjct: 115 SAVRRY 120
>gi|126452011|ref|YP_001066151.1| putative lipoprotein [Burkholderia pseudomallei 1106a]
gi|167911032|ref|ZP_02498123.1| putative lipoprotein [Burkholderia pseudomallei 112]
gi|226196379|ref|ZP_03791961.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9]
gi|242317370|ref|ZP_04816386.1| putative lipoprotein [Burkholderia pseudomallei 1106b]
gi|254297712|ref|ZP_04965165.1| putative lipoprotein [Burkholderia pseudomallei 406e]
gi|126225653|gb|ABN89193.1| putative lipoprotein [Burkholderia pseudomallei 1106a]
gi|157807160|gb|EDO84330.1| putative lipoprotein [Burkholderia pseudomallei 406e]
gi|225931596|gb|EEH27601.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9]
gi|242140609|gb|EES27011.1| putative lipoprotein [Burkholderia pseudomallei 1106b]
Length = 137
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
+ D TI A C + +A R ++GCA NLAA
Sbjct: 30 MSGHPPYGMPDASTIGYDARTGLARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAA 89
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ P DL +P DA +++RY
Sbjct: 90 MLARPADLVAPLPYAGADAALGASAVRRY 118
>gi|53719430|ref|YP_108416.1| putative lipoprotein [Burkholderia pseudomallei K96243]
gi|76808779|ref|YP_333436.1| putative lipoprotein [Burkholderia pseudomallei 1710b]
gi|121601162|ref|YP_993005.1| putative lipoprotein [Burkholderia mallei SAVP1]
gi|124386034|ref|YP_001026337.1| putative lipoprotein [Burkholderia mallei NCTC 10229]
gi|126439464|ref|YP_001058909.1| putative lipoprotein [Burkholderia pseudomallei 668]
gi|126448960|ref|YP_001080389.1| putative lipoprotein [Burkholderia mallei NCTC 10247]
gi|134282244|ref|ZP_01768949.1| putative lipoprotein [Burkholderia pseudomallei 305]
gi|167919048|ref|ZP_02506139.1| lipoprotein, putative [Burkholderia pseudomallei BCC215]
gi|217421405|ref|ZP_03452909.1| putative lipoprotein [Burkholderia pseudomallei 576]
gi|237812166|ref|YP_002896617.1| putative lipoprotein [Burkholderia pseudomallei MSHR346]
gi|254178529|ref|ZP_04885184.1| putative lipoprotein [Burkholderia mallei ATCC 10399]
gi|254179871|ref|ZP_04886470.1| putative lipoprotein [Burkholderia pseudomallei 1655]
gi|254188723|ref|ZP_04895234.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237]
gi|254197664|ref|ZP_04904086.1| putative lipoprotein [Burkholderia pseudomallei S13]
gi|254261709|ref|ZP_04952763.1| putative lipoprotein [Burkholderia pseudomallei 1710a]
gi|254358539|ref|ZP_04974812.1| putative lipoprotein [Burkholderia mallei 2002721280]
gi|52209844|emb|CAH35816.1| putative lipoprotein [Burkholderia pseudomallei K96243]
gi|76578232|gb|ABA47707.1| putative lipoprotein [Burkholderia pseudomallei 1710b]
gi|121229972|gb|ABM52490.1| lipoprotein, putative [Burkholderia mallei SAVP1]
gi|124294054|gb|ABN03323.1| putative liporotein [Burkholderia mallei NCTC 10229]
gi|126218957|gb|ABN82463.1| putative lipoprotein [Burkholderia pseudomallei 668]
gi|126241830|gb|ABO04923.1| putative liporotein [Burkholderia mallei NCTC 10247]
gi|134246282|gb|EBA46371.1| putative lipoprotein [Burkholderia pseudomallei 305]
gi|148027666|gb|EDK85687.1| putative lipoprotein [Burkholderia mallei 2002721280]
gi|157936402|gb|EDO92072.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237]
gi|160699568|gb|EDP89538.1| putative lipoprotein [Burkholderia mallei ATCC 10399]
gi|169654405|gb|EDS87098.1| putative lipoprotein [Burkholderia pseudomallei S13]
gi|184210411|gb|EDU07454.1| putative lipoprotein [Burkholderia pseudomallei 1655]
gi|217395147|gb|EEC35165.1| putative lipoprotein [Burkholderia pseudomallei 576]
gi|237504103|gb|ACQ96421.1| putative lipoprotein [Burkholderia pseudomallei MSHR346]
gi|254220398|gb|EET09782.1| putative lipoprotein [Burkholderia pseudomallei 1710a]
Length = 137
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
+ D TI A C + +A R ++GCA NLAA
Sbjct: 30 MSGHPPYGMPDASTIGYDARTGLARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAA 89
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ P DL +P DA +++RY
Sbjct: 90 MLARPADLVAPLPYAGADAALGASAVRRY 118
>gi|167902786|ref|ZP_02489991.1| putative lipoprotein [Burkholderia pseudomallei NCTC 13177]
Length = 115
Score = 44.6 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
+ D TI A C + +A R ++GCA NLAA
Sbjct: 8 MSGHPPYGMPDASTIGYDARTGLARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAA 67
Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
+ P DL +P DA +++RY
Sbjct: 68 MLARPADLVAPLPYAGADAALGASAVRRY 96
>gi|50843080|ref|YP_056307.1| putative type III restriction enzyme [Propionibacterium acnes
KPA171202]
gi|50840682|gb|AAT83349.1| putative type III restriction enzyme [Propionibacterium acnes
KPA171202]
gi|315106920|gb|EFT78896.1| type III restriction enzyme, res subunit [Propionibacterium acnes
HL030PA1]
Length = 862
Score = 44.6 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DY P +M Q++++ G+ + + F+E + + ++ P TV
Sbjct: 41 DYD---PTVM----QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTV 86
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
+ +++ + I S +P ++ + Y A ++L++ P
Sbjct: 87 QAKTVQNFTPGSSRYITGSALPPEVVTPQDYSAWIARQNGPVQLAFGRETP 137
>gi|167590423|ref|ZP_02382811.1| hypothetical protein BuboB_34117 [Burkholderia ubonensis Bu]
Length = 117
Score = 42.3 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 202 YGCAYQNNLAAQVVNPLDLFSP 223
+GCA NLAA + P DL +P
Sbjct: 56 FGCATYRNLAAMLARPEDLVAP 77
>gi|297627293|ref|YP_003689056.1| type III restriction enzyme [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923058|emb|CBL57642.1| Putative type III restriction enzyme [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 857
Score = 41.9 bits (97), Expect = 0.068, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 78 KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKD 137
V+Q++++ G+ + + F+E + + ++ P TV + +++
Sbjct: 45 DVQQVLNLATGVGKTYL-------MTAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPG 97
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
+ I S +P ++ + Y A LS+ P
Sbjct: 98 SSRFITGSPVPPEVVTPQDYSAWIARTNGAAMLSFGREVP 137
>gi|319941901|ref|ZP_08016222.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis
3_1_45B]
gi|319804554|gb|EFW01424.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis
3_1_45B]
Length = 207
Score = 41.5 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 201 NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
N+ A NLA Q P DL +PR + P+ + ++ RY++
Sbjct: 146 NFAHATARNLAQQAAVPSDLETPRALGDPNPQAAIGAVDRYQR 188
>gi|116620655|ref|YP_822811.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076]
gi|116223817|gb|ABJ82526.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076]
Length = 456
Score = 41.5 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 18/180 (10%)
Query: 44 LGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
G++ L G + + D+R R ++ ++ +
Sbjct: 93 AGKIKAAGLKEGDARIVVEAVSDDFRGR------TDSASANVKVVLAPPRVTPDD----- 141
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
+ Y N L ++ P + + A ++ R G P + Y D
Sbjct: 142 --AQHYINQGGMELAVMTPGGSWNEAGVKVGKYSFRS-FALPGHPEQRFAMFAYPWDLPD 198
Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
+V + + + + + R++ A + L Q+ +P +P
Sbjct: 199 NVTP--MVFARNAAGTEATAQFWFKLFPKKFRVRDFP-IDDALISKLVNQI-DPGGTLAP 254
>gi|146338603|ref|YP_001203651.1| amidase [Bradyrhizobium sp. ORS278]
gi|146191409|emb|CAL75414.1| amidase [Bradyrhizobium sp. ORS278]
Length = 501
Score = 41.5 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL-LIPSPTVSSAS- 130
PI + + + ++AG + + + A+ L + ++P ++ +
Sbjct: 232 PITRTVADNALMLEVMAGPDGLDPRQRGAAAQPYTQALSQGAAGLRIGIVPEGFGTAGAE 291
Query: 131 --IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
+ V++ + + G + +S A I L
Sbjct: 292 SEVDDRVREAAGRLQAKGADIREVSV-PLHAAGAAIWTPIFL 332
>gi|162147492|ref|YP_001601953.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5]
gi|161786069|emb|CAP55651.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 500
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 198 NWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
+W G Q+N+ AQV P DL R + DA + ++QR+R
Sbjct: 9 HWRPLG-TNQSNIEAQVERPQDLVHGRPLGDADAHEAAVAVQRWR 52
>gi|167836688|ref|ZP_02463571.1| putative lipoprotein [Burkholderia thailandensis MSMB43]
Length = 130
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 146 GIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCA 205
G+P +S+ YD G V + +A R +GCA
Sbjct: 30 GMPDASVIG--YDPRDGRAVPP------------DCTTLEQPSHMVDAGFGRPGVQFGCA 75
Query: 206 YQNNLAAQVVNPLDLFSPRM 225
+NLA + P DL +P+
Sbjct: 76 TYSNLAVMLARPADLIAPQP 95
>gi|258652061|ref|YP_003201217.1| hypothetical protein Namu_1838 [Nakamurella multipartita DSM 44233]
gi|258555286|gb|ACV78228.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233]
Length = 893
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 72 YP--ILMRKVEQIVDIPLLAGRGEIKYPIHD-----------TIRGFLEKYKNDSASVLF 118
+P I + E VD + + + L Y+ + L
Sbjct: 742 HPFSIRIGDQEASVDYEPAESTTNLFGGNSNWRGPIWMPLNVLLVEALRDYERLTPGALT 801
Query: 119 LLIPSPTVSSASIRRAVKDIRKIIIS---SGIPVSSISERIYD--ADYGM 163
+ P+ + S+A++ +A DI + ++S G YD A
Sbjct: 802 VEYPTGSGSTATVGQAADDIARRLVSIFLPGPDGRRPVHGWYDLLATDPR 851
>gi|239928195|ref|ZP_04685148.1| cyclase [Streptomyces ghanaensis ATCC 14672]
gi|291436525|ref|ZP_06575915.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC
14672]
gi|291339420|gb|EFE66376.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC
14672]
Length = 729
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 39/159 (24%)
Query: 46 QLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQI--VDIPLLAGRGEIKYPIHDTIR 103
+ L F+G S D +D + + E ++P +A + +
Sbjct: 246 GVLVLETFFGCSTQEAADTVNDVLTSR---LHQFEHTAFTEVPAVALEKGLTPDQVAAVA 302
Query: 104 GFL---EKYKNDSA-----------------SVLFLLIPSPTVSSASIRRAVKDIRKIII 143
+ + +++ + +++ D+R ++
Sbjct: 303 AYAKGLQDWQSGGHEWHLRSSRYMNQGARTTGPWAAPVGPGGPGTSAA-----DVRALLA 357
Query: 144 SSGIPV---------SSISERIYDADYGMDVDTIRLSYF 173
+ G P + + Y + IR+ +
Sbjct: 358 APGAPGAPSAPWRRTRAHTHVPYQKVGPSLIPDIRMPFP 396
>gi|172041474|ref|YP_001801188.1| putative DNA restriction-modification system, restriction enzyme
[Corynebacterium urealyticum DSM 7109]
gi|171852778|emb|CAQ05754.1| putative DNA restriction-modification system, restriction enzyme
[Corynebacterium urealyticum DSM 7109]
Length = 876
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
Q++++ G+ + + F+E + + ++ P TV + +++ +
Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGAPR 100
Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
I S +P ++ + Y A L++ P
Sbjct: 101 YITGSAVPPEVVTPQDYSAWVARQNGAAELAFGREVPV 138
>gi|171320619|ref|ZP_02909639.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
gi|171094132|gb|EDT39219.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
Length = 126
Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 170 LSYFASKPSAGKCGFW--PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
+ + + +C P ++ G R +GCA NLA + P DL +P
Sbjct: 33 IGFDGVRAVPPECATLMQPSHLVDAGFG-RPGVPFGCATYTNLATMLARPEDLVAP 87
>gi|120603344|ref|YP_967744.1| hypothetical protein Dvul_2301 [Desulfovibrio vulgaris DP4]
gi|120563573|gb|ABM29317.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
Length = 256
Score = 39.6 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 94 IKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ +RGF E + + L + SP ++ V DI +SG + +
Sbjct: 19 LVMTRRPLLRGFSGESFISTGRPPLVV---SPASGLHAVGGGVTDI-SPATASGTASARV 74
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG 195
+Y T AG WP D+ +
Sbjct: 75 WYALYAPSDNGQPTTDGRRLSVILAEAGDQWQWPHDVSSGLRE 117
>gi|209515952|ref|ZP_03264813.1| conserved hypothetical protein [Burkholderia sp. H160]
gi|209503610|gb|EEA03605.1| conserved hypothetical protein [Burkholderia sp. H160]
Length = 124
Score = 39.6 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 202 YGCAYQNNLAAQVVNPLDLFSPRM------VTPPDAEQR 234
+GCA NLA + P DL +P T A +R
Sbjct: 66 FGCATLTNLAVMLARPEDLIAPLPYAGSDVTTAAGAVRR 104
>gi|38234464|ref|NP_940231.1| hypothetical protein DIP1894 [Corynebacterium diphtheriae NCTC
13129]
gi|38200727|emb|CAE50428.1| Hypothetical protein DIP1894 [Corynebacterium diphtheriae]
Length = 865
Score = 39.2 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
Q++++ G+ + + F+E + + ++ P TV + +++ +
Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGSPR 100
Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSY 172
I S +P ++ + Y A +LS+
Sbjct: 101 YITGSVVPPEVVTPQDYSAWVARQNGAAQLSF 132
>gi|115358172|ref|YP_775310.1| hypothetical protein Bamb_3422 [Burkholderia ambifaria AMMD]
gi|115283460|gb|ABI88976.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
Length = 127
Score = 39.2 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
+ + + C L +A R +GCA NLA + P DL +P
Sbjct: 33 IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATMLARPEDLVAP 87
>gi|170703888|ref|ZP_02894571.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
gi|172062960|ref|YP_001810611.1| hypothetical protein BamMC406_3929 [Burkholderia ambifaria MC40-6]
gi|170131203|gb|EDS99847.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
gi|171995477|gb|ACB66395.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
Length = 127
Score = 38.8 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
+ + + C L +A R +GCA NLA + P DL +P
Sbjct: 33 IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATMLARPEDLVAP 87
>gi|116250165|ref|YP_766003.1| acyltransferase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254813|emb|CAK05887.1| putative acyltransferase [Rhizobium leguminosarum bv. viciae 3841]
Length = 265
Score = 38.8 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
+ ++ + I G + + +L P T S + R ++ + +
Sbjct: 112 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGTTSDGN--RLLEVKSSLFGA 163
Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
+ + V Y + V + ++Y A WP D+
Sbjct: 164 AAMAV------PYSPTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 207
>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 219
Score = 38.8 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 165 VDTIRLSYFASKPSAGKCGFWPED------MLGNAKGNRNWTNYGCAYQNNLAAQVVNPL 218
TI Y A + G +WP D + N NW N A NL A
Sbjct: 4 AATITGMYHAMLATLGPSRWWPGDTPFEIAVGAILTQNTNWRNVEKAI-ANLKA-----R 57
Query: 219 DLFSPRMVTPPDAE 232
DL S R + D
Sbjct: 58 DLLSARAMHALDTG 71
>gi|84514322|ref|ZP_01001686.1| histidyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
gi|84511373|gb|EAQ07826.1| histidyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
Length = 492
Score = 38.8 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 93 EIKYPIHDTIRGFLEKYKNDSASVL--FLLIPSPTVSSASIRRAVKDIRKIIISSGIPVS 150
+ D + GF+E ++ A+ + + + + + + +I ++ + G
Sbjct: 233 GLSQAQADVVIGFMEAKRDTGAATVARLAELVAGSPIGVAGVAELDEIAGLLSAQGYGPD 292
Query: 151 SISERI 156
I
Sbjct: 293 RIVIDP 298
>gi|46579073|ref|YP_009881.1| hypothetical protein DVU0659 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448486|gb|AAS95140.1| hypothetical protein DVU_0659 [Desulfovibrio vulgaris str.
Hildenborough]
gi|311232918|gb|ADP85772.1| hypothetical protein Deval_0604 [Desulfovibrio vulgaris RCH1]
Length = 256
Score = 38.8 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 94 IKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
+ +RGF E + + L + SP ++ V DI +SG + +
Sbjct: 19 LVMTRRPLLRGFSGESFISTGRPPLVV---SPASGLHAVGGGVTDI-SPATASGTASARV 74
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG 195
+Y T AG WP D+
Sbjct: 75 WYALYAPSGNGQPTTDGRRLSVILAEAGDQWQWPHDVSSGLHE 117
>gi|157373221|ref|YP_001471821.1| hypothetical protein Ssed_0080 [Shewanella sediminis HAW-EB3]
gi|157315595|gb|ABV34693.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 304
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT-------VSSASIRR 133
+ VDI +G ++ + + Y A+V +L+ + + +
Sbjct: 177 RRVDIQFESGTSKLTAAHEVDLEAIAQ-YVQADATVKEILVDAHADASGEHLANLVLSKE 235
Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYG 162
++ + GI I R + A
Sbjct: 236 RADEVASRLFELGIQKQKIQVRHHGARSP 264
>gi|320165665|gb|EFW42564.1| tRNA dihydrouridine synthase Dus2 [Capsaspora owczarzaki ATCC
30864]
Length = 503
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 55 GTSALAYYDEGSDYRDR---YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKN 111
G SALA + + R R +P +++ + + IP++A G + HD I F ++
Sbjct: 153 GVSALAVHCRLTHERPREPGHPDMLKPIVDALSIPVIANGGSLDIVSHDDIEAFRQR--- 209
Query: 112 DSASVLFLLIPSPTVSSASIRRAVK-----DIRKIIISSGIPVSS 151
+++ ++ S+ R ++ + ++ +GI +
Sbjct: 210 --TGCASVMVARAAQNNPSVFRPEPLVPRLEMARQLLRTGIEWDN 252
>gi|299134224|ref|ZP_07027417.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
gi|298590971|gb|EFI51173.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
Length = 598
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 66 SDY--RDRYPIL---MRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
+DY RDR+PI+ + Q VD + + E+++ +R + + L
Sbjct: 275 ADYLPRDRHPIVALFVTLDPQEVDANVHPAKTEVRFRNAGLVRALIVHALKEG---LARE 331
Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIY--DADYGMDVDTIRLSYFASKPS 178
++ R+ + SG S + A + + ++ A PS
Sbjct: 332 GRRTAANTNGAAITTAFHREDLPRSGYDWRSSPAAPFAPRASAMAFAEAPQAAFDAYTPS 391
Query: 179 AGKCG 183
A G
Sbjct: 392 ADARG 396
>gi|315505262|ref|YP_004084149.1| beta-ketoacyl synthase [Micromonospora sp. L5]
gi|315411881|gb|ADU09998.1| Beta-ketoacyl synthase [Micromonospora sp. L5]
Length = 6765
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 86 PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR----RAVKDIRKI 141
P+ G G + +TI F + + + ++ ++A A++++R++
Sbjct: 6186 PVAVGIGRLDP---ETIEAFAAELTRRAPGSVSFVVVEAASNAAGGVPVEPAALRELRRV 6242
Query: 142 IISSGIP----VSSISERIYDADYGMD 164
+ G+P S + +
Sbjct: 6243 TAAHGVPLVLDASRVVDNAVQLAGPGG 6269
>gi|254409849|ref|ZP_05023630.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
gi|196183846|gb|EDX78829.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
Length = 325
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR---AVKDIRKIIISSGIPVSSISERI 156
D I + Y+ + L ++ P + + DIR +++ G+P S I
Sbjct: 157 DRILYAAQLYRQSGNNPLVVVSAGPRPNLQGNQDQIVEANDIRSLLVQFGVPQSRIVLEP 216
>gi|91789977|ref|YP_550929.1| UvrA family protein [Polaromonas sp. JS666]
gi|91699202|gb|ABE46031.1| UvrA family protein [Polaromonas sp. JS666]
Length = 2024
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 14/108 (12%)
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP----SPTVSSASIRRA 134
E V++P+ + +R L V+ +L P + + + +
Sbjct: 1258 KEHTVELPVA--DIHVTPENEAALRVALATALEHGKGVVHVLAPLDGLRGAMMAGASTKG 1315
Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182
+ + P + Y SY + C
Sbjct: 1316 LGRLEAFSTKRACP---VCSTSYPELDPRLF-----SYNSKHGWCPDC 1355
>gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
Length = 632
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 96 YPIHDTIRGFLEKYK---NDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
GF ++ + A +L +L+P ++ S A + + G+P
Sbjct: 96 GRKRAGKGGFSLTWRDLEREGAGLLLILLPDAPDATLSAALARMEAHAR--TGGLPGYVA 153
Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGK 181
R Y + R++ A
Sbjct: 154 LVRRYRPGDAARLA--RIADMAMTAGLRP 180
>gi|326319020|ref|YP_004236692.1| excinuclease ABC subunit A [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323375856|gb|ADX48125.1| excinuclease ABC, A subunit [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 1953
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP-SPTVSSASIRRAVKD 137
E +++P+ + + +R L + V+ +L + + + ++
Sbjct: 1207 KEHTIELPVASLD--VAPAQESELRAALARALELGKGVVHVLSGLAGLKDAMAAGQSTAR 1264
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182
I + S + Y SY + C
Sbjct: 1265 IGTLQAFSTKRACPVCATSYAELDPRLF-----SYNSKHGWCPDC 1304
>gi|114327747|ref|YP_744904.1| hypothetical protein GbCGDNIH1_1083 [Granulibacter bethesdensis
CGDNIH1]
gi|114315921|gb|ABI61981.1| hypothetical secreted protein [Granulibacter bethesdensis CGDNIH1]
Length = 275
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLI--PSPTVSSASIRRAVKD- 137
+ + + GR +I +D +R + S + +L P ++ RR
Sbjct: 148 EGLRVMFGPGRSDISPATNDALREAAREVSKLSNESVTILAYAPGTADDPSTARRLSLSR 207
Query: 138 ---IRKIIISSGIPVSSISERIYDADYGMDVD 166
IR +I++G+P + I R ++ G
Sbjct: 208 ALTIRSALIAAGMPSTKIFVRALGSNIGKGPA 239
>gi|37521513|ref|NP_924890.1| polyketide synthase [Gloeobacter violaceus PCC 7421]
gi|35212510|dbj|BAC89885.1| gll1944 [Gloeobacter violaceus PCC 7421]
Length = 619
Score = 37.3 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 97 PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
PI IRG + S + ++A+ IR+ + +G+ S +S
Sbjct: 264 PIRAIIRGTAVNHNGRSNGLT-------APNTAAQEEV---IRRALAQAGVQPSQVSYVE 313
Query: 157 YDADYGMDVDTIRLSYFASKPSAGKCGFW-PEDMLGNAKGNRNW 199
A D I + A K G+ P +LG+ K N
Sbjct: 314 THATGTALGDLI--EFKALKAVLGQRQQGDPRCLLGSLKTNIGH 355
>gi|58616590|ref|YP_195721.1| FO synthase [Azoarcus sp. EbN1]
gi|56316054|emb|CAI10697.1| hypothetical protein, similar to
ThiH,4-methyl-5(beta-hydroxyethyl)thiazole phosphate
synthesis [Aromatoleum aromaticum EbN1]
Length = 806
Score = 36.9 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 15/112 (13%)
Query: 106 LEKYKNDSA---SVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
Y D A + P+P + + R IR+ + G+ I ++ A
Sbjct: 377 ACGYARDDAWAPGTTAAVPPTPAANLPADARIESIIRRAMDGQGLDEDEI-VTLFHARD- 434
Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGN--AKGNRNWTNYGCAYQNNLAA 212
+ + +A + W + N N+TN C+Y+ A
Sbjct: 435 -------VDFQRVCSAADELRQWVNGDIVTYAVNRNINYTNI-CSYKCGFCA 478
>gi|145558866|sp|Q9BZQ2|SHP1L_HUMAN RecName: Full=SHC SH2 domain-binding protein 1-like protein
Length = 725
Score = 36.9 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 86 PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL-----IP--SPTVSSASIRRAVKD 137
P+ +GRG K+P + G L +++ S + + P S++++
Sbjct: 49 PIGQSGRGREKWPTAASALGLLRRWRRASKASVPADSFRTISPDRRGEKSASAVSGDTA- 107
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183
+ + IPV S+ +T RL A G
Sbjct: 108 AATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154
>gi|221134123|ref|ZP_03560428.1| 2-deoxy-D-gluconate 3-dehydrogenase [Glaciecola sp. HTCC2999]
Length = 257
Score = 36.9 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
+ +P+ S + + K + SSGI V++I+ ++ D ++ + Y +
Sbjct: 157 ITVPAYAASKGGVAQITKALANEWASSGIQVNAIAPGYFETDNTTNIRNDKDRYESITAR 216
Query: 179 AGKCGFW--PEDMLGNA 193
CG W PED+ G
Sbjct: 217 IP-CGEWGKPEDLAGAT 232
>gi|12620205|gb|AAG60617.1|AF288398_1 C1orf14 [Homo sapiens]
Length = 725
Score = 36.9 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 86 PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL-----IP--SPTVSSASIRRAVKD 137
P+ +GRG K+P + G L +++ S + + P S++++
Sbjct: 49 PIGQSGRGREKWPTAASALGLLRRWRRASKASVPADSFRTISPDRRGEKSASAVSGDTA- 107
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183
+ + IPV S+ +T RL A G
Sbjct: 108 AATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154
>gi|218682220|ref|ZP_03529821.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase
(phospholipid/glycerol acyltransferase) protein
[Rhizobium etli CIAT 894]
Length = 265
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
+ ++ + I G + + +L P T S + R ++ + +
Sbjct: 112 VFVVREEKRRTGHQANEIAG------RMADGEIVVLFPEGTTSDGN--RLLEVKSSLFGA 163
Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
+ + V Y + V + ++Y A WP D+
Sbjct: 164 AAMAV------PYSPTGTVVVQPLAIAYTRVHGIAMGRYHRPLAAWPGDI 207
>gi|153003035|ref|YP_001377360.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter
sp. Fw109-5]
gi|152026608|gb|ABS24376.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter
sp. Fw109-5]
Length = 599
Score = 36.5 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 99 HDTIRGFLEKYKNDSASVLFLLIP--SPTVSSASIRRAVKDIRKIIISSGIPVSS 151
+R L + L ++ P S + +R + ++R+ + G PV
Sbjct: 382 RAQLRALL---RASVHGNLRIMFPMISGVSELRAAKRLLAEVREELRREGAPVRE 433
>gi|50954943|ref|YP_062231.1| NAD synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|71648719|sp|Q6AER9|NADE_LEIXX RecName: Full=NH(3)-dependent NAD(+) synthetase
gi|50951425|gb|AAT89126.1| NH3-dependent NAD+ synthetase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 279
Score = 36.5 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER-IYDADYG 162
FL +Y + + F+L S S+ R + + + G+ I+ R Y
Sbjct: 29 DFLVRYVRAAGASGFVLGVSGGQDSSLAGRLCQLAVERLAEQGVAAEFIAVRLPYAVQND 88
Query: 163 MDVDTIRLSYFA 174
D + LS+
Sbjct: 89 EDDAQLALSFIR 100
>gi|320529880|ref|ZP_08030957.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis
F0399]
gi|320137898|gb|EFW29803.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis
F0399]
Length = 549
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
++R + + +D PL + + L A VL L P+ +++ R
Sbjct: 458 VIRALPRGLDEPLGENAARLSGGQRSRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 515
Query: 135 VKDIRKIIISSG 146
++ I + + G
Sbjct: 516 IRAILTELSAEG 527
>gi|302818540|ref|XP_002990943.1| hypothetical protein SELMODRAFT_448213 [Selaginella moellendorffii]
gi|300141274|gb|EFJ07987.1| hypothetical protein SELMODRAFT_448213 [Selaginella moellendorffii]
Length = 230
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 34 WKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVD 84
W F L+ L + ++ G + Y +DYR R P + V++I+D
Sbjct: 129 WLGFILQYLWAIGIVVAVITCGILFVTYKPREADYRFREPPSLEDVKKILD 179
>gi|317133493|ref|YP_004092807.1| transcriptional regulator, LysR family [Ethanoligenens harbinense
YUAN-3]
gi|315471472|gb|ADU28076.1| transcriptional regulator, LysR family [Ethanoligenens harbinense
YUAN-3]
Length = 291
Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT---VSSASI 131
+ K + + + I + ++ L P+ + +
Sbjct: 17 TVTKAAHAL----GYVQSNVTAHIRALEKEVGTPLFQRQHGMV--LTPAGEKLLPYAEQV 70
Query: 132 RRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
R + + R ++ G P ++ Y +D+ I Y
Sbjct: 71 LRMLDEARYVLQDDGKPQGRLAIGTYHPVSAVDLPQIFARYHR 113
>gi|220917838|ref|YP_002493142.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955692|gb|ACL66076.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 761
Score = 36.5 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
AGR ++ + G + A L + ++A R + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209
Query: 148 PVSSISERIYDADY 161
PVS+++
Sbjct: 210 PVSAVAVGRSAPRD 223
>gi|110679881|ref|YP_682888.1| acyltransferase [Roseobacter denitrificans OCh 114]
gi|109455997|gb|ABG32202.1| acyltransferase [Roseobacter denitrificans OCh 114]
Length = 273
Score = 36.5 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 33/122 (27%), Gaps = 15/122 (12%)
Query: 83 VDIPLLAGRGEIKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSAS---IRRAVKDI 138
+DI +L + + + + + +F+ + + +R
Sbjct: 101 LDIFVLNATTRAYFVSKAEVAAWPGIGWLARATGTVFIERSRAKAAQQALVFAQRLGAGH 160
Query: 139 RKIIISSGIPVSSISERIYDADYGMDV-----------DTIRLSYFASKPSAGKCGFWPE 187
R + G + + + + L Y A + + + W
Sbjct: 161 RLLFFPEGTSSDGLRVLPFKSSLFAAFFVPELHHVIQVQPVSLRYTAPEGADPRFYGWWG 220
Query: 188 DM 189
DM
Sbjct: 221 DM 222
>gi|313680394|ref|YP_004058133.1| carbohydrate kinase, yjef related protein [Oceanithermus profundus
DSM 14977]
gi|313153109|gb|ADR36960.1| carbohydrate kinase, YjeF related protein [Oceanithermus profundus
DSM 14977]
Length = 486
Score = 36.5 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 76 MRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAV 135
+R+ + +VD G + P+ E+ V+ + +PS + +R +
Sbjct: 108 LREADVVVDALFGTG---LTRPLEGAWAELAERINAADRPVVAVDVPSGLPYAPHVRADL 164
Query: 136 KDIRKIIISSGIPVSSISERIYDADYGMDVDTI 168
+ +G+ + A + + I
Sbjct: 165 -----TVALAGLKPDHVFYPGRSACGRIQLAPI 192
>gi|86157647|ref|YP_464432.1| hypothetical protein Adeh_1221 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774158|gb|ABC80995.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 761
Score = 36.5 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
AGR ++ + G + A L + ++A R + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209
Query: 148 PVSSISERIYDADY 161
PVS+++
Sbjct: 210 PVSAVAVGRSAPRD 223
>gi|326776423|ref|ZP_08235688.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|326656756|gb|EGE41602.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 318
Score = 36.5 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 42 LMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDT 101
L+ GT E D R R+P +V + P++AG + T
Sbjct: 202 LLAAMPLGSGYLTGTLKPGQGFEPEDLRARHPRFTAEVMAA-NQPVVAGLRRVAERRGAT 260
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTV------SSASIRRAVKDIRKIIISSGIPVSSISE 154
+ + + +P ++ + R + D R + G+P + S
Sbjct: 261 VAQVALAWVLR-QGPHVVPVPGAKRERWAVENAGAARVVLDD-RDLAEIDGLPAARESW 317
>gi|197123048|ref|YP_002134999.1| hypothetical protein AnaeK_2645 [Anaeromyxobacter sp. K]
gi|196172897|gb|ACG73870.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. K]
Length = 761
Score = 36.5 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
AGR ++ + G + A L + ++A R + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209
Query: 148 PVSSISERIYDADY 161
PVS+++
Sbjct: 210 PVSAVAVGRSAPRD 223
>gi|332820870|ref|XP_001175202.2| PREDICTED: sodium-dependent dopamine transporter [Pan troglodytes]
Length = 641
Score = 36.5 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 71 RYPILMRKVEQIVDIPLLAGRG-----EIKYPI--HDTIRGFLEKYKNDSASVLFLLIP- 122
R+P L+R+ E+ + G + H +RG + + ++S+L +P
Sbjct: 509 RHP-LLRRGER---LGTGPFDGISEVLSLDGSQKTHTVVRGVHSGWASSASSMLEAPVPS 564
Query: 123 SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
SP++ + + ++ D ++ + G + Y A
Sbjct: 565 SPSLLTRAPEQSGPDDQRAALERGAAPGPFASSAYLASS 603
>gi|302802177|ref|XP_002982844.1| hypothetical protein SELMODRAFT_445280 [Selaginella moellendorffii]
gi|300149434|gb|EFJ16089.1| hypothetical protein SELMODRAFT_445280 [Selaginella moellendorffii]
Length = 171
Score = 36.5 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 34 WKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVD 84
W F L+ L + ++ G + Y +DYR R P + V++I+D
Sbjct: 70 WLGFILQYLWAIGIVVAVITCGILFVTYKPREADYRFREPPSLEDVKKILD 120
>gi|317507714|ref|ZP_07965419.1| carbohydrate kinase [Segniliparus rugosus ATCC BAA-974]
gi|316253967|gb|EFV13332.1| carbohydrate kinase [Segniliparus rugosus ATCC BAA-974]
Length = 512
Score = 36.1 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 17/147 (11%)
Query: 34 WKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGE 93
++ F R + ++ L + +G + ++ + + V + + G
Sbjct: 368 FEAFAGRPVGADRVAAALELAVECHVTVLLKG------HVTIIAEPSRRVLVNIAQGSWA 421
Query: 94 IKYPIHDTIRGFLE-----------KYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142
D + G + ++ + + + P+ + +A + A+ +
Sbjct: 422 ATAGSGDVLSGMIGALLATGAPGPCSVRSAGSGHVVIRAPATSDYAAPLAAAIHSRAADL 481
Query: 143 ISSGIPVSSISERIYDADYGMDVDTIR 169
+ G + I+ A + +R
Sbjct: 482 AAGGERGAPITASRLAAHIPEAIRAVR 508
>gi|313895426|ref|ZP_07828983.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312976321|gb|EFR41779.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 548
Score = 36.1 bits (82), Expect = 3.8, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
++R + + +D PL + + + L A VL L P+ +++ R
Sbjct: 457 VVRALPRGLDEPLGENAARLSGGQRNRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 514
Query: 135 VKDIRKIIISSG 146
++ I + + G
Sbjct: 515 IRAILTALSAEG 526
>gi|222081029|ref|YP_002540392.1| 4-hydroxy-2-oxovalerate aldolase protein [Agrobacterium radiobacter
K84]
gi|263430668|sp|B9JML6|HOA_AGRRK RecName: Full=4-hydroxy-2-oxovalerate aldolase; Short=HOA; AltName:
Full=4-hydroxy-2-keto-pentanoic acid aldolase; AltName:
Full=4-hydroxy-2-oxopentanoate aldolase
gi|221725708|gb|ACM28797.1| 4-hydroxy-2-oxovalerate aldolase protein [Agrobacterium radiobacter
K84]
Length = 338
Score = 36.1 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 24/190 (12%)
Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYK---NDSAS 115
+A + +D ++ + + +D+ + G + ++ G ++ + A
Sbjct: 107 VATHCTEADVAKQH----IEAARALDLDVA---GFLMMAHMNSPEGLAKQAQMMEAYGAH 159
Query: 116 VLFLLIPSPTVSSASIRRAVKDIRKII---ISSGIPVSS---ISERIYDADYGMDVDTIR 169
+++ + ++ +R V+ +R+ + GI V + +
Sbjct: 160 CVYVTDSAGALTMDGVRERVRALRQALKPETQVGIHVHHNLSLGVANAVVGVEEGAYRVD 219
Query: 170 LSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPP 229
S AG P ++ W +GC NL A + DL P P
Sbjct: 220 ASLAGMGAGAGNT---PIEVFAAVADRLGWQ-HGC----NLFALMDAADDLVRPLQDRPV 271
Query: 230 DAEQRDKSIQ 239
++ SI
Sbjct: 272 RVDRETLSIG 281
>gi|56461549|ref|YP_156830.1| acetyltransferase domain-containing protein [Idiomarina loihiensis
L2TR]
gi|56180559|gb|AAV83281.1| Acetyltransferase, GNAT family fused to PaaI related
uncharacterized conserved domain [Idiomarina loihiensis
L2TR]
Length = 300
Score = 36.1 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 62 YDEGSDYRD--RYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR--GFLEKYKNDSASVL 117
E +Y + +++ + E+ P+ GR P IR +Y+ + V
Sbjct: 33 GSEQDEYDQVGHHRMVVNEAEE----PVAVGRLHFNSPEEAQIRFMAVAPEYRGEGHGVA 88
Query: 118 FL 119
+
Sbjct: 89 II 90
>gi|227502928|ref|ZP_03932977.1| siderophore-interacting protein [Corynebacterium accolens ATCC
49725]
gi|227076350|gb|EEI14313.1| siderophore-interacting protein [Corynebacterium accolens ATCC
49725]
Length = 622
Score = 36.1 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 79 VEQIVDIPLLAGRGEIKYPI--------HDTIRGFLEKYKNDSASVLFLLIPSPTVSSAS 130
+V++P A ++ P D F+EK + +P + +
Sbjct: 182 AVAVVEVPTSADIQDLDIPDSVQIHWAVRDQGEDFVEKSRALFEGTSQSALPGGEAYAWA 241
Query: 131 IRRAVKD--IRKIIISSGIPVSSISERIY 157
A + +R++ +SGI Y
Sbjct: 242 AGEASRLKPLRRLFKASGISPEHREITGY 270
>gi|87311447|ref|ZP_01093567.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645]
gi|87285859|gb|EAQ77773.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645]
Length = 284
Score = 36.1 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 16/95 (16%)
Query: 83 VDIPLLAGRGEIKYPIHDT----------IRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
V + G G + + F+ +Y++ + +
Sbjct: 47 VVVLPGGGYGHLATGHEGVDIAKWYNSFGVSAFVVEYRHRGRGY------AHPAPIQDAQ 100
Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDT 167
RA++ +R G+ I + A +
Sbjct: 101 RAIRTVRARAEEFGVSPDKIGVMGFSAGGHLASTA 135
>gi|313837570|gb|EFS75284.1| conserved domain protein [Propionibacterium acnes HL037PA2]
gi|314927551|gb|EFS91382.1| conserved domain protein [Propionibacterium acnes HL044PA1]
gi|314972509|gb|EFT16606.1| conserved domain protein [Propionibacterium acnes HL037PA3]
Length = 320
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
Q++++ G+ + + F+E + + ++ P TV + +++ +
Sbjct: 2 QVLNLATGVGKTYL-------MAAFIEYLRRQGVGNVVIVTPGKTVQAKTVQNFALGEPR 54
Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
I S +P ++ + Y A LS KP
Sbjct: 55 YIAGSSVPPEVVTPQDYSAWIARQNGAEILSSGREKPV 92
>gi|310821456|ref|YP_003953814.1| beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1]
gi|309394528|gb|ADO71987.1| Beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1]
Length = 1526
Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 97 PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
D+I + ++ + +P+ + + I + + +G+P SI
Sbjct: 263 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 317
Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGNRNW 199
+ D + +S + A G CG LG+ K N
Sbjct: 318 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSNIGH 359
>gi|115379305|ref|ZP_01466416.1| oxidoreductase, short chain dehydrogenase/reductase family
[Stigmatella aurantiaca DW4/3-1]
gi|115363687|gb|EAU62811.1| oxidoreductase, short chain dehydrogenase/reductase family
[Stigmatella aurantiaca DW4/3-1]
Length = 1519
Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 16/108 (14%)
Query: 97 PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
D+I + ++ + +P+ + + I + + +G+P SI
Sbjct: 256 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 310
Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGNRNW 199
+ D + +S + A G CG LG+ K N
Sbjct: 311 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSNIGH 352
>gi|124263034|ref|YP_001023504.1| malate dehydrogenase (NAD) [Methylibium petroleiphilum PM1]
gi|124262280|gb|ABM97269.1| malate dehydrogenase (NAD) [Methylibium petroleiphilum PM1]
Length = 432
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 40 RTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLA---GRGEIKY 96
R L + + F L + R + + + IPL G I+
Sbjct: 261 RVLGMAGVLDSARFCALVGLTGKARPQEVRA---VALGSHGPEMVIPLSQAFVGDRPIES 317
Query: 97 P-IHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG--IPVSSIS 153
+T++ +E+ + + L+ + + AV +R ++ SG I S
Sbjct: 318 MFDAETLKALVERARESG-GEVVKLLQKGSAYFSPAESAVTMVRAMVRDSGEVIAACVRS 376
Query: 154 ERIYDADYGMDVDTIRL 170
Y A +RL
Sbjct: 377 RGAYGAVDTRVGLPVRL 393
>gi|108763538|ref|YP_629555.1| putative lipoprotein [Myxococcus xanthus DK 1622]
gi|108467418|gb|ABF92603.1| putative lipoprotein [Myxococcus xanthus DK 1622]
Length = 160
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
+ GF ++ D VL L + +S + A D + ++
Sbjct: 37 RVVGFQVDFRQDGTGVLDLDLAVTNPASDAATLAAVDFTLR-----VDGRRVAVGTQQVA 91
Query: 161 YGMDV---DTIRLSYFASKPSAG 180
+ +R+ + + A
Sbjct: 92 APLAADGSAPLRVLFPLASARAT 114
>gi|124268530|ref|YP_001022534.1| UvrA family protein [Methylibium petroleiphilum PM1]
gi|124261305|gb|ABM96299.1| UvrA family protein [Methylibium petroleiphilum PM1]
Length = 1929
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP-SPTVSSASIRRAVKD 137
E +++P+ G + +R L K V+ LL P ++ +
Sbjct: 1227 KEHTLELPV--GDIVVTPDNEAELRALLAKTLELGKGVVHLLGPLDGLKAAMAAGAPTHR 1284
Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182
I ++ + S Y SY + C
Sbjct: 1285 IGRVKVFSTKRACPACGTSYPELDPRMF-----SYNSKHGWCPDC 1324
>gi|299116017|emb|CBN76017.1| inversin protein alternative isoform [Ectocarpus siliculosus]
Length = 748
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 95 KYPIHDTIRGFLE---KYKNDSASVLFLLIPSPTVSSASI--------RRAVKDIRKIII 143
I D G +Y+ S + + S ++ + R + ++R+++
Sbjct: 560 TTTIEDRTAGSSAVDTRYRRSSTPQVVSQVVSGGATTKAWGPLHMAIHRGSSSEVRELLT 619
Query: 144 SSGIPVSSISERIYDA 159
G+ + ER +
Sbjct: 620 RPGVDKEELLERSFSP 635
>gi|89897655|ref|YP_521142.1| hypothetical protein DSY4909 [Desulfitobacterium hafniense Y51]
gi|219670784|ref|YP_002461219.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
[Desulfitobacterium hafniense DCB-2]
gi|89337103|dbj|BAE86698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541044|gb|ACL22783.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
[Desulfitobacterium hafniense DCB-2]
Length = 416
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
PI + ++D+ + + I F + + + L++ P T S +
Sbjct: 38 PIRIDDAPHLLDVDV----------MCQVIGAFGASVRREGS-QLYINTPEIT-SLEAPH 85
Query: 133 RAVKDIRKIIISSG-IPVSSISERIYDADY 161
V +R I++ G + + RI
Sbjct: 86 DLVSQMRASIVTMGPVLARTGRVRISHPGG 115
>gi|221633490|ref|YP_002522715.1| valyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
gi|221157072|gb|ACM06199.1| valyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
Length = 892
Score = 35.4 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 29/154 (18%)
Query: 15 CFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYG-----TSALAYYDEGSDYR 69
C + + + L + I ++LR + G L++ +D R
Sbjct: 184 CPRCMTALSDLEVDHEEIEGTLYYLRYPIDGSDESLVVATTRPETMLGDTGVAVHPNDER 243
Query: 70 DRY--------P-------ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSA 114
R+ P I+ ++ VD G ++ F E +
Sbjct: 244 YRHLVGKTAILPLLGRRLTIV---ADEAVDPAFGTGAVKVTPAH--DFTDF-EIAQRHGL 297
Query: 115 SVLFLLIPSPTVSSAS---IRRAVKDIRKIIISS 145
+ +L P T++ + +++ R+ ++
Sbjct: 298 PPVNILNPDGTLNEQAGPFAGLTIQEARRRVVEE 331
>gi|325965245|ref|YP_004243151.1| hypothetical protein Asphe3_39290 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323471332|gb|ADX75017.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans
Sphe3]
Length = 331
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
+ + + + Y+ + LIPS + + + + + GIP +SI
Sbjct: 170 VPPLLAARLDAAVSLYRGKHGGTIRALIPSGGRGADELTTEGAAMARYLQEQGIPAASIL 229
Query: 154 ER 155
Sbjct: 230 IE 231
>gi|75676093|ref|YP_318514.1| hypothetical protein Nwi_1902 [Nitrobacter winogradskyi Nb-255]
gi|74420963|gb|ABA05162.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 499
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 60 AYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL 119
A + +G Y+ + +++ G + + A ++ +
Sbjct: 226 APHIDGHKYKRGHAVVVS--------------GHLTSTGAARLS--ARGALRAGAGLVTV 269
Query: 120 LIPSPTVSSASIRRAVKDIRKIIISSG 146
L P + + + +R++ ++G
Sbjct: 270 LSPDDALGANAAALTAVMVRRMNGAAG 296
>gi|330812292|ref|YP_004356754.1| alginate lyase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380400|gb|AEA71750.1| putative alginate lyase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 221
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 82 IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI 141
++ + G ++GF ++Y + + +F P ++ + ++R+
Sbjct: 6 TWNLSIPEGSPPATIETSQLVQGFQDQYFHSDSGTVFFWAPVTGATTTNAIYPRSELRET 65
Query: 142 IISSGIPVSSISERIYDADYGMDVDTIRLS 171
S+G + + Y A T+ +S
Sbjct: 66 -YSNGTLRNWL----YPAADNKLAATLAVS 90
>gi|163731849|ref|ZP_02139296.1| acyltransferase [Roseobacter litoralis Och 149]
gi|161395303|gb|EDQ19625.1| acyltransferase [Roseobacter litoralis Och 149]
Length = 260
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 83 VDIPLLAGRGEIKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSAS---IRRAVKDI 138
+DI +L + + + + + + +F+ V+ S +R
Sbjct: 88 LDIFVLNATTRLYFVSKSEVAAWPGIGWLARATGTVFIERNRSKVAQQSELFAQRLGAGH 147
Query: 139 RKIIISSGIPVSSISERIYDAD-----------YGMDVDTIRLSYFASKPSAGKCGFWPE 187
R + G + + + + V + L Y A + + + W
Sbjct: 148 RLLFFPEGTSSDGLRVLPFKSSLFAAFFAPDLRGSIQVQPVSLRYTAPEHADPRFYGWWG 207
Query: 188 DM 189
DM
Sbjct: 208 DM 209
>gi|292669583|ref|ZP_06603009.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648792|gb|EFF66764.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 538
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
++R + +D PL + + L A +L L P+ + +A R
Sbjct: 447 VVRALPAGLDEPLGKNASRLSGGQRSRLLTALA--LASGAPILLLDEPTAGLDAARGARL 504
Query: 135 VKDIRKIIISSGI 147
++ + + + G
Sbjct: 505 IERVLAALDARGA 517
>gi|83589123|ref|YP_429132.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
gi|83572037|gb|ABC18589.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
Length = 1232
Score = 35.0 bits (79), Expect = 8.6, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 27/125 (21%)
Query: 54 YGTSALAYYDEGSDYRDRYPILMRKVEQIVDI---PLLAGRGE------IKYPIHDTIRG 104
G + + R R+P + I P+ AG G + +
Sbjct: 491 AGQGGIFAPQVPAGRRTRHP----ETAASAVIRPAPVPAGSGGPGLTGALNPEQQSAVTA 546
Query: 105 FLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD 164
+ + ++ T + + V + +I G+ I+ +
Sbjct: 547 --------ATGPVVVIAGPGTGKTRT---LVYRLAYLIKERGVAPGEIAAVTFT---NKA 592
Query: 165 VDTIR 169
IR
Sbjct: 593 AAEIR 597
>gi|304311070|ref|YP_003810668.1| Putative SanA protein [gamma proteobacterium HdN1]
gi|301796803|emb|CBL45015.1| Putative SanA protein [gamma proteobacterium HdN1]
Length = 247
Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 16/125 (12%)
Query: 38 FLRTLMLGQL---FFLLLFYGTSALAYYDEGSDYRDRYPILMRKVE-QIVDIPLLAG--- 90
R G F ++ + S + + + +V V + L
Sbjct: 16 IFRIARWGSFVAGFVSIVLFLCDFSVSASTQSAIKTQ----IGEVPEHSVVVVLGTSWRL 71
Query: 91 -RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPV 149
G++ + + Y+ A + ++ S ++ + +RK +I+ GIP
Sbjct: 72 PSGKVNPYYKARVDAVDQLYR---AGKVQAVVVSG-DNATPQYNEPRKLRKDLIARGIPA 127
Query: 150 SSISE 154
I+
Sbjct: 128 GMITM 132
>gi|254236387|ref|ZP_04929710.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719]
gi|126168318|gb|EAZ53829.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719]
Length = 297
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 12 GGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDR 71
G V F+ M L L + L L G+L L G AL + ++YR R
Sbjct: 61 GAVVFRRAEEMLRLRRDLLSELDD---LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRR 116
Query: 72 YP-ILM---RKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVS 127
YP I + + ++ +LAG E+ + GF Y+ L +L+P+
Sbjct: 117 YPNIAVHLVEGGSKTMEQAVLAGELELAGSLTPADDGF--DYQPFCNEPLDVLLPAGHPK 174
Query: 128 SASIRRAVKDIR 139
+A+ A+ ++
Sbjct: 175 AAAASVALGELA 186
>gi|300693968|ref|YP_003749941.1| excinuclease ABC, a subunit [Ralstonia solanacearum PSI07]
gi|299076005|emb|CBJ35316.1| Excinuclease ABC, A subunit [Ralstonia solanacearum PSI07]
Length = 1945
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 80 EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
E +++P+ G + +R LE+ V +L P + A +
Sbjct: 1212 EHTLELPV--GDIVVTPENEAALRALLEQALEHGKGVAHVLAPLDGLQHAMQNGGSAQVG 1269
Query: 140 KIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182
+ + S Y SY + C
Sbjct: 1270 SVKVFSTKRACPTCGTSYPELDPRMF-----SYNSKHGWCPGC 1307
>gi|227494172|ref|ZP_03924488.1| MutT/nudix family protein [Actinomyces coleocanis DSM 15436]
gi|226831906|gb|EEH64289.1| MutT/nudix family protein [Actinomyces coleocanis DSM 15436]
Length = 189
Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 71 RYPILMRKVEQIVDIPLLAGR--GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP--TV 126
R+P ++ Q P++ R G + I + + A + +P
Sbjct: 18 RHPAVLSARTQTRQYPVVDERSAGGLVLKIEGGRPLVAVIARRNRAGKIEWCLPKGHIEP 77
Query: 127 SSASIRRAVKDIRK 140
+ ++ AV++I +
Sbjct: 78 NESAQTAAVREIAE 91
>gi|114319729|ref|YP_741412.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226123|gb|ABI55922.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola
ehrlichii MLHE-1]
Length = 492
Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-TVSSASI 131
P + + +VD L G + P+ R L+ K VL + +PS + ++
Sbjct: 115 PTGLADEDVVVDALLGTG---LDRPVEGRYREALQALKAAGVPVLAIDVPSGLNAGTGAV 171
Query: 132 RRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL---SYFASKPSAGKC 182
+ + G+ ++ + D + + Y P AG C
Sbjct: 172 MGEAVEAHCTVTFIGLKPGLLTGAGPQCAGTLYFDDLGVPPEIYQDMAPVAGLC 225
>gi|330818051|ref|YP_004361756.1| NAD dependent epimerase/dehydratase family protein [Burkholderia
gladioli BSR3]
gi|327370444|gb|AEA61800.1| NAD dependent epimerase/dehydratase family protein [Burkholderia
gladioli BSR3]
Length = 353
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 22/105 (20%), Gaps = 10/105 (9%)
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDI 138
Q++ + G I +++ S +
Sbjct: 75 ARQVLLLAPPQPSGPDDRRTRALIAALGARHRARG----------GPARSGAAPVGRMRA 124
Query: 139 RKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
G + +RL Y ++ G CG
Sbjct: 125 LAGAWRRGTDRGQAAPGAARIVPEGPSAPLRLVYASTSGVYGDCG 169
>gi|224824178|ref|ZP_03697286.1| Carboxymethylenebutenolidase [Lutiella nitroferrum 2002]
gi|224603597|gb|EEG09772.1| Carboxymethylenebutenolidase [Lutiella nitroferrum 2002]
Length = 287
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 71 RYPILMRKVEQIVDIPLLAGRGEIKYPIH-DTIRGFLEKYKNDSASVLFLLIP------- 122
R+P+ + + P+L G + I DT++ +K + ++ P
Sbjct: 201 RHPLDLADQ---LKAPVLGLYGGLDSGISLDTVKAMQDKLAKAGSPSRLIVYPDAGHGFN 257
Query: 123 ---SPTVSSASIRRAVKDIRKIIISSGIPV 149
P+ ++A+ + G+
Sbjct: 258 ADYRPSYNAAAAHDGWAKMLAWFADHGVKP 287
>gi|182435799|ref|YP_001823518.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178464315|dbj|BAG18835.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 308
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 42 LMLGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDT 101
L+ GT E D R R+P +V + P++AG + T
Sbjct: 192 LLAAMPLGSGYLTGTLKPGQGFEPEDLRARHPRFTAEVMAA-NQPVVAGLRRVAERRGAT 250
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTV------SSASIRRAVKDIRKIIISSGIPVS 150
+ + + +P ++ + R + D R + G+P +
Sbjct: 251 VAQVALAWVLR-QGPHVVPVPGAKRERWAVENAGAARVVLDD-RDLTEIDGLPAA 303
>gi|153005408|ref|YP_001379733.1| hypothetical protein Anae109_2548 [Anaeromyxobacter sp. Fw109-5]
gi|152028981|gb|ABS26749.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. Fw109-5]
Length = 759
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDI 138
E +P AGR ++ + G + A L + ++A +
Sbjct: 143 AEAARGVPGRAGRTDVLGALEAVASGAGGSTRRL-AGALVVS--DGADNAALAEGLGPEA 199
Query: 139 RKIIISSGIPVSSISERIYDADY 161
R + G+PV++++
Sbjct: 200 RAKARALGVPVNAVAVGRSAPRD 222
>gi|325921222|ref|ZP_08183083.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865]
gi|325548285|gb|EGD19278.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865]
Length = 433
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----S 127
P+L+ +Q DI + G + + I +R +++ + +L ++PS +
Sbjct: 289 PVLVELGQQAPDIAVAVG---LTHDIRADVRTYVDSNLPSAGRILNCMLPSGAGPASVRN 345
Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVD 166
A + + + + +P + + ++ A
Sbjct: 346 RAHAALLAHQLAQAVSETRVPGVARTVHLFMAAPNGFFS 384
>gi|239907226|ref|YP_002953967.1| phosphoribosylformylglycinamidine synthase [Desulfovibrio
magneticus RS-1]
gi|239797092|dbj|BAH76081.1| phosphoribosylformylglycinamidine synthase [Desulfovibrio
magneticus RS-1]
Length = 270
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIR------GFLEKYKNDSASVLFLLIPS--- 123
P + K ++D+P+ G G++ + +Y + + + + P+
Sbjct: 152 PCVFTKGLSVIDLPVRHGEGKLVPMEPAVLDELMASGAVALQYADPATGAVTMDYPANPN 211
Query: 124 PTVSSAS 130
+ + +
Sbjct: 212 GSPQAIA 218
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.139 0.421
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,588,318,938
Number of Sequences: 14124377
Number of extensions: 191500441
Number of successful extensions: 789178
Number of sequences better than 10.0: 478
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 788573
Number of HSP's gapped (non-prelim): 708
length of query: 243
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 108
effective length of database: 2,936,002,735
effective search space: 317088295380
effective search space used: 317088295380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 79 (35.0 bits)