BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547836|gb|ACT57199.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
           MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA
Sbjct: 1   MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL
Sbjct: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120

Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
           IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG
Sbjct: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180

Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR
Sbjct: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240

Query: 241 YRQ 243
           YRQ
Sbjct: 241 YRQ 243


>gi|86748906|ref|YP_485402.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
 gi|86571934|gb|ABD06491.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2]
          Length = 242

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +++ ++ V + +  GRG +       +  F +++  +    +   +PS T
Sbjct: 44  NDYRQRHPIAIQEADRSVVVFVGNGRGGLTATQRADVAAFGKEWLREGTGSIIAEVPSGT 103

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +    +++I+ ++ S G+P   +  + Y          IRL Y      AG CG W
Sbjct: 104 PNARAASDTMREIQSLLTSGGVPARGVIVKPYQPADPRSFAAIRLLYPKVAAVAGPCGLW 163

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  + K      N+ + N+GCA Q NLAA V NP DL  PR  TP    +R  + + 
Sbjct: 164 PEDIGPSIKNKGYLDNKPYWNFGCANQRNLAAMVENPSDLVQPRPETPAYTARRGVTFET 223

Query: 241 YR 242
           YR
Sbjct: 224 YR 225


>gi|75674498|ref|YP_316919.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
 gi|74419368|gb|ABA03567.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255]
          Length = 246

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI +++ ++ V+I +   RG +  P    + G    +  +    +   +P+ T 
Sbjct: 44  DYRLRHPIAIQEADRTVNIFIGNTRGGLTAPQRADVVGLASVWLREGTGAIVAEVPTGTG 103

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +   + +++R ++ ++G+P   I  R Y         TIRL+Y      AG CG WP
Sbjct: 104 NARAAADSFREVRSLLAAAGVPPRGIIVRHYHPADPRLFATIRLTYPRIAAVAGPCGVWP 163

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  + K      N+ + N+GCA Q NLA+ + NP DL  PR  TP    +R +S ++Y
Sbjct: 164 DDIGPSVKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPAYTARRTQSFEKY 223

Query: 242 RQ 243
           R+
Sbjct: 224 RK 225


>gi|92116012|ref|YP_575741.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
 gi|91798906|gb|ABE61281.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14]
          Length = 246

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +++  + V+I +   RG +       + G    +  +    +    P  T
Sbjct: 43  NDYRLRHPIAIQEANRTVNIFVGNTRGGLSASQRADVVGLASVWLREGTGAIVAEAPMGT 102

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +   +++++R ++ ++G+P   I  R Y         TIRL+Y      AG CG W
Sbjct: 103 SNARAAADSLREVRSLLTAAGVPPRGIIVRHYHPADPRLFATIRLTYPQIAAVAGPCGVW 162

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  + K      N+ + N+GCA Q NLAA V NP DL  PR  TP    +R  ++ +
Sbjct: 163 PEDLGPSIKNKGYLDNKPYWNFGCASQRNLAAMVDNPSDLVQPRPETPTYTARRTYALDK 222

Query: 241 YRQ 243
           YRQ
Sbjct: 223 YRQ 225


>gi|91977986|ref|YP_570645.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
 gi|91684442|gb|ABE40744.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5]
          Length = 243

 Score =  272 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +++ +  V + +  GRG +       +  F + +  +    +   +P+ T
Sbjct: 45  TDYRQRHPIAIQEGDHTVVVFVGNGRGGLTTTQRADVAAFGQGWLREGTGSIIAEVPADT 104

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +    +++I+ ++ + G+P   +  + Y          IRL Y      AG CG W
Sbjct: 105 PNARAAGETLREIQSLLAAGGVPQRGVIVKPYRPTDPRAFAAIRLIYPKVSAVAGPCGLW 164

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  + K      N+ + N+GCAYQ NLAA V NP DL  PR  TPP A +R  + + 
Sbjct: 165 PEDIGPSIKNKGYLDNKPYWNFGCAYQRNLAAMVENPSDLVQPRPETPPYAARRATTFEA 224

Query: 241 YR 242
           YR
Sbjct: 225 YR 226


>gi|90425198|ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
 gi|90107212|gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18]
          Length = 246

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI +++ +Q + I    GRG +       +    + +  +    + + +P+ T 
Sbjct: 44  DYRQRHPIAIQEADQTLIIFAGTGRGGLTGAQRADVASLAQTWLREGTGPIVIDLPTHTP 103

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +   ++++IR ++ + G+P ++++ R Y          IR++Y     +AG CG WP
Sbjct: 104 NARAAADSLREIRALLAAQGLPPNAVTVRDYQPRDTRQFAAIRVNYPRLTATAGPCGLWP 163

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  ++K      N+ + N GCA Q NLAA V NP DL  PR  TP    +R  S ++Y
Sbjct: 164 DDLGSSSKNHDYFENKPYWNLGCASQRNLAAMVDNPADLVQPRGETPAYTARRTNSFEKY 223

Query: 242 RQ 243
           R+
Sbjct: 224 RK 225


>gi|85713506|ref|ZP_01044496.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
 gi|85699410|gb|EAQ37277.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A]
          Length = 245

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 5/183 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +++ ++ V+I +   RG +       + G    +  +    +   +P+ T
Sbjct: 42  NDYRLRHPIAIQEADRTVNIFVGNTRGGLTAAQRADVIGLASVWLREGTGAIIAEVPAET 101

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +   + K++R ++ ++G+P   I  R Y+        TIRL+Y      AG CG W
Sbjct: 102 RNARAAASSFKEVRSLLTAAGVPPRGIIVRHYNPADPRLFATIRLTYPRIAAVAGPCGVW 161

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           P+D+  + K      N+ + N+GCA Q NLA+ + NP DL  PR  TPP   +R +  ++
Sbjct: 162 PDDLGPSIKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPPYTARRTEGFEK 221

Query: 241 YRQ 243
           YR+
Sbjct: 222 YRK 224


>gi|146338122|ref|YP_001203170.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
 gi|146190928|emb|CAL74933.1| Putative pilus assembly protein cpaD; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 246

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI +++    + + +  GRG +       + G  + +       +   +PS T 
Sbjct: 44  DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMGLAQSWMRQGTGAIVADVPSGTP 103

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +   ++++I+ +  ++G+P   ++ R Y       +  IRLSY     +AG CG WP
Sbjct: 104 NARAAADSMREIQSLFSAAGVPPHGVTVRNYQPKDPRQMAAIRLSYPKLSATAGPCGLWP 163

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  + K      N+   N+GCAYQ N+AA V NP DL  PR  TP    +R    ++Y
Sbjct: 164 DDLGPSVKNKNWFDNKPDWNFGCAYQRNMAAMVDNPADLVQPRPETPSYTTRRTALFEKY 223

Query: 242 RQ 243
           R+
Sbjct: 224 RK 225


>gi|299132287|ref|ZP_07025482.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
 gi|298592424|gb|EFI52624.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2]
          Length = 246

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 5/181 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++++  +  +I +   RG +       I G  + + ++    + + +P+ T 
Sbjct: 44  DYRLRHPIVIQEASKTTEIFVGHARGGLTTAQRADIVGLSQAWLSEGTGAITIDVPTGTP 103

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +    V+DI+ I+ ++GIP   I    Y  +       +R+ Y      AG CG WP
Sbjct: 104 NAQAASVTVRDIQNILAAAGIPPKGIRVMPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 163

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           ED+  + K      NR++ N+GCAYQ N+AA V NP DL  PR  TPP++ +R ++  +Y
Sbjct: 164 EDLGPSVKNKSYFENRSYQNFGCAYQRNMAAMVANPADLVQPRAETPPNSARRTEAFAKY 223

Query: 242 R 242
           R
Sbjct: 224 R 224


>gi|39936741|ref|NP_949017.1| pilus assembly protein cpaD [Rhodopseudomonas palustris CGA009]
 gi|192292567|ref|YP_001993172.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
           TIE-1]
 gi|39650597|emb|CAE29120.1| possible pilus assembly protein cpaD [Rhodopseudomonas palustris
           CGA009]
 gi|192286316|gb|ACF02697.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Rhodopseudomonas palustris TIE-1]
          Length = 242

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +R+ ++ V++ +  GRG +       +    + +  +    +   +PS T
Sbjct: 44  TDYRQRHPIAIREADRTVEVFVGNGRGGLTPVQRAEVAELGQTWLREGTGAIIAEVPSDT 103

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +    +++I+ ++ ++G+P   ++ + Y         TIRL Y      AG CG W
Sbjct: 104 PNARAASDTIREIQSVLAANGVPARGVTVKHYRPADPRTFATIRLIYPKVTAVAGPCGLW 163

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  + K      NR + N GCA Q NLAA V NP DL  PR  TPP   +R  +   
Sbjct: 164 PEDLGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPSDLVQPRPETPPYTARRAVTYDT 223

Query: 241 YR 242
           YR
Sbjct: 224 YR 225


>gi|148258236|ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
 gi|146410409|gb|ABQ38915.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
          Length = 244

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI +++    + + +  GRG +       +    + +       +   +P+ T 
Sbjct: 42  DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMALAQSWLRQGTGAISADVPTGTP 101

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +   ++++I+ +  ++G+P   ++ R Y       +  IRLSY     +AG CG WP
Sbjct: 102 NARAAGDSMREIQSLFAAAGVPPHGLTVRNYQPKDPRQMAAIRLSYPKMSATAGPCGVWP 161

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+    K      N+   N+GCAYQ N+AA V NP DL  PR  TP    +R     +Y
Sbjct: 162 DDLGPTIKNKNWFENKPDWNFGCAYQRNMAAMVDNPADLVQPRAETPSYTTRRTALFDKY 221

Query: 242 RQ 243
           R+
Sbjct: 222 RK 223


>gi|209886531|ref|YP_002290388.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
 gi|209874727|gb|ACI94523.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5]
          Length = 247

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 5/181 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++++  +  +I +   RG +       I G  + + ++    + +  P+ T 
Sbjct: 45  DYRARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAITIDTPTGTP 104

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +    V+DI+ +++++GIP   +  + Y  +       +R+ Y      AG CG WP
Sbjct: 105 NAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 164

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           ED+  + K      NR + N+GCAYQ N+AA V NP DL  PR  +P ++ +R ++  +Y
Sbjct: 165 EDLGPSVKNKSYFENRPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRSQAFTKY 224

Query: 242 R 242
           R
Sbjct: 225 R 225


>gi|316933038|ref|YP_004108020.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris DX-1]
 gi|315600752|gb|ADU43287.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Rhodopseudomonas palustris DX-1]
          Length = 242

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +R+ ++ V++ +  GRG +       +    + +  +    +   +PS T
Sbjct: 44  TDYRQRHPIAIREADRTVEVFVGNGRGGLTALQRAEVAELGQAWLREGTGAIIAEVPSDT 103

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++ +    +++I+ ++ ++G+P   ++ + Y         TIRL Y      AG CG W
Sbjct: 104 PNARAASDTIREIQSVLSANGVPPRGVTVKHYRPADPRTFATIRLIYPKITAVAGPCGLW 163

Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  + K      NR + N GCA Q NLAA V NP DL  PR  TP    +R  +   
Sbjct: 164 PEDIGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPADLVQPRPETPAYTARRMVTNDV 223

Query: 241 YR 242
           YR
Sbjct: 224 YR 225


>gi|150398542|ref|YP_001329009.1| pilus biogenesis lipoprotein CpaD [Sinorhizobium medicae WSM419]
 gi|150030057|gb|ABR62174.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
           medicae WSM419]
          Length = 242

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 107/176 (60%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + E+ +DIP+ +G   +     D IRGF  +Y+N S+ V+ +++P  +V
Sbjct: 53  DYRTRHPIVLTEGERTIDIPVASGDTRLTQGTRDVIRGFAAEYRNASSGVVQIMLPRGSV 112

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  + +   K+IR+++  SG+    I E  YDA    D   IRLSY A       CG WP
Sbjct: 113 NGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVAITAQTAPCGAWP 172

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   NRN+ N+GCA Q+NLAAQ+ NP DL  PR ++P DAEQR + I  +R
Sbjct: 173 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWR 228


>gi|148256958|ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1]
 gi|146409131|gb|ABQ37637.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1]
          Length = 247

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DY+ R+PI + +  Q + + + +GRG + Y     + G    ++ +    +   +P+ T 
Sbjct: 45  DYKIRHPIAVEEGRQSIVVFVGSGRGGLTYQQRADVAGLARSWQREGTGAIVAEVPADTP 104

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +     ++I  ++ S G+P  SI+ R Y  D    +  +RLSY      AG CG WP
Sbjct: 105 NARAAADTYREIHAMLTSGGVPSRSITLRHYTPDDPRLLAAVRLSYPKIAAVAGPCGLWP 164

Query: 187 EDMLGNAK-----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  N        N+++ N+GCA Q NLAA + NP DL  PR        +R    ++Y
Sbjct: 165 DDLGPNIDNPSYSNNQHYHNFGCATQRNLAAMIDNPADLEQPRAEVAAYTPRRSALFEKY 224

Query: 242 RQ 243
           R+
Sbjct: 225 RK 226


>gi|146342079|ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278]
 gi|146194885|emb|CAL78910.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. ORS278]
          Length = 256

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DY+ R+PI + +  Q + + + +GRG +  P    + G    ++ +    +   +P+ T 
Sbjct: 54  DYKMRHPIAIEEGRQSIVVFIGSGRGGLTMPQRADVAGLARSWRREGTGAIVADVPAGTP 113

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ + + A ++I  ++   G+P  +I+ R    D    +  IRLSY      AG CG W 
Sbjct: 114 NARAAQDAYREIHAMLTEGGVPSRAITMRHPTPDDPRQLAVIRLSYPKIAAVAGPCGLWQ 173

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  N        N+++ N+GCA Q NLAA + NP DL  PR  T     +R    ++Y
Sbjct: 174 DDLGPNINNPGYSSNQHYQNFGCATQRNLAAMIDNPADLEQPRSETAAYTPRRSALFEKY 233

Query: 242 RQ 243
           R+
Sbjct: 234 RK 235


>gi|27376549|ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349690|dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 5/181 (2%)

Query: 68  YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVS 127
           Y+ R+PI + +  + + + +   RG +       + G    + ++    + +  PS T +
Sbjct: 43  YKQRHPIAIEEQNRSIVVFVGHARGGLTAAQRADVMGLASAWLHEGTGAIHIDAPSGTPN 102

Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187
           +  +  ++++I+ ++ ++G+P   I  R Y  +    +  IRL+Y      AG CG WPE
Sbjct: 103 ARPVAESMREIQAMLAAAGVPPRGIIARPYQPEDKRFLPPIRLTYSKIAAVAGPCGLWPE 162

Query: 188 DMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           D+  + K      N+ + NYGCAYQ NLAA V NP DL  PR  TP    +R  + ++YR
Sbjct: 163 DIGPSMKNKGWFENKEYYNYGCAYQRNLAAMVDNPSDLEQPRPETPSYTTRRTAAFEKYR 222

Query: 243 Q 243
           +
Sbjct: 223 K 223


>gi|222147181|ref|YP_002548138.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734171|gb|ACM35134.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 196

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 103/176 (58%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++  VE  +D+P+  G   +   + D + GF + Y+N S   + +L+P  + 
Sbjct: 9   DYRTRHPIIVTDVEHSLDLPVAQGSSRLTIGMSDAVTGFAQDYRNASTGYVQILVPQGSP 68

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +     + +R +++S GI    I ER Y A    D   IRLSY A+   AG CG WP
Sbjct: 69  NTMAASSIARQVRNLLVSKGIAAPKIVERPYRAGATGDAAPIRLSYVATTAVAGPCGQWP 128

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  +   N+NW N+GCA Q NLAAQV +P DL +PR +TP DAE+R   I  YR
Sbjct: 129 EDLSNDTAQNKNWQNFGCASQANLAAQVASPTDLIAPRGMTPIDAERRSTVIDNYR 184


>gi|27375776|ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27348914|dbj|BAC45930.1| pilV [Bradyrhizobium japonicum USDA 110]
          Length = 244

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI +++ ++ + I +   RG +       + G    +  +    + + +P  +
Sbjct: 41  TDYRQRHPIAVQEAKKSIVIFVGKARGGLSAAQQSDVAGTARDWVREGTGSVVVDVPIGS 100

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            +S +      +IR ++ S G+P  +I +  Y  +    + TIRLSY      AG CG W
Sbjct: 101 ANSRAAATTYHEIRSVLASGGVPSRAIVQHPYRPEDPGLLPTIRLSYSRIAAVAGPCGLW 160

Query: 186 PEDMLGNA-----KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           PED+  +        N+ + N GCA Q NLAA + NP DL  PR  TP    +RD +  R
Sbjct: 161 PEDVGPSILDPGYNENQPYFNLGCASQRNLAAMIDNPADLEQPRAETPVYTARRDIAFDR 220

Query: 241 YRQ 243
           YR+
Sbjct: 221 YRK 223


>gi|15963895|ref|NP_384248.1| hypothetical protein SMc04110 [Sinorhizobium meliloti 1021]
 gi|307315792|ref|ZP_07595306.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
           meliloti BL225C]
 gi|15073070|emb|CAC41529.1| Pilus assembly protein cpaD [Sinorhizobium meliloti 1021]
 gi|306898560|gb|EFN29233.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
           meliloti BL225C]
          Length = 226

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + E+ +DIP+ +G   +     D IRGF  +Y+N S+SV+ +++P  +V
Sbjct: 37  DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  + +   KDIR+++ +SG+    + E  YDA    D   IRLSY A       CG WP
Sbjct: 97  NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   NRN+ N+GCA Q+NLAAQ+ NP DL  PR ++P DAEQR + I  +R
Sbjct: 157 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212


>gi|115525750|ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
           BisA53]
 gi|115519697|gb|ABJ07681.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris
           BisA53]
          Length = 249

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 5/182 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI +++ +Q ++I +  GRG +  P    I    + + +++   + +  P+ T 
Sbjct: 47  DYRQRHPIAIQEADQTLNIFVGTGRGGLTGPQRAAIAAVAQSWLSEATGRIVIDQPAQTP 106

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +   +V++IR ++ ++GIP ++++ R Y          IR++Y     +AG CG WP
Sbjct: 107 NARAAADSVREIRALLAAAGIPTNAVAVREYQPSDPRLFAAIRVNYPRLVATAGPCGLWP 166

Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           +D+  +        N+   N+GCA Q NLAA V NP DL  PR  TP    +R  +  +Y
Sbjct: 167 DDLGPSVNNPGYIENKPSYNHGCAVQRNLAAMVENPADLVQPRAETPAYTARRTIAFDKY 226

Query: 242 RQ 243
           R+
Sbjct: 227 RK 228


>gi|227823972|ref|YP_002827945.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
 gi|227342974|gb|ACP27192.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234]
          Length = 234

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 108/176 (61%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + E+++DIP+ +G   +     D IRGF  +Y+N S  V+ +++P  + 
Sbjct: 53  DYRTRHPIVIAEGERVIDIPVASGDRRLTAGTRDVIRGFATEYRNASGGVIQIMLPRGSA 112

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +S + +   KDIR+++ +SG+P   + E  Y+A    D   IRLSY A       CG WP
Sbjct: 113 NSHAAQIVRKDIRRLLAASGVPPKRMIETGYEAVSPGDAAPIRLSYVAITAQTAPCGEWP 172

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   NRN+ N+GCA Q+NLAAQ+ NP DL  PR ++P DA QR + I  +R
Sbjct: 173 EDLTLNTLQNRNYYNFGCASQSNLAAQIANPTDLIGPRQMSPVDAAQRGEVIDAWR 228


>gi|118589704|ref|ZP_01547109.1| components of type IV pilus [Stappia aggregata IAM 12614]
 gi|118437790|gb|EAV44426.1| components of type IV pilus [Stappia aggregata IAM 12614]
          Length = 238

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 93/177 (52%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ +  + +D+P+      I  PI  TI  F ++ +      + +L+PS   
Sbjct: 43  DYRLMHPIVITEEPETLDLPVGRNTRNINGPIESTIAAFGQQSRQKGNGSVEILVPSGGA 102

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           + A++      IR+ +   G+  + IS R Y          IRLSY   + +AG+CG WP
Sbjct: 103 NEAAVHSITPKIRQALQQGGVSRNRISTRTYSVGDPGADAPIRLSYARMQATAGECGAWP 162

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
            ++ G    N N+ N+GCA Q NLAA V NP DL +PR   P D  +R   I++YR+
Sbjct: 163 RNIGGGFGENINYENFGCASQANLAAMVDNPSDLITPRASAPSDQGRRAVVIEKYRK 219


>gi|307320427|ref|ZP_07599844.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
           meliloti AK83]
 gi|306893993|gb|EFN24762.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium
           meliloti AK83]
          Length = 226

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 109/176 (61%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + E+ +DIP+ +G   +     D IRGF  +Y+N S+SV+ +++P  +V
Sbjct: 37  DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  + +   KDIR+++ +SG+    + E  YDA    D   IRLSY A       CG WP
Sbjct: 97  NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   NRN+ N+GCA Q+NLAAQ+ NP DL  PR ++P DAEQR + I  +R
Sbjct: 157 EDLALNTLVNRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212


>gi|159184217|ref|NP_353253.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|159139546|gb|AAK86038.2| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 193

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 103/176 (58%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI + + E  +DIP+ AG   +   + D +RGF + Y + S  ++ + +PS + 
Sbjct: 9   DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSP 68

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  R  K IR  +  +G+    I E  Y A    D   IRLSY A     G+CG WP
Sbjct: 69  NSATAARMAKQIRSTLSGAGVAQGKIMETRYAASPNGDSAPIRLSYVAVTAMTGQCGQWP 128

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   N+NW N+GCA Q+NLAAQ+ NP+DL  PR ++P DAE+R   I  YR
Sbjct: 129 EDLSDNTFANKNWYNFGCASQSNLAAQIANPMDLVGPRGMSPIDAERRAVVIDTYR 184


>gi|254503403|ref|ZP_05115554.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
 gi|222439474|gb|EEE46153.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11]
          Length = 221

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 98/176 (55%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR ++PI++ +  + +D+P+      ++ P+ DTI  F    +   +  + +L+P+   
Sbjct: 27  DYRYQHPIVVSEAPETLDLPVGKNTRNLRSPVTDTITSFAMDSRRHGSGNVEILVPTGAA 86

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           + +++   V DIR  +   G+    ++ R Y +        IRLSY   K + G+CG WP
Sbjct: 87  NESAVHAVVHDIRGALSRGGVNGKHVTTRTYRSTDSSADAPIRLSYARMKATTGECGAWP 146

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +++ G    N N+ N+GCA Q+NLAA V NP DL +PR +TP D  +R   I++YR
Sbjct: 147 KNIGGGIGENTNYYNFGCATQSNLAAIVENPSDLITPRAMTPSDQNRRAVVIEKYR 202


>gi|163757628|ref|ZP_02164717.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
 gi|162285130|gb|EDQ35412.1| components of type IV pilus [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 101/177 (57%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ + E+ VDIP+  G  E+   + + +RG    Y++ ++  + +++P  + 
Sbjct: 49  DYRTNHPIIVAEQERTVDIPVGTGDRELTTSMREIVRGAAHSYRSSASGAVRIMVPVGSA 108

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +       + KI+   G+P   I    Y      D   IR++Y A   S  KCG WP
Sbjct: 109 NAGAASILSGQVAKILQKEGVPRDRILSSPYSVSSPDDAAPIRIAYLAITASTEKCGRWP 168

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           ED+  +   N++W N+GCA Q+NLAAQ+ NP DL +PR ++P DAE+R   I+ YR+
Sbjct: 169 EDLAADTTENKHWANFGCASQSNLAAQIANPGDLIAPRGMSPIDAERRSTIIETYRE 225


>gi|304392383|ref|ZP_07374324.1| pilus assembly protein [Ahrensia sp. R2A130]
 gi|303295487|gb|EFL89846.1| pilus assembly protein [Ahrensia sp. R2A130]
          Length = 227

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 66/178 (37%), Positives = 104/178 (58%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           S+Y+ R+PI++ + EQ +DIP+ +    +         GF  KY+   +  + ++IP  +
Sbjct: 35  SNYKTRHPIVIDEKEQTLDIPVGSDTVRLPRAQESATEGFASKYRRSPSGTMTIMIPRHS 94

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            ++++ R     + +I+   G+P SSI    YDA        IR+SY A + S  +CG W
Sbjct: 95  PNASAARSMSHQVAEILRREGVPPSSIVTTSYDASRHGSAAPIRVSYHAVQASVERCGKW 154

Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           PED+ G    N+NW N+GCA QNN+AAQ+ NP DL +PR +T  DAE+R+  I+ YR+
Sbjct: 155 PEDLAGPNLDNQNWHNFGCANQNNMAAQIANPSDLVAPRGMTQADAERRNNVIEDYRE 212


>gi|114705455|ref|ZP_01438363.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540240|gb|EAU43360.1| pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + ++ +DIP++    ++       I  F  +++   A  + +L+P  + 
Sbjct: 38  DYRTRHPIVVSEADEAIDIPVVTSDQKLAMSDSGRIEDFAHRFRRSGADTMTVLVPYGSR 97

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +      +  + ++ +G+    I  + Y A   +    IRL++       G CG WP
Sbjct: 98  NAVAASSISHEAIRTLMKAGVRREQIVMQSYAAHDALGPTPIRLTFSTLVAQTGPCGRWP 157

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  +   N+N+ N+GCA Q NLAAQ+ +P DL SPR + P D E+RD+ I++YR
Sbjct: 158 EDL-NSTHENKNYANFGCATQQNLAAQIADPRDLLSPRGMGPVDGERRDQVIEKYR 212


>gi|209551760|ref|YP_002283677.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537516|gb|ACI57451.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y   ++  +++L P  + 
Sbjct: 54  DYRARHPIIVTEAEQTVDIPVASTDRRLTNAQRDLIRGFAANYIARASGPVYVLSPQGSP 113

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 114 NSAAAYQLRNQVRAELASRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAITTQCGQWP 173

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 174 KDI-SNDFTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 228


>gi|116249982|ref|YP_765820.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254630|emb|CAK05704.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 250

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 62  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPQGSP 121

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 122 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAVTTQCGQWP 181

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KDI-SNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 236


>gi|307943146|ref|ZP_07658491.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
 gi|307773942|gb|EFO33158.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4]
          Length = 237

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 95/178 (53%)

Query: 65  GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
            ++Y+ R+PI++ +  +++D+P+ A    +  P+  T++ F    +      + +L+PS 
Sbjct: 40  ATNYQLRHPIVVTEQPEVLDLPIGAHMRNLNGPLRGTVKAFGADSRKKGNGRVEILVPSG 99

Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
             + A++   V  IR  + + G+   +IS R Y  D       IRLSY   + +AG CG 
Sbjct: 100 GRNEAAVHALVPQIRSSLKAGGLSGGAISTRSYAVDNPSADAPIRLSYPRIQATAGPCGT 159

Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           W  D+      N ++ NYGCA Q+NLAA V NP DL +PR   P D  +R   +++YR
Sbjct: 160 WNGDIGRTFDRNVDYENYGCATQSNLAAMVENPSDLLTPRASAPADRMRRANVVEKYR 217


>gi|328545278|ref|YP_004305387.1| Pilus biogenesis lipoprotein CpaD [polymorphum gilvum SL003B-26A1]
 gi|326415020|gb|ADZ72083.1| Pilus biogenesis lipoprotein CpaD [Polymorphum gilvum SL003B-26A1]
          Length = 239

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 93/177 (52%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI++ +  + +D+P+      +     + +  F +  + +    + +L+PS  
Sbjct: 42  NDYRLRHPIVITEQAETLDLPVGQSTRNLNRDFAERVTEFGQASRRNGNGHVEILVPSGA 101

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185
            + A++      IR  +   G+  + +S R Y  D       IRL+Y   K SAG CG W
Sbjct: 102 ANEAAVHAVTPRIRSALALGGVSGTHVSTRSYPVDDATAQAPIRLAYTRIKASAGPCGEW 161

Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           P ++ G+   N+++ N+GCA Q NLAA V NP DL  PR +TP D  +R    Q+YR
Sbjct: 162 PANIGGSLNANQDYYNFGCATQANLAAMVDNPADLLGPRAMTPADQMRRATVFQKYR 218


>gi|110636322|ref|YP_676530.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium sp. BNC1]
 gi|110287306|gb|ABG65365.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Chelativorans
           sp. BNC1]
          Length = 226

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ + EQ++D+P+      +      ++ GF+E Y     +V+ +L+PS + 
Sbjct: 37  DYRTNHPIVLSEKEQVLDLPVGVFSYRMTPQQKMSLEGFMEHYGESGKAVVTVLVPSGSP 96

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  +  R  +DI + +   G+P   +    YDA        +R+SY     + G+CG WP
Sbjct: 97  NERAASRLSEDIAQFLYRRGVPKGHLQVLSYDA-PAEQASPVRVSYSVVAATTGQCGRWP 155

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+L     N+++ N+GCAYQNNLAAQ+ NP+DL  PR  TP DAE RD +I RY+
Sbjct: 156 EDLLDTT-ENKHYANFGCAYQNNLAAQIANPMDLLGPRKTTPIDAENRDTAIGRYK 210


>gi|325291658|ref|YP_004277522.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059511|gb|ADY63202.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 252

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 104/176 (59%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI + + E  +DIP+ AG   +   + D +RGF + Y + S  ++ + +PS + 
Sbjct: 68  DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSA 127

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +  + IR  +  +G+P   I E  Y A    D   IRLSY A     G+CG WP
Sbjct: 128 NSAAASKMARQIRSALSGAGVPSGKIMETRYAASPNGDAAPIRLSYVAVTAMTGQCGQWP 187

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+  N   N+NW N+GCA Q+NLAAQV NP+DL  PR ++P DAE+R   I  YR
Sbjct: 188 EDLSDNTFANKNWYNFGCASQSNLAAQVANPMDLVGPRGMSPIDAERRAVVIDAYR 243


>gi|315121890|ref|YP_004062379.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495292|gb|ADR51891.1| hypothetical protein CKC_00700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 224

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 141/243 (58%), Positives = 188/243 (77%), Gaps = 23/243 (9%)

Query: 1   MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
           MM + MI  +FGG+CFK L +               FFL      Q+ FLLLF G + LA
Sbjct: 1   MMRDIMIKEIFGGMCFKRLVS---------------FFLM-----QISFLLLFCGNNVLA 40

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
                +DYRDRYPI+M+KVE+ +DIPLL+GRG++   ++DTI+GF+++YK +S SV+F+L
Sbjct: 41  ---NQNDYRDRYPIVMKKVEKSLDIPLLSGRGKLPSDMYDTIKGFIDRYKQNSTSVIFIL 97

Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
           IP+PT+SS +I+ A+K+IR+ IIS+GIP SS+SER YDADY +D+DTIRLSYFAS+PSAG
Sbjct: 98  IPTPTISSHAIQDALKNIRRFIISNGIPSSSLSERSYDADYELDIDTIRLSYFASRPSAG 157

Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           KCGFWPED+LG++  N NW+NYGC+YQNNLAAQ+VNP+DLF+PR +TPPDA  RD+SI R
Sbjct: 158 KCGFWPEDILGSSLENSNWSNYGCSYQNNLAAQIVNPMDLFAPRSMTPPDAVHRDRSIHR 217

Query: 241 YRQ 243
           Y++
Sbjct: 218 YQE 220


>gi|13474661|ref|NP_106230.1| pilus assembly protein cpaD [Mesorhizobium loti MAFF303099]
 gi|14025416|dbj|BAB52016.1| pilus assembly protein; CpaD [Mesorhizobium loti MAFF303099]
          Length = 251

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ +  Q +D+P+ AG   +     DT+ GFL+ Y   +A  L + IPS + 
Sbjct: 61  DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTIQIPSGSA 120

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  +   A +D  ++ ++SG+  + I    Y A        +R+SY A +    KCG WP
Sbjct: 121 NEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGSSETSAPVRVSYIAVRAQTDKCGRWP 180

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED+L     N+++ ++GC+YQNNLAAQ+ NP DL  PR  T  DAE R K I  YR
Sbjct: 181 EDLLE-TSENKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGKVIDVYR 235


>gi|190889882|ref|YP_001976424.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|190695161|gb|ACE89246.1| pilus assembly protein [Rhizobium etli CIAT 652]
          Length = 252

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 62  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEGSP 121

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 122 NSAAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KDI-SNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236


>gi|260461948|ref|ZP_05810193.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
           opportunistum WSM2075]
 gi|259032195|gb|EEW33461.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
           opportunistum WSM2075]
          Length = 243

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ +  Q +D+P+ AG   +     DT+ GFL+ Y   +A  L + IPS + 
Sbjct: 53  DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPALTIQIPSGSA 112

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  + R A +D  ++ ++SGI  + I+   Y A        +R+S+ A +    KCG WP
Sbjct: 113 NEVAARAAGRDFARLAVASGIKRNRIAVVSYQAGSSEASAPVRVSFIAVRAQTDKCGRWP 172

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           ED++ ++  N+++ ++GC+YQNNLAAQ+ NP DL  PR  T  DAE R   I  YR
Sbjct: 173 EDLVESS-ENKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGAVIDVYR 227


>gi|86355865|ref|YP_467757.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279967|gb|ABC89030.1| pilus assembly protein [Rhizobium etli CFN 42]
          Length = 233

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 43  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 102

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +    +R  + + GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 103 NSAAADQLRNQVRAELTTRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 162

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 163 KDI-SNDLANQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 217


>gi|222084470|ref|YP_002542999.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721918|gb|ACM25074.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 235

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 105/176 (59%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++   E  VDIP+      +   + DT+RGF++ Y+  +   + ++ P  + 
Sbjct: 46  DYRQRHPIVLTDKEHRVDIPVSVSDRRLTSGMRDTVRGFVQDYRAHATGTVEIMTPRESA 105

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+     + IR+ +++SGIP + I++  Y A    D   IRL + A+      CG WP
Sbjct: 106 NSAAASALRRQIRQELMASGIPSARITDNYYPAGGPGDAAPIRLRFMATAAVTNACGQWP 165

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
            D+  NA  N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA+QR K I  YR
Sbjct: 166 ADLADNAFDNQNYYNFGCATQNNLAAQVANPTDLIAPRAMTPIDADQRSKVIDNYR 221


>gi|327194693|gb|EGE61539.1| pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 252

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 62  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEDSP 121

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +S +  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 122 NSTAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 182 KDI-SNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236


>gi|241207158|ref|YP_002978254.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861048|gb|ACS58715.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 235

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 46  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFATNYISRASGPVYVLSPQGSP 105

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +SA+  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG WP
Sbjct: 106 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAAGPGDAAPIRLSFTGTTAVTTQCGQWP 165

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +D+  N   N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 166 KDI-SNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 220


>gi|90419765|ref|ZP_01227674.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335806|gb|EAS49554.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 244

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + ++ +DIP++     + Y     +  F ++++   A  + +++P+ + 
Sbjct: 54  DYRTRHPIVVSEDQEAIDIPIVMSDARLSYANRGRVEHFGDRFRASGADSIQVMLPTGSA 113

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  +  R   +I + +    I    I  + Y A        IRL+Y       G CG WP
Sbjct: 114 NQYAAERVSHEIVEALRGRYISRDRIFVQPYSAVGAEGPTPIRLTYATLVAKTGPCGRWP 173

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           +DM  +   N+N+ N+GCA Q NLAAQ+ +P DL SPR V   DA +R   +  YR+
Sbjct: 174 DDM-TDTSENKNYFNFGCASQQNLAAQIADPRDLLSPRGVDSIDAGRRTTVLDNYRR 229


>gi|319785607|ref|YP_004145083.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171495|gb|ADV15033.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 245

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ +  Q +D+P+ AG   +     DT+ GFL+ Y   +A  L + +PS + 
Sbjct: 55  DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDRSAAPTLTIQVPSGSA 114

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           +  +   A +D  ++ ++SGI  + I    Y +        IR++Y + K    KCG WP
Sbjct: 115 NEVAATTAARDFARLAVASGIKRNRIVVTSYQSASAEASAPIRVAYISVKAQTDKCGRWP 174

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           ED++     N+++ ++GC+YQNNLAAQ+ NP DL  PR     D   R ++I  Y++
Sbjct: 175 EDLME-TSENKHYADFGCSYQNNLAAQMANPADLLGPRKSANIDPANRSQAIDVYQK 230


>gi|153008060|ref|YP_001369275.1| pilus biogenesis lipoprotein CpaD [Ochrobactrum anthropi ATCC
           49188]
 gi|151559948|gb|ABS13446.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
           anthropi ATCC 49188]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI + + EQ+ DIP+     ++       ++G +  Y+   + +L++L+PS T 
Sbjct: 42  DYRTNHPITIAEREQVTDIPVAQADQKLSPMQRGIVQGAIANYRRGGSGMLYVLVPSGTS 101

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           + A+  R   ++  ++   GI  ++I+   Y  +       IR+SY+A       CG WP
Sbjct: 102 NQAAAYRLSTEVSAMLRRGGIKANNIAIENYPVENPEAAAPIRISYYAMTAGTTPCGRWP 161

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
           +D+  +   N+++ N+GCA QNNLAAQV NP DL  PR+++P D+++  + + 
Sbjct: 162 DDL-ASTPENKHYANFGCASQNNLAAQVANPADLLGPRVMSPIDSDRTTERLN 213


>gi|188581661|ref|YP_001925106.1| pilus biogenesis lipoprotein CpaD [Methylobacterium populi BJ001]
 gi|179345159|gb|ACB80571.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Methylobacterium populi BJ001]
          Length = 247

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G I       I  FL +Y+     +L + +P    
Sbjct: 42  DVRTRHPIVLADADRSLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILVVELPRGVS 100

Query: 127 S--SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
              + S+ R   +IR++    G+P + I    Y          +RLS+   +   A KCG
Sbjct: 101 PGLAGSVERTGAEIRRLAAEMGVPAAGIRVANYPVANPTLASPLRLSFQRMQAKVADKCG 160

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N GCA Q NLAAQV +P+DL   R     D   R K + 
Sbjct: 161 LWPRDLGVSDLRANWSNEPTWNLGCATQANLAAQVADPIDLVRGRPEGRIDTVLRTKDLG 220

Query: 240 RYRQ 243
           + R+
Sbjct: 221 QLRE 224


>gi|23011548|ref|ZP_00051876.1| hypothetical protein Magn03006165 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 248

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G +       +  FL +Y+     +L + +P    
Sbjct: 43  DVRTRHPIVLADADRTLDVF-PTGVGHLDPRQRADLEAFLVEYRRYGRGLLLVEMPRGVS 101

Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
            + +  + R    IR++    G+P        Y          +RLS+   +   A +CG
Sbjct: 102 PALAGPVERTGAAIRRLAAEMGVPAGGFRIGDYPIANPALAAPLRLSFQRMQAKVADQCG 161

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N+GCA + N AAQV +P+DL   R     D  +R + I 
Sbjct: 162 LWPRDLGASDLRADWSNEPTWNFGCATRANFAAQVADPVDLVRGRPEGRIDTIRRTQDIG 221

Query: 240 RYRQ 243
           + R+
Sbjct: 222 QLRE 225


>gi|239833236|ref|ZP_04681565.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
           intermedium LMG 3301]
 gi|239825503|gb|EEQ97071.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum
           intermedium LMG 3301]
          Length = 239

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI + + EQ+ DIP+     ++       ++G +  Y+   + +L++L+PS   
Sbjct: 42  DYRTNHPITIAEREQVTDIPIAQADQKLSPMQRGIVQGAIANYRRSGSGMLYVLVPSGAS 101

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           + A+  R   ++   +  SGI  ++I+   Y  +       IR+SY+A       CG WP
Sbjct: 102 NQAAAYRLSTEVAATLRRSGIKANNIAIENYPVESPDAAAPIRISYYAITAGTTPCGRWP 161

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
           +D+  +   N+++ N+GC  QNNLAAQV NP DL  PR +TP D+++    + 
Sbjct: 162 DDL-ASTPENKHYANFGCVSQNNLAAQVANPADLLGPRTMTPIDSDRATARLN 213


>gi|218530655|ref|YP_002421471.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
           chloromethanicum CM4]
 gi|218522958|gb|ACK83543.1| pilus biogenesis lipoprotein CpaD [Methylobacterium
           chloromethanicum CM4]
          Length = 248

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G I       I  FL +Y+     +L + +P    
Sbjct: 43  DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101

Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
            + +  + R    IR++    G+P + +    Y          +RLS+   +   A KCG
Sbjct: 102 PALAGPVERTGASIRRLATEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N GCA Q+N+AAQV +P+DL   R     D   R K + 
Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221

Query: 240 RYRQ 243
           + R+
Sbjct: 222 QLRE 225


>gi|254561622|ref|YP_003068717.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
 gi|254268900|emb|CAX24861.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4]
          Length = 248

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G I       I  FL +Y+     +L + +P    
Sbjct: 43  DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101

Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
            + +  + R    IR++    G+P + +    Y          +RLS+   +   A KCG
Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N GCA Q+N+AAQV +P+DL   R     D   R K + 
Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221

Query: 240 RYRQ 243
           + R+
Sbjct: 222 QLRE 225


>gi|163851904|ref|YP_001639947.1| pilus biogenesis lipoprotein CpaD [Methylobacterium extorquens PA1]
 gi|163663509|gb|ABY30876.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Methylobacterium extorquens PA1]
          Length = 248

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G I       I  FL +Y+     +L + +P    
Sbjct: 43  DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLGEYRRYGRGILLVELPRGVS 101

Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
            + +  + R    IR++    G+P + +    Y          +RLS+   +   A KCG
Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N GCA Q+N+AAQV +P+DL   R     D   R K + 
Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221

Query: 240 RYRQ 243
           + R+
Sbjct: 222 QLRE 225


>gi|254473746|ref|ZP_05087141.1| components of type IV pilus [Pseudovibrio sp. JE062]
 gi|211957132|gb|EEA92337.1| components of type IV pilus [Pseudovibrio sp. JE062]
          Length = 218

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 1/176 (0%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ +V +  DIP+      +   +   +  F ++   D    + +L+PS + 
Sbjct: 21  DYRKRHPIVITEVPENFDIPVSGEARNLNRSLKTAVAAFGQQAIVDGNGFVEVLVPSGSA 80

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           + A++R     IR  +   G+  + I  R Y          +RLS+   K +   CG WP
Sbjct: 81  NEAAVRAISPQIRTALKQGGMEANKIVMRSYSVSDMAASAPVRLSFMRIKGAVRDCGNWP 140

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
             M+ N   N ++ N+GCA Q NLAA V NP DL  PR + P D  + +  + + R
Sbjct: 141 TGMVVNH-QNLDYHNFGCASQANLAAVVDNPTDLLRPRTLGPNDPSRTNVVLTKNR 195


>gi|240139027|ref|YP_002963502.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
 gi|240008999|gb|ACS40225.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1]
          Length = 248

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           D R R+PI++   ++ +D+    G G I       I  FL +Y+     +L + +P    
Sbjct: 43  DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101

Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183
            + +  + R    IR++    G+P + +    Y          +RLS+   +   A KCG
Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANLTLASPLRLSFQRMQAKVADKCG 161

Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239
            WP D+  +       N    N GCA Q+N+AAQV +P+DL   R     D   R K + 
Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221

Query: 240 RYRQ 243
           + R+
Sbjct: 222 QLRE 225


>gi|170750190|ref|YP_001756450.1| pilus biogenesis lipoprotein CpaD [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656712|gb|ACB25767.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Methylobacterium radiotolerans JCM 2831]
          Length = 247

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 66  SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           +DYR R+PI++    + +D+    G G +       +  F+ +Y+      L + +P   
Sbjct: 42  TDYRARHPIVLTDGTRSLDVF-PTGTGHLDPRQATDVDAFMLEYRRYGRGSLLMQVPQGV 100

Query: 126 V--SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182
                 ++ R    + ++   +G+    I+   Y          IRLS+   +   A  C
Sbjct: 101 PADQVVAVERTASVLGRLGTQNGVNGREIAVTGYAVAAPTLASPIRLSFQRMQAKVADAC 160

Query: 183 GFWPEDMLGN----AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
           G WP+D+  +       NR   N GCA Q+N+AAQV +P+DL   R     D  +R + I
Sbjct: 161 GLWPQDLGTSNFAIDYNNRPSWNLGCATQSNVAAQVADPVDLVRGRPEGRIDTVKRVRDI 220

Query: 239 QRYR 242
            + R
Sbjct: 221 GQLR 224


>gi|296444394|ref|ZP_06886359.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
           trichosporium OB3b]
 gi|296258041|gb|EFH05103.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus
           trichosporium OB3b]
          Length = 245

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYRDR+P+++      +D+        +     D I+ F+++Y+      + LL P+ + 
Sbjct: 48  DYRDRHPVVLADATTAIDVF---PEQRLDQATVDRIQSFVQRYRRLGHGQITLLAPTGSR 104

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCGFW 185
           ++ + R  V  +R+ +  SG+   ++    Y          +RLS+   K   A +CG W
Sbjct: 105 NT-ATRAGVDAVRRQLADSGV-AGAVYVGTYPVSDADLAAPVRLSFQGIKAKVADRCGQW 162

Query: 186 PEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           PED+   +      N    N+GCA Q  LAAQ+ +P DL SPR  TP D E R +++ + 
Sbjct: 163 PEDLASASSLKGWNNDTHWNFGCANQATLAAQIDDPRDLASPRGETPADIESRMRALNKV 222

Query: 242 R 242
           R
Sbjct: 223 R 223


>gi|170740620|ref|YP_001769275.1| pilus biogenesis lipoprotein CpaD [Methylobacterium sp. 4-46]
 gi|168194894|gb|ACA16841.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Methylobacterium sp. 4-46]
          Length = 249

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 64  EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123
           E +  + R+PI +    + +D+ +  G G +     D +  FL +++     VL + +P 
Sbjct: 43  EPASVQARHPIALADAPRNLDVFV-TGMGHVDPRQADDVDAFLLEFRRYGRGVLVIEVPR 101

Query: 124 P-TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGK 181
                  ++ R    +R+  ++ G+    +    Y          +RLS+   +      
Sbjct: 102 GGQAPGPAVARTAALLRERALARGVSARELVVAPYPVANASVAAPVRLSFQRMQAKVTST 161

Query: 182 CGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237
           CG WP D+  +       NR   N+GCAYQ+N A Q+ +P+DL   R     D   R + 
Sbjct: 162 CGLWPNDLGVSDPAVDVSNRTHWNHGCAYQSNFARQIADPVDLVRGRQEGRIDTISRTQD 221

Query: 238 IQRYR 242
           I+  R
Sbjct: 222 IESLR 226


>gi|220922780|ref|YP_002498082.1| pilus biogenesis lipoprotein CpaD [Methylobacterium nodulans ORS
           2060]
 gi|219947387|gb|ACL57779.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Methylobacterium nodulans ORS 2060]
          Length = 246

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 70  DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT-VSS 128
            R+PI++    + +D+ +  G G +     D I  FL +Y+     VL + +P    V  
Sbjct: 46  ARHPIVLADAPRSLDVFV-TGIGHVDPRQSDDIDAFLLEYRRYGRGVLVIEVPRGAQVPG 104

Query: 129 ASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP-SAGKCGFWPE 187
            ++ R    +R+  +  G+P   +    Y          +R+S+   +   +G CG WP+
Sbjct: 105 PAVARTAALLRERAVGRGVPARELVVAPYAVVNPAVAAPVRMSFQRMQARVSGACGLWPQ 164

Query: 188 DMLGNAKG----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           D+  +  G    N ++ NYGC+ + N A+Q+ +P+DL   R     D   R + I+  R
Sbjct: 165 DLGVSEPGFELRNESFWNYGCSTRANFASQIADPVDLVRGRQEGRIDTVSRTQDIESLR 223


>gi|300021855|ref|YP_003754466.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523676|gb|ADJ22145.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 245

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASV--LFLLIPSP 124
           D   R+PIL+ +   ++++ + AG   +       +  F+++++   A      +  P+ 
Sbjct: 50  DPEQRHPILVSQQPAVLNLHVAAGSEGLTPSQRSRVIDFIDRHRASDAGNSRFVISAPAG 109

Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
           + + A+   A  D R++I+  G   SSI+   Y A        +R+SY        +CG 
Sbjct: 110 SSNEAAAMDAASDTRRLILGGGYADSSIANEAYHASGRD--APLRISYLRYVAEGPECGR 167

Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
              + L  A  N  + N+GC+ Q NLAA V NP DL  PR +TP DA +R K  ++Y
Sbjct: 168 DWSENLARAYQNTPYPNFGCSSQRNLAAMVSNPADLLGPRTMTPSDANRRFKMYEKY 224


>gi|154250690|ref|YP_001411514.1| pilus biogenesis lipoprotein CpaD [Parvibaculum lavamentivorans
           DS-1]
 gi|154154640|gb|ABS61857.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Parvibaculum
           lavamentivorans DS-1]
          Length = 234

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 5/199 (2%)

Query: 48  FFLLLFYGTSALAYYD--EGSDYRDR--YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
           F L L +G +    ++  E + Y     +PI +      ++I ++ G+  +     + I 
Sbjct: 16  FALALAFGVAGCGGFNGAEQAHYDANYTHPISVEADVATLNIDVVPGQPGVTSTDRNAIA 75

Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
           GF   Y+      L +  PS + ++ +   A+ D+R+++   G+  + +S   Y A    
Sbjct: 76  GFAAGYRQRGHGPLTISTPSGSPNAGAAAVALSDVREVLSEHGVGGNDLSYTPYRASGTD 135

Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
           +   + LS+         CG W      +   N    N+GC+ QNNLAA V +P DL +P
Sbjct: 136 NSAPLILSFKRYVAKPTACGDWSGSYSYD-PSNGLLPNHGCSTQNNLAAMVADPGDLIAP 194

Query: 224 RMVTPPDAEQRDKSIQRYR 242
           R ++P DA +R   +++YR
Sbjct: 195 RNMSPADAARRGTVLEKYR 213


>gi|323137426|ref|ZP_08072504.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
           sp. ATCC 49242]
 gi|322397413|gb|EFX99936.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis
           sp. ATCC 49242]
          Length = 254

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DY DR+P+++ +   ++D+      G + Y     I+ F+E Y+      + LL P    
Sbjct: 56  DYHDRHPVVLAEAPHVIDLFPSVVHGGVDYTTEGRIKEFVEHYREFGHGQVTLLTPVGAP 115

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-GKCGFW 185
            SA+    V  +R+ + ++G+  + I    Y          IRLS+ + K    G+CG W
Sbjct: 116 YSAA---GVSAVRRALAAAGLRGN-ILVGTYSVTDPRLAAPIRLSFQSLKAKVSGRCGEW 171

Query: 186 PEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
           P D+          N+++ N+GCA Q  L+AQV +P DL  PR  T  D E R ++I R 
Sbjct: 172 PTDLASGTSLQGWENQSYWNFGCASQQTLSAQVADPRDLAVPRGETASDIEMRMRAINRV 231

Query: 242 RQ 243
           R+
Sbjct: 232 RR 233


>gi|114798148|ref|YP_761690.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
 gi|114738322|gb|ABI76447.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444]
          Length = 236

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 1/170 (0%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI + K  + +++ + A  GE+       I+ F+  Y       L L +P  + +     
Sbjct: 46  PIKVEKRTEFLEVSIDAYAGELSSSDRARIQDFMRGYVRRGHGPLVLSMPQVSSNPQLAV 105

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
            AV + R I    G+    IS            + + L+Y + +  A  C         N
Sbjct: 106 AAVAEARAIAWDMGVEYQEISGTA-HGSGSSVSEPMILAYQSYEAIAPNCPPKSTVDFSN 164

Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
              N      GC+ + NLAA +++P DL   R +   D  +R+  ++++R
Sbjct: 165 IDSNNQMETLGCSVRTNLAAMIIDPADLLGNRPLDRSDLARREVILEKFR 214


>gi|83859358|ref|ZP_00952879.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
 gi|83852805|gb|EAP90658.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633]
          Length = 218

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 79  VEQIVDIP--LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVK 136
             + V +   + A    + +   D I     +YK      L +  P    ++ +   A+ 
Sbjct: 32  APETVRVSMDVSALDNGLTWNQIDVIEAVAAEYKARGHGPLVISYPQNAGNADAAIGAIA 91

Query: 137 DIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN 196
           + R  +  +G+    IS   Y+A        +  S+   +  A +C     DM  + + N
Sbjct: 92  EARTRLYEAGLDWRQISGGAYEAGG-QASAPVIFSFTRYQAVAPECSTAWNDM-AHMRAN 149

Query: 197 RNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           ++W  +GCA  NNLA  V +P DL +PR V  PD+ +R   + RYRQ
Sbjct: 150 QDWPRFGCATANNLANMVADPRDLVAPRGVDAPDSARRQTVLDRYRQ 196


>gi|167648151|ref|YP_001685814.1| pilus biogenesis lipoprotein CpaD [Caulobacter sp. K31]
 gi|167350581|gb|ABZ73316.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
           sp. K31]
          Length = 234

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143
           ++ L+     +       + G L ++    A  + +  P     +    R    +R+ +I
Sbjct: 56  EVLLVLHAEGLSANQAQALDGLLNRWLAAEAREILVSAPIGGKDADVAGRMAFAVRQRLI 115

Query: 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYG 203
           + G P +S+    YDA  G+    +++ +         CG W  + +   + N+ + N+G
Sbjct: 116 AMGAPPASVRVVGYDAGAGLAAAPLKVGFLRYHAQVPTCGGW--ENIAATRDNKPYDNFG 173

Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           CA   N+AAQV NP DL SPR  TP D+ +RD  + +YR+
Sbjct: 174 CAVTANMAAQVANPEDLLSPRATTPVDSARRDTVLGKYRK 213


>gi|218670939|ref|ZP_03520610.1| pilus assembly protein [Rhizobium etli GR56]
          Length = 170

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 59/117 (50%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR R+PI++ + EQ VDIP+ +    +     D IRGF   Y + ++  +++L P  + 
Sbjct: 54  DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 113

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
           +SA+  +    +R  + S GI  S I    Y A    D   IRLS+  +     +CG
Sbjct: 114 NSAAAHQLRNHVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAVTTQCG 170


>gi|295690797|ref|YP_003594490.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
           segnis ATCC 21756]
 gi|295432700|gb|ADG11872.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter
           segnis ATCC 21756]
          Length = 229

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143
           +I L+     +       ++  + ++       L +  PS              +R+ +I
Sbjct: 57  EILLMVHATGLSDNQRVALQALVGRWLQAEGRELVVTAPSG------AGAMAVQVRERLI 110

Query: 144 SSGIPVSSISERIYDADYGMDVDTI-RLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202
             G P + +     D       + + R+ +   +    KCG   E +    + N+ + N+
Sbjct: 111 FLGAPAAHVRIVGADPSLP--PEPVLRVGFVRYEAEVPKCGQAWESL-TATRDNKAYENF 167

Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           GCA   N+AAQV NP DL  PR +TP DA +RD  + +YR+
Sbjct: 168 GCAVAANMAAQVANPEDLVRPRDMTPADAGRRDTVMGKYRR 208


>gi|114568971|ref|YP_755651.1| pilus biogenesis lipoprotein CpaD [Maricaulis maris MCS10]
 gi|114339433|gb|ABI64713.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Maricaulis
           maris MCS10]
          Length = 227

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 91  RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVS 150
              + +     +     +YK      L +  P    +  +   A+ + R      GI   
Sbjct: 53  DNGLTWAQQGMLAAVAAEYKARGHGPLVISYPQGAGNEDAAIGAIAEARSFFYEQGIDWR 112

Query: 151 SISERIYDADYGMDVDTIRLSYFASKPSAG-KC-GFWPEDMLGNAKGNRNWTNYGCAYQN 208
            I+   YDA        +  S+   +  A  +C G W  D +     N++ TN+GCA   
Sbjct: 113 VIAGGAYDARG-RQNGELIFSFTRYEAVAPAECDGSW--DQMALEFDNQHHTNFGCALAV 169

Query: 209 NLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           NLAA V +P DL +PR +   D  +R   I+ YR+
Sbjct: 170 NLAAMVADPRDLVAPRDMEAGDTGRRQTVIEGYRE 204


>gi|302381755|ref|YP_003817578.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192383|gb|ADK99954.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 222

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + L      +       +     ++  + A VL +  PS   +          I+  + +
Sbjct: 47  VALAVHDTGLSANQTRALEDIAGRFYAEGAPVLRIEAPSG--NDPVASEMAWRIKGALEA 104

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGC 204
           SG+    +    Y A        + + +   +    +CG    ++      N  + N+GC
Sbjct: 105 SGVSSYQVQVVTYVAPDPR--APVLVGFDTVRAVVPQCGTGWTNL-TRTGSNAGYGNFGC 161

Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           A   NLAAQ+ NP D+  PR +TP DA +R      YRQ
Sbjct: 162 AVNANLAAQIANPRDIVQPRTMTPVDAGRRAVVFDNYRQ 200


>gi|218508708|ref|ZP_03506586.1| pilus assembly protein [Rhizobium etli Brasil 5]
          Length = 150

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 143 ISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202
              G     I    Y A    D   IRLS+  +     +CG WP+D+  N   N+N+ N+
Sbjct: 36  RREGSRARKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNF 94

Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 95  GCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 134


>gi|254420868|ref|ZP_05034592.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
           sp. BAL3]
 gi|196187045|gb|EDX82021.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas
           sp. BAL3]
          Length = 205

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           I L      +    H  +R   +++    A V+ +  P+   S A+  +   D R  +  
Sbjct: 30  IALAVHEQGLSANQHAALRDLAQRFAAAGAGVIVIEAPAGEDSVAA--KTAFDTRAALAQ 87

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGC 204
            G+  + +    Y          + + +   + +  +CG    ++      N + +N+GC
Sbjct: 88  IGLDPNRLRVVSYAGPDPR--APVLVGFETVQAAVPRCGAAWGNL-SRTGDNMSGSNFGC 144

Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           A   NLAAQ+ +P D+ +PR +TPP+A +R     RYRQ
Sbjct: 145 AVTANLAAQIADPRDIAAPRALTPPEAGRRSVVFDRYRQ 183


>gi|16127174|ref|NP_421738.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
 gi|221235975|ref|YP_002518412.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
 gi|7208426|gb|AAF40193.1|AF229646_5 CpaD [Caulobacter crescentus CB15]
 gi|13424570|gb|AAK24906.1| pilus assembly protein CpaD [Caulobacter crescentus CB15]
 gi|220965148|gb|ACL96504.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 11/170 (6%)

Query: 74  ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133
           I +       +I L      +       +   + ++    A  L +  P    ++A    
Sbjct: 46  IKVDPAPD--EILLKPHASGLSANQSAALEALVSRWLAAEARELVVTAP----NTAGAMA 99

Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193
              +IR  +   G   + +     D     +   IR+ +   +    KCG   E++    
Sbjct: 100 I--EIRDRLAGLG-AGARVRVVGVDPASAEEGA-IRVGFVRYEARPIKCGQRWENL-AAT 154

Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           + N  + N+GCA   N+AAQV NP DL  PR +TP D  +RD  + +YR+
Sbjct: 155 RDNTVYDNFGCAMAANIAAQVANPEDLMRPRDMTPADTGRRDTVLGKYRR 204


>gi|218516618|ref|ZP_03513458.1| pilus assembly protein [Rhizobium etli 8C-3]
          Length = 102

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215
            Y A    D   IRLS+  +     +CG WP+D+  N   N+N+ N+GCA QNNLAAQV 
Sbjct: 1   SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNFGCATQNNLAAQVA 59

Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           NP DL +PR +TP DA++R+ +IQ YR
Sbjct: 60  NPEDLVAPRGMTPIDAQRRNNAIQEYR 86


>gi|254293215|ref|YP_003059238.1| type IV pili component-like protein [Hirschia baltica ATCC 49814]
 gi|254041746|gb|ACT58541.1| Type IV pili component-like protein [Hirschia baltica ATCC 49814]
          Length = 218

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 5/169 (2%)

Query: 74  ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133
           I +++    +++    G G +       +  F+E + +D    + L  P  +       R
Sbjct: 37  IEVKEQTHYLEL-TELGVGHLTPADRRRVELFVENFADDGYGPIVLSAPDGS---REAVR 92

Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193
           A+  IR I+  +G+   +I+   Y      +   + L+Y + +     C    E    + 
Sbjct: 93  AITSIRSILSRAGVLPDNITVGGYQPA-AGNAAPLVLAYKSYQAHVPGCSTVNEHDWTDL 151

Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           + N +  ++GCA   N+A  +  P DL   R +   D+ ++    ++YR
Sbjct: 152 RSNSSVGSFGCAVNENIAMMIAKPGDLLGERKIGDGDSSRQLTVYEKYR 200


>gi|304320648|ref|YP_003854291.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
           HTCC2503]
 gi|303299550|gb|ADM09149.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis
           HTCC2503]
          Length = 212

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 4/160 (2%)

Query: 71  RYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSAS 130
           R+PI + +    + IP+ + R  +       +  F+  Y+      + +  P+ T     
Sbjct: 33  RHPITVDQQAVTLTIPIDSTRSGLSRGDLQQLDRFVSAYRTKGYGPITVTAPAGTGRDLE 92

Query: 131 IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190
                  +R  +  SG+  + I               + +S+        +CG +  +  
Sbjct: 93  ANETAAAVRAALNDSGVAYADIQGAS---VTSSTAKEVMVSFVRYVAQGPQCGVFDNERA 149

Query: 191 GNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD 230
              + N +  N+GC+ Q+NLAA + +P DL   +  T  D
Sbjct: 150 ARFR-NLSHPNFGCSSQHNLAAMIADPRDLTRAQSTTTRD 188


>gi|218662338|ref|ZP_03518268.1| pilus assembly protein [Rhizobium etli IE4771]
          Length = 79

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
             +CG WP+D+  N   N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +I
Sbjct: 1   TTQCGQWPKDI-SNDFANQNYYNFGCASQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAI 59

Query: 239 QRYR 242
           Q YR
Sbjct: 60  QEYR 63


>gi|83312841|ref|YP_423105.1| Type IV pili component [Magnetospirillum magneticum AMB-1]
 gi|82947682|dbj|BAE52546.1| Type IV pili component [Magnetospirillum magneticum AMB-1]
          Length = 236

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 4/176 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI++ +   +      A    +     D +    E+     A  + + + +   
Sbjct: 30  DYRLSHPIVVEEKAAVALFARPAEGAALSDADRDRLGRLAEESARRGAGPIQISVGALPG 89

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD-VDTIRLSYFASKPSAGKCGFW 185
             A      + +   + + G+   S+S            +  +R+     +  A +CG +
Sbjct: 90  EEAGALAFAQTLADTLRAWGVGPVSVSVAGGADAVPQPGIAQVRV--PVWEAKAPECGNF 147

Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
              +  N   N   +N+GC+ Q N A  V NP DL   R  +  D  +    +++Y
Sbjct: 148 ERGLNPN-YSNAPHSNWGCSIQRNKALMVQNPADLVRARETSGRDGARATTVLEKY 202


>gi|46201038|ref|ZP_00207940.1| hypothetical protein Magn03010629 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 227

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 4/178 (2%)

Query: 67  DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           DYR  +PI + +   +      A    +     D +    E+     A  + + + + T 
Sbjct: 28  DYRLSHPIAVEEKAAVALFARPAPGAPLSDIDRDRLGRLAEESLRRGAGPIQITVGARTG 87

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD-VDTIRLSYFASKPSAGKCGFW 185
             A  +   + +   + + G+    ++            +  +R+     +  A +CG +
Sbjct: 88  EEADAQAFAQTLSDTMRAWGVGPVVVAVAGGADAVPQPGLAQVRV--PVWEAKAPECGTF 145

Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
              +  +   N   +N+GC+ Q N A  V NP DL   R  +  DA + +  +++Y +
Sbjct: 146 DRGLNPD-YANAPHSNWGCSIQRNKALMVQNPADLVRARDTSGRDANRANDVLEKYGK 202


>gi|315497464|ref|YP_004086268.1| pilus (caulobacter type) biogenesis lipoprotein cpad [Asticcacaulis
           excentricus CB 48]
 gi|315415476|gb|ADU12117.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Asticcacaulis
           excentricus CB 48]
          Length = 228

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 70  DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSA 129
           D+YP+        +    +  +  +       +     K          L +   T ++ 
Sbjct: 41  DQYPLQAESRTDALH-FKIHPKSGLSDNQRRALDQVARK--ASWNGGEALDMTILTANTP 97

Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
              RA   IR  +    + V ++S+   +      V  I   Y   +     C    E++
Sbjct: 98  DALRAGAAIRAYLNDHQVSVHAVSQTTAEGQPADVVSLITREY---RAVVNDCNLEWENL 154

Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
               + N    N GCA   NLAAQ+ +P D+ +P+  TP DA +R   I +YR+
Sbjct: 155 -AATRHNAAPQNLGCAINANLAAQIDDPRDIAAPQPATPGDAGRRTVIIDKYRK 207


>gi|329847254|ref|ZP_08262282.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842317|gb|EGF91886.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein
           [Asticcacaulis biprosthecum C19]
          Length = 219

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
           + +   T    +   A   I   +    +   ++S+    +     V    +SY   + S
Sbjct: 78  VDVQIITSPDPASMAAGNAIAGYLAGRDVSRDAVSQFSVQSQPVEIVTVNVVSY---RAS 134

Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238
              CG   E++    + N    N+GCA   NLAAQV +P DL  P   TP DA ++   +
Sbjct: 135 VPGCGQTWENL-AATRKNTPHANFGCAITANLAAQVADPRDLVDPATATPSDAGRKSVVL 193

Query: 239 QRYRQ 243
            +YR+
Sbjct: 194 DKYRR 198


>gi|103486616|ref|YP_616177.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
 gi|98976693|gb|ABF52844.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 87  LLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPS--PTVSSASIRRAVKDIRKIII 143
           + A  GE+       ++G F           + +  PS     S+ +  RA+ + R +++
Sbjct: 46  VAAKDGELPPSEQGRLQGWFDAMGIRYG-DRVAIEDPSLYGASSAQATVRAMVERRGLLL 104

Query: 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYG 203
           S  +PV++ +              IR+    +  S   C  W      N+  N   +NYG
Sbjct: 105 SKDVPVTTGAVPDGH---------IRVVVTRASASVPGCPDWNSKSSLNSL-NATSSNYG 154

Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           CA  +NLAA V +P DL      T  D     ++IQ YR
Sbjct: 155 CATNSNLAAMVADPNDLIKGTRDTGHDPVAATRAIQTYR 193


>gi|332188354|ref|ZP_08390079.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17]
 gi|332011583|gb|EGI53663.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17]
          Length = 230

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 22/178 (12%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS-VLFLLIPSPTVSSAS 130
           +  ++ + +  +D+ L   R            G+            + +  P+     A 
Sbjct: 32  HQPVVSQADYALDLALSGNRLAGDEAQR--FEGWARN-LQLGYGDRVTIEDPAGDAPGA- 87

Query: 131 IRRAVKDIRKIIISSGI---PVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187
                + I +++   G+   P +SI      A   +   TIR+    ++ +   C  W  
Sbjct: 88  ----YRQIAEMVGRYGLLVGPAASI------ARAPLAPATIRVVVTRARATVPGCPDWRS 137

Query: 188 DMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP--PDAEQRDKSIQRYRQ 243
           D+  +  GN + +N+GCA   NLAA V +P  L       P   D     ++I  +RQ
Sbjct: 138 DVAPDWVGNTS-SNHGCAINRNLAAMVADPTHLVHG-AEGPASADPAAATRAINIFRQ 193


>gi|296284553|ref|ZP_06862551.1| hypothetical protein CbatJ_13041 [Citromicrobium bathyomarinum
           JL354]
          Length = 214

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 20/179 (11%)

Query: 68  YRDRYPILMRKVEQ-IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           Y    P++  +     +D  + AG G +  P    + G+ E    D    + +   + + 
Sbjct: 33  YSLNQPVV--ERTHYTLD--VAAGPGGLPIPEQRRLAGWFEALDLDYGDRVAVEADTASP 88

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           ++ +    + +   +++S   PV+                  R+    S  +   C  W 
Sbjct: 89  ATIAAVAGIVERYGLLLSDQAPVTEGFVEPGRT---------RVVVTRSVATVPTCPNW- 138

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP---RMVTPPDAEQRDKSIQRYR 242
            D       N    NYGCA  +N AA V NP DL      R  +  +   R  +I+ YR
Sbjct: 139 TDDGDGNFANATSRNYGCATNSNYAAMVANPEDLVRGQSSRGGSSVNGSNR--AIEAYR 195


>gi|149186256|ref|ZP_01864570.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
 gi|148830287|gb|EDL48724.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21]
          Length = 217

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 26/182 (14%)

Query: 68  YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126
           Y  + P ++ +   ++D+        +       + G F           + +       
Sbjct: 35  YSVKQP-VVERSNYVLDL--NTTAEGLPVSEQQRLTGWFESMGLRYG-DRVAID---DGS 87

Query: 127 SSASIRRAVKDIRK---IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
           +S ++R  V +I     I+++ G PV++ +     A         R+    S  S   C 
Sbjct: 88  NSLAVRDDVAEIASRYGILVAEGAPVTAGNLGPGQA---------RVVITRSTASVPGCP 138

Query: 184 FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR---MVTPPDAEQRDKSIQR 240
            W   +  N  GN    NYGCA  +NLA+ V NP DL   +     T        K+I+ 
Sbjct: 139 DWSHTVEAN-DGNATNPNYGCATYSNLASMVANPEDLVQGQQGTGETIVTTS--TKAIEA 195

Query: 241 YR 242
           YR
Sbjct: 196 YR 197


>gi|85373130|ref|YP_457192.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
 gi|84786213|gb|ABC62395.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594]
          Length = 188

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 16/177 (9%)

Query: 68  YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126
           Y  + P ++ +    +D  +  G G +  P    + G F           + +  P  + 
Sbjct: 8   YSTKQP-VVERTNYTLD--VRTGPGGLSIPEQQRLSGWFEAMNLRYG-DRVSIEDPMLSG 63

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           S+      +     I++S G PV+S       A         R+    S  S   C  W 
Sbjct: 64  STKDAISQLAGRHGILVSDGAPVTSGYVEPGSA---------RVVITRSSASVPGCPDWS 114

Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP-RMVTPPDAEQRDKSIQRYR 242
                    N     YGCA   NLAA V +P DL             +  K+++ YR
Sbjct: 115 -VKSEMNYTNGTHPGYGCAINGNLAAMVADPEDLVKGDEGSGETYVRRGSKAVEAYR 170


>gi|326388863|ref|ZP_08210445.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206463|gb|EGD57298.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 233

 Score = 71.5 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
           +  ++ +     D+P L   G I+      +  +           + +  P+ +  + + 
Sbjct: 54  HQPVIERTNYTFDVPTL-PDGGIEPAQLRRLSDWFSALGLKFGDRVSIDDPASSAVTRAA 112

Query: 132 RRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLG 191
             AV     ++++   PV+            +   T+R+    +  S   C  W +    
Sbjct: 113 VEAVMSRFGLMLNGAAPVTE---------GALAGGTVRIVVSRTYASVPGCPDW-KARSD 162

Query: 192 NAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR-MVTPPDAEQRDKSIQRYR 242
               N    N+GCA   N+AA V N  DL   +  V         K+I  YR
Sbjct: 163 ANFNNATSRNFGCATNANMAAMVANKEDLVHGQTGVGDTVVMSNTKAIDTYR 214


>gi|85707701|ref|ZP_01038767.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1]
 gi|85689235|gb|EAQ29238.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1]
          Length = 214

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 24/182 (13%)

Query: 68  YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126
           Y  + P++         + +   R  +       + G F           + +  PS   
Sbjct: 34  YSLKQPVV---ERTNFAMDVNTNRSGLSISEQQRLNGWFETMDLRYG-DRVAIEDPSSNP 89

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDT--IRLSYFASKPSAGKCGF 184
              ++  AV ++             +            +     R+    S  S   C  
Sbjct: 90  ---AVAEAVNELAG--------RYGLIVTEVAPTTSGTLAPGQARVVITRSDASVPGCPD 138

Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR---MVTPPDAEQRDKSIQRY 241
           W      N   N +   YGCA  +N+AA + NP DL   +     T      R  +I+ Y
Sbjct: 139 WSTKSDMN-YNNASSPGYGCAINSNMAAMIANPEDLLEGQKGSGETVIATSNR--AIRTY 195

Query: 242 RQ 243
           R+
Sbjct: 196 RE 197


>gi|307293451|ref|ZP_07573297.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881517|gb|EFN12733.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum
           L-1]
          Length = 218

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 16/176 (9%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
           +  ++       D+      G +       +  +              L    +  + ++
Sbjct: 39  HQPVVSHTAFTYDVQAG-PDGGLTPLEARRLDDWFVS-IGLGYGDQVALATDASYYAPAL 96

Query: 132 RRAVKDIRKIIISSGIPVSSISER--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
           R  + DI        +    +        A        +RL    +      C  W  D 
Sbjct: 97  REGIADI--------VARHGMLVGEDSSAAAGSAPQGAVRLIVRRATARVPGCPDWS-DK 147

Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243
               +      N+GC    NLAA + NP DL      T  D      +++I  YR+
Sbjct: 148 PETDQQLGASANFGCGVNGNLAAMIANPEDLVRG-QTTDSDLRTATSNRAISTYRE 202


>gi|288956970|ref|YP_003447311.1| hypothetical protein AZL_001290 [Azospirillum sp. B510]
 gi|288909278|dbj|BAI70767.1| hypothetical protein AZL_001290 [Azospirillum sp. B510]
          Length = 234

 Score = 69.6 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 44  LGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
           L  L   ++  G +    Y E +  + +  + +   E  +    L+G   +     + +R
Sbjct: 14  LAGLLASVVLAGCTPTPLYQENTAVQQQLTVDVATAETTL--SPLSGARPLDGASVERLR 71

Query: 104 GFLEKYKNDSAS-VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
            F+ +   +     + + +   T         VK +  ++ ++G+P   IS         
Sbjct: 72  RFVME---EGNPYAVRIRL---TPGDRVADGVVKRVIAVLTAAGVPGRGISV---SMVNR 122

Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNW---------TNYGCAYQNNLAAQ 213
              + +RL    +      C     D L + + +               GCA   NL   
Sbjct: 123 PVGNELRLRRETATAVLPDCPPLNRDTLLDRENDTPLDLGRAPPPPPRLGCATTANLGLM 182

Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           + +P DL  P+   P      + ++ RYR
Sbjct: 183 LADPRDLIEPQRSGPASGALAEDTVGRYR 211


>gi|237678813|emb|CAQ57540.1| hypothetical protein [Bradyrhizobium elkanii]
          Length = 221

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 92  GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
             ++      +R F+          L + + + +       R +  +     + GI   +
Sbjct: 46  QSLRGSERHRLRNFIAHASGGRRDALHIDV-TGSP------RLIAQVAHEARAMGIAPYN 98

Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211
           I       D       +R+     +     C      +      N      GC+ +NNLA
Sbjct: 99  IRLAASPIDLPARFG-VRIEAITFEAHPPVCPSLSI-VGPAVNDNSFDPTLGCSTRNNLA 156

Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
             V +P+DL   R V     ++    +  Y
Sbjct: 157 VMVNDPIDLLDNRSVMTSSGDRAASPLASY 186


>gi|13475295|ref|NP_106859.1| hypothetical protein mlr8762 [Mesorhizobium loti MAFF303099]
 gi|14026046|dbj|BAB52645.1| mlr8762 [Mesorhizobium loti MAFF303099]
          Length = 186

 Score = 67.3 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PIL+R    ++ +        ++      +R FL++  +     L LLI   +       
Sbjct: 32  PILIRPETTVLIL------KSLRASERQRLRVFLDRTSSGRRDALHLLI-WGS------S 78

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
           R   ++       GI   +I          + V+ I             C  +   +L +
Sbjct: 79  RLSAEVVHQARQMGIDTYNIHLLDQHDGGAVQVEAI-----VYHARPPACPSYS--LLSD 131

Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
               +     GC+ + NLAA V +P DL   + V P D E+    +  YR
Sbjct: 132 KSFEKP---LGCSTRRNLAAMVNDPRDLLDNQAVEPSDGERAAIPVATYR 178


>gi|294012434|ref|YP_003545894.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S]
 gi|292675764|dbj|BAI97282.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S]
          Length = 222

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 16/176 (9%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
           +  ++       D+      G +       +  +              +       S ++
Sbjct: 43  HQPVVSNAAFTYDVQAG-PDGGLTASEARRLDDWFVS-IGLGYGDQVAIATDAGYYSPAL 100

Query: 132 RRAVKDIRKIIISSGIPVSSISER--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
           R  + D+        +    +                 +RL    +  S   C  W  D 
Sbjct: 101 REGIADV--------VARHGMLVGEDGTAVAGAAPQGAVRLIVRRAIASVPGCPDWS-DK 151

Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243
               +     TN+GC    NLAA + NP DL      T  D      +++I  YR+
Sbjct: 152 PETDQQLGTSTNFGCGVNGNLAAMIANPEDLVRG-QTTDSDLRTATSNRAISTYRE 206


>gi|84386796|ref|ZP_00989821.1| putative lipoprotein [Vibrio splendidus 12B01]
 gi|84378324|gb|EAP95182.1| putative lipoprotein [Vibrio splendidus 12B01]
          Length = 207

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
           +       I  F+ +        L  L+     ++       + +R  +I SG+  S IS
Sbjct: 46  LSAQEKADISDFIAR-----RGTLSNLMVKIENTTQKGESQSEKVRLRLIESGLYPSQIS 100

Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKC--GFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211
                A    D   I +   + +     C  G  P   L   +  R   N+GCA  N LA
Sbjct: 101 VSDTAAQGKGD---ITIFVESYRAKVTACDAGKTPRTTLNAYRTQR---NFGCANANALA 154

Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
             V NP DL   + +     ++   SI  Y
Sbjct: 155 QMVANPKDLIVGQPIDSAQGQKAVSSIDNY 184


>gi|94497255|ref|ZP_01303827.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58]
 gi|94423360|gb|EAT08389.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58]
          Length = 215

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
           +  ++       D+   +G   +       +  +              ++     +    
Sbjct: 35  HQPVVSHAAYTFDVMAGSGDT-LPPAEAARLNDWFVS-IGLGYGDQVAIV-----NDGYY 87

Query: 132 RRAVKD-IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190
             A+++ I  ++   G+ V                 +IRL    +  S   C  W     
Sbjct: 88  GPALREGIANVVARHGLLVGE---DSSAIAGAAPQGSIRLIVRRATASVPGCPDWSAKQ- 143

Query: 191 GNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD----KSIQRYRQ 243
            +       +N+GC   +NLAA V NP DL   +     D++ R     ++I  YR+
Sbjct: 144 ESEMTLGTSSNFGCGVNSNLAAMVANPEDLVRGQS---SDSDLRTATSNRAISTYRE 197


>gi|148557760|ref|YP_001265342.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
 gi|148502950|gb|ABQ71204.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1]
          Length = 252

 Score = 64.6 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 34/214 (15%)

Query: 38  FLRTLMLGQLFFLLLFYGTSALA-YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKY 96
           F    +LG L  + L   T ALA  Y+ G      +  ++++ + ++D+P       +  
Sbjct: 45  FAGMTILGTLGIIAL-AATPALADRYNRG--VESVHQPVVQRSDYVLDVPAD----GLDP 97

Query: 97  PIHDTIRGFLEKYKNDSAS---VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
              D +    + +          + +   +          + +DI +I    G     + 
Sbjct: 98  AARDRV---GQWFDAIGLGYGDRIAIDTSAGG------TGSNRDIAEIAGRYG-----LF 143

Query: 154 ERIYDADYGMDVDT--IRLSYFASKPSAGKCG---FWPEDMLGNAKGNRNWTNYGCAYQN 208
                      +    +R+    S  S   C     W +     A      +NYGCA  +
Sbjct: 144 VGSAAPMTEGAIAPGHVRIVVSRSTASVPGCPDYSQWSQPNFTAAAS----SNYGCAINS 199

Query: 209 NLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
            LAA V NP DL   +     +A+   K+I+ +R
Sbjct: 200 TLAAMVANPEDLVKGQAARGSNADTATKAIRIWR 233


>gi|87199100|ref|YP_496357.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134781|gb|ABD25523.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 223

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 92  GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
           G +       + G+ E         + +  P  + ++ S   AV     ++++ G     
Sbjct: 56  GGLSITEQRRLAGWFESLGLKYGDKIAVDDPLQSKATLSAVDAVAGRWGLMLADGAAP-- 113

Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211
                Y A        +R+    +  S   C  W E        N   TN+GCA  +NLA
Sbjct: 114 -VTPGYVAPGA-----VRVVVTRATASVPGCPSW-EYNSDMTLNNHTSTNFGCAVNSNLA 166

Query: 212 AQVVNPLDLFSP-RMVTPPDAEQRDKSIQRYR 242
           A V +   L                K+I  YR
Sbjct: 167 AMVADKEHLIQGASGTGETVVMSSTKAIDSYR 198


>gi|260778161|ref|ZP_05887054.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606174|gb|EEX32459.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 208

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 18/181 (9%)

Query: 65  GSDYRDRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS-VLFLLIP 122
            SD   R P I +  V   + + +   +  +       IR F+           L + + 
Sbjct: 18  ASDQIARQPAIDVVSVTNKLTLAV--EKQSLTPQQQQDIRSFI---VQRGNPYSLRVKLV 72

Query: 123 SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182
           S +         +K I  +++  G+    I           DV  I  S+   +     C
Sbjct: 73  SYSPKGQ---SQIKPISNLLLGQGLAKHQIMTERATGTQSGDVQVIVESF---RAKVPGC 126

Query: 183 GFWPEDMLGNAKGN--RNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           G    D       N  +    YGC+    LA  V NP DL     + P +  +   +I  
Sbjct: 127 G---TDKSQPVIFNQYKTHQAYGCSNAAALAQMVANPKDLVVGEKLGPTNGAKAVAAIDA 183

Query: 241 Y 241
           Y
Sbjct: 184 Y 184


>gi|19749314|gb|AAL98684.1| Y4xK [Sinorhizobium fredii]
          Length = 188

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 21/170 (12%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI +R+   ++ +        +       +  FL K        L L+I S +       
Sbjct: 32  PIFVRQESTVLKL------ESLHASEQQRLLAFLWKASRGRRDALHLVI-SGS------S 78

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
           R   +        GI  S+I           D   +R+           C      +L +
Sbjct: 79  RLSAEAVHQARQMGIGASNI-----HLLDQNDRGQLRVEAVVYHALPPICRSLSSQLLND 133

Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
              ++     GC+  +NLA  + +P DL   R V P D ++    +  YR
Sbjct: 134 EFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 180


>gi|227326303|ref|ZP_03830327.1| putative lipoprotein [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 228

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 73  PILMRKVEQIVDIPL---LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSA 129
           PI ++     V +PL     GRG +   +   +   L+     SA  L  LIP       
Sbjct: 51  PIAVQ--PSSVSVPLLVAPNGRGFLPESLR-QLNIMLKDQGRLSAQTLT-LIPHSASGEQ 106

Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
              R V     ++ ++G    ++ +    +        + +   A      +C       
Sbjct: 107 MAGRLV----TVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC----TIN 157

Query: 190 LGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
             N    + +    + GCA QNNLA  V  P DL   + +   D      SI+RY +
Sbjct: 158 DPNQLMVKPYEAMGSLGCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214


>gi|227114877|ref|ZP_03828533.1| putative lipoprotein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 228

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 13/174 (7%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI ++     V + +              +   L+     SA  L  LIP  T       
Sbjct: 51  PIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLT-LIPHSTSGEQMAG 109

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
           R       ++ ++G    ++ +    +        + +   A      +C         N
Sbjct: 110 RLA----TVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC----TINDPN 160

Query: 193 AKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
               + +    + GCA QNNLA  V  P DL   + +   D      SI+RY +
Sbjct: 161 QLMVKPYEAIGSLGCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214


>gi|148976306|ref|ZP_01813030.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
 gi|145964400|gb|EDK29655.1| putative lipoprotein [Vibrionales bacterium SWAT-3]
          Length = 195

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
           +       I  F+ +        L  L+   T ++      ++ +R  +I SG+  S I 
Sbjct: 34  LSDQEKADISDFMSR-----RGALNNLMVKITKTTLKGESQIEKVRLHLIESGLYPSQIW 88

Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKC--GFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211
                 +   D+  +  SY   +     C  G  P   +   +  R   N+GCA  N LA
Sbjct: 89  VADEATEGKGDITILVESY---RAKVTACDAGKTPRTTVNAYRTQR---NFGCANANALA 142

Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
             V NP DL   + ++    ++   SI+ Y
Sbjct: 143 QMVANPKDLIVGQPISGTQGQKAVSSIENY 172


>gi|16520027|ref|NP_444147.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii
           NGR234]
 gi|2496775|sp|P55703|Y4XK_RHISN RecName: Full=Uncharacterized lipoprotein y4xK; Flags: Precursor
 gi|2182719|gb|AAB91934.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii
           NGR234]
          Length = 188

 Score = 59.2 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 21/170 (12%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI +R+   ++ +                +  FL K        L L+I S +       
Sbjct: 32  PIFVRQESTVLKL------ESFHASEQQRLLAFLWKASRGRRDALHLVI-SGS------S 78

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
           R   +        GI  S+I           D   +R+           C      +L +
Sbjct: 79  RLSAEAVHQARQMGIGASNI-----HLLDQNDRGHLRIEAVVYHALPPICRSLSSQLLND 133

Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
              ++     GC+  +NLA  + +P DL   R V P D ++    +  YR
Sbjct: 134 EFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 180


>gi|253687069|ref|YP_003016259.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753647|gb|ACT11723.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 228

 Score = 59.2 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTV 126
           PI ++     V +PLLA             RGFL +              L     +   
Sbjct: 51  PIAVQ--PSSVSVPLLAAPNG---------RGFLPESLKQLNIMLKDQGRLSAQTITLIP 99

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
            SAS  +    +  ++ ++G    ++ +    +        + +   A      +C    
Sbjct: 100 HSASGEQMAGRLATVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC---- 154

Query: 187 EDMLGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
                N    + +    + GCA QNNLA  V  P DL   + +   D      SI+RY +
Sbjct: 155 TINDPNQLMVKPYEAIGSLGCATQNNLAMMVAEPRDLIQAKALDDADGVAAVNSIERYHK 214


>gi|149912020|ref|ZP_01900614.1| putative lipoprotein [Moritella sp. PE36]
 gi|149804919|gb|EDM64953.1| putative lipoprotein [Moritella sp. PE36]
          Length = 215

 Score = 59.2 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 70  DRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS 128
            R P + +  V   + + L      +       +  F+  ++    S L + I S +   
Sbjct: 30  QRQPQVKVEAVTHKIALQLDTEA--LTKSDKTALNEFI--FQRGELSALRIRIDSYSDKG 85

Query: 129 ASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPED 188
            +    V  +  ++ ++G+  S ++ ++ ++    D+  I  SY +       C    E 
Sbjct: 86  TNA---VPALIALLKNAGVYPSQVTSQLSESSSTADIALIVESYRSIV---PNCHAGKES 139

Query: 189 MLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
                + N +  N+GCA  + LA  V  P DL   R +   D  +   +++ Y
Sbjct: 140 HTVLNEFNSS-PNFGCANASALAQMVATPRDLIVGRTLDATDGRKAVATVEAY 191


>gi|251789647|ref|YP_003004368.1| pilus biogenesis lipoprotein CpaD [Dickeya zeae Ech1591]
 gi|247538268|gb|ACT06889.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Dickeya zeae
           Ech1591]
          Length = 223

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 7/170 (4%)

Query: 74  ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133
           I ++     V++        +      ++   L +    S   L +     T  +A   +
Sbjct: 47  IEVKPSSLAVNLQADRNGHGLDADSLASLNQLLNQQGRVSKQTLTI-----TPWTARGEQ 101

Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193
               +   + ++G   S I               +++   A       C      +L   
Sbjct: 102 IASRLANALENAGADKSRIRVMT-RVPAVNQSGDLQVLSQALAARVPACQVNDAGLLMVK 160

Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
             +      GCA Q+NLA  V  P DL   R +   D      SI+RY+Q
Sbjct: 161 PFDAVGY-LGCANQSNLAQMVAEPRDLIQARSLDAADGVNMVNSIERYQQ 209


>gi|27376952|ref|NP_768481.1| hypothetical protein bll1841 [Bradyrhizobium japonicum USDA 110]
 gi|12620549|gb|AAG60825.1|AF322012_130 ID279 [Bradyrhizobium japonicum]
 gi|27350094|dbj|BAC47106.1| bll1841 [Bradyrhizobium japonicum USDA 110]
          Length = 220

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
           +R F+          L + + S +       + +  +     + G+  S+I       + 
Sbjct: 56  LRNFIADASGGRRDALHVDV-SGS------HKLIAQVAHEARAMGVVPSNIRLSASPLNL 108

Query: 162 GMDVDTIRLSYFASKPSAGKCGFWPEDM--LGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219
                 +R+     +     C   P  +        N      GC+ +NNL   V +PLD
Sbjct: 109 SGRSA-VRIEAITFEAHLPNC---PSLLIAGPAVDDNSFEPTLGCSTKNNLGVMVNDPLD 164

Query: 220 LFSPRMVTPPDAEQ 233
           L   R V+  + ++
Sbjct: 165 LVDNRSVSTVNGDR 178


>gi|312883755|ref|ZP_07743474.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368504|gb|EFP96037.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 206

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
           +       +  F+++ K     +   L+      S S +R++  +  ++I  GI V +I 
Sbjct: 44  LSAEQSKAVEQFVQR-KGSPYGLNVKLV----SLSKSGQRSLDQVEALLIEQGIAVKNIH 98

Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212
                 +   DV  +  S+   K    KC    P +   N+   ++  ++GCA    L  
Sbjct: 99  REHLTKEGKGDVQILIESF---KAKIPKCRVKKPSNTFINSY--KSHPSFGCATSVALGQ 153

Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
            V NP DL     +   +  +   +I+ Y
Sbjct: 154 MVANPKDLVVGEQLGATNGAKAVATIEGY 182


>gi|261251597|ref|ZP_05944171.1| putative lipoprotein [Vibrio orientalis CIP 102891]
 gi|260938470|gb|EEX94458.1| putative lipoprotein [Vibrio orientalis CIP 102891]
          Length = 206

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
           +       +   +++ K     +   L+      S S +R +  I  ++I  GI   +I 
Sbjct: 44  LSAKQSKAVEQLVQR-KGSPYGLNVKLV----SLSKSGQRGLNQIEALLIDQGIAAKNIH 98

Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN-RNWTNYGCAYQNNLAA 212
                 +   DV  +  S+   K    KC    +    N     +   ++GCA    LA 
Sbjct: 99  REHLAENGKGDVQILIESF---KAKVPKCQA--QKYSNNFINRYKEHPSFGCATSVALAQ 153

Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
            V NP DL     +   +  +   +I  Y
Sbjct: 154 MVANPKDLVVGEQLGATNGAKAVATIDGY 182


>gi|319940441|ref|ZP_08014786.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806067|gb|EFW02816.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis
           3_1_45B]
          Length = 274

 Score = 56.9 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 113 SASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSY 172
           S   +   + +    S    +  + + + +  +G     ++  + +     D    R+S+
Sbjct: 124 SQGPIRRQVLTVVPLSERGEKLARRLAEALEEAGAQEPKLAVYVNEKTGKRDFPDRRVSW 183

Query: 173 ------FASKPSAGKCGFWPEDMLGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSP 223
                  A    A +C    E           +      GCA   N+A  V +P DL  P
Sbjct: 184 DLELISEAYVVHAPEC----EVADPTRWTIEPYEAVGTLGCANNANIAMMVSDPKDLLRP 239

Query: 224 RMVTPPDAEQRDKSIQRY 241
           R +   D    + ++Q+Y
Sbjct: 240 RALEGADGTASNLAVQKY 257


>gi|261820215|ref|YP_003258321.1| pilus biogenesis lipoprotein CpaD [Pectobacterium wasabiae WPP163]
 gi|261604228|gb|ACX86714.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD
           [Pectobacterium wasabiae WPP163]
          Length = 228

 Score = 56.5 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 21/178 (11%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTV 126
           P+ ++     V +PLL              RGFL +              L     +   
Sbjct: 51  PVAVQ--PSSVSVPLLVAPNG---------RGFLPESLRQLNIMLKDQGRLSAQTLTLIP 99

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG-FW 185
            SAS  +    +  ++ ++G    ++ +    +        + +   A      +C    
Sbjct: 100 HSASGEQMAGRLATVLKNAGADAQNVKQMR-RSTASGQTGDLEVISEALVVKTTRCTIND 158

Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
           P  ++        +   GCA QNNLA  V  P DL   + +   D      SI+RY +
Sbjct: 159 PNQLMVKPFDGIGY--LGCATQNNLAMMVAEPRDLIQAKALDNADGVAAVNSIERYHK 214


>gi|294139871|ref|YP_003555849.1| hypothetical protein SVI_1100 [Shewanella violacea DSS12]
 gi|293326340|dbj|BAJ01071.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 208

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%)

Query: 67  DYRDRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125
           D   R P I +  V  +  + LLA    +       +  FL   +    + L + I + +
Sbjct: 19  DPIQRQPNIAIEAVTHVFSLRLLAET--LDGEDRAALEEFLL--RRGDPANLRVRIETHS 74

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISE-RIYDADYGMDVDTIRLSYFASKPSAGKCGF 184
           +    +  +V+D+  +     I  S I   +   A    D+  +  SY          G 
Sbjct: 75  LRGEKVLTSVRDLMHL---RNIYPSQIRTLKRESASTSEDLTLVVESYRTLVRHCDA-GK 130

Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
            P+ +L + K +    N+GCA  + LA  V NP DL     ++  +  +   ++  Y
Sbjct: 131 EPKTILNSFKRS---ANFGCANASALAQMVANPRDLVVGETLSATEGRKAVSTLDAY 184


>gi|50119735|ref|YP_048902.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043]
 gi|49610261|emb|CAG73704.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043]
          Length = 228

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 13/174 (7%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI ++     V + +              +   L+     SA  L L+       SAS  
Sbjct: 51  PIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLTLI-----PHSASGE 105

Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192
           +    +  ++ ++G    ++ +    +        + +   A      +C         N
Sbjct: 106 QMAGRLATVLKNAGANAQNVKQMR-RSTASGQTGDLEVISEALVVKTTRC----TINDPN 160

Query: 193 AKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
               + +      GCA QNNLA  V  P DL   + +   D      SI+RY +
Sbjct: 161 QLMVKPYEAIGTLGCATQNNLAMIVAEPRDLIQAKALDGADGVAAVNSIERYHK 214


>gi|323493502|ref|ZP_08098624.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546]
 gi|323312325|gb|EGA65467.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546]
          Length = 206

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
           +     + I+ F E+ K  +  V   L+      SA  + +++ I +++I+ GI  ++I 
Sbjct: 44  LSSKQSEGIQQFFER-KGLAYGVKVKLV----SYSAIGKSSLEQIEQLLIAQGIAANNIQ 98

Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN-RNWTNYGCAYQNNLAA 212
                     DV  +  S+   K    KC    +    N     +   ++GCA    LA 
Sbjct: 99  RVDSKEQSQGDVQILAESF---KVKQPKCHV--QKYSNNFLNRYKQHPSFGCANSVALAQ 153

Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241
            V NP DL     + P +  +   SI+ Y
Sbjct: 154 MVANPKDLVVGEKLGPTNGAKAVSSIEGY 182


>gi|326797328|ref|YP_004315148.1| pilus biogenesis CpaD-related protein [Marinomonas mediterranea
           MMB-1]
 gi|326548092|gb|ADZ93312.1| Pilus biogenesis CpaD-related protein [Marinomonas mediterranea
           MMB-1]
          Length = 224

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 92  GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151
           G +K    D +   L      S+ V+ L   +   +  +       ++  ++S G+  S 
Sbjct: 55  GSLKKSALDGLNALLRNQGRLSSQVIRLQPYTDKGNVFASH-----LKDSLLSLGVQESK 109

Query: 152 ISERI--YDA--------DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
           +      Y A        +   D   + L+  A       C    +    +     +   
Sbjct: 110 LKILPIQYQATTIKPDLENDKQDKWDLSLTSEAMVVVTKDCSI-EDSQAWSVHSYESIGT 168

Query: 202 YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
            GCA + N+A  V +P DL   R +   D     +++ RY +
Sbjct: 169 LGCANRANIAQMVSDPRDLIRGRTLDDADGVHAVEAMTRYHE 210


>gi|298294453|gb|ADI75483.1| putative lipoprotein [Sinorhizobium fredii]
          Length = 54

 Score = 48.8 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           GC+  +NLA  + +P DL   R V P D ++    +  YR
Sbjct: 7   GCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 46


>gi|152994348|ref|YP_001339183.1| pilus biogenesis lipoprotein CpaD [Marinomonas sp. MWYL1]
 gi|150835272|gb|ABR69248.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Marinomonas
           sp. MWYL1]
          Length = 214

 Score = 48.4 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 201 NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
             GCA ++N+A  VVNP DL   R +   D      +++RY +
Sbjct: 158 TLGCANRSNIARMVVNPRDLIRARTLDSADGINAVGAVKRYHE 200


>gi|78062905|ref|YP_372813.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383]
 gi|77970790|gb|ABB12169.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383]
          Length = 126

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRM--- 225
           + +  +   A  C        L +A   R    +GCA  +NLAA +  P DL +P     
Sbjct: 33  IGFDGAHAVAPDCAKLMQPSHLVDAGFARPGVPFGCATYSNLAAMLARPEDLVAPVPYGG 92

Query: 226 ---VTPPDAEQR 234
               T  DA +R
Sbjct: 93  ADAQTAADAVRR 104


>gi|313813485|gb|EFS51199.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL025PA1]
          Length = 862

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 81  QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
           Q++++    G+  +       +  F+E  +      + ++ P  TV + +++       +
Sbjct: 48  QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGTPR 100

Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
            I  + +P   ++ + Y A         RL++  
Sbjct: 101 YITGAAVPPEVVTPQDYSAWIARQNGPARLAFGR 134


>gi|90406749|ref|ZP_01214942.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3]
 gi|90312202|gb|EAS40294.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3]
          Length = 211

 Score = 46.1 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 174 ASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233
           + +  A  C    +D        +   N+GCA  N LA  + NP +L     + P +  +
Sbjct: 121 SYRALARHC-QAQKDASIILNNFKRNPNFGCANSNALALMIANPRELLRSATLAPMEGRK 179

Query: 234 RDKSIQRY 241
               I+ Y
Sbjct: 180 AVSIIESY 187


>gi|83720007|ref|YP_442979.1| lipoprotein [Burkholderia thailandensis E264]
 gi|167581960|ref|ZP_02374834.1| hypothetical lipoprotein [Burkholderia thailandensis TXDOH]
 gi|167620124|ref|ZP_02388755.1| hypothetical lipoprotein [Burkholderia thailandensis Bt4]
 gi|257139203|ref|ZP_05587465.1| lipoprotein [Burkholderia thailandensis E264]
 gi|83653832|gb|ABC37895.1| hypothetical lipoprotein [Burkholderia thailandensis E264]
          Length = 139

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
             A  C        + +A   R   ++GCA   NLAA +  P DL +P   +  DA    
Sbjct: 55  ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYSGADAALGA 114

Query: 236 KSIQRY 241
            +++RY
Sbjct: 115 SAVRRY 120


>gi|167841782|ref|ZP_02468466.1| hypothetical lipoprotein [Burkholderia thailandensis MSMB43]
          Length = 139

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
             A  C        + +A   R   ++GCA   NLAA +  P DL +P      DA    
Sbjct: 55  ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 114

Query: 236 KSIQRY 241
            +++RY
Sbjct: 115 SAVRRY 120


>gi|126452011|ref|YP_001066151.1| putative lipoprotein [Burkholderia pseudomallei 1106a]
 gi|167911032|ref|ZP_02498123.1| putative lipoprotein [Burkholderia pseudomallei 112]
 gi|226196379|ref|ZP_03791961.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9]
 gi|242317370|ref|ZP_04816386.1| putative lipoprotein [Burkholderia pseudomallei 1106b]
 gi|254297712|ref|ZP_04965165.1| putative lipoprotein [Burkholderia pseudomallei 406e]
 gi|126225653|gb|ABN89193.1| putative lipoprotein [Burkholderia pseudomallei 1106a]
 gi|157807160|gb|EDO84330.1| putative lipoprotein [Burkholderia pseudomallei 406e]
 gi|225931596|gb|EEH27601.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9]
 gi|242140609|gb|EES27011.1| putative lipoprotein [Burkholderia pseudomallei 1106b]
          Length = 137

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
             A  C        + +A   R   ++GCA   NLAA +  P DL +P      DA    
Sbjct: 53  ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 112

Query: 236 KSIQRY 241
            +++RY
Sbjct: 113 SAVRRY 118


>gi|53719430|ref|YP_108416.1| putative lipoprotein [Burkholderia pseudomallei K96243]
 gi|76808779|ref|YP_333436.1| putative lipoprotein [Burkholderia pseudomallei 1710b]
 gi|121601162|ref|YP_993005.1| putative lipoprotein [Burkholderia mallei SAVP1]
 gi|124386034|ref|YP_001026337.1| putative lipoprotein [Burkholderia mallei NCTC 10229]
 gi|126439464|ref|YP_001058909.1| putative lipoprotein [Burkholderia pseudomallei 668]
 gi|126448960|ref|YP_001080389.1| putative lipoprotein [Burkholderia mallei NCTC 10247]
 gi|134282244|ref|ZP_01768949.1| putative lipoprotein [Burkholderia pseudomallei 305]
 gi|167919048|ref|ZP_02506139.1| lipoprotein, putative [Burkholderia pseudomallei BCC215]
 gi|217421405|ref|ZP_03452909.1| putative lipoprotein [Burkholderia pseudomallei 576]
 gi|237812166|ref|YP_002896617.1| putative lipoprotein [Burkholderia pseudomallei MSHR346]
 gi|254178529|ref|ZP_04885184.1| putative lipoprotein [Burkholderia mallei ATCC 10399]
 gi|254179871|ref|ZP_04886470.1| putative lipoprotein [Burkholderia pseudomallei 1655]
 gi|254188723|ref|ZP_04895234.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237]
 gi|254197664|ref|ZP_04904086.1| putative lipoprotein [Burkholderia pseudomallei S13]
 gi|254261709|ref|ZP_04952763.1| putative lipoprotein [Burkholderia pseudomallei 1710a]
 gi|254358539|ref|ZP_04974812.1| putative lipoprotein [Burkholderia mallei 2002721280]
 gi|52209844|emb|CAH35816.1| putative lipoprotein [Burkholderia pseudomallei K96243]
 gi|76578232|gb|ABA47707.1| putative lipoprotein [Burkholderia pseudomallei 1710b]
 gi|121229972|gb|ABM52490.1| lipoprotein, putative [Burkholderia mallei SAVP1]
 gi|124294054|gb|ABN03323.1| putative liporotein [Burkholderia mallei NCTC 10229]
 gi|126218957|gb|ABN82463.1| putative lipoprotein [Burkholderia pseudomallei 668]
 gi|126241830|gb|ABO04923.1| putative liporotein [Burkholderia mallei NCTC 10247]
 gi|134246282|gb|EBA46371.1| putative lipoprotein [Burkholderia pseudomallei 305]
 gi|148027666|gb|EDK85687.1| putative lipoprotein [Burkholderia mallei 2002721280]
 gi|157936402|gb|EDO92072.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237]
 gi|160699568|gb|EDP89538.1| putative lipoprotein [Burkholderia mallei ATCC 10399]
 gi|169654405|gb|EDS87098.1| putative lipoprotein [Burkholderia pseudomallei S13]
 gi|184210411|gb|EDU07454.1| putative lipoprotein [Burkholderia pseudomallei 1655]
 gi|217395147|gb|EEC35165.1| putative lipoprotein [Burkholderia pseudomallei 576]
 gi|237504103|gb|ACQ96421.1| putative lipoprotein [Burkholderia pseudomallei MSHR346]
 gi|254220398|gb|EET09782.1| putative lipoprotein [Burkholderia pseudomallei 1710a]
          Length = 137

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
             A  C        + +A   R   ++GCA   NLAA +  P DL +P      DA    
Sbjct: 53  ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 112

Query: 236 KSIQRY 241
            +++RY
Sbjct: 113 SAVRRY 118


>gi|167902786|ref|ZP_02489991.1| putative lipoprotein [Burkholderia pseudomallei NCTC 13177]
          Length = 115

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235
             A  C        + +A   R   ++GCA   NLAA +  P DL +P      DA    
Sbjct: 31  ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 90

Query: 236 KSIQRY 241
            +++RY
Sbjct: 91  SAVRRY 96


>gi|50843080|ref|YP_056307.1| putative type III restriction enzyme [Propionibacterium acnes
           KPA171202]
 gi|50840682|gb|AAT83349.1| putative type III restriction enzyme [Propionibacterium acnes
           KPA171202]
 gi|315106920|gb|EFT78896.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL030PA1]
          Length = 862

 Score = 43.4 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 81  QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
           Q++++    G+  +       +  F+E  +      + ++ P  TV + +++       +
Sbjct: 48  QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGSSR 100

Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
            I  S +P   ++ + Y A        ++L++  
Sbjct: 101 YITGSALPPEVVTPQDYSAWIARQNGPVQLAFGR 134


>gi|167590423|ref|ZP_02382811.1| hypothetical protein BuboB_34117 [Burkholderia ubonensis Bu]
          Length = 117

 Score = 42.2 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 202 YGCAYQNNLAAQVVNPLDLFSP 223
           +GCA   NLAA +  P DL +P
Sbjct: 56  FGCATYRNLAAMLARPEDLVAP 77


>gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 632

 Score = 41.8 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 96  YPIHDTIRGFLEKYK---NDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
                   GF   ++    + A +L +L+P      A++  A+  +     + G+P    
Sbjct: 96  GRKRAGKGGFSLTWRDLEREGAGLLLILLPD--APDATLSAALARMEAHARTGGLPGYVA 153

Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN 196
             R Y       +   R++  A        G  P         N
Sbjct: 154 LVRRYRPGDAARLA--RIADMAMTA-----GLRPVVTGDVLYHN 190


>gi|297627293|ref|YP_003689056.1| type III restriction enzyme [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296923058|emb|CBL57642.1| Putative type III restriction enzyme [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 857

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 78  KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKD 137
            V+Q++++    G+  +       +  F+E  +      + ++ P  TV + +++     
Sbjct: 45  DVQQVLNLATGVGKTYL-------MTAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPG 97

Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
             + I  S +P   ++ + Y A          LS+  
Sbjct: 98  SSRFITGSPVPPEVVTPQDYSAWIARTNGAAMLSFGR 134


>gi|162147492|ref|YP_001601953.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786069|emb|CAP55651.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 500

 Score = 41.1 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 198 NWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
           +W   G   Q+N+ AQV  P DL   R +   DA +   ++QR+R
Sbjct: 9   HWRPLG-TNQSNIEAQVERPQDLVHGRPLGDADAHEAAVAVQRWR 52


>gi|167836688|ref|ZP_02463571.1| putative lipoprotein [Burkholderia thailandensis MSMB43]
          Length = 130

 Score = 41.1 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 202 YGCAYQNNLAAQVVNPLDLFSPRM 225
           +GCA  +NLA  +  P DL +P+ 
Sbjct: 72  FGCATYSNLAVMLARPADLIAPQP 95


>gi|172041474|ref|YP_001801188.1| putative DNA restriction-modification system, restriction enzyme
           [Corynebacterium urealyticum DSM 7109]
 gi|171852778|emb|CAQ05754.1| putative DNA restriction-modification system, restriction enzyme
           [Corynebacterium urealyticum DSM 7109]
          Length = 876

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 81  QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
           Q++++    G+  +       +  F+E  +      + ++ P  TV + +++       +
Sbjct: 48  QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGAPR 100

Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174
            I  S +P   ++ + Y A          L++  
Sbjct: 101 YITGSAVPPEVVTPQDYSAWVARQNGAAELAFGR 134


>gi|146338603|ref|YP_001203651.1| amidase [Bradyrhizobium sp. ORS278]
 gi|146191409|emb|CAL75414.1| amidase [Bradyrhizobium sp. ORS278]
          Length = 501

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL-LIPSPTVSSAS- 130
           PI     +  + + ++AG   +             +  +  A+ L + ++P    ++ + 
Sbjct: 232 PITRTVADNALMLEVMAGPDGLDPRQRGAAAQPYTQALSQGAAGLRIGIVPEGFGTAGAE 291

Query: 131 --IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
             +   V++    + + G  +  +S     A        I L
Sbjct: 292 SEVDDRVREAAGRLQAKGADIREVSV-PLHAAGAAIWTPIFL 332


>gi|239928195|ref|ZP_04685148.1| cyclase [Streptomyces ghanaensis ATCC 14672]
 gi|291436525|ref|ZP_06575915.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339420|gb|EFE66376.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC
           14672]
          Length = 729

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/158 (9%), Positives = 43/158 (27%), Gaps = 39/158 (24%)

Query: 47  LFFLLLFYGTSALAYYDEGSDYRDR--YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG 104
           +  L  F+G S     D  +D      +     +     ++P +A    +       +  
Sbjct: 247 VLVLETFFGCSTQEAADTVNDVLTSRLHQF---EHTAFTEVPAVALEKGLTPDQVAAVAA 303

Query: 105 FL---EKYKNDSA-----------------SVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           +    + +++                          +      +++      D+R ++ +
Sbjct: 304 YAKGLQDWQSGGHEWHLRSSRYMNQGARTTGPWAAPVGPGGPGTSAA-----DVRALLAA 358

Query: 145 SGIPV---------SSISERIYDADYGMDVDTIRLSYF 173
            G P           + +   Y       +  IR+ + 
Sbjct: 359 PGAPGAPSAPWRRTRAHTHVPYQKVGPSLIPDIRMPFP 396


>gi|209515952|ref|ZP_03264813.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209503610|gb|EEA03605.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 124

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 202 YGCAYQNNLAAQVVNPLDLFSPRM------VTPPDAEQR 234
           +GCA   NLA  +  P DL +P         T   A +R
Sbjct: 66  FGCATLTNLAVMLARPEDLIAPLPYAGSDVTTAAGAVRR 104


>gi|171320619|ref|ZP_02909639.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gi|171094132|gb|EDT39219.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 126

 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214
               +         + +   +    +C        L +A   R    +GCA   NLA  +
Sbjct: 22  PPPINLPDARA---IGFDGVRAVPPECATLMQPSHLVDAGFGRPGVPFGCATYTNLATML 78

Query: 215 VNPLDLFSP 223
             P DL +P
Sbjct: 79  ARPEDLVAP 87


>gi|319941901|ref|ZP_08016222.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804554|gb|EFW01424.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis
           3_1_45B]
          Length = 207

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 30/158 (18%)

Query: 116 VLFLLIPSPTVSSASIR----------RAVKDIRKI---IISSGIPVSSISERIYDADYG 162
            +   +PS    +   R              ++      +++       +    Y    G
Sbjct: 31  SVTTTVPSGRAPAFEARADQVVVIDPADVAAELHTQVEPLLAETAGRDRVIVVSYSLAPG 90

Query: 163 MDVDTIRLSYFASKPSAGKCGFWPED----MLGNAKGNRN------WTN-------YGCA 205
            +     L +   + + G       D    +               W N       +  A
Sbjct: 91  DETLRSVLDFIKMRTAPGDVVKVERDFIAHLGLAVTVRDPKVSAYRWWNAQAVSDNFAHA 150

Query: 206 YQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
              NLA Q   P DL +PR +  P+ +    ++ RY++
Sbjct: 151 TARNLAQQAAVPSDLETPRALGDPNPQAAIGAVDRYQR 188


>gi|116250165|ref|YP_766003.1| acyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254813|emb|CAK05887.1| putative acyltransferase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 265

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + ++           + I G        +   + +L P  T             R + + 
Sbjct: 112 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGT--------TSDGNRLLEVK 157

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
           S +  ++     Y     + V  + ++Y      A          WP D+
Sbjct: 158 SSLFGAAAMAVPYSPTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 207


>gi|38234464|ref|NP_940231.1| hypothetical protein DIP1894 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200727|emb|CAE50428.1| Hypothetical protein DIP1894 [Corynebacterium diphtheriae]
          Length = 865

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 81  QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
           Q++++    G+  +       +  F+E  +      + ++ P  TV + +++       +
Sbjct: 48  QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGSPR 100

Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSY 172
            I  S +P   ++ + Y A         +LS+
Sbjct: 101 YITGSVVPPEVVTPQDYSAWVARQNGAAQLSF 132


>gi|315505262|ref|YP_004084149.1| beta-ketoacyl synthase [Micromonospora sp. L5]
 gi|315411881|gb|ADU09998.1| Beta-ketoacyl synthase [Micromonospora sp. L5]
          Length = 6765

 Score = 39.5 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 86   PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR----RAVKDIRKI 141
            P+  G G +     +TI  F  +    +   +  ++     ++A        A++++R++
Sbjct: 6186 PVAVGIGRLDP---ETIEAFAAELTRRAPGSVSFVVVEAASNAAGGVPVEPAALRELRRV 6242

Query: 142  IISSGIP----VSSISERIYDADYGM 163
              + G+P     S + +         
Sbjct: 6243 TAAHGVPLVLDASRVVDNAVQLAGPG 6268


>gi|115358172|ref|YP_775310.1| hypothetical protein Bamb_3422 [Burkholderia ambifaria AMMD]
 gi|115283460|gb|ABI88976.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 127

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214
               +         + +   +     C        L +A   R    +GCA   NLA  +
Sbjct: 22  PPPINLPDARA---IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATML 78

Query: 215 VNPLDLFSP 223
             P DL +P
Sbjct: 79  ARPEDLVAP 87


>gi|170703888|ref|ZP_02894571.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|172062960|ref|YP_001810611.1| hypothetical protein BamMC406_3929 [Burkholderia ambifaria MC40-6]
 gi|170131203|gb|EDS99847.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|171995477|gb|ACB66395.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 127

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223
           + +   +     C        L +A   R    +GCA   NLA  +  P DL +P
Sbjct: 33  IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATMLARPEDLVAP 87


>gi|61806229|ref|YP_214588.1| fiber [Prochlorococcus phage P-SSM4]
 gi|61563773|gb|AAX46828.1| fiber [Prochlorococcus phage P-SSM4]
          Length = 1318

 Score = 39.1 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 44/160 (27%)

Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156
             ++GF    + D                         I  ++++ G   +S+   S   
Sbjct: 658 TRVQGFAVGARQDGTG---------------ASAIADKINCLLVAQGATDASVQSASISP 702

Query: 157 YDADYGMDVDTIR---LSYFA----SKPSAGKCGFW-------PEDMLGNAKGNRNWT-- 200
           Y          +    L Y A        AG  G W         ++      N  +   
Sbjct: 703 YGPSVSGLAAGVVGSPLQYDANTYTISGVAGSVGGWYLSVSSVNNEIYTTLSTNTTYNTV 762

Query: 201 NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           N+          ++ +P DL            +    I +
Sbjct: 763 NF---TPTTFLKRIPDPRDL-----QDRTYRVR--YVIDK 792


>gi|50954943|ref|YP_062231.1| NAD synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648719|sp|Q6AER9|NADE_LEIXX RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|50951425|gb|AAT89126.1| NH3-dependent NAD+ synthetase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 279

 Score = 39.1 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER-IYDADYG 162
            FL +Y   + +  F+L  S    S+   R  +   + +   G+    I+ R  Y     
Sbjct: 29  DFLVRYVRAAGASGFVLGVSGGQDSSLAGRLCQLAVERLAEQGVAAEFIAVRLPYAVQND 88

Query: 163 MDVDTIRLSYFA 174
            D   + LS+  
Sbjct: 89  EDDAQLALSFIR 100


>gi|303256903|ref|ZP_07342917.1| heme ABC exporter, ATP-binding protein CcmA [Burkholderiales
           bacterium 1_1_47]
 gi|302860394|gb|EFL83471.1| heme ABC exporter, ATP-binding protein CcmA [Burkholderiales
           bacterium 1_1_47]
          Length = 231

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 72  YPILMRKVEQIVDI-----PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           +P+   + +  + +             +       +      Y +  A    L  P   +
Sbjct: 110 HPVTKEQADHALAMVGLEGFEDHYTRHLSQGQRRRV-ALARLYLSRHAGFWVLDEPFTAL 168

Query: 127 SSASIRRAVKDIRKIIISSGI 147
              ++      I + +   GI
Sbjct: 169 DVKAVANLANLIAEHVNEGGI 189


>gi|197123523|ref|YP_002135474.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter sp. K]
 gi|196173372|gb|ACG74345.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter sp. K]
          Length = 335

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 78  KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134
                +   + AGRG+       T  GF    +      +  L    P  T S     R 
Sbjct: 68  DAAYFLVHGMAAGRGDYVEEERRTAAGFARAAERAGTGRIVYLGGVAPQGTPSRHLASRL 127

Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187
              + +++ +  +P   +   +           +R                +  C  W  
Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185

Query: 188 DMLGN 192
           D++G 
Sbjct: 186 DVVGA 190


>gi|328871044|gb|EGG19416.1| OTU domain-containing protein [Dictyostelium fasciculatum]
          Length = 592

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 150 SSISERIYDADYGMDVDT-IRLSYFASKPSAGKCGFW----PEDMLGNAKGNRNWTNYGC 204
            SI           D    I LSY     S   CG W    P D+      N+ + N   
Sbjct: 169 RSIFISSPQPLAYADAQPHIILSYQRYLFSLLHCGHWTLQGPSDLEKLNYSNKIYENLQI 228

Query: 205 AYQNN 209
             Q N
Sbjct: 229 LVQKN 233


>gi|89897655|ref|YP_521142.1| hypothetical protein DSY4909 [Desulfitobacterium hafniense Y51]
 gi|219670784|ref|YP_002461219.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Desulfitobacterium hafniense DCB-2]
 gi|89337103|dbj|BAE86698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541044|gb|ACL22783.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Desulfitobacterium hafniense DCB-2]
          Length = 416

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
           PI +     ++D+ +          +   I  F    + + +  L++  P  T    +  
Sbjct: 38  PIRIDDAPHLLDVDV----------MCQVIGAFGASVRREGS-QLYINTPEITSLE-APH 85

Query: 133 RAVKDIRKIIISSG-IPVSSISERIYDADY 161
             V  +R  I++ G +   +   RI     
Sbjct: 86  DLVSQMRASIVTMGPVLARTGRVRISHPGG 115


>gi|218682220|ref|ZP_03529821.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase
           (phospholipid/glycerol acyltransferase) protein
           [Rhizobium etli CIAT 894]
          Length = 265

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + ++           + I G        +   + +L P  T             R + + 
Sbjct: 112 VFVVREEKRRTGHQANEIAG------RMADGEIVVLFPEGT--------TSDGNRLLEVK 157

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
           S +  ++     Y     + V  + ++Y      A          WP D+
Sbjct: 158 SSLFGAAAMAVPYSPTGTVVVQPLAIAYTRVHGIAMGRYHRPLAAWPGDI 207


>gi|87311447|ref|ZP_01093567.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645]
 gi|87285859|gb|EAQ77773.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645]
          Length = 284

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
           +  F+ +Y++           +        +RA++ +R      G+    I    + A  
Sbjct: 76  VSAFVVEYRHRGRGY------AHPAPIQDAQRAIRTVRARAEEFGVSPDKIGVMGFSAGG 129

Query: 162 GMDVDT 167
            +    
Sbjct: 130 HLASTA 135


>gi|330998847|ref|ZP_08322574.1| heme ABC exporter, ATP-binding protein CcmA [Parasutterella
           excrementihominis YIT 11859]
 gi|329576061|gb|EGG57580.1| heme ABC exporter, ATP-binding protein CcmA [Parasutterella
           excrementihominis YIT 11859]
          Length = 231

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 72  YPILMRKVEQIVDI-----PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
           +P+   + +  + +             +       +      Y +  A    L  P   +
Sbjct: 110 HPVTKEQADHALAMVGLEGFEDHYTRHLSQGQRRRV-ALARLYLSRHAGFWVLDEPFTAL 168

Query: 127 SSASIRRAVKDIRKIIISSGI 147
              ++      I + +   GI
Sbjct: 169 DVKAVANLANLIVEHVNEGGI 189


>gi|145558866|sp|Q9BZQ2|SHP1L_HUMAN RecName: Full=SHC SH2 domain-binding protein 1-like protein
          Length = 725

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 86  PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT--------VSSASIRRAVK 136
           P+  +GRG  K+P   +  G L +++  S       +P+ +            S      
Sbjct: 49  PIGQSGRGREKWPTAASALGLLRRWRRASK----ASVPADSFRTISPDRRGEKSASAVSG 104

Query: 137 DIRKI--IISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183
           D      +  + IPV S+             +T RL         A   G
Sbjct: 105 DTAAATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154


>gi|12620205|gb|AAG60617.1|AF288398_1 C1orf14 [Homo sapiens]
          Length = 725

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 86  PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT--------VSSASIRRAVK 136
           P+  +GRG  K+P   +  G L +++  S       +P+ +            S      
Sbjct: 49  PIGQSGRGREKWPTAASALGLLRRWRRASK----ASVPADSFRTISPDRRGEKSASAVSG 104

Query: 137 DIRKI--IISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183
           D      +  + IPV S+             +T RL         A   G
Sbjct: 105 DTAAATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154


>gi|220918321|ref|YP_002493625.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956175|gb|ACL66559.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 335

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 12/125 (9%)

Query: 78  KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134
                +   + AGRG+       T  GF+   +      +  L    P  T S     R 
Sbjct: 68  DAAYFLVHGMAAGRGDYVEEERRTAAGFVRAAERAGTGRIVYLGGVAPQGTPSRHLASRL 127

Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187
              + +++ +  +P   +   +           +R                +  C  W  
Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185

Query: 188 DMLGN 192
           D++G 
Sbjct: 186 DVVGA 190


>gi|320529880|ref|ZP_08030957.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis
           F0399]
 gi|320137898|gb|EFW29803.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis
           F0399]
          Length = 549

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 75  LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
           ++R + + +D PL      +       +   L       A VL L  P+  +++    R 
Sbjct: 458 VIRALPRGLDEPLGENAARLSGGQRSRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 515

Query: 135 VKDIRKIIISSG 146
           ++ I   + + G
Sbjct: 516 IRAILTELSAEG 527


>gi|121609321|ref|YP_997128.1| FAD linked oxidase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121553961|gb|ABM58110.1| FAD linked oxidase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 496

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 99  HDTIRGFLEKYK-NDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIY 157
              + G+L+ ++         +++PS T   A+  R    +R  +++ G    + S    
Sbjct: 20  EAEVAGYLQDWRGRYGGPAACVVLPSCTQQVAAAVRIAGRLRVPVLAQG---GNTSLSGG 76

Query: 158 DADYGMDVDTIRLSYFASKPS 178
              +      + ++    +  
Sbjct: 77  SVPWPDGAAPMLINLARMRAV 97


>gi|86159448|ref|YP_466233.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775959|gb|ABC82796.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 335

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 78  KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134
                +   + AGRG+       T  GF+          +  L    P  T S     R 
Sbjct: 68  DAAYFLVHGMAAGRGDYVEEERRTAAGFVRAAARAGTGRIVYLGGVAPQGTPSRHLASRL 127

Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187
              + +++ +  +P   +   +           +R                +  C  W  
Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185

Query: 188 DMLGN 192
           D++G 
Sbjct: 186 DVVGA 190


>gi|313895426|ref|ZP_07828983.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312976321|gb|EFR41779.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 548

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 75  LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134
           ++R + + +D PL      +     + +   L       A VL L  P+  +++    R 
Sbjct: 457 VVRALPRGLDEPLGENAARLSGGQRNRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 514

Query: 135 VKDIRKIIISSG 146
           ++ I   + + G
Sbjct: 515 IRAILTALSAEG 526


>gi|254409849|ref|ZP_05023630.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196183846|gb|EDX78829.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 325

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA---VKDIRKIIISSGIPVSSISERI 156
           D I    + Y+    + L ++   P  +    +       DIR +++  G+P S I    
Sbjct: 157 DRILYAAQLYRQSGNNPLVVVSAGPRPNLQGNQDQIVEANDIRSLLVQFGVPQSRIVLEP 216


>gi|326782772|ref|YP_004323170.1| fiber [Prochlorococcus phage P-RSM4]
 gi|310004031|gb|ADO98425.1| fiber [Prochlorococcus phage P-RSM4]
          Length = 1320

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 42/159 (26%)

Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156
             ++GF    + D                         I  ++++ G   +++   S   
Sbjct: 658 SRVQGFTVGARQDGTGN---------------SAIADKINCLLVAQGASSATVQSASISP 702

Query: 157 YDADYGMDVDTIR---LSY----FASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNN 209
           Y          +    L Y    +     AG  G W   +  ++  N  +       Q N
Sbjct: 703 YGPSVSGLAAGVTGSPLQYDSNTYTINGVAGSVGGWY--LSVSSTNNSIYEALANNTQYN 760

Query: 210 --------LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
                      ++ +P DL            +    I +
Sbjct: 761 TVSFTPTTFLKRIPDPRDL-----QDRTYRVR--YVIDK 792


>gi|320165665|gb|EFW42564.1| tRNA dihydrouridine synthase Dus2 [Capsaspora owczarzaki ATCC
           30864]
          Length = 503

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 55  GTSALAYYDEGSDYRDR---YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKN 111
           G SALA +   +  R R   +P +++ +   + IP++A  G +    HD I  F ++   
Sbjct: 153 GVSALAVHCRLTHERPREPGHPDMLKPIVDALSIPVIANGGSLDIVSHDDIEAFRQR--- 209

Query: 112 DSASVLFLLIPSPTVSSASIRRAVK-----DIRKIIISSGIP 148
                  +++     ++ S+ R        ++ + ++ +GI 
Sbjct: 210 --TGCASVMVARAAQNNPSVFRPEPLVPRLEMARQLLRTGIE 249


>gi|284041570|ref|YP_003391910.1| N-acetylmuramoyl-L-alanine amidase family 2 [Conexibacter woesei
           DSM 14684]
 gi|283945791|gb|ADB48535.1| N-acetylmuramoyl-L-alanine amidase family 2 [Conexibacter woesei
           DSM 14684]
          Length = 552

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 2/96 (2%)

Query: 83  VDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK-I 141
           VD       G +       I      + + S  V  +   + +    + + A+  +    
Sbjct: 229 VDRFGTVYEGRVGGVEQPVIGAHAGGWNSLSTGVAVIGSFTGSRPPQAAQDALTQVLAWK 288

Query: 142 IISSGIPVSSISERIYDADY-GMDVDTIRLSYFASK 176
           +  +G+P       I             R+++    
Sbjct: 289 LQLAGVPAQGTIGEISPGGAENRWSSGTRVAFQRIA 324


>gi|330818051|ref|YP_004361756.1| NAD dependent epimerase/dehydratase family protein [Burkholderia
           gladioli BSR3]
 gi|327370444|gb|AEA61800.1| NAD dependent epimerase/dehydratase family protein [Burkholderia
           gladioli BSR3]
          Length = 353

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 22/105 (20%), Gaps = 10/105 (9%)

Query: 79  VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDI 138
             Q++ +      G         I     +++                 S +        
Sbjct: 75  ARQVLLLAPPQPSGPDDRRTRALIAALGARHRARG----------GPARSGAAPVGRMRA 124

Query: 139 RKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183
                  G      +              +RL Y ++    G CG
Sbjct: 125 LAGAWRRGTDRGQAAPGAARIVPEGPSAPLRLVYASTSGVYGDCG 169


>gi|294142592|ref|YP_003558570.1| hypothetical protein SVI_3821 [Shewanella violacea DSS12]
 gi|293329061|dbj|BAJ03792.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 205

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 10/114 (8%)

Query: 79  VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTV--SSASIRR 133
            E+   +        +       +   L    N   + L L+    P  +   + A  +R
Sbjct: 73  QERTKVVMFDFDSSHLTNSEVGKVSELLGDLMNLPEARLLLIGDTSPEGSDSYNRALAQR 132

Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187
            V  I+++    G P  SI  + YD        +I              G W E
Sbjct: 133 RVDTIQELAKEVGFPTQSIISQTYDQSD-RTPTSISGREHRLIAV----GQWQE 181


>gi|303281901|ref|XP_003060242.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457713|gb|EEH55011.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 728

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 121 IPSPTVSSASIRRAVKDI---RKIIISSGIPVSSISERIYDADYGMDVDTIR 169
            PS + + A+ RRA+ DI   ++   ++G+   S S               R
Sbjct: 106 TPSRSPNGAAARRALTDIANAQRRASAAGVRSRSPSVSALPLTPTSASAPRR 157


>gi|240170624|ref|ZP_04749283.1| acyltransferase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 928

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 12/119 (10%)

Query: 69  RDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS 128
           R+ +P  + +             G +       +  F    ++  A  L ++  +     
Sbjct: 562 RNLHPAELEEA-----------VGNLTGVRKGCVAVFASADRSGGAERLVVVAETRLTED 610

Query: 129 ASIRRAVKDIRKIIIS-SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
           A+      +I    +   G+P   +               IR +       AG+ G  P
Sbjct: 611 AARAALRSEIASTTVDLLGVPPDDVVLAPPRTVLKTSSGKIRRAASRQLYEAGRIGARP 669


>gi|254236387|ref|ZP_04929710.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719]
 gi|126168318|gb|EAZ53829.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719]
          Length = 297

 Score = 36.8 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +A+   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186


>gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
 gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
           Flags: Precursor
 gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
          Length = 357

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 110 KNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169
           +      L + +P  +        +  ++R  ++  GI         Y        +  +
Sbjct: 60  RMRGRKTLLIELPEDSAREKEAEMSPGEMRTELLKRGIN-------PYKEAQPRVWNEAQ 112

Query: 170 LSYFASKPSAGKCGFWPEDMLGNAKGNRNW 199
           +++ +    A      PE+       N  +
Sbjct: 113 VTFQSIYGIADPYVP-PENPGSFTDVNNKF 141


>gi|326784408|ref|YP_004324638.1| fiber [Synechococcus phage S-SSM5]
 gi|310003639|gb|ADO98035.1| fiber [Synechococcus phage S-SSM5]
          Length = 1320

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 42/159 (26%)

Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156
             ++GF    + D                         I  ++++ G   +++   S   
Sbjct: 658 SRVQGFTVGARQDGTGN---------------SAVADKINCLLVAQGASSATVQSASISP 702

Query: 157 YDADYGMDVDTIR---LSY----FASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNN 209
           Y          +    L Y    +     AG  G W   +  +A  N  +       Q N
Sbjct: 703 YGPSVSGLAAGVTGSPLQYDSATYTINGVAGSVGGWY--LSVSATNNSIYDALANNTQYN 760

Query: 210 --------LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
                      ++ +P DL            +    I +
Sbjct: 761 TVSFTPTTFIKRIPDPRDL-----QDRTYRVR--YVIDK 792


>gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
 gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
          Length = 1178

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 33/106 (31%), Gaps = 8/106 (7%)

Query: 82   IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI 141
             +D+P+L     +   +         +    + +    + P+     A     V+ +  +
Sbjct: 1045 TLDVPVLRSTQRLLGGVVKLAGALGVRSLRLAMAEPGSVAPAELPRVAEAAAYVRQVAPL 1104

Query: 142  IISSGIPVSSISERIYDADYGMDVD-----TIRLSYFASKPSAGKC 182
               +G+    ++   +      D        +R++  A+      C
Sbjct: 1105 AARAGL---ELTVEAFPECLLADTAGRRERPLRVAGSATAAEPAPC 1147


>gi|15598629|ref|NP_252123.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102967|ref|ZP_01366885.1| hypothetical protein PaerPA_01004036 [Pseudomonas aeruginosa PACS2]
 gi|218890367|ref|YP_002439231.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254242119|ref|ZP_04935441.1| hypothetical protein PA2G_02848 [Pseudomonas aeruginosa 2192]
 gi|9949573|gb|AAG06821.1|AE004764_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126195497|gb|EAZ59560.1| hypothetical protein PA2G_02848 [Pseudomonas aeruginosa 2192]
 gi|218770590|emb|CAW26355.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 297

 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +A+   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186


>gi|296388050|ref|ZP_06877525.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 297

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +A+   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186


>gi|120603344|ref|YP_967744.1| hypothetical protein Dvul_2301 [Desulfovibrio vulgaris DP4]
 gi|120563573|gb|ABM29317.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 256

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 94  IKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152
           +       +RGF  E + +     L +   SP     ++   V DI     +SG   + +
Sbjct: 19  LVMTRRPLLRGFSGESFISTGRPPLVV---SPASGLHAVGGGVTDI-SPATASGTASARV 74

Query: 153 SERIYDADYGMDVDT--IRLSYFASKPSAGKCGFWPEDMLGNAKG 195
              +Y         T   RLS       AG    WP D+    + 
Sbjct: 75  WYALYAPSDNGQPTTDGRRLS--VILAEAGDQWQWPHDVSSGLRE 117


>gi|221134123|ref|ZP_03560428.1| 2-deoxy-D-gluconate 3-dehydrogenase [Glaciecola sp. HTCC2999]
          Length = 257

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
           + +P+   S   + +  K +     SSGI V++I+   ++ D   ++   +  Y +    
Sbjct: 157 ITVPAYAASKGGVAQITKALANEWASSGIQVNAIAPGYFETDNTTNIRNDKDRYESITAR 216

Query: 179 AGKCGFW--PEDMLGNA 193
              CG W  PED+ G  
Sbjct: 217 I-PCGEWGKPEDLAGAT 232


>gi|116620655|ref|YP_822811.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076]
 gi|116223817|gb|ABJ82526.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076]
          Length = 456

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165
            + Y N     L ++ P  + + A ++      R   +  G P    +   Y  D   +V
Sbjct: 142 AQHYINQGGMELAVMTPGGSWNEAGVKVGKYSFRSFALP-GHPEQRFAMFAYPWDLPDNV 200

Query: 166 DTIRLSYFASKPSAGKCGFWPEDMLG 191
             +   +  +         +   +  
Sbjct: 201 TPM--VFARNAAGTEATAQFWFKLFP 224


>gi|319949468|ref|ZP_08023527.1| hydrolase [Dietzia cinnamea P4]
 gi|319436872|gb|EFV91933.1| hydrolase [Dietzia cinnamea P4]
          Length = 693

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 25/127 (19%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-TVSS-------------- 128
           ++P   G       +       +  +  ++ +   +L+P     ++              
Sbjct: 399 ELPFAEGDRGGNPAVKALTDVVIPAWLREAHAPKDVLLPVGLVPNAVQRVYPFHLVRLGT 458

Query: 129 ---------ASIRRAVKDIRKIIISSGIPVSSISERIYDAD-YGMDVDTIRLSYFASKPS 178
                     ++   ++  R +    G+    ++ + Y              S    +  
Sbjct: 459 HYLFTLGFEPTVVAGLRLRRTLAAELGVAEDYVTVQGYSNSYGHYVTTPEEYSAQNYEGG 518

Query: 179 AGKCGFW 185
           A   G W
Sbjct: 519 ATIFGPW 525


>gi|116051453|ref|YP_789714.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586674|gb|ABJ12689.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 297

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +A+   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186


>gi|313108789|ref|ZP_07794776.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310881278|gb|EFQ39872.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 297

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +A+   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186


>gi|239621824|ref|ZP_04664855.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515015|gb|EEQ54882.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 321

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 100 DTIRGFLEKYKNDSASV---LFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS--E 154
           D +RG  E  ++  A +   + + +  P      +RR    IR       +P  SI    
Sbjct: 79  DDLRGLGECVRSSLAGMSPDVQVKVREPVRDEGLVRRWRISIRTAAQRRDLPSQSIKLEV 138

Query: 155 RIYDADYGMDVDTIRLSYFASKPSAG 180
               A        +R++Y +    AG
Sbjct: 139 ASVPAHEP-QTRPVRVNYPSVSAIAG 163


>gi|242060302|ref|XP_002451440.1| hypothetical protein SORBIDRAFT_04g002055 [Sorghum bicolor]
 gi|241931271|gb|EES04416.1| hypothetical protein SORBIDRAFT_04g002055 [Sorghum bicolor]
          Length = 439

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 79  VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKD 137
             ++ D PL+   G +        RG      + S   +FL   S + + +S    V D
Sbjct: 70  APEVRDKPLIDLGGRLSQSQDADARGLAGVAVHHSTGRVFLSYYSASPNGSSAASLVVD 128


>gi|322833415|ref|YP_004213442.1| aminotransferase class I and II [Rahnella sp. Y9602]
 gi|321168616|gb|ADW74315.1| aminotransferase class I and II [Rahnella sp. Y9602]
          Length = 401

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 180 GKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV---NPLDLFSPRMVTPPDAEQRDK 236
           G CG  P+D++     N N  N G       AA V     P DL   R       ++RD 
Sbjct: 249 GFCGG-PQDLIKAM-SNVNTQNSGGVTTLTQAAAVAVLNGPQDLLKERAE--IYRQRRDY 304

Query: 237 SIQRY 241
            ++R 
Sbjct: 305 VLERL 309


>gi|209548488|ref|YP_002280405.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534244|gb|ACI54179.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 307

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 13/148 (8%)

Query: 45  GQLFFLLLFYGTSALA-YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103
           G + F+++F   +A A +Y  G      +PI   +  Q  ++    G           + 
Sbjct: 52  GTITFVVIFSFVAANALWYQPGLHP---HPIFRTRDPQSSNV---LGARRPAEEQQGDVT 105

Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163
            F  + + +  +      P+P        + V DI++ ++  G+  + I           
Sbjct: 106 TFRIE-RPEDGATTTNATPAPAAPGQQPSQLVMDIQQQLVRRGL-YNGI---PDGVIGPR 160

Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLG 191
               I L +  +   A      PE +  
Sbjct: 161 TSAAI-LFFEETVGMAQTGDPTPEVLAA 187


>gi|227502928|ref|ZP_03932977.1| siderophore-interacting protein [Corynebacterium accolens ATCC
           49725]
 gi|227076350|gb|EEI14313.1| siderophore-interacting protein [Corynebacterium accolens ATCC
           49725]
          Length = 622

 Score = 36.1 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 82  IVDIPLLAGRGEIKYPI--------HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133
           +V++P  A   ++  P          D    F+EK +          +P     + +   
Sbjct: 185 VVEVPTSADIQDLDIPDSVQIHWAVRDQGEDFVEKSRALFEGTSQSALPGGEAYAWAAGE 244

Query: 134 AVKD--IRKIIISSGIPVSSISERIY 157
           A +   +R++  +SGI         Y
Sbjct: 245 ASRLKPLRRLFKASGISPEHREITGY 270


>gi|187251342|ref|YP_001875824.1| outer membrane protein [Elusimicrobium minutum Pei191]
 gi|186971502|gb|ACC98487.1| Outer membrane protein [Elusimicrobium minutum Pei191]
          Length = 217

 Score = 36.1 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL-----IPSPTVSSASIRRAVKDI 138
           DI    G  E+     + I    + +K    +++ +        S + +        + +
Sbjct: 101 DILFATGSAELSSQAINDIAAMSKVFKKYPYNIIVVEGHTDSTGSASFNQTLSENRARAV 160

Query: 139 RKIIISSGIPVSSISERIYDADYGMDV 165
              +I++ +   SI  R Y A   +  
Sbjct: 161 YNQLIANNVKTYSIGYRGYGASNPIAS 187


>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 219

 Score = 36.1 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 165 VDTIRLSYFASKPSAGKCGFWPED------MLGNAKGNRNWTNYGCAYQNNLAAQVVNPL 218
             TI   Y A   + G   +WP D      +      N NW N   A   NL A      
Sbjct: 4   AATITGMYHAMLATLGPSRWWPGDTPFEIAVGAILTQNTNWRNVEKAI-ANLKA-----R 57

Query: 219 DLFSPRMVTPPDAEQRDKSI 238
           DL S R +   D  +  + I
Sbjct: 58  DLLSARAMHALDTGELAELI 77


>gi|153003035|ref|YP_001377360.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152026608|gb|ABS24376.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 599

 Score = 36.1 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 99  HDTIRGFLEKYKNDSASVLFLLIP--SPTVSSASIRRAVKDIRKIIISSGIPVSS 151
              +R  L   +      L ++ P  S      + +R + ++R+ +   G PV  
Sbjct: 382 RAQLRALL---RASVHGNLRIMFPMISGVSELRAAKRLLAEVREELRREGAPVRE 433


>gi|260429940|ref|ZP_05783915.1| FAD dependent oxidoreductase [Citreicella sp. SE45]
 gi|260418863|gb|EEX12118.1| FAD dependent oxidoreductase [Citreicella sp. SE45]
          Length = 409

 Score = 36.1 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 6/102 (5%)

Query: 70  DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDS---ASVLFLLIPSPTV 126
            R P++    E+   +        + + I +  RGF              + L  P    
Sbjct: 260 ARLPLV---AERGYHVVFGESDVRLNHKIMNGTRGFGATGMEMGLQVTGTVELDSPGTAP 316

Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTI 168
           +        +  R++     +   S             +  I
Sbjct: 317 NWRRAEALARGARQMFREGALGPVSSRWMGNRPSLPDSLPVI 358


>gi|108763538|ref|YP_629555.1| putative lipoprotein [Myxococcus xanthus DK 1622]
 gi|108467418|gb|ABF92603.1| putative lipoprotein [Myxococcus xanthus DK 1622]
          Length = 160

 Score = 36.1 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160
            + GF   ++ D   VL L +     + AS    +  +   +   G  V+  ++++    
Sbjct: 37  RVVGFQVDFRQDGTGVLDLDL--AVTNPASDAATLAAVDFTLRVDGRRVAVGTQQVAAPL 94

Query: 161 YGMDVDTIRLSYFASKPSAG 180
                  +R+ +  +   A 
Sbjct: 95  AADGSAPLRVLFPLASARAT 114


>gi|288924078|ref|ZP_06418134.1| Beta-ketoacyl synthase [Frankia sp. EUN1f]
 gi|288344574|gb|EFC79047.1| Beta-ketoacyl synthase [Frankia sp. EUN1f]
          Length = 390

 Score = 36.1 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 124 PTVSSASIRRAVKD---IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
              +  +    V     +R  ++ +G+    +             D I L   A     G
Sbjct: 304 GGSNGLTAPSGVAQERVLRAALVDAGVSADGVDVVEGHGTGTRLGDPIELG--ALLGFMG 361

Query: 181 KCGFWPEDMLGNAKGN 196
             GFW   + G+ K N
Sbjct: 362 GAGFWSVFVGGSVKSN 377


>gi|313837570|gb|EFS75284.1| conserved domain protein [Propionibacterium acnes HL037PA2]
 gi|314927551|gb|EFS91382.1| conserved domain protein [Propionibacterium acnes HL044PA1]
 gi|314972509|gb|EFT16606.1| conserved domain protein [Propionibacterium acnes HL037PA3]
          Length = 320

 Score = 36.1 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 81  QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140
           Q++++    G+  +       +  F+E  +      + ++ P  TV + +++       +
Sbjct: 2   QVLNLATGVGKTYL-------MAAFIEYLRRQGVGNVVIVTPGKTVQAKTVQNFALGEPR 54

Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLS 171
            I  S +P   ++ + Y A          LS
Sbjct: 55  YIAGSSVPPEVVTPQDYSAWIARQNGAEILS 85


>gi|254465230|ref|ZP_05078641.1| phospholipid/glycerol acyltransferase [Rhodobacterales bacterium
           Y4I]
 gi|206686138|gb|EDZ46620.1| phospholipid/glycerol acyltransferase [Rhodobacterales bacterium
           Y4I]
          Length = 276

 Score = 36.1 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 26/152 (17%)

Query: 58  ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGF-LEKYKNDSASV 116
            + Y   GS  R R P ++      +DI  L  R  I +     + G+    +   +   
Sbjct: 76  GIRYTTRGSLMRQRGP-VVANHSSWLDIFALNARKRIYFVSKAEVAGWPGIGWLARATGT 134

Query: 117 LFLLIPSPTVSSASIRRAVKDIRKIIISS--------GIPVSSISERIY----------- 157
           +F+       +    R       + + +         G     +    +           
Sbjct: 135 VFIE-----RNPKKAREQADLFEQRLRAGHKLLFFPEGTSTDGLRVLSFKTTLFAAFFND 189

Query: 158 DADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189
               G+ V  + + Y A K +  +   W  DM
Sbjct: 190 HLRNGLHVQPVSVVYHAPKGAPARFYGWWGDM 221


>gi|333024772|ref|ZP_08452836.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332744624|gb|EGJ75065.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 324

 Score = 36.1 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142
           D+P   G   +  P    ++GF   ++            S T          +++RK +
Sbjct: 264 DLPDKDGLVSLTVPQVALLQGFTADWRIAGRKTSTYRQISQTTPPPVAAAVGREVRKAL 322


>gi|318057150|ref|ZP_07975873.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           SA3_actG]
 gi|318076182|ref|ZP_07983514.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
           SA3_actF]
          Length = 324

 Score = 36.1 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 84  DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142
           D+P   G   +  P    ++GF   ++            S T          +++RK +
Sbjct: 264 DLPDKDGLVSLTVPQVALLQGFTADWRIAGRKTSTYRQISQTTPPPVAAAVGREVRKAL 322


>gi|289706664|ref|ZP_06503012.1| oxidoreductase, short chain dehydrogenase/reductase family protein
           [Micrococcus luteus SK58]
 gi|289556584|gb|EFD49927.1| oxidoreductase, short chain dehydrogenase/reductase family protein
           [Micrococcus luteus SK58]
          Length = 311

 Score = 36.1 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 67  DYRDRYP---ILMRKVEQ-IVDI---PLL-------AGRGEIKYP-------IHDTIRGF 105
           D R R+P   +  ++  +  +D+   P+         G G +                  
Sbjct: 23  DPRTRHPKLRVAKQRQPEPGLDVKTDPVPDIGLDSYRGTGRLTGRKALVTGGDSGIGAAV 82

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165
              Y  + A V    +P     +  +  A++   +  ++       + +  Y A    + 
Sbjct: 83  AIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTAVAL---PGDLMDADYRAALVDEA 139

Query: 166 D 166
            
Sbjct: 140 A 140


>gi|33864192|ref|NP_895752.1| glycosyl transferase, group 1 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635776|emb|CAE22101.1| Glycosyl transferase, group 1 [Prochlorococcus marinus str. MIT
           9313]
          Length = 373

 Score = 36.1 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/117 (9%), Positives = 30/117 (25%), Gaps = 19/117 (16%)

Query: 72  YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131
           + + + +    VD+P +          +  +     +Y+        + I S       +
Sbjct: 98  HAVRVMQAAARVDVPFVVHFRGSDLSANRRLGVLRSRYRR------LVSIASG------V 145

Query: 132 RRAVKDIRKIIISSGIPVSSISERI-------YDADYGMDVDTIRLSYFASKPSAGK 181
               + +   +   G   S+I           +          + L+        G 
Sbjct: 146 VCKSRPMATTLEQLGASPSTILISPSGANPALFSVGDPALAAPVFLAVGRFVAKKGP 202


>gi|239917194|ref|YP_002956752.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus
           NCTC 2665]
 gi|281414335|ref|ZP_06246077.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus
           NCTC 2665]
 gi|239838401|gb|ACS30198.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus
           NCTC 2665]
          Length = 309

 Score = 35.7 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 67  DYRDRYP---ILMRKVEQ-IVDI---PLL-------AGRGEIKYP-------IHDTIRGF 105
           D R R+P   +  ++  +  +D+   P+         G G +                  
Sbjct: 21  DPRTRHPKLRVAKQRQPEPGLDVKTDPVPDIGLDSYRGAGRLTGRKALITGGDSGIGAAV 80

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165
              Y  + A V    +P     +  +  A++   +  ++       + +  Y A    + 
Sbjct: 81  AIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTAVAL---PGDLMDADYRAALVDEA 137

Query: 166 D 166
            
Sbjct: 138 A 138


>gi|152985568|ref|YP_001347077.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960726|gb|ABR82751.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 300

 Score = 35.7 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94
           L  L  G+L   L   G  AL +    ++YR RYP I +       + ++  +LAG  E+
Sbjct: 85  LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
              +     GF   Y+      L +L+P+    +++   A+ ++ 
Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKASAASVALGELA 186


>gi|264676674|ref|YP_003276580.1| lipoprotein A [Comamonas testosteroni CNB-2]
 gi|262207186|gb|ACY31284.1| rare lipoprotein A [Comamonas testosteroni CNB-2]
          Length = 247

 Score = 35.7 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           Y D+G   +   P      ++  D+P  + + E+  P      G    Y           
Sbjct: 67  YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 122

Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
                ++   +  + +    ++ + S +   S+  R    +        R+
Sbjct: 123 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 170


>gi|114319729|ref|YP_741412.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226123|gb|ABI55922.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 492

 Score = 35.7 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 55  GTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSA 114
            T A  + +EG       P  +   + +VD  L  G   +  P+    R  L+  K    
Sbjct: 97  ATVARRFQEEGGQIESWDPTGLADEDVVVDALLGTG---LDRPVEGRYREALQALKAAGV 153

Query: 115 SVLFLLIPSP-TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL--- 170
            VL + +PS     + ++     +    +   G+    ++         +  D + +   
Sbjct: 154 PVLAIDVPSGLNAGTGAVMGEAVEAHCTVTFIGLKPGLLTGAGPQCAGTLYFDDLGVPPE 213

Query: 171 SYFASKPSAGKC 182
            Y    P AG C
Sbjct: 214 IYQDMAPVAGLC 225


>gi|310821456|ref|YP_003953814.1| beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309394528|gb|ADO71987.1| Beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 1526

 Score = 35.7 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 97  PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
              D+I   +     ++     +   +P+    +     + I + +  +G+P  SI    
Sbjct: 263 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 317

Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGN 196
                 +  D + +S     + A     G CG      LG+ K N
Sbjct: 318 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSN 356


>gi|307194726|gb|EFN76964.1| hypothetical protein EAI_10347 [Harpegnathos saltator]
          Length = 167

 Score = 35.7 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 18/82 (21%)

Query: 110 KNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169
           +   +  L + +P      AS  R   ++RK+    G          +     + V  +R
Sbjct: 2   RRALSGALLIEVP-GLSVGASADRLADELRKLAAEMG--------PGFRVQRPVKVAPLR 52

Query: 170 LSYFASK---------PSAGKC 182
           L+  A+            AG C
Sbjct: 53  LAGLATTRAEEVTAAIARAGGC 74


>gi|320006706|gb|ADW01556.1| amino acid adenylation domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 2405

 Score = 35.7 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 30/178 (16%)

Query: 69  RDRYPILMRKVEQIVDIPLLAGRG-----EIKYPIHD-TIRGFLEKYKN---DSASVLF- 118
           R RYP++     Q++D P            +        +       +     +   +  
Sbjct: 95  RTRYPVVGGDPVQVIDAPAPVDLAEEDLTGLDPQDRAGRLAALGTSGRQPVDLADGPVVR 154

Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178
            ++        ++   V  I     S  + V  ++ER+             L Y      
Sbjct: 155 AVLARCAAEEHTLFVTVHHIAADGWSEDLLVRELTERLRQPAGPEPSAPA-LQYADFA-- 211

Query: 179 AGKCGFWPEDMLGNAK--GNRNWTNYGCAYQNNLA--AQVVNPLDLFSPRMVTPPDAE 232
                 W    LG  +      +       +  LA  A +  P D   PR     D  
Sbjct: 212 -----VWQRARLGEDRLEDGLGYW------RRRLAGVAPLELPTD--RPRPAVRDDTG 256


>gi|115379305|ref|ZP_01466416.1| oxidoreductase, short chain dehydrogenase/reductase family
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363687|gb|EAU62811.1| oxidoreductase, short chain dehydrogenase/reductase family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 1519

 Score = 35.7 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 97  PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156
              D+I   +     ++     +   +P+    +     + I + +  +G+P  SI    
Sbjct: 256 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 310

Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGN 196
                 +  D + +S     + A     G CG      LG+ K N
Sbjct: 311 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSN 349


>gi|307719095|ref|YP_003874627.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM
           6192]
 gi|306532820|gb|ADN02354.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM
           6192]
          Length = 676

 Score = 35.7 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 69  RDRYP----ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLE---KYKNDSASVLFLLI 121
           R R+P    IL  +      +P+    G I       I    E   +++ +  S L + +
Sbjct: 457 RWRHPREGLILPSEF-----VPIAEDTGLILPLGRWVISRAAEAWGRWRREGLSSLTISV 511

Query: 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153
            + +      R+ V  +R+ +   GIP   ++
Sbjct: 512 -NLSPQQIRDRQLVDHLRETLSQHGIPPGYLT 542


>gi|220917838|ref|YP_002493142.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955692|gb|ACL66076.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 761

 Score = 35.7 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 88  LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
            AGR ++   +     G     +   A  L +       ++A         R  + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209

Query: 148 PVSSISERIYDADYGMDVDTIRLS 171
           PVS+++          D+   R++
Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230


>gi|86157647|ref|YP_464432.1| hypothetical protein Adeh_1221 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774158|gb|ABC80995.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 761

 Score = 35.7 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 88  LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
            AGR ++   +     G     +   A  L +       ++A         R  + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209

Query: 148 PVSSISERIYDADYGMDVDTIRLS 171
           PVS+++          D+   R++
Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230


>gi|197123048|ref|YP_002134999.1| hypothetical protein AnaeK_2645 [Anaeromyxobacter sp. K]
 gi|196172897|gb|ACG73870.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. K]
          Length = 761

 Score = 35.7 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 88  LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
            AGR ++   +     G     +   A  L +       ++A         R  + + G+
Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209

Query: 148 PVSSISERIYDADYGMDVDTIRLS 171
           PVS+++          D+   R++
Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230


>gi|15595838|ref|NP_249332.1| bacteriophage protein [Pseudomonas aeruginosa PAO1]
 gi|9946517|gb|AAG04030.1|AE004499_9 probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
          Length = 1204

 Score = 35.7 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPTSGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823


>gi|258542353|ref|YP_003187786.1| hypothetical protein APA01_12600 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633431|dbj|BAH99406.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636490|dbj|BAI02459.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639543|dbj|BAI05505.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642599|dbj|BAI08554.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645654|dbj|BAI11602.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648707|dbj|BAI14648.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651760|dbj|BAI17694.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654751|dbj|BAI20678.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 125

 Score = 35.7 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 79  VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-----TVSSASIRR 133
             +   +   AG  E+     + +    EK K   + ++ +   +      +  +    +
Sbjct: 20  APRKYVVFFSAGSTELDDNARNVLLQVAEKSKRHPSRIVKVEGYAHAGQDLSADALLAIQ 79

Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGM 163
             K + + +   G+    I +         
Sbjct: 80  RAKAVAQQLSEDGVAGDHIVQTPRAPSSSE 109


>gi|299134224|ref|ZP_07027417.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
 gi|298590971|gb|EFI51173.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
          Length = 598

 Score = 35.7 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 23/159 (14%)

Query: 40  RTLMLGQLFFL-------LLFYGTSALAYYDEGSDY--RDRYPIL---MRKVEQIVDIPL 87
           R   LGQ  F+        L  G    AY    +DY  RDR+PI+   +    Q VD  +
Sbjct: 246 RANALGQYLFVNGRPVRDKLILGAVRAAY----ADYLPRDRHPIVALFVTLDPQEVDANV 301

Query: 88  LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147
              + E+++     +R  +     +    L         ++          R+ +  SG 
Sbjct: 302 HPAKTEVRFRNAGLVRALIVHALKEG---LAREGRRTAANTNGAAITTAFHREDLPRSGY 358

Query: 148 PVSSISERIYDADYGMDV---DTIRLSYFASKPSAGKCG 183
              S     +              + ++ A  PSA   G
Sbjct: 359 DWRSSPAAPFAPRASAMAFAEAP-QAAFDAYTPSADARG 396


>gi|328907820|gb|EGG27583.1| putative type III restriction enzyme [Propionibacterium sp. P08]
          Length = 318

 Score = 35.7 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162
             F+E  +      + ++ P  TV + +++       + I  S +P   ++ + Y A   
Sbjct: 15  AAFIEYLRRQGVGNVVIVTPGKTVQAKTVQNFALGEPRYIAGSSVPPEVVTPQDYSAWIA 74

Query: 163 MDVDTIRLS 171
                  LS
Sbjct: 75  RQNGAEILS 83


>gi|116054370|ref|YP_788815.1| putative phage-related protein, tail component [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115589591|gb|ABJ15606.1| putative phage-related protein, tail component [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 1219

 Score = 35.7 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823


>gi|295677420|ref|YP_003605944.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1002]
 gi|295437263|gb|ADG16433.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1002]
          Length = 345

 Score = 35.7 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 93  EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI--IISSGIPVS 150
            +  P               + ++L  L  +  +++ + R +V  I ++    +SG+   
Sbjct: 77  HLAPPQKSGDDD------RRTRALLATLGAAGRMNACAARSSVAPIARLRRARASGLGAE 130

Query: 151 SISERIYDADYGMDV-DTIRLSYFASKPSAGKC-GFWPEDMLGNAKGN 196
           + +               +R+ Y ++    G C G W ++       N
Sbjct: 131 TPAIVPDGVRRTGASRAPVRIVYASTTGVYGDCRGAWIDETRATQPAN 178


>gi|170747493|ref|YP_001753753.1| acyl-CoA dehydrogenase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654015|gb|ACB23070.1| acyl-CoA dehydrogenase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 384

 Score = 35.3 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 17/120 (14%)

Query: 87  LLAGRGEIK-----YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI-----RRAVK 136
           L+AG   +            +       +      +     S   ++ +         V 
Sbjct: 115 LVAGDLRLTLAHTERQSRYDLADVATAARRSGDGFVLSGAKSVVPNADAAGLMVVSARVS 174

Query: 137 DIRKIIISSG---IP--VSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLG 191
             R+     G   +P   + ++   Y    G     +  S+   +  A      PED L 
Sbjct: 175 GERRDPRGLGLFLVPTDAAGVAVEAYPTQDGGRAAEV--SFSEVQIPADAALGDPEDGLP 232


>gi|153005408|ref|YP_001379733.1| hypothetical protein Anae109_2548 [Anaeromyxobacter sp. Fw109-5]
 gi|152028981|gb|ABS26749.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. Fw109-5]
          Length = 759

 Score = 35.3 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 59  LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118
           L +Y  G D     P+   +  +   +P  AGR ++   +     G     +   A  L 
Sbjct: 128 LEWYTFGGDVA---PLDPAEAARG--VPGRAGRTDVLGALEAVASGAGGSTRRL-AGALV 181

Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLS 171
           +       ++A       + R    + G+PV++++          D+   R++
Sbjct: 182 VS--DGADNAALAEGLGPEARAKARALGVPVNAVAVGR---SAPRDLAVERVA 229


>gi|227820509|ref|YP_002824480.1| hypothetical protein NGR_b22820 [Sinorhizobium fredii NGR234]
 gi|227339508|gb|ACP23727.1| hypothetical protein possibly linked to type III secretion
           [Sinorhizobium fredii NGR234]
          Length = 143

 Score = 35.3 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 20/113 (17%)

Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV---DT------IRLSYFASKPS 178
           S         I  ++I +G   S    + Y  +Y               +R  Y  ++  
Sbjct: 7   SGGAMARATLIAALLIPAGCSGSH--PQPYSPNYSYLSMHGAPPAKGGLVRKGYDTTETQ 64

Query: 179 A---GKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP 228
                 C      +  +      +   GCA   NL     +   L   R + P
Sbjct: 65  TLVPDAC------ITPDTADQPLYLPSGCANNLNLQLMAADQRHLLKGREMGP 111


>gi|326776423|ref|ZP_08235688.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656756|gb|EGE41602.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 318

 Score = 35.3 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 64  EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123
           E  D R R+P    +V    + P++AG   +      T+      +         + +P 
Sbjct: 224 EPEDLRARHPRFTAEVMAA-NQPVVAGLRRVAERRGATVAQVALAWVLR-QGPHVVPVPG 281

Query: 124 PTV------SSASIRRAVKDIRKIIISSGIPVSS 151
                    ++ + R  + D R +    G+P + 
Sbjct: 282 AKRERWAVENAGAARVVLDD-RDLAEIDGLPAAR 314


>gi|320334356|ref|YP_004171067.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Deinococcus
           maricopensis DSM 21211]
 gi|319755645|gb|ADV67402.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Deinococcus
           maricopensis DSM 21211]
          Length = 409

 Score = 35.3 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 60/188 (31%)

Query: 65  GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124
           GSD    +PI+++ +             E        +           + ++ +     
Sbjct: 18  GSD----HPIVVQSMTNT-----DTANAEATAIQVAQLA-------RAGSEIVRV----- 56

Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYD--------ADYGMDVDTIRLSYFASK 176
           TV++ +   A+  + + +   GI V  + +  Y+         +    +   R++     
Sbjct: 57  TVNNKAAAAAIPQVVQRLADVGIQVPIVGDFHYNGHILLREFPETARLLAKYRIN----- 111

Query: 177 PSAGKCGFWPEDMLGNAKGNRNWT-----------------NYGCAYQNNLAAQVVNPLD 219
                    P ++    + ++N+                  N+G   Q  LA  +     
Sbjct: 112 ---------PGNVGAGGQHDKNFATMIEVAREFDKPVRIGVNWGSLDQQVLARMMDENAR 162

Query: 220 LFSPRMVT 227
             +PR  T
Sbjct: 163 AAAPRGGT 170


>gi|311260757|ref|XP_003128533.1| PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4
            [Sus scrofa]
          Length = 2311

 Score = 35.3 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 87   LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG 146
            +   R   +      +  F ++   D    L +  P  +    +      +    + + G
Sbjct: 2084 VRVPRARTEPRGGQLVEQFTQQDLEDGRLGLEVGRPEGSPPGPAGDSLTLE----LWARG 2139

Query: 147  IPVS----SISERIYDADYGMDVDTIRL 170
            +P +      +   Y+A     V  + L
Sbjct: 2140 VPPAVASLDFATEPYNAARPYSVALLSL 2167


>gi|194039704|ref|XP_001927173.1| PREDICTED: chondroitin sulfate proteoglycan 4 [Sus scrofa]
          Length = 2290

 Score = 35.3 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 87   LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG 146
            +   R   +      +  F ++   D    L +  P  +    +      +    + + G
Sbjct: 2063 VRVPRARTEPRGGQLVEQFTQQDLEDGRLGLEVGRPEGSPPGPAGDSLTLE----LWARG 2118

Query: 147  IPVS----SISERIYDADYGMDVDTIRL 170
            +P +      +   Y+A     V  + L
Sbjct: 2119 VPPAVASLDFATEPYNAARPYSVALLSL 2146


>gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 1051

 Score = 35.3 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 99  HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158
            D +  F   Y  D+   L L +P  T  +    RA  D+++ +   G     +S   + 
Sbjct: 192 RDDVP-FALVYLLDADGDLRLAVPHGTAPAR--IRAGGDLQRSMTGGGSAP-ELSGEPFG 247

Query: 159 ADYGMDV 165
           A      
Sbjct: 248 ASGPAVA 254


>gi|310791207|gb|EFQ26736.1| hypothetical protein GLRG_02556 [Glomerella graminicola M1.001]
          Length = 443

 Score = 35.3 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 12/128 (9%)

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           Y   GS Y  + P+   +  Q        G   +  P +   + F   Y         + 
Sbjct: 147 YAPRGSTYEQQSPMSYSRTSQS----PATGGEGLPAPPYGQHQSFQSGYSAGGTGSTPVS 202

Query: 121 IPSPTVSSASIRRAVKDIR---KIIISSGIPVSSISERIYDADY-----GMDVDTIRLSY 172
           +PS    +              +     G+P    +                    +  +
Sbjct: 203 LPSQGPPTPQAGILGSQASVSTQPSTPGGVPSHVDTYTQSRPPATPGYYSTSSAPQQSPF 262

Query: 173 FASKPSAG 180
            + + ++ 
Sbjct: 263 PSFQHTSP 270


>gi|111219887|ref|YP_710681.1| ABC transporter ATP-binding protein [Frankia alni ACN14a]
 gi|111147419|emb|CAJ59069.1| Putative ABC transporter ATP-binding protein (partial) [Frankia
           alni ACN14a]
          Length = 600

 Score = 35.3 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 80  EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139
               D PL      +       +         D + VL L  P+  +   +    ++ +R
Sbjct: 489 PDGYDTPLGQSGRRLSGGQRRRVT-LARGLLRD-SPVLVLDEPTAGLDDTAAEPLLRTLR 546

Query: 140 KIIISSGI 147
           ++     +
Sbjct: 547 RLAADRTV 554


>gi|221069204|ref|ZP_03545309.1| rare lipoprotein A [Comamonas testosteroni KF-1]
 gi|220714227|gb|EED69595.1| rare lipoprotein A [Comamonas testosteroni KF-1]
          Length = 247

 Score = 35.3 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           Y D+G   +   P      ++  D+P  + + E+  P      G    Y           
Sbjct: 67  YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 122

Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
                ++   +  + +    ++ + S +   S+  R    +        R+
Sbjct: 123 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 170


>gi|209547632|ref|YP_002279549.1| phospholipid/glycerol acyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533388|gb|ACI53323.1| phospholipid/glycerol acyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 265

 Score = 35.3 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + ++           + I G        +   + +L P  T S  +    VK       +
Sbjct: 112 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGTTSDGNRLLEVKSSLFGAAA 165

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
             +P S            + V  + ++Y      A          WP D+
Sbjct: 166 MAVPAS--------PTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 207


>gi|299529490|ref|ZP_07042927.1| rare lipoprotein A [Comamonas testosteroni S44]
 gi|298722353|gb|EFI63273.1| rare lipoprotein A [Comamonas testosteroni S44]
          Length = 225

 Score = 35.3 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           Y D+G   +   P      ++  D+P  + + E+  P      G    Y           
Sbjct: 45  YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 100

Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
                ++   +  + +    ++ + S +   S+  R    +        R+
Sbjct: 101 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 148


>gi|317402532|gb|EFV83099.1| transcriptional regulatory protein [Achromobacter xylosoxidans C54]
          Length = 295

 Score = 35.3 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 39  LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP---ILMRK-VEQIVDIPLLAGRGEI 94
           LR L  G L   L   G+S L +    + +R RYP   I + +     ++  ++AG  E+
Sbjct: 85  LRGLKRGVLRLGLPPLGSSTL-FAPMFARFRSRYPHIEISLLEHGGHRLEEMVMAGGIEL 143

Query: 95  KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK---IIISSGIPVSS 151
              +      F   ++  +   L  L+P+    + +    +  +R    I+  +G  ++ 
Sbjct: 144 AASLRPDSDNF--DWQPVAREPLVALLPADHPHARAATVGLDQLRDSPFILFETGFALNR 201

Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGK 181
           I +    A              A    +G+
Sbjct: 202 IIQE---ACRRAGFAP------AIAARSGQ 222


>gi|328887005|emb|CCA60244.1| putative nucleoside-diphosphate-sugar epimerase [Streptomyces
           venezuelae ATCC 10712]
          Length = 549

 Score = 35.3 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 73  PILMRKVEQIVDIP------LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL---LIPS 123
           P  +    + VD+       L AGRG  ++      + F  + +      +     L P 
Sbjct: 67  PETLASAFRDVDVAYYLVHALGAGRG-FEHTDRTAAQNFAREARAAGVGRIVYLGGLTPR 125

Query: 124 PTVSSASIR--RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169
                      R+  ++ +I++ SG+P + +   +         + +R
Sbjct: 126 GVPDRELSPHLRSRAEVGRILLESGVPTTVLRAAVIIGSGSASFEMLR 173


>gi|255726752|ref|XP_002548302.1| hypothetical protein CTRG_02599 [Candida tropicalis MYA-3404]
 gi|240134226|gb|EER33781.1| hypothetical protein CTRG_02599 [Candida tropicalis MYA-3404]
          Length = 468

 Score = 35.3 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 63  DEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95
           DE  DY   +PI +   + IVD+        + 
Sbjct: 338 DESLDYLQHHPIELDSQDPIVDVFTGIPDSTLT 370


>gi|9309365|dbj|BAB03218.1| tail formation protein [Pseudomonas aeruginosa]
          Length = 628

 Score = 35.3 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 171 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 229

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 230 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 272


>gi|256372783|ref|YP_003110607.1| glucose inhibited division protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009367|gb|ACU54934.1| glucose inhibited division protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 218

 Score = 35.3 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 18/143 (12%)

Query: 67  DYRDRYPILMRKVEQIVD----IPLLAGRGE-IKYPIHDTIRGFLEKYKNDSASVLFLLI 121
           D R R    + +  + ++    + + A RGE +        R      +   A  +   I
Sbjct: 70  DARQRRAAFLTEAVRALNWSARVRIAAERGEVLARSKEIRERADAVVARGFGAPPVTAEI 129

Query: 122 PSP-----------TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
            S                 + RR      + +   G+ V+ +            V  +  
Sbjct: 130 GSGFVRVGGVIVVSDPPEGAGRRWSAS--EQLARLGLVVAEVVVGPPHFTVLRKVAPLAG 187

Query: 171 SYFASKPSAGKCGFWPEDMLGNA 193
            Y        +   W E+     
Sbjct: 188 QYPRRSGIPERRPLWSEERSSTT 210


>gi|254243718|ref|ZP_04937040.1| hypothetical protein PA2G_04544 [Pseudomonas aeruginosa 2192]
 gi|126197096|gb|EAZ61159.1| hypothetical protein PA2G_04544 [Pseudomonas aeruginosa 2192]
          Length = 1204

 Score = 35.3 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823


>gi|313680394|ref|YP_004058133.1| carbohydrate kinase, yjef related protein [Oceanithermus profundus
           DSM 14977]
 gi|313153109|gb|ADR36960.1| carbohydrate kinase, YjeF related protein [Oceanithermus profundus
           DSM 14977]
          Length = 486

 Score = 35.3 bits (80), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 76  MRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAV 135
           +R+ + +VD     G   +  P+        E+       V+ + +PS    +  +R  +
Sbjct: 108 LREADVVVDALFGTG---LTRPLEGAWAELAERINAADRPVVAVDVPSGLPYAPHVRADL 164

Query: 136 KDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170
                 +  +G+    +      A   + +  I L
Sbjct: 165 -----TVALAGLKPDHVFYPGRSACGRIQLAPIGL 194


>gi|152985256|ref|YP_001346180.1| carbohydrate-binding family V/XII protein [Pseudomonas aeruginosa
           PA7]
 gi|150960414|gb|ABR82439.1| carbohydrate-binding family V/XII [Pseudomonas aeruginosa PA7]
          Length = 1221

 Score = 35.3 bits (80), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823


>gi|107099611|ref|ZP_01363529.1| hypothetical protein PaerPA_01000625 [Pseudomonas aeruginosa PACS2]
          Length = 1204

 Score = 34.9 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163
              Y    A    + +     +S +   A  +I++     G      ++    Y      
Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780

Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201
            V  I    RL++       +G  G W   + G +  + +  N
Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823


>gi|257069010|ref|YP_003155265.1| 3-isopropylmalate dehydratase, large subunit [Brachybacterium
           faecium DSM 4810]
 gi|256559828|gb|ACU85675.1| 3-isopropylmalate dehydratase, large subunit [Brachybacterium
           faecium DSM 4810]
          Length = 479

 Score = 34.9 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/111 (8%), Positives = 34/111 (30%), Gaps = 17/111 (15%)

Query: 69  RDRYPILMRKVEQIVDIPLLAGRGEIKYPIHD---TIRGFLEKYKNDSASVLFLLIP-SP 124
           R ++P +     +++ +P  + R  ++            F  +++    S+   + P   
Sbjct: 366 RTKHPDV-----RVLVVP-GSARVRLQAEQEGLDEIFLAFGAEWRQAGCSMCLGMNPDQL 419

Query: 125 TVSSASIRRAVKDIRKIIISSG-------IPVSSISERIYDADYGMDVDTI 168
                +   + ++        G       +  ++ + R   +        +
Sbjct: 420 APGERAASTSNRNFEGRQGKGGRTHLVSPVVAAATAVRGTLSSPSDLGAPV 470


>gi|325921222|ref|ZP_08183083.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865]
 gi|325548285|gb|EGD19278.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865]
          Length = 433

 Score = 34.9 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 73  PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT-----VS 127
           P+L+   +Q  DI +  G   + + I   +R +++     +  +L  ++PS        +
Sbjct: 289 PVLVELGQQAPDIAVAVG---LTHDIRADVRTYVDSNLPSAGRILNCMLPSGAGPASVRN 345

Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVD 166
            A        + + +  + +P  + +  ++ A       
Sbjct: 346 RAHAALLAHQLAQAVSETRVPGVARTVHLFMAAPNGFFS 384


>gi|332820870|ref|XP_001175202.2| PREDICTED: sodium-dependent dopamine transporter [Pan troglodytes]
          Length = 641

 Score = 34.9 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 47  LFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRG--EIKYPIHD--TI 102
           LF +L+     A  Y + G     R+P L+R+ E++   P         +         +
Sbjct: 485 LFGVLIEAIGVAWFYGESGGRQPSRHP-LLRRGERLGTGPFDGISEVLSLDGSQKTHTVV 543

Query: 103 RGFLEKYKNDSASVLFLLIP-SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161
           RG    + + ++S+L   +P SP++ + +  ++  D ++  +  G      +   Y A  
Sbjct: 544 RGVHSGWASSASSMLEAPVPSSPSLLTRAPEQSGPDDQRAALERGAAPGPFASSAYLASS 603


>gi|255065363|ref|ZP_05317218.1| putative SanA protein [Neisseria sicca ATCC 29256]
 gi|255050188|gb|EET45652.1| putative SanA protein [Neisseria sicca ATCC 29256]
          Length = 224

 Score = 34.9 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 16  FKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRY--P 73
           F  L N R+L+   ++ ++  F +R      +F L+LF+  + L  +    D++      
Sbjct: 3   FVKLRNNRNLLIQPRSNYFHLFRIRMFKKALVFILVLFFTAALLPLWIMWRDFQVSRLDA 62

Query: 74  ILMRKVEQIVDIPLLAGRG-EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132
             +R  +  V +   +  G  +   +   +   +E Y+   A  +  L+ S  + S   +
Sbjct: 63  DTVRPADAAVVLSTRSYEGGRLNPCLVARVEAAVELYR---AGKVKKLVMSGGL-SRDFQ 118

Query: 133 RAVKDIRKIIISSGIPVSSIS 153
            A  +++ I    G+    I 
Sbjct: 119 SASGNMQAIAEKMGVSKEDII 139


>gi|218458829|ref|ZP_03498920.1| phospholipid/glycerol acyltransferase [Rhizobium etli Kim 5]
          Length = 213

 Score = 34.9 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + ++           + I G        +   + +L P  T S  +    VK       +
Sbjct: 73  VFVVREERRKTGHQANEIAG------RMADGEIIVLFPEGTTSDGNRLLEVKSSLFGAAA 126

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
             +P S            + V  + ++Y      A          WP D+
Sbjct: 127 MAVPAS--------PTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 168


>gi|86747626|ref|YP_484122.1| hypothetical protein RPB_0500 [Rhodopseudomonas palustris HaA2]
 gi|86570654|gb|ABD05211.1| hypothetical protein RPB_0500 [Rhodopseudomonas palustris HaA2]
          Length = 293

 Score = 34.9 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%)

Query: 68  YRDRYPI----LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123
           +R+ + I    +        D+P++   GE +      +  F +       S+L + +P+
Sbjct: 71  WREGHAIEGCFVASGAPASDDVPVILCVGESRLSKEQLLAAFAQSAHESGMSLLGIDLPA 130

Query: 124 P------TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177
           P         +      V  I  +   +G+    I+     +   M    + L       
Sbjct: 131 PIRSLEAEPPATPETAIVAAIDYLHERAGVDAERIAVVADGSPSSMVARGVALD-GRVAA 189

Query: 178 SAGKCGFW 185
           +    G W
Sbjct: 190 AVCDAGVW 197


>gi|86356034|ref|YP_467926.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase
           (phospholipid/glycerol acyltransferase) protein
           [Rhizobium etli CFN 42]
 gi|86280136|gb|ABC89199.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase
           (phospholipid/glycerol acyltransferase) protein
           [Rhizobium etli CFN 42]
          Length = 244

 Score = 34.9 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 85  IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144
           + ++           + I G        +   + +L P  T S  +    VK       +
Sbjct: 91  VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGTTSDGNRLLEVKSSLFGAAA 144

Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189
             +P S            + V  + ++Y      A          WP D+
Sbjct: 145 MAVPAS--------PTGTVVVQPVAIAYTRVHGIAMGRYHRPLAAWPGDI 186


>gi|103486519|ref|YP_616080.1| peptidyl-arginine deiminase [Sphingopyxis alaskensis RB2256]
 gi|98976596|gb|ABF52747.1| Porphyromonas-type peptidyl-arginine deiminase [Sphingopyxis
           alaskensis RB2256]
          Length = 327

 Score = 34.9 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 22/85 (25%), Gaps = 3/85 (3%)

Query: 75  LMRKVEQIVDIPLLAGRGEIKYPIHDTIRG--FLEKYKNDSASVLFLLIPS-PTVSSASI 131
           +                 ++  P    + G      Y N       +++P+    +  + 
Sbjct: 231 VYADARARTVAFGGVEIVDLPSPGRIELNGEIAAASYMNFYIGNSTVVVPTYGVANDQAA 290

Query: 132 RRAVKDIRKIIISSGIPVSSISERI 156
              +  +     + G+P   I    
Sbjct: 291 VDTLAALFPDRRAVGVPARGIIVGG 315


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.148    0.472 

Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,730,075,644
Number of Sequences: 14124377
Number of extensions: 128534204
Number of successful extensions: 587114
Number of sequences better than 10.0: 420
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 586714
Number of HSP's gapped (non-prelim): 492
length of query: 243
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 108
effective length of database: 2,936,002,735
effective search space: 317088295380
effective search space used: 317088295380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 79 (34.9 bits)