BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] (243 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] gi|254547836|gb|ACT57199.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 243/243 (100%), Positives = 243/243 (100%) Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA Sbjct: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60 Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL Sbjct: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG Sbjct: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180 Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR Sbjct: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 Query: 241 YRQ 243 YRQ Sbjct: 241 YRQ 243 >gi|86748906|ref|YP_485402.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2] gi|86571934|gb|ABD06491.1| Type IV pili component-like [Rhodopseudomonas palustris HaA2] Length = 242 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +++ ++ V + + GRG + + F +++ + + +PS T Sbjct: 44 NDYRQRHPIAIQEADRSVVVFVGNGRGGLTATQRADVAAFGKEWLREGTGSIIAEVPSGT 103 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + +++I+ ++ S G+P + + Y IRL Y AG CG W Sbjct: 104 PNARAASDTMREIQSLLTSGGVPARGVIVKPYQPADPRSFAAIRLLYPKVAAVAGPCGLW 163 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + K N+ + N+GCA Q NLAA V NP DL PR TP +R + + Sbjct: 164 PEDIGPSIKNKGYLDNKPYWNFGCANQRNLAAMVENPSDLVQPRPETPAYTARRGVTFET 223 Query: 241 YR 242 YR Sbjct: 224 YR 225 >gi|75674498|ref|YP_316919.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255] gi|74419368|gb|ABA03567.1| pilus assembly protein CpaD [Nitrobacter winogradskyi Nb-255] Length = 246 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI +++ ++ V+I + RG + P + G + + + +P+ T Sbjct: 44 DYRLRHPIAIQEADRTVNIFIGNTRGGLTAPQRADVVGLASVWLREGTGAIVAEVPTGTG 103 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + +++R ++ ++G+P I R Y TIRL+Y AG CG WP Sbjct: 104 NARAAADSFREVRSLLAAAGVPPRGIIVRHYHPADPRLFATIRLTYPRIAAVAGPCGVWP 163 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ + K N+ + N+GCA Q NLA+ + NP DL PR TP +R +S ++Y Sbjct: 164 DDIGPSVKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPAYTARRTQSFEKY 223 Query: 242 RQ 243 R+ Sbjct: 224 RK 225 >gi|92116012|ref|YP_575741.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14] gi|91798906|gb|ABE61281.1| pilus assembly protein CpaD [Nitrobacter hamburgensis X14] Length = 246 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 5/183 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +++ + V+I + RG + + G + + + P T Sbjct: 43 NDYRLRHPIAIQEANRTVNIFVGNTRGGLSASQRADVVGLASVWLREGTGAIVAEAPMGT 102 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + +++++R ++ ++G+P I R Y TIRL+Y AG CG W Sbjct: 103 SNARAAADSLREVRSLLTAAGVPPRGIIVRHYHPADPRLFATIRLTYPQIAAVAGPCGVW 162 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + K N+ + N+GCA Q NLAA V NP DL PR TP +R ++ + Sbjct: 163 PEDLGPSIKNKGYLDNKPYWNFGCASQRNLAAMVDNPSDLVQPRPETPTYTARRTYALDK 222 Query: 241 YRQ 243 YRQ Sbjct: 223 YRQ 225 >gi|91977986|ref|YP_570645.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5] gi|91684442|gb|ABE40744.1| Type IV pili component-like [Rhodopseudomonas palustris BisB5] Length = 243 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +++ + V + + GRG + + F + + + + +P+ T Sbjct: 45 TDYRQRHPIAIQEGDHTVVVFVGNGRGGLTTTQRADVAAFGQGWLREGTGSIIAEVPADT 104 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + +++I+ ++ + G+P + + Y IRL Y AG CG W Sbjct: 105 PNARAAGETLREIQSLLAAGGVPQRGVIVKPYRPTDPRAFAAIRLIYPKVSAVAGPCGLW 164 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + K N+ + N+GCAYQ NLAA V NP DL PR TPP A +R + + Sbjct: 165 PEDIGPSIKNKGYLDNKPYWNFGCAYQRNLAAMVENPSDLVQPRPETPPYAARRATTFEA 224 Query: 241 YR 242 YR Sbjct: 225 YR 226 >gi|90425198|ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18] gi|90107212|gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18] Length = 246 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI +++ +Q + I GRG + + + + + + + +P+ T Sbjct: 44 DYRQRHPIAIQEADQTLIIFAGTGRGGLTGAQRADVASLAQTWLREGTGPIVIDLPTHTP 103 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + ++++IR ++ + G+P ++++ R Y IR++Y +AG CG WP Sbjct: 104 NARAAADSLREIRALLAAQGLPPNAVTVRDYQPRDTRQFAAIRVNYPRLTATAGPCGLWP 163 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ ++K N+ + N GCA Q NLAA V NP DL PR TP +R S ++Y Sbjct: 164 DDLGSSSKNHDYFENKPYWNLGCASQRNLAAMVDNPADLVQPRGETPAYTARRTNSFEKY 223 Query: 242 RQ 243 R+ Sbjct: 224 RK 225 >gi|85713506|ref|ZP_01044496.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A] gi|85699410|gb|EAQ37277.1| pilus assembly protein CpaD [Nitrobacter sp. Nb-311A] Length = 245 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 5/183 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +++ ++ V+I + RG + + G + + + +P+ T Sbjct: 42 NDYRLRHPIAIQEADRTVNIFVGNTRGGLTAAQRADVIGLASVWLREGTGAIIAEVPAET 101 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + + K++R ++ ++G+P I R Y+ TIRL+Y AG CG W Sbjct: 102 RNARAAASSFKEVRSLLTAAGVPPRGIIVRHYNPADPRLFATIRLTYPRIAAVAGPCGVW 161 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 P+D+ + K N+ + N+GCA Q NLA+ + NP DL PR TPP +R + ++ Sbjct: 162 PDDLGPSIKNRGYLDNKPYWNFGCATQRNLASMIDNPSDLVQPRPETPPYTARRTEGFEK 221 Query: 241 YRQ 243 YR+ Sbjct: 222 YRK 224 >gi|146338122|ref|YP_001203170.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278] gi|146190928|emb|CAL74933.1| Putative pilus assembly protein cpaD; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 246 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI +++ + + + GRG + + G + + + +PS T Sbjct: 44 DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMGLAQSWMRQGTGAIVADVPSGTP 103 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG WP Sbjct: 104 NARAAADSMREIQSLFSAAGVPPHGVTVRNYQPKDPRQMAAIRLSYPKLSATAGPCGLWP 163 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ + K N+ N+GCAYQ N+AA V NP DL PR TP +R ++Y Sbjct: 164 DDLGPSVKNKNWFDNKPDWNFGCAYQRNMAAMVDNPADLVQPRPETPSYTTRRTALFEKY 223 Query: 242 RQ 243 R+ Sbjct: 224 RK 225 >gi|299132287|ref|ZP_07025482.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2] gi|298592424|gb|EFI52624.1| pilus biogenesis lipoprotein CpaD [Afipia sp. 1NLS2] Length = 246 Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 5/181 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++++ + +I + RG + I G + + ++ + + +P+ T Sbjct: 44 DYRLRHPIVIQEASKTTEIFVGHARGGLTTAQRADIVGLSQAWLSEGTGAITIDVPTGTP 103 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + V+DI+ I+ ++GIP I Y + +R+ Y AG CG WP Sbjct: 104 NAQAASVTVRDIQNILAAAGIPPKGIRVMPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 163 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 ED+ + K NR++ N+GCAYQ N+AA V NP DL PR TPP++ +R ++ +Y Sbjct: 164 EDLGPSVKNKSYFENRSYQNFGCAYQRNMAAMVANPADLVQPRAETPPNSARRTEAFAKY 223 Query: 242 R 242 R Sbjct: 224 R 224 >gi|39936741|ref|NP_949017.1| pilus assembly protein cpaD [Rhodopseudomonas palustris CGA009] gi|192292567|ref|YP_001993172.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris TIE-1] gi|39650597|emb|CAE29120.1| possible pilus assembly protein cpaD [Rhodopseudomonas palustris CGA009] gi|192286316|gb|ACF02697.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhodopseudomonas palustris TIE-1] Length = 242 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +R+ ++ V++ + GRG + + + + + + +PS T Sbjct: 44 TDYRQRHPIAIREADRTVEVFVGNGRGGLTPVQRAEVAELGQTWLREGTGAIIAEVPSDT 103 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + +++I+ ++ ++G+P ++ + Y TIRL Y AG CG W Sbjct: 104 PNARAASDTIREIQSVLAANGVPARGVTVKHYRPADPRTFATIRLIYPKVTAVAGPCGLW 163 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + K NR + N GCA Q NLAA V NP DL PR TPP +R + Sbjct: 164 PEDLGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPSDLVQPRPETPPYTARRAVTYDT 223 Query: 241 YR 242 YR Sbjct: 224 YR 225 >gi|148258236|ref|YP_001242821.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1] gi|146410409|gb|ABQ38915.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1] Length = 244 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI +++ + + + GRG + + + + + +P+ T Sbjct: 42 DYRLRHPIAVQEAPDSLVVFVGQGRGGLTAEQRAEVMALAQSWLRQGTGAISADVPTGTP 101 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + ++++I+ + ++G+P ++ R Y + IRLSY +AG CG WP Sbjct: 102 NARAAGDSMREIQSLFAAAGVPPHGLTVRNYQPKDPRQMAAIRLSYPKMSATAGPCGVWP 161 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ K N+ N+GCAYQ N+AA V NP DL PR TP +R +Y Sbjct: 162 DDLGPTIKNKNWFENKPDWNFGCAYQRNMAAMVDNPADLVQPRAETPSYTTRRTALFDKY 221 Query: 242 RQ 243 R+ Sbjct: 222 RK 223 >gi|209886531|ref|YP_002290388.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5] gi|209874727|gb|ACI94523.1| pilus assembly protein CpaD [Oligotropha carboxidovorans OM5] Length = 247 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 5/181 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++++ + +I + RG + I G + + ++ + + P+ T Sbjct: 45 DYRARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAITIDTPTGTP 104 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + V+DI+ +++++GIP + + Y + +R+ Y AG CG WP Sbjct: 105 NAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNDPRQFAPVRVRYARIIADAGPCGLWP 164 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 ED+ + K NR + N+GCAYQ N+AA V NP DL PR +P ++ +R ++ +Y Sbjct: 165 EDLGPSVKNKSYFENRPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRSQAFTKY 224 Query: 242 R 242 R Sbjct: 225 R 225 >gi|316933038|ref|YP_004108020.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris DX-1] gi|315600752|gb|ADU43287.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhodopseudomonas palustris DX-1] Length = 242 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 5/182 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +R+ ++ V++ + GRG + + + + + + +PS T Sbjct: 44 TDYRQRHPIAIREADRTVEVFVGNGRGGLTALQRAEVAELGQAWLREGTGAIIAEVPSDT 103 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++ + +++I+ ++ ++G+P ++ + Y TIRL Y AG CG W Sbjct: 104 PNARAASDTIREIQSVLSANGVPPRGVTVKHYRPADPRTFATIRLIYPKITAVAGPCGLW 163 Query: 186 PEDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + K NR + N GCA Q NLAA V NP DL PR TP +R + Sbjct: 164 PEDIGPSIKNKGYYDNRPYWNLGCANQRNLAAMVENPADLVQPRPETPAYTARRMVTNDV 223 Query: 241 YR 242 YR Sbjct: 224 YR 225 >gi|150398542|ref|YP_001329009.1| pilus biogenesis lipoprotein CpaD [Sinorhizobium medicae WSM419] gi|150030057|gb|ABR62174.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium medicae WSM419] Length = 242 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 107/176 (60%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+ V+ +++P +V Sbjct: 53 DYRTRHPIVLTEGERTIDIPVASGDTRLTQGTRDVIRGFAAEYRNASSGVVQIMLPRGSV 112 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + + K+IR+++ SG+ I E YDA D IRLSY A CG WP Sbjct: 113 NGRAAQILRKEIRRLLAGSGVSPKKIIETSYDASVTGDAAPIRLSYVAITAQTAPCGAWP 172 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R Sbjct: 173 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRRMSPIDAEQRGQVIDSWR 228 >gi|148256958|ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1] gi|146409131|gb|ABQ37637.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1] Length = 247 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DY+ R+PI + + Q + + + +GRG + Y + G ++ + + +P+ T Sbjct: 45 DYKIRHPIAVEEGRQSIVVFVGSGRGGLTYQQRADVAGLARSWQREGTGAIVAEVPADTP 104 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + ++I ++ S G+P SI+ R Y D + +RLSY AG CG WP Sbjct: 105 NARAAADTYREIHAMLTSGGVPSRSITLRHYTPDDPRLLAAVRLSYPKIAAVAGPCGLWP 164 Query: 187 EDMLGNAK-----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ N N+++ N+GCA Q NLAA + NP DL PR +R ++Y Sbjct: 165 DDLGPNIDNPSYSNNQHYHNFGCATQRNLAAMIDNPADLEQPRAEVAAYTPRRSALFEKY 224 Query: 242 RQ 243 R+ Sbjct: 225 RK 226 >gi|146342079|ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS278] gi|146194885|emb|CAL78910.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. ORS278] Length = 256 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DY+ R+PI + + Q + + + +GRG + P + G ++ + + +P+ T Sbjct: 54 DYKMRHPIAIEEGRQSIVVFIGSGRGGLTMPQRADVAGLARSWRREGTGAIVADVPAGTP 113 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + A ++I ++ G+P +I+ R D + IRLSY AG CG W Sbjct: 114 NARAAQDAYREIHAMLTEGGVPSRAITMRHPTPDDPRQLAVIRLSYPKIAAVAGPCGLWQ 173 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ N N+++ N+GCA Q NLAA + NP DL PR T +R ++Y Sbjct: 174 DDLGPNINNPGYSSNQHYQNFGCATQRNLAAMIDNPADLEQPRSETAAYTPRRSALFEKY 233 Query: 242 RQ 243 R+ Sbjct: 234 RK 235 >gi|27376549|ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349690|dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 5/181 (2%) Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVS 127 Y+ R+PI + + + + + + RG + + G + ++ + + PS T + Sbjct: 43 YKQRHPIAIEEQNRSIVVFVGHARGGLTAAQRADVMGLASAWLHEGTGAIHIDAPSGTPN 102 Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187 + + ++++I+ ++ ++G+P I R Y + + IRL+Y AG CG WPE Sbjct: 103 ARPVAESMREIQAMLAAAGVPPRGIIARPYQPEDKRFLPPIRLTYSKIAAVAGPCGLWPE 162 Query: 188 DMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 D+ + K N+ + NYGCAYQ NLAA V NP DL PR TP +R + ++YR Sbjct: 163 DIGPSMKNKGWFENKEYYNYGCAYQRNLAAMVDNPSDLEQPRPETPSYTTRRTAAFEKYR 222 Query: 243 Q 243 + Sbjct: 223 K 223 >gi|222147181|ref|YP_002548138.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734171|gb|ACM35134.1| component of type IV pilus [Agrobacterium vitis S4] Length = 196 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 103/176 (58%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ VE +D+P+ G + + D + GF + Y+N S + +L+P + Sbjct: 9 DYRTRHPIIVTDVEHSLDLPVAQGSSRLTIGMSDAVTGFAQDYRNASTGYVQILVPQGSP 68 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + +R +++S GI I ER Y A D IRLSY A+ AG CG WP Sbjct: 69 NTMAASSIARQVRNLLVSKGIAAPKIVERPYRAGATGDAAPIRLSYVATTAVAGPCGQWP 128 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ + N+NW N+GCA Q NLAAQV +P DL +PR +TP DAE+R I YR Sbjct: 129 EDLSNDTAQNKNWQNFGCASQANLAAQVASPTDLIAPRGMTPIDAERRSTVIDNYR 184 >gi|27375776|ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27348914|dbj|BAC45930.1| pilV [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI +++ ++ + I + RG + + G + + + + +P + Sbjct: 41 TDYRQRHPIAVQEAKKSIVIFVGKARGGLSAAQQSDVAGTARDWVREGTGSVVVDVPIGS 100 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 +S + +IR ++ S G+P +I + Y + + TIRLSY AG CG W Sbjct: 101 ANSRAAATTYHEIRSVLASGGVPSRAIVQHPYRPEDPGLLPTIRLSYSRIAAVAGPCGLW 160 Query: 186 PEDMLGNA-----KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 PED+ + N+ + N GCA Q NLAA + NP DL PR TP +RD + R Sbjct: 161 PEDVGPSILDPGYNENQPYFNLGCASQRNLAAMIDNPADLEQPRAETPVYTARRDIAFDR 220 Query: 241 YRQ 243 YR+ Sbjct: 221 YRK 223 >gi|15963895|ref|NP_384248.1| hypothetical protein SMc04110 [Sinorhizobium meliloti 1021] gi|307315792|ref|ZP_07595306.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium meliloti BL225C] gi|15073070|emb|CAC41529.1| Pilus assembly protein cpaD [Sinorhizobium meliloti 1021] gi|306898560|gb|EFN29233.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium meliloti BL225C] Length = 226 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 109/176 (61%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+SV+ +++P +V Sbjct: 37 DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + + KDIR+++ +SG+ + E YDA D IRLSY A CG WP Sbjct: 97 NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R Sbjct: 157 EDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212 >gi|115525750|ref|YP_782661.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris BisA53] gi|115519697|gb|ABJ07681.1| pilus biogenesis lipoprotein CpaD [Rhodopseudomonas palustris BisA53] Length = 249 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 5/182 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI +++ +Q ++I + GRG + P I + + +++ + + P+ T Sbjct: 47 DYRQRHPIAIQEADQTLNIFVGTGRGGLTGPQRAAIAAVAQSWLSEATGRIVIDQPAQTP 106 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + +V++IR ++ ++GIP ++++ R Y IR++Y +AG CG WP Sbjct: 107 NARAAADSVREIRALLAAAGIPTNAVAVREYQPSDPRLFAAIRVNYPRLVATAGPCGLWP 166 Query: 187 EDMLGNAKG-----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 +D+ + N+ N+GCA Q NLAA V NP DL PR TP +R + +Y Sbjct: 167 DDLGPSVNNPGYIENKPSYNHGCAVQRNLAAMVENPADLVQPRAETPAYTARRTIAFDKY 226 Query: 242 RQ 243 R+ Sbjct: 227 RK 228 >gi|227823972|ref|YP_002827945.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234] gi|227342974|gb|ACP27192.1| pilus assembly protein CpaD [Sinorhizobium fredii NGR234] Length = 234 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 108/176 (61%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + E+++DIP+ +G + D IRGF +Y+N S V+ +++P + Sbjct: 53 DYRTRHPIVIAEGERVIDIPVASGDRRLTAGTRDVIRGFATEYRNASGGVIQIMLPRGSA 112 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +S + + KDIR+++ +SG+P + E Y+A D IRLSY A CG WP Sbjct: 113 NSHAAQIVRKDIRRLLAASGVPPKRMIETGYEAVSPGDAAPIRLSYVAITAQTAPCGEWP 172 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DA QR + I +R Sbjct: 173 EDLTLNTLQNRNYYNFGCASQSNLAAQIANPTDLIGPRQMSPVDAAQRGEVIDAWR 228 >gi|118589704|ref|ZP_01547109.1| components of type IV pilus [Stappia aggregata IAM 12614] gi|118437790|gb|EAV44426.1| components of type IV pilus [Stappia aggregata IAM 12614] Length = 238 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 93/177 (52%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + + +D+P+ I PI TI F ++ + + +L+PS Sbjct: 43 DYRLMHPIVITEEPETLDLPVGRNTRNINGPIESTIAAFGQQSRQKGNGSVEILVPSGGA 102 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + A++ IR+ + G+ + IS R Y IRLSY + +AG+CG WP Sbjct: 103 NEAAVHSITPKIRQALQQGGVSRNRISTRTYSVGDPGADAPIRLSYARMQATAGECGAWP 162 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 ++ G N N+ N+GCA Q NLAA V NP DL +PR P D +R I++YR+ Sbjct: 163 RNIGGGFGENINYENFGCASQANLAAMVDNPSDLITPRASAPSDQGRRAVVIEKYRK 219 >gi|307320427|ref|ZP_07599844.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium meliloti AK83] gi|306893993|gb|EFN24762.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Sinorhizobium meliloti AK83] Length = 226 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 109/176 (61%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + E+ +DIP+ +G + D IRGF +Y+N S+SV+ +++P +V Sbjct: 37 DYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSV 96 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + + KDIR+++ +SG+ + E YDA D IRLSY A CG WP Sbjct: 97 NGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWP 156 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N NRN+ N+GCA Q+NLAAQ+ NP DL PR ++P DAEQR + I +R Sbjct: 157 EDLALNTLVNRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWR 212 >gi|159184217|ref|NP_353253.2| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|159139546|gb|AAK86038.2| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 193 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 103/176 (58%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS + Sbjct: 9 DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSP 68 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ R K IR + +G+ I E Y A D IRLSY A G+CG WP Sbjct: 69 NSATAARMAKQIRSTLSGAGVAQGKIMETRYAASPNGDSAPIRLSYVAVTAMTGQCGQWP 128 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N N+NW N+GCA Q+NLAAQ+ NP+DL PR ++P DAE+R I YR Sbjct: 129 EDLSDNTFANKNWYNFGCASQSNLAAQIANPMDLVGPRGMSPIDAERRAVVIDTYR 184 >gi|254503403|ref|ZP_05115554.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11] gi|222439474|gb|EEE46153.1| pilus biogenesis lipoprotein CpaD [Labrenzia alexandrii DFL-11] Length = 221 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 98/176 (55%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR ++PI++ + + +D+P+ ++ P+ DTI F + + + +L+P+ Sbjct: 27 DYRYQHPIVVSEAPETLDLPVGKNTRNLRSPVTDTITSFAMDSRRHGSGNVEILVPTGAA 86 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + +++ V DIR + G+ ++ R Y + IRLSY K + G+CG WP Sbjct: 87 NESAVHAVVHDIRGALSRGGVNGKHVTTRTYRSTDSSADAPIRLSYARMKATTGECGAWP 146 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +++ G N N+ N+GCA Q+NLAA V NP DL +PR +TP D +R I++YR Sbjct: 147 KNIGGGIGENTNYYNFGCATQSNLAAIVENPSDLITPRAMTPSDQNRRAVVIEKYR 202 >gi|163757628|ref|ZP_02164717.1| components of type IV pilus [Hoeflea phototrophica DFL-43] gi|162285130|gb|EDQ35412.1| components of type IV pilus [Hoeflea phototrophica DFL-43] Length = 233 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 101/177 (57%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + E+ VDIP+ G E+ + + +RG Y++ ++ + +++P + Sbjct: 49 DYRTNHPIIVAEQERTVDIPVGTGDRELTTSMREIVRGAAHSYRSSASGAVRIMVPVGSA 108 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + KI+ G+P I Y D IR++Y A S KCG WP Sbjct: 109 NAGAASILSGQVAKILQKEGVPRDRILSSPYSVSSPDDAAPIRIAYLAITASTEKCGRWP 168 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 ED+ + N++W N+GCA Q+NLAAQ+ NP DL +PR ++P DAE+R I+ YR+ Sbjct: 169 EDLAADTTENKHWANFGCASQSNLAAQIANPGDLIAPRGMSPIDAERRSTIIETYRE 225 >gi|304392383|ref|ZP_07374324.1| pilus assembly protein [Ahrensia sp. R2A130] gi|303295487|gb|EFL89846.1| pilus assembly protein [Ahrensia sp. R2A130] Length = 227 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 104/178 (58%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 S+Y+ R+PI++ + EQ +DIP+ + + GF KY+ + + ++IP + Sbjct: 35 SNYKTRHPIVIDEKEQTLDIPVGSDTVRLPRAQESATEGFASKYRRSPSGTMTIMIPRHS 94 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 ++++ R + +I+ G+P SSI YDA IR+SY A + S +CG W Sbjct: 95 PNASAARSMSHQVAEILRREGVPPSSIVTTSYDASRHGSAAPIRVSYHAVQASVERCGKW 154 Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 PED+ G N+NW N+GCA QNN+AAQ+ NP DL +PR +T DAE+R+ I+ YR+ Sbjct: 155 PEDLAGPNLDNQNWHNFGCANQNNMAAQIANPSDLVAPRGMTQADAERRNNVIEDYRE 212 >gi|114705455|ref|ZP_01438363.1| pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540240|gb|EAU43360.1| pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 230 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + ++ +DIP++ ++ I F +++ A + +L+P + Sbjct: 38 DYRTRHPIVVSEADEAIDIPVVTSDQKLAMSDSGRIEDFAHRFRRSGADTMTVLVPYGSR 97 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + + ++ +G+ I + Y A + IRL++ G CG WP Sbjct: 98 NAVAASSISHEAIRTLMKAGVRREQIVMQSYAAHDALGPTPIRLTFSTLVAQTGPCGRWP 157 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ + N+N+ N+GCA Q NLAAQ+ +P DL SPR + P D E+RD+ I++YR Sbjct: 158 EDL-NSTHENKNYANFGCATQQNLAAQIADPRDLLSPRGMGPVDGERRDQVIEKYR 212 >gi|209551760|ref|YP_002283677.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537516|gb|ACI57451.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y ++ +++L P + Sbjct: 54 DYRARHPIIVTEAEQTVDIPVASTDRRLTNAQRDLIRGFAANYIARASGPVYVLSPQGSP 113 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + +R + S GI S I Y A D IRLS+ + +CG WP Sbjct: 114 NSAAAYQLRNQVRAELASRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAITTQCGQWP 173 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR Sbjct: 174 KDI-SNDFTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 228 >gi|116249982|ref|YP_765820.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254630|emb|CAK05704.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 250 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPQGSP 121 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + +R + S GI S I Y A D IRLS+ + +CG WP Sbjct: 122 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAVGPGDAAPIRLSFTGTTAVTTQCGQWP 181 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR Sbjct: 182 KDI-SNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 236 >gi|307943146|ref|ZP_07658491.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4] gi|307773942|gb|EFO33158.1| pilus biogenesis lipoprotein CpaD [Roseibium sp. TrichSKD4] Length = 237 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 95/178 (53%) Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124 ++Y+ R+PI++ + +++D+P+ A + P+ T++ F + + +L+PS Sbjct: 40 ATNYQLRHPIVVTEQPEVLDLPIGAHMRNLNGPLRGTVKAFGADSRKKGNGRVEILVPSG 99 Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184 + A++ V IR + + G+ +IS R Y D IRLSY + +AG CG Sbjct: 100 GRNEAAVHALVPQIRSSLKAGGLSGGAISTRSYAVDNPSADAPIRLSYPRIQATAGPCGT 159 Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 W D+ N ++ NYGCA Q+NLAA V NP DL +PR P D +R +++YR Sbjct: 160 WNGDIGRTFDRNVDYENYGCATQSNLAAMVENPSDLLTPRASAPADRMRRANVVEKYR 217 >gi|328545278|ref|YP_004305387.1| Pilus biogenesis lipoprotein CpaD [polymorphum gilvum SL003B-26A1] gi|326415020|gb|ADZ72083.1| Pilus biogenesis lipoprotein CpaD [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 93/177 (52%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI++ + + +D+P+ + + + F + + + + +L+PS Sbjct: 42 NDYRLRHPIVITEQAETLDLPVGQSTRNLNRDFAERVTEFGQASRRNGNGHVEILVPSGA 101 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFW 185 + A++ IR + G+ + +S R Y D IRL+Y K SAG CG W Sbjct: 102 ANEAAVHAVTPRIRSALALGGVSGTHVSTRSYPVDDATAQAPIRLAYTRIKASAGPCGEW 161 Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 P ++ G+ N+++ N+GCA Q NLAA V NP DL PR +TP D +R Q+YR Sbjct: 162 PANIGGSLNANQDYYNFGCATQANLAAMVDNPADLLGPRAMTPADQMRRATVFQKYR 218 >gi|110636322|ref|YP_676530.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium sp. BNC1] gi|110287306|gb|ABG65365.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Chelativorans sp. BNC1] Length = 226 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + EQ++D+P+ + ++ GF+E Y +V+ +L+PS + Sbjct: 37 DYRTNHPIVLSEKEQVLDLPVGVFSYRMTPQQKMSLEGFMEHYGESGKAVVTVLVPSGSP 96 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + R +DI + + G+P + YDA +R+SY + G+CG WP Sbjct: 97 NERAASRLSEDIAQFLYRRGVPKGHLQVLSYDA-PAEQASPVRVSYSVVAATTGQCGRWP 155 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+L N+++ N+GCAYQNNLAAQ+ NP+DL PR TP DAE RD +I RY+ Sbjct: 156 EDLLDTT-ENKHYANFGCAYQNNLAAQIANPMDLLGPRKTTPIDAENRDTAIGRYK 210 >gi|325291658|ref|YP_004277522.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059511|gb|ADY63202.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 252 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI + + E +DIP+ AG + + D +RGF + Y + S ++ + +PS + Sbjct: 68 DYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSA 127 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + + IR + +G+P I E Y A D IRLSY A G+CG WP Sbjct: 128 NSAAASKMARQIRSALSGAGVPSGKIMETRYAASPNGDAAPIRLSYVAVTAMTGQCGQWP 187 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+ N N+NW N+GCA Q+NLAAQV NP+DL PR ++P DAE+R I YR Sbjct: 188 EDLSDNTFANKNWYNFGCASQSNLAAQVANPMDLVGPRGMSPIDAERRAVVIDAYR 243 >gi|315121890|ref|YP_004062379.1| hypothetical protein CKC_00700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495292|gb|ADR51891.1| hypothetical protein CKC_00700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 224 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 141/243 (58%), Positives = 188/243 (77%), Gaps = 23/243 (9%) Query: 1 MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60 MM + MI +FGG+CFK L + FFL Q+ FLLLF G + LA Sbjct: 1 MMRDIMIKEIFGGMCFKRLVS---------------FFLM-----QISFLLLFCGNNVLA 40 Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 +DYRDRYPI+M+KVE+ +DIPLL+GRG++ ++DTI+GF+++YK +S SV+F+L Sbjct: 41 ---NQNDYRDRYPIVMKKVEKSLDIPLLSGRGKLPSDMYDTIKGFIDRYKQNSTSVIFIL 97 Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180 IP+PT+SS +I+ A+K+IR+ IIS+GIP SS+SER YDADY +D+DTIRLSYFAS+PSAG Sbjct: 98 IPTPTISSHAIQDALKNIRRFIISNGIPSSSLSERSYDADYELDIDTIRLSYFASRPSAG 157 Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 KCGFWPED+LG++ N NW+NYGC+YQNNLAAQ+VNP+DLF+PR +TPPDA RD+SI R Sbjct: 158 KCGFWPEDILGSSLENSNWSNYGCSYQNNLAAQIVNPMDLFAPRSMTPPDAVHRDRSIHR 217 Query: 241 YRQ 243 Y++ Sbjct: 218 YQE 220 >gi|13474661|ref|NP_106230.1| pilus assembly protein cpaD [Mesorhizobium loti MAFF303099] gi|14025416|dbj|BAB52016.1| pilus assembly protein; CpaD [Mesorhizobium loti MAFF303099] Length = 251 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + IPS + Sbjct: 61 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTIQIPSGSA 120 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + A +D ++ ++SG+ + I Y A +R+SY A + KCG WP Sbjct: 121 NEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGSSETSAPVRVSYIAVRAQTDKCGRWP 180 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED+L N+++ ++GC+YQNNLAAQ+ NP DL PR T DAE R K I YR Sbjct: 181 EDLLE-TSENKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGKVIDVYR 235 >gi|190889882|ref|YP_001976424.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|190695161|gb|ACE89246.1| pilus assembly protein [Rhizobium etli CIAT 652] Length = 252 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEGSP 121 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + +R + S GI S I Y A D IRLS+ + +CG WP Sbjct: 122 NSAAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR Sbjct: 182 KDI-SNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236 >gi|260461948|ref|ZP_05810193.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium opportunistum WSM2075] gi|259032195|gb|EEW33461.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + IPS + Sbjct: 53 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPALTIQIPSGSA 112 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + R A +D ++ ++SGI + I+ Y A +R+S+ A + KCG WP Sbjct: 113 NEVAARAAGRDFARLAVASGIKRNRIAVVSYQAGSSEASAPVRVSFIAVRAQTDKCGRWP 172 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ED++ ++ N+++ ++GC+YQNNLAAQ+ NP DL PR T DAE R I YR Sbjct: 173 EDLVESS-ENKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGAVIDVYR 227 >gi|86355865|ref|YP_467757.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279967|gb|ABC89030.1| pilus assembly protein [Rhizobium etli CFN 42] Length = 233 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 43 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 102 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + +R + + GI S I Y A D IRLS+ + +CG WP Sbjct: 103 NSAAADQLRNQVRAELTTRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 162 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR Sbjct: 163 KDI-SNDLANQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 217 >gi|222084470|ref|YP_002542999.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721918|gb|ACM25074.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 235 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 105/176 (59%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ E VDIP+ + + DT+RGF++ Y+ + + ++ P + Sbjct: 46 DYRQRHPIVLTDKEHRVDIPVSVSDRRLTSGMRDTVRGFVQDYRAHATGTVEIMTPRESA 105 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + IR+ +++SGIP + I++ Y A D IRL + A+ CG WP Sbjct: 106 NSAAASALRRQIRQELMASGIPSARITDNYYPAGGPGDAAPIRLRFMATAAVTNACGQWP 165 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 D+ NA N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA+QR K I YR Sbjct: 166 ADLADNAFDNQNYYNFGCATQNNLAAQVANPTDLIAPRAMTPIDADQRSKVIDNYR 221 >gi|327194693|gb|EGE61539.1| pilus assembly protein [Rhizobium etli CNPAF512] Length = 252 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 62 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYVSRASGPVYVLSPEDSP 121 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +S + + +R + S GI S I Y A D IRLS+ + +CG WP Sbjct: 122 NSTAAHQLRNQVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWP 181 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR Sbjct: 182 KDI-SNDFANQNYYNFGCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 236 >gi|241207158|ref|YP_002978254.1| pilus biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861048|gb|ACS58715.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 235 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 46 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFATNYISRASGPVYVLSPQGSP 105 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 +SA+ + +R + S GI S I Y A D IRLS+ + +CG WP Sbjct: 106 NSAAAYQLRNQVRAELTSRGIASSKIVNTSYAAAGPGDAAPIRLSFTGTTAVTTQCGQWP 165 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +D+ N N+N+ N+GCA QNNLAAQ+ NP DL +PR +TP DA++R+ +IQ YR Sbjct: 166 KDI-SNDLTNQNYYNFGCASQNNLAAQIANPEDLVAPRGMTPIDAQRRNNAIQEYR 220 >gi|90419765|ref|ZP_01227674.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans SI85-9A1] gi|90335806|gb|EAS49554.1| putative pilus assembly protein cpaD [Aurantimonas manganoxydans SI85-9A1] Length = 244 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + ++ +DIP++ + Y + F ++++ A + +++P+ + Sbjct: 54 DYRTRHPIVVSEDQEAIDIPIVMSDARLSYANRGRVEHFGDRFRASGADSIQVMLPTGSA 113 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + R +I + + I I + Y A IRL+Y G CG WP Sbjct: 114 NQYAAERVSHEIVEALRGRYISRDRIFVQPYSAVGAEGPTPIRLTYATLVAKTGPCGRWP 173 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 +DM + N+N+ N+GCA Q NLAAQ+ +P DL SPR V DA +R + YR+ Sbjct: 174 DDM-TDTSENKNYFNFGCASQQNLAAQIADPRDLLSPRGVDSIDAGRRTTVLDNYRR 229 >gi|319785607|ref|YP_004145083.1| pilus biogenesis lipoprotein CpaD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171495|gb|ADV15033.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 245 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + Q +D+P+ AG + DT+ GFL+ Y +A L + +PS + Sbjct: 55 DYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDRSAAPTLTIQVPSGSA 114 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + + A +D ++ ++SGI + I Y + IR++Y + K KCG WP Sbjct: 115 NEVAATTAARDFARLAVASGIKRNRIVVTSYQSASAEASAPIRVAYISVKAQTDKCGRWP 174 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 ED++ N+++ ++GC+YQNNLAAQ+ NP DL PR D R ++I Y++ Sbjct: 175 EDLME-TSENKHYADFGCSYQNNLAAQMANPADLLGPRKSANIDPANRSQAIDVYQK 230 >gi|153008060|ref|YP_001369275.1| pilus biogenesis lipoprotein CpaD [Ochrobactrum anthropi ATCC 49188] gi|151559948|gb|ABS13446.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum anthropi ATCC 49188] Length = 239 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 97/173 (56%), Gaps = 1/173 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L++L+PS T Sbjct: 42 DYRTNHPITIAEREQVTDIPVAQADQKLSPMQRGIVQGAIANYRRGGSGMLYVLVPSGTS 101 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + A+ R ++ ++ GI ++I+ Y + IR+SY+A CG WP Sbjct: 102 NQAAAYRLSTEVSAMLRRGGIKANNIAIENYPVENPEAAAPIRISYYAMTAGTTPCGRWP 161 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 +D+ + N+++ N+GCA QNNLAAQV NP DL PR+++P D+++ + + Sbjct: 162 DDL-ASTPENKHYANFGCASQNNLAAQVANPADLLGPRVMSPIDSDRTTERLN 213 >gi|188581661|ref|YP_001925106.1| pilus biogenesis lipoprotein CpaD [Methylobacterium populi BJ001] gi|179345159|gb|ACB80571.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylobacterium populi BJ001] Length = 247 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P Sbjct: 42 DVRTRHPIVLADADRSLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILVVELPRGVS 100 Query: 127 S--SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + S+ R +IR++ G+P + I Y +RLS+ + A KCG Sbjct: 101 PGLAGSVERTGAEIRRLAAEMGVPAAGIRVANYPVANPTLASPLRLSFQRMQAKVADKCG 160 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N GCA Q NLAAQV +P+DL R D R K + Sbjct: 161 LWPRDLGVSDLRANWSNEPTWNLGCATQANLAAQVADPIDLVRGRPEGRIDTVLRTKDLG 220 Query: 240 RYRQ 243 + R+ Sbjct: 221 QLRE 224 >gi|23011548|ref|ZP_00051876.1| hypothetical protein Magn03006165 [Magnetospirillum magnetotacticum MS-1] Length = 248 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G + + FL +Y+ +L + +P Sbjct: 43 DVRTRHPIVLADADRTLDVF-PTGVGHLDPRQRADLEAFLVEYRRYGRGLLLVEMPRGVS 101 Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + + + R IR++ G+P Y +RLS+ + A +CG Sbjct: 102 PALAGPVERTGAAIRRLAAEMGVPAGGFRIGDYPIANPALAAPLRLSFQRMQAKVADQCG 161 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N+GCA + N AAQV +P+DL R D +R + I Sbjct: 162 LWPRDLGASDLRADWSNEPTWNFGCATRANFAAQVADPVDLVRGRPEGRIDTIRRTQDIG 221 Query: 240 RYRQ 243 + R+ Sbjct: 222 QLRE 225 >gi|239833236|ref|ZP_04681565.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum intermedium LMG 3301] gi|239825503|gb|EEQ97071.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Ochrobactrum intermedium LMG 3301] Length = 239 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI + + EQ+ DIP+ ++ ++G + Y+ + +L++L+PS Sbjct: 42 DYRTNHPITIAEREQVTDIPIAQADQKLSPMQRGIVQGAIANYRRSGSGMLYVLVPSGAS 101 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + A+ R ++ + SGI ++I+ Y + IR+SY+A CG WP Sbjct: 102 NQAAAYRLSTEVAATLRRSGIKANNIAIENYPVESPDAAAPIRISYYAITAGTTPCGRWP 161 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 +D+ + N+++ N+GC QNNLAAQV NP DL PR +TP D+++ + Sbjct: 162 DDL-ASTPENKHYANFGCVSQNNLAAQVANPADLLGPRTMTPIDSDRATARLN 213 >gi|218530655|ref|YP_002421471.1| pilus biogenesis lipoprotein CpaD [Methylobacterium chloromethanicum CM4] gi|218522958|gb|ACK83543.1| pilus biogenesis lipoprotein CpaD [Methylobacterium chloromethanicum CM4] Length = 248 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P Sbjct: 43 DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101 Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + + + R IR++ G+P + + Y +RLS+ + A KCG Sbjct: 102 PALAGPVERTGASIRRLATEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N GCA Q+N+AAQV +P+DL R D R K + Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221 Query: 240 RYRQ 243 + R+ Sbjct: 222 QLRE 225 >gi|254561622|ref|YP_003068717.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4] gi|254268900|emb|CAX24861.1| pilus assembly protein cpaD [Methylobacterium extorquens DM4] Length = 248 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P Sbjct: 43 DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101 Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + + + R IR++ G+P + + Y +RLS+ + A KCG Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N GCA Q+N+AAQV +P+DL R D R K + Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221 Query: 240 RYRQ 243 + R+ Sbjct: 222 QLRE 225 >gi|163851904|ref|YP_001639947.1| pilus biogenesis lipoprotein CpaD [Methylobacterium extorquens PA1] gi|163663509|gb|ABY30876.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylobacterium extorquens PA1] Length = 248 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P Sbjct: 43 DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLGEYRRYGRGILLVELPRGVS 101 Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + + + R IR++ G+P + + Y +RLS+ + A KCG Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANPTLASPLRLSFQRMQAKVADKCG 161 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N GCA Q+N+AAQV +P+DL R D R K + Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221 Query: 240 RYRQ 243 + R+ Sbjct: 222 QLRE 225 >gi|254473746|ref|ZP_05087141.1| components of type IV pilus [Pseudovibrio sp. JE062] gi|211957132|gb|EEA92337.1| components of type IV pilus [Pseudovibrio sp. JE062] Length = 218 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 1/176 (0%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ +V + DIP+ + + + F ++ D + +L+PS + Sbjct: 21 DYRKRHPIVITEVPENFDIPVSGEARNLNRSLKTAVAAFGQQAIVDGNGFVEVLVPSGSA 80 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 + A++R IR + G+ + I R Y +RLS+ K + CG WP Sbjct: 81 NEAAVRAISPQIRTALKQGGMEANKIVMRSYSVSDMAASAPVRLSFMRIKGAVRDCGNWP 140 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 M+ N N ++ N+GCA Q NLAA V NP DL PR + P D + + + + R Sbjct: 141 TGMVVNH-QNLDYHNFGCASQANLAAVVDNPTDLLRPRTLGPNDPSRTNVVLTKNR 195 >gi|240139027|ref|YP_002963502.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1] gi|240008999|gb|ACS40225.1| pilus assembly protein cpaD [Methylobacterium extorquens AM1] Length = 248 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 D R R+PI++ ++ +D+ G G I I FL +Y+ +L + +P Sbjct: 43 DVRTRHPIVLADADRTLDVF-PTGIGHIDPRQRADIEAFLVEYRRYGRGILLVELPRGVS 101 Query: 127 SSAS--IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCG 183 + + + R IR++ G+P + + Y +RLS+ + A KCG Sbjct: 102 PALAGPVERTGASIRRLAAEMGVPAAGVRVAAYPIANLTLASPLRLSFQRMQAKVADKCG 161 Query: 184 FWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQ 239 WP D+ + N N GCA Q+N+AAQV +P+DL R D R K + Sbjct: 162 LWPRDLGASDLRANWSNEPTWNLGCAMQSNVAAQVADPIDLVRGRPEGRIDTVLRTKDLG 221 Query: 240 RYRQ 243 + R+ Sbjct: 222 QLRE 225 >gi|170750190|ref|YP_001756450.1| pilus biogenesis lipoprotein CpaD [Methylobacterium radiotolerans JCM 2831] gi|170656712|gb|ACB25767.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylobacterium radiotolerans JCM 2831] Length = 247 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 66 SDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 +DYR R+PI++ + +D+ G G + + F+ +Y+ L + +P Sbjct: 42 TDYRARHPIVLTDGTRSLDVF-PTGTGHLDPRQATDVDAFMLEYRRYGRGSLLMQVPQGV 100 Query: 126 V--SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKC 182 ++ R + ++ +G+ I+ Y IRLS+ + A C Sbjct: 101 PADQVVAVERTASVLGRLGTQNGVNGREIAVTGYAVAAPTLASPIRLSFQRMQAKVADAC 160 Query: 183 GFWPEDMLGN----AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238 G WP+D+ + NR N GCA Q+N+AAQV +P+DL R D +R + I Sbjct: 161 GLWPQDLGTSNFAIDYNNRPSWNLGCATQSNVAAQVADPVDLVRGRPEGRIDTVKRVRDI 220 Query: 239 QRYR 242 + R Sbjct: 221 GQLR 224 >gi|296444394|ref|ZP_06886359.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus trichosporium OB3b] gi|296258041|gb|EFH05103.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylosinus trichosporium OB3b] Length = 245 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYRDR+P+++ +D+ + D I+ F+++Y+ + LL P+ + Sbjct: 48 DYRDRHPVVLADATTAIDVF---PEQRLDQATVDRIQSFVQRYRRLGHGQITLLAPTGSR 104 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGKCGFW 185 ++ + R V +R+ + SG+ ++ Y +RLS+ K A +CG W Sbjct: 105 NT-ATRAGVDAVRRQLADSGV-AGAVYVGTYPVSDADLAAPVRLSFQGIKAKVADRCGQW 162 Query: 186 PEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 PED+ + N N+GCA Q LAAQ+ +P DL SPR TP D E R +++ + Sbjct: 163 PEDLASASSLKGWNNDTHWNFGCANQATLAAQIDDPRDLASPRGETPADIESRMRALNKV 222 Query: 242 R 242 R Sbjct: 223 R 223 >gi|170740620|ref|YP_001769275.1| pilus biogenesis lipoprotein CpaD [Methylobacterium sp. 4-46] gi|168194894|gb|ACA16841.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylobacterium sp. 4-46] Length = 249 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%) Query: 64 EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123 E + + R+PI + + +D+ + G G + D + FL +++ VL + +P Sbjct: 43 EPASVQARHPIALADAPRNLDVFV-TGMGHVDPRQADDVDAFLLEFRRYGRGVLVIEVPR 101 Query: 124 P-TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS-AGK 181 ++ R +R+ ++ G+ + Y +RLS+ + Sbjct: 102 GGQAPGPAVARTAALLRERALARGVSARELVVAPYPVANASVAAPVRLSFQRMQAKVTST 161 Query: 182 CGFWPEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKS 237 CG WP D+ + NR N+GCAYQ+N A Q+ +P+DL R D R + Sbjct: 162 CGLWPNDLGVSDPAVDVSNRTHWNHGCAYQSNFARQIADPVDLVRGRQEGRIDTISRTQD 221 Query: 238 IQRYR 242 I+ R Sbjct: 222 IESLR 226 >gi|220922780|ref|YP_002498082.1| pilus biogenesis lipoprotein CpaD [Methylobacterium nodulans ORS 2060] gi|219947387|gb|ACL57779.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylobacterium nodulans ORS 2060] Length = 246 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 70 DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT-VSS 128 R+PI++ + +D+ + G G + D I FL +Y+ VL + +P V Sbjct: 46 ARHPIVLADAPRSLDVFV-TGIGHVDPRQSDDIDAFLLEYRRYGRGVLVIEVPRGAQVPG 104 Query: 129 ASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP-SAGKCGFWPE 187 ++ R +R+ + G+P + Y +R+S+ + +G CG WP+ Sbjct: 105 PAVARTAALLRERAVGRGVPARELVVAPYAVVNPAVAAPVRMSFQRMQARVSGACGLWPQ 164 Query: 188 DMLGNAKG----NRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 D+ + G N ++ NYGC+ + N A+Q+ +P+DL R D R + I+ R Sbjct: 165 DLGVSEPGFELRNESFWNYGCSTRANFASQIADPVDLVRGRQEGRIDTVSRTQDIESLR 223 >gi|300021855|ref|YP_003754466.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Hyphomicrobium denitrificans ATCC 51888] gi|299523676|gb|ADJ22145.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Hyphomicrobium denitrificans ATCC 51888] Length = 245 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 4/177 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASV--LFLLIPSP 124 D R+PIL+ + ++++ + AG + + F+++++ A + P+ Sbjct: 50 DPEQRHPILVSQQPAVLNLHVAAGSEGLTPSQRSRVIDFIDRHRASDAGNSRFVISAPAG 109 Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGF 184 + + A+ A D R++I+ G SSI+ Y A +R+SY +CG Sbjct: 110 SSNEAAAMDAASDTRRLILGGGYADSSIANEAYHASGRD--APLRISYLRYVAEGPECGR 167 Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 + L A N + N+GC+ Q NLAA V NP DL PR +TP DA +R K ++Y Sbjct: 168 DWSENLARAYQNTPYPNFGCSSQRNLAAMVSNPADLLGPRTMTPSDANRRFKMYEKY 224 >gi|154250690|ref|YP_001411514.1| pilus biogenesis lipoprotein CpaD [Parvibaculum lavamentivorans DS-1] gi|154154640|gb|ABS61857.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Parvibaculum lavamentivorans DS-1] Length = 234 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 5/199 (2%) Query: 48 FFLLLFYGTSALAYYD--EGSDYRDR--YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103 F L L +G + ++ E + Y +PI + ++I ++ G+ + + I Sbjct: 16 FALALAFGVAGCGGFNGAEQAHYDANYTHPISVEADVATLNIDVVPGQPGVTSTDRNAIA 75 Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163 GF Y+ L + PS + ++ + A+ D+R+++ G+ + +S Y A Sbjct: 76 GFAAGYRQRGHGPLTISTPSGSPNAGAAAVALSDVREVLSEHGVGGNDLSYTPYRASGTD 135 Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223 + + LS+ CG W + N N+GC+ QNNLAA V +P DL +P Sbjct: 136 NSAPLILSFKRYVAKPTACGDWSGSYSYD-PSNGLLPNHGCSTQNNLAAMVADPGDLIAP 194 Query: 224 RMVTPPDAEQRDKSIQRYR 242 R ++P DA +R +++YR Sbjct: 195 RNMSPADAARRGTVLEKYR 213 >gi|323137426|ref|ZP_08072504.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis sp. ATCC 49242] gi|322397413|gb|EFX99936.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Methylocystis sp. ATCC 49242] Length = 254 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DY DR+P+++ + ++D+ G + Y I+ F+E Y+ + LL P Sbjct: 56 DYHDRHPVVLAEAPHVIDLFPSVVHGGVDYTTEGRIKEFVEHYREFGHGQVTLLTPVGAP 115 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-GKCGFW 185 SA+ V +R+ + ++G+ + I Y IRLS+ + K G+CG W Sbjct: 116 YSAA---GVSAVRRALAAAGLRGN-ILVGTYSVTDPRLAAPIRLSFQSLKAKVSGRCGEW 171 Query: 186 PEDMLGNAK----GNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 P D+ N+++ N+GCA Q L+AQV +P DL PR T D E R ++I R Sbjct: 172 PTDLASGTSLQGWENQSYWNFGCASQQTLSAQVADPRDLAVPRGETASDIEMRMRAINRV 231 Query: 242 RQ 243 R+ Sbjct: 232 RR 233 >gi|114798148|ref|YP_761690.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444] gi|114738322|gb|ABI76447.1| pilus assembly protein CpaD [Hyphomonas neptunium ATCC 15444] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 1/170 (0%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI + K + +++ + A GE+ I+ F+ Y L L +P + + Sbjct: 46 PIKVEKRTEFLEVSIDAYAGELSSSDRARIQDFMRGYVRRGHGPLVLSMPQVSSNPQLAV 105 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 AV + R I G+ IS + + L+Y + + A C N Sbjct: 106 AAVAEARAIAWDMGVEYQEISGTA-HGSGSSVSEPMILAYQSYEAIAPNCPPKSTVDFSN 164 Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 N GC+ + NLAA +++P DL R + D +R+ ++++R Sbjct: 165 IDSNNQMETLGCSVRTNLAAMIIDPADLLGNRPLDRSDLARREVILEKFR 214 >gi|83859358|ref|ZP_00952879.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633] gi|83852805|gb|EAP90658.1| pilus assembly protein CpaD [Oceanicaulis alexandrii HTCC2633] Length = 218 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 79 VEQIVDIP--LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVK 136 + V + + A + + D I +YK L + P ++ + A+ Sbjct: 32 APETVRVSMDVSALDNGLTWNQIDVIEAVAAEYKARGHGPLVISYPQNAGNADAAIGAIA 91 Query: 137 DIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN 196 + R + +G+ IS Y+A + S+ + A +C DM + + N Sbjct: 92 EARTRLYEAGLDWRQISGGAYEAGG-QASAPVIFSFTRYQAVAPECSTAWNDM-AHMRAN 149 Query: 197 RNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 ++W +GCA NNLA V +P DL +PR V PD+ +R + RYRQ Sbjct: 150 QDWPRFGCATANNLANMVADPRDLVAPRGVDAPDSARRQTVLDRYRQ 196 >gi|167648151|ref|YP_001685814.1| pilus biogenesis lipoprotein CpaD [Caulobacter sp. K31] gi|167350581|gb|ABZ73316.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter sp. K31] Length = 234 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143 ++ L+ + + G L ++ A + + P + R +R+ +I Sbjct: 56 EVLLVLHAEGLSANQAQALDGLLNRWLAAEAREILVSAPIGGKDADVAGRMAFAVRQRLI 115 Query: 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYG 203 + G P +S+ YDA G+ +++ + CG W + + + N+ + N+G Sbjct: 116 AMGAPPASVRVVGYDAGAGLAAAPLKVGFLRYHAQVPTCGGW--ENIAATRDNKPYDNFG 173 Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 CA N+AAQV NP DL SPR TP D+ +RD + +YR+ Sbjct: 174 CAVTANMAAQVANPEDLLSPRATTPVDSARRDTVLGKYRK 213 >gi|218670939|ref|ZP_03520610.1| pilus assembly protein [Rhizobium etli GR56] Length = 170 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR R+PI++ + EQ VDIP+ + + D IRGF Y + ++ +++L P + Sbjct: 54 DYRARHPIIVTEAEQTVDIPVASTDRRLTIAQRDLIRGFAANYISRASGPVYVLSPEGSP 113 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183 +SA+ + +R + S GI S I Y A D IRLS+ + +CG Sbjct: 114 NSAAAHQLRNHVRAELASRGIASSKIINTSYAAAGAGDAAPIRLSFTGTTAVTTQCG 170 >gi|295690797|ref|YP_003594490.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter segnis ATCC 21756] gi|295432700|gb|ADG11872.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Caulobacter segnis ATCC 21756] Length = 229 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 10/161 (6%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143 +I L+ + ++ + ++ L + PS +R+ +I Sbjct: 57 EILLMVHATGLSDNQRVALQALVGRWLQAEGRELVVTAPSG------AGAMAVQVRERLI 110 Query: 144 SSGIPVSSISERIYDADYGMDVDTI-RLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202 G P + + D + + R+ + + KCG E + + N+ + N+ Sbjct: 111 FLGAPAAHVRIVGADPSLP--PEPVLRVGFVRYEAEVPKCGQAWESL-TATRDNKAYENF 167 Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 GCA N+AAQV NP DL PR +TP DA +RD + +YR+ Sbjct: 168 GCAVAANMAAQVANPEDLVRPRDMTPADAGRRDTVMGKYRR 208 >gi|114568971|ref|YP_755651.1| pilus biogenesis lipoprotein CpaD [Maricaulis maris MCS10] gi|114339433|gb|ABI64713.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Maricaulis maris MCS10] Length = 227 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 5/155 (3%) Query: 91 RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVS 150 + + + +YK L + P + + A+ + R GI Sbjct: 53 DNGLTWAQQGMLAAVAAEYKARGHGPLVISYPQGAGNEDAAIGAIAEARSFFYEQGIDWR 112 Query: 151 SISERIYDADYGMDVDTIRLSYFASKPSAG-KC-GFWPEDMLGNAKGNRNWTNYGCAYQN 208 I+ YDA + S+ + A +C G W D + N++ TN+GCA Sbjct: 113 VIAGGAYDARG-RQNGELIFSFTRYEAVAPAECDGSW--DQMALEFDNQHHTNFGCALAV 169 Query: 209 NLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 NLAA V +P DL +PR + D +R I+ YR+ Sbjct: 170 NLAAMVADPRDLVAPRDMEAGDTGRRQTVIEGYRE 204 >gi|302381755|ref|YP_003817578.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas subvibrioides ATCC 15264] gi|302192383|gb|ADK99954.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 5/159 (3%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + L + + ++ + A VL + PS + I+ + + Sbjct: 47 VALAVHDTGLSANQTRALEDIAGRFYAEGAPVLRIEAPSG--NDPVASEMAWRIKGALEA 104 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGC 204 SG+ + Y A + + + + +CG ++ N + N+GC Sbjct: 105 SGVSSYQVQVVTYVAPDPR--APVLVGFDTVRAVVPQCGTGWTNL-TRTGSNAGYGNFGC 161 Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 A NLAAQ+ NP D+ PR +TP DA +R YRQ Sbjct: 162 AVNANLAAQIANPRDIVQPRTMTPVDAGRRAVVFDNYRQ 200 >gi|218508708|ref|ZP_03506586.1| pilus assembly protein [Rhizobium etli Brasil 5] Length = 150 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%) Query: 143 ISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202 G I Y A D IRLS+ + +CG WP+D+ N N+N+ N+ Sbjct: 36 RREGSRARKIINTSYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNF 94 Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 GCA QNNLAAQV NP DL +PR +TP DA++R+ +IQ YR Sbjct: 95 GCATQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAIQEYR 134 >gi|254420868|ref|ZP_05034592.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas sp. BAL3] gi|196187045|gb|EDX82021.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Brevundimonas sp. BAL3] Length = 205 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 I L + H +R +++ A V+ + P+ S A+ + D R + Sbjct: 30 IALAVHEQGLSANQHAALRDLAQRFAAAGAGVIVIEAPAGEDSVAA--KTAFDTRAALAQ 87 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGC 204 G+ + + Y + + + + + +CG ++ N + +N+GC Sbjct: 88 IGLDPNRLRVVSYAGPDPR--APVLVGFETVQAAVPRCGAAWGNL-SRTGDNMSGSNFGC 144 Query: 205 AYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 A NLAAQ+ +P D+ +PR +TPP+A +R RYRQ Sbjct: 145 AVTANLAAQIADPRDIAAPRALTPPEAGRRSVVFDRYRQ 183 >gi|16127174|ref|NP_421738.1| pilus assembly protein CpaD [Caulobacter crescentus CB15] gi|221235975|ref|YP_002518412.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000] gi|7208426|gb|AAF40193.1|AF229646_5 CpaD [Caulobacter crescentus CB15] gi|13424570|gb|AAK24906.1| pilus assembly protein CpaD [Caulobacter crescentus CB15] gi|220965148|gb|ACL96504.1| pilus assembly protein CpaD [Caulobacter crescentus NA1000] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 11/170 (6%) Query: 74 ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133 I + +I L + + + ++ A L + P ++A Sbjct: 46 IKVDPAPD--EILLKPHASGLSANQSAALEALVSRWLAAEARELVVTAP----NTAGAMA 99 Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193 +IR + G + + D + IR+ + + KCG E++ Sbjct: 100 I--EIRDRLAGLG-AGARVRVVGVDPASAEEGA-IRVGFVRYEARPIKCGQRWENL-AAT 154 Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + N + N+GCA N+AAQV NP DL PR +TP D +RD + +YR+ Sbjct: 155 RDNTVYDNFGCAMAANIAAQVANPEDLMRPRDMTPADTGRRDTVLGKYRR 204 >gi|218516618|ref|ZP_03513458.1| pilus assembly protein [Rhizobium etli 8C-3] Length = 102 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV 215 Y A D IRLS+ + +CG WP+D+ N N+N+ N+GCA QNNLAAQV Sbjct: 1 SYAAAGAGDAAPIRLSFTGTTAITTQCGQWPKDI-SNDFANQNYYNFGCATQNNLAAQVA 59 Query: 216 NPLDLFSPRMVTPPDAEQRDKSIQRYR 242 NP DL +PR +TP DA++R+ +IQ YR Sbjct: 60 NPEDLVAPRGMTPIDAQRRNNAIQEYR 86 >gi|254293215|ref|YP_003059238.1| type IV pili component-like protein [Hirschia baltica ATCC 49814] gi|254041746|gb|ACT58541.1| Type IV pili component-like protein [Hirschia baltica ATCC 49814] Length = 218 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 5/169 (2%) Query: 74 ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133 I +++ +++ G G + + F+E + +D + L P + R Sbjct: 37 IEVKEQTHYLEL-TELGVGHLTPADRRRVELFVENFADDGYGPIVLSAPDGS---REAVR 92 Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193 A+ IR I+ +G+ +I+ Y + + L+Y + + C E + Sbjct: 93 AITSIRSILSRAGVLPDNITVGGYQPA-AGNAAPLVLAYKSYQAHVPGCSTVNEHDWTDL 151 Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 + N + ++GCA N+A + P DL R + D+ ++ ++YR Sbjct: 152 RSNSSVGSFGCAVNENIAMMIAKPGDLLGERKIGDGDSSRQLTVYEKYR 200 >gi|304320648|ref|YP_003854291.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis HTCC2503] gi|303299550|gb|ADM09149.1| hypothetical protein PB2503_05377 [Parvularcula bermudensis HTCC2503] Length = 212 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 4/160 (2%) Query: 71 RYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSAS 130 R+PI + + + IP+ + R + + F+ Y+ + + P+ T Sbjct: 33 RHPITVDQQAVTLTIPIDSTRSGLSRGDLQQLDRFVSAYRTKGYGPITVTAPAGTGRDLE 92 Query: 131 IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190 +R + SG+ + I + +S+ +CG + + Sbjct: 93 ANETAAAVRAALNDSGVAYADIQGAS---VTSSTAKEVMVSFVRYVAQGPQCGVFDNERA 149 Query: 191 GNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD 230 + N + N+GC+ Q+NLAA + +P DL + T D Sbjct: 150 ARFR-NLSHPNFGCSSQHNLAAMIADPRDLTRAQSTTTRD 188 >gi|218662338|ref|ZP_03518268.1| pilus assembly protein [Rhizobium etli IE4771] Length = 79 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%) Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238 +CG WP+D+ N N+N+ N+GCA QNNLAAQV NP DL +PR +TP DA++R+ +I Sbjct: 1 TTQCGQWPKDI-SNDFANQNYYNFGCASQNNLAAQVANPEDLVAPRGMTPIDAQRRNNAI 59 Query: 239 QRYR 242 Q YR Sbjct: 60 QEYR 63 >gi|83312841|ref|YP_423105.1| Type IV pili component [Magnetospirillum magneticum AMB-1] gi|82947682|dbj|BAE52546.1| Type IV pili component [Magnetospirillum magneticum AMB-1] Length = 236 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 4/176 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI++ + + A + D + E+ A + + + + Sbjct: 30 DYRLSHPIVVEEKAAVALFARPAEGAALSDADRDRLGRLAEESARRGAGPIQISVGALPG 89 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD-VDTIRLSYFASKPSAGKCGFW 185 A + + + + G+ S+S + +R+ + A +CG + Sbjct: 90 EEAGALAFAQTLADTLRAWGVGPVSVSVAGGADAVPQPGIAQVRV--PVWEAKAPECGNF 147 Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 + N N +N+GC+ Q N A V NP DL R + D + +++Y Sbjct: 148 ERGLNPN-YSNAPHSNWGCSIQRNKALMVQNPADLVRARETSGRDGARATTVLEKY 202 >gi|46201038|ref|ZP_00207940.1| hypothetical protein Magn03010629 [Magnetospirillum magnetotacticum MS-1] Length = 227 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 4/178 (2%) Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 DYR +PI + + + A + D + E+ A + + + + T Sbjct: 28 DYRLSHPIAVEEKAAVALFARPAPGAPLSDIDRDRLGRLAEESLRRGAGPIQITVGARTG 87 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMD-VDTIRLSYFASKPSAGKCGFW 185 A + + + + + G+ ++ + +R+ + A +CG + Sbjct: 88 EEADAQAFAQTLSDTMRAWGVGPVVVAVAGGADAVPQPGLAQVRV--PVWEAKAPECGTF 145 Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + + N +N+GC+ Q N A V NP DL R + DA + + +++Y + Sbjct: 146 DRGLNPD-YANAPHSNWGCSIQRNKALMVQNPADLVRARDTSGRDANRANDVLEKYGK 202 >gi|315497464|ref|YP_004086268.1| pilus (caulobacter type) biogenesis lipoprotein cpad [Asticcacaulis excentricus CB 48] gi|315415476|gb|ADU12117.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Asticcacaulis excentricus CB 48] Length = 228 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 7/174 (4%) Query: 70 DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSA 129 D+YP+ + + + + + K L + T ++ Sbjct: 41 DQYPLQAESRTDALH-FKIHPKSGLSDNQRRALDQVARK--ASWNGGEALDMTILTANTP 97 Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189 RA IR + + V ++S+ + V I Y + C E++ Sbjct: 98 DALRAGAAIRAYLNDHQVSVHAVSQTTAEGQPADVVSLITREY---RAVVNDCNLEWENL 154 Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + N N GCA NLAAQ+ +P D+ +P+ TP DA +R I +YR+ Sbjct: 155 -AATRHNAAPQNLGCAINANLAAQIDDPRDIAAPQPATPGDAGRRTVIIDKYRK 207 >gi|329847254|ref|ZP_08262282.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein [Asticcacaulis biprosthecum C19] gi|328842317|gb|EGF91886.1| pilus Caulobacter type biogenesis lipoprotein CpaD family protein [Asticcacaulis biprosthecum C19] Length = 219 Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178 + + T + A I + + ++S+ + V +SY + S Sbjct: 78 VDVQIITSPDPASMAAGNAIAGYLAGRDVSRDAVSQFSVQSQPVEIVTVNVVSY---RAS 134 Query: 179 AGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSI 238 CG E++ + N N+GCA NLAAQV +P DL P TP DA ++ + Sbjct: 135 VPGCGQTWENL-AATRKNTPHANFGCAITANLAAQVADPRDLVDPATATPSDAGRKSVVL 193 Query: 239 QRYRQ 243 +YR+ Sbjct: 194 DKYRR 198 >gi|103486616|ref|YP_616177.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256] gi|98976693|gb|ABF52844.1| hypothetical protein Sala_1128 [Sphingopyxis alaskensis RB2256] Length = 213 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 14/159 (8%) Query: 87 LLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPS--PTVSSASIRRAVKDIRKIII 143 + A GE+ ++G F + + PS S+ + RA+ + R +++ Sbjct: 46 VAAKDGELPPSEQGRLQGWFDAMGIRYG-DRVAIEDPSLYGASSAQATVRAMVERRGLLL 104 Query: 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYG 203 S +PV++ + IR+ + S C W N+ N +NYG Sbjct: 105 SKDVPVTTGAVPDGH---------IRVVVTRASASVPGCPDWNSKSSLNSL-NATSSNYG 154 Query: 204 CAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 CA +NLAA V +P DL T D ++IQ YR Sbjct: 155 CATNSNLAAMVADPNDLIKGTRDTGHDPVAATRAIQTYR 193 >gi|332188354|ref|ZP_08390079.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17] gi|332011583|gb|EGI53663.1| pilus biogenesis CpaD family protein [Sphingomonas sp. S17] Length = 230 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 22/178 (12%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS-VLFLLIPSPTVSSAS 130 + ++ + + +D+ L R G+ + + P+ A Sbjct: 32 HQPVVSQADYALDLALSGNRLAGDEAQR--FEGWARN-LQLGYGDRVTIEDPAGDAPGA- 87 Query: 131 IRRAVKDIRKIIISSGI---PVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187 + I +++ G+ P +SI A + TIR+ ++ + C W Sbjct: 88 ----YRQIAEMVGRYGLLVGPAASI------ARAPLAPATIRVVVTRARATVPGCPDWRS 137 Query: 188 DMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP--PDAEQRDKSIQRYRQ 243 D+ + GN + +N+GCA NLAA V +P L P D ++I +RQ Sbjct: 138 DVAPDWVGNTS-SNHGCAINRNLAAMVADPTHLVHG-AEGPASADPAAATRAINIFRQ 193 >gi|296284553|ref|ZP_06862551.1| hypothetical protein CbatJ_13041 [Citromicrobium bathyomarinum JL354] Length = 214 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 20/179 (11%) Query: 68 YRDRYPILMRKVEQ-IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 Y P++ + +D + AG G + P + G+ E D + + + + Sbjct: 33 YSLNQPVV--ERTHYTLD--VAAGPGGLPIPEQRRLAGWFEALDLDYGDRVAVEADTASP 88 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 ++ + + + +++S PV+ R+ S + C W Sbjct: 89 ATIAAVAGIVERYGLLLSDQAPVTEGFVEPGRT---------RVVVTRSVATVPTCPNW- 138 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP---RMVTPPDAEQRDKSIQRYR 242 D N NYGCA +N AA V NP DL R + + R +I+ YR Sbjct: 139 TDDGDGNFANATSRNYGCATNSNYAAMVANPEDLVRGQSSRGGSSVNGSNR--AIEAYR 195 >gi|149186256|ref|ZP_01864570.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21] gi|148830287|gb|EDL48724.1| hypothetical protein ED21_31004 [Erythrobacter sp. SD-21] Length = 217 Score = 74.6 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 26/182 (14%) Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126 Y + P ++ + ++D+ + + G F + + Sbjct: 35 YSVKQP-VVERSNYVLDL--NTTAEGLPVSEQQRLTGWFESMGLRYG-DRVAID---DGS 87 Query: 127 SSASIRRAVKDIRK---IIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183 +S ++R V +I I+++ G PV++ + A R+ S S C Sbjct: 88 NSLAVRDDVAEIASRYGILVAEGAPVTAGNLGPGQA---------RVVITRSTASVPGCP 138 Query: 184 FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR---MVTPPDAEQRDKSIQR 240 W + N GN NYGCA +NLA+ V NP DL + T K+I+ Sbjct: 139 DWSHTVEAN-DGNATNPNYGCATYSNLASMVANPEDLVQGQQGTGETIVTTS--TKAIEA 195 Query: 241 YR 242 YR Sbjct: 196 YR 197 >gi|85373130|ref|YP_457192.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594] gi|84786213|gb|ABC62395.1| hypothetical protein ELI_01515 [Erythrobacter litoralis HTCC2594] Length = 188 Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 16/177 (9%) Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126 Y + P ++ + +D + G G + P + G F + + P + Sbjct: 8 YSTKQP-VVERTNYTLD--VRTGPGGLSIPEQQRLSGWFEAMNLRYG-DRVSIEDPMLSG 63 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 S+ + I++S G PV+S A R+ S S C W Sbjct: 64 STKDAISQLAGRHGILVSDGAPVTSGYVEPGSA---------RVVITRSSASVPGCPDWS 114 Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP-RMVTPPDAEQRDKSIQRYR 242 N YGCA NLAA V +P DL + K+++ YR Sbjct: 115 -VKSEMNYTNGTHPGYGCAINGNLAAMVADPEDLVKGDEGSGETYVRRGSKAVEAYR 170 >gi|326388863|ref|ZP_08210445.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM 19370] gi|326206463|gb|EGD57298.1| hypothetical protein Y88_3607 [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 71.5 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131 + ++ + D+P L G I+ + + + + P+ + + + Sbjct: 54 HQPVIERTNYTFDVPTL-PDGGIEPAQLRRLSDWFSALGLKFGDRVSIDDPASSAVTRAA 112 Query: 132 RRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLG 191 AV ++++ PV+ + T+R+ + S C W + Sbjct: 113 VEAVMSRFGLMLNGAAPVTE---------GALAGGTVRIVVSRTYASVPGCPDW-KARSD 162 Query: 192 NAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR-MVTPPDAEQRDKSIQRYR 242 N N+GCA N+AA V N DL + V K+I YR Sbjct: 163 ANFNNATSRNFGCATNANMAAMVANKEDLVHGQTGVGDTVVMSNTKAIDTYR 214 >gi|85707701|ref|ZP_01038767.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1] gi|85689235|gb|EAQ29238.1| hypothetical protein NAP1_00660 [Erythrobacter sp. NAP1] Length = 214 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 24/182 (13%) Query: 68 YRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG-FLEKYKNDSASVLFLLIPSPTV 126 Y + P++ + + R + + G F + + PS Sbjct: 34 YSLKQPVV---ERTNFAMDVNTNRSGLSISEQQRLNGWFETMDLRYG-DRVAIEDPSSNP 89 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDT--IRLSYFASKPSAGKCGF 184 ++ AV ++ + + R+ S S C Sbjct: 90 ---AVAEAVNELAG--------RYGLIVTEVAPTTSGTLAPGQARVVITRSDASVPGCPD 138 Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPR---MVTPPDAEQRDKSIQRY 241 W N N + YGCA +N+AA + NP DL + T R +I+ Y Sbjct: 139 WSTKSDMN-YNNASSPGYGCAINSNMAAMIANPEDLLEGQKGSGETVIATSNR--AIRTY 195 Query: 242 RQ 243 R+ Sbjct: 196 RE 197 >gi|307293451|ref|ZP_07573297.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum L-1] gi|306881517|gb|EFN12733.1| Pilus biogenesis CpaD-related protein [Sphingobium chlorophenolicum L-1] Length = 218 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131 + ++ D+ G + + + L + + ++ Sbjct: 39 HQPVVSHTAFTYDVQAG-PDGGLTPLEARRLDDWFVS-IGLGYGDQVALATDASYYAPAL 96 Query: 132 RRAVKDIRKIIISSGIPVSSISER--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189 R + DI + + A +RL + C W D Sbjct: 97 REGIADI--------VARHGMLVGEDSSAAAGSAPQGAVRLIVRRATARVPGCPDWS-DK 147 Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243 + N+GC NLAA + NP DL T D +++I YR+ Sbjct: 148 PETDQQLGASANFGCGVNGNLAAMIANPEDLVRG-QTTDSDLRTATSNRAISTYRE 202 >gi|288956970|ref|YP_003447311.1| hypothetical protein AZL_001290 [Azospirillum sp. B510] gi|288909278|dbj|BAI70767.1| hypothetical protein AZL_001290 [Azospirillum sp. B510] Length = 234 Score = 69.6 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 21/209 (10%) Query: 44 LGQLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103 L L ++ G + Y E + + + + + E + L+G + + +R Sbjct: 14 LAGLLASVVLAGCTPTPLYQENTAVQQQLTVDVATAETTL--SPLSGARPLDGASVERLR 71 Query: 104 GFLEKYKNDSAS-VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162 F+ + + + + + T VK + ++ ++G+P IS Sbjct: 72 RFVME---EGNPYAVRIRL---TPGDRVADGVVKRVIAVLTAAGVPGRGISV---SMVNR 122 Query: 163 MDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNW---------TNYGCAYQNNLAAQ 213 + +RL + C D L + + + GCA NL Sbjct: 123 PVGNELRLRRETATAVLPDCPPLNRDTLLDRENDTPLDLGRAPPPPPRLGCATTANLGLM 182 Query: 214 VVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 + +P DL P+ P + ++ RYR Sbjct: 183 LADPRDLIEPQRSGPASGALAEDTVGRYR 211 >gi|237678813|emb|CAQ57540.1| hypothetical protein [Bradyrhizobium elkanii] Length = 221 Score = 67.6 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 9/150 (6%) Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151 ++ +R F+ L + + + + R + + + GI + Sbjct: 46 QSLRGSERHRLRNFIAHASGGRRDALHIDV-TGSP------RLIAQVAHEARAMGIAPYN 98 Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211 I D +R+ + C + N GC+ +NNLA Sbjct: 99 IRLAASPIDLPARFG-VRIEAITFEAHPPVCPSLSI-VGPAVNDNSFDPTLGCSTRNNLA 156 Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V +P+DL R V ++ + Y Sbjct: 157 VMVNDPIDLLDNRSVMTSSGDRAASPLASY 186 >gi|13475295|ref|NP_106859.1| hypothetical protein mlr8762 [Mesorhizobium loti MAFF303099] gi|14026046|dbj|BAB52645.1| mlr8762 [Mesorhizobium loti MAFF303099] Length = 186 Score = 67.3 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 23/170 (13%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PIL+R ++ + ++ +R FL++ + L LLI + Sbjct: 32 PILIRPETTVLIL------KSLRASERQRLRVFLDRTSSGRRDALHLLI-WGS------S 78 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 R ++ GI +I + V+ I C + +L + Sbjct: 79 RLSAEVVHQARQMGIDTYNIHLLDQHDGGAVQVEAI-----VYHARPPACPSYS--LLSD 131 Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 + GC+ + NLAA V +P DL + V P D E+ + YR Sbjct: 132 KSFEKP---LGCSTRRNLAAMVNDPRDLLDNQAVEPSDGERAAIPVATYR 178 >gi|294012434|ref|YP_003545894.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S] gi|292675764|dbj|BAI97282.1| Flp pilus assembly protein CpaD [Sphingobium japonicum UT26S] Length = 222 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131 + ++ D+ G + + + + S ++ Sbjct: 43 HQPVVSNAAFTYDVQAG-PDGGLTASEARRLDDWFVS-IGLGYGDQVAIATDAGYYSPAL 100 Query: 132 RRAVKDIRKIIISSGIPVSSISER--IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189 R + D+ + + +RL + S C W D Sbjct: 101 REGIADV--------VARHGMLVGEDGTAVAGAAPQGAVRLIVRRAIASVPGCPDWS-DK 151 Query: 190 LGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPD--AEQRDKSIQRYRQ 243 + TN+GC NLAA + NP DL T D +++I YR+ Sbjct: 152 PETDQQLGTSTNFGCGVNGNLAAMIANPEDLVRG-QTTDSDLRTATSNRAISTYRE 206 >gi|84386796|ref|ZP_00989821.1| putative lipoprotein [Vibrio splendidus 12B01] gi|84378324|gb|EAP95182.1| putative lipoprotein [Vibrio splendidus 12B01] Length = 207 Score = 65.7 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 13/150 (8%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + I F+ + L L+ ++ + +R +I SG+ S IS Sbjct: 46 LSAQEKADISDFIAR-----RGTLSNLMVKIENTTQKGESQSEKVRLRLIESGLYPSQIS 100 Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKC--GFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211 A D I + + + C G P L + R N+GCA N LA Sbjct: 101 VSDTAAQGKGD---ITIFVESYRAKVTACDAGKTPRTTLNAYRTQR---NFGCANANALA 154 Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V NP DL + + ++ SI Y Sbjct: 155 QMVANPKDLIVGQPIDSAQGQKAVSSIDNY 184 >gi|94497255|ref|ZP_01303827.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58] gi|94423360|gb|EAT08389.1| hypothetical protein SKA58_13673 [Sphingomonas sp. SKA58] Length = 215 Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 19/177 (10%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131 + ++ D+ +G + + + ++ + Sbjct: 35 HQPVVSHAAYTFDVMAGSGDT-LPPAEAARLNDWFVS-IGLGYGDQVAIV-----NDGYY 87 Query: 132 RRAVKD-IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDML 190 A+++ I ++ G+ V +IRL + S C W Sbjct: 88 GPALREGIANVVARHGLLVGE---DSSAIAGAAPQGSIRLIVRRATASVPGCPDWSAKQ- 143 Query: 191 GNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD----KSIQRYRQ 243 + +N+GC +NLAA V NP DL + D++ R ++I YR+ Sbjct: 144 ESEMTLGTSSNFGCGVNSNLAAMVANPEDLVRGQS---SDSDLRTATSNRAISTYRE 197 >gi|148557760|ref|YP_001265342.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1] gi|148502950|gb|ABQ71204.1| hypothetical protein Swit_4867 [Sphingomonas wittichii RW1] Length = 252 Score = 64.6 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 34/214 (15%) Query: 38 FLRTLMLGQLFFLLLFYGTSALA-YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKY 96 F +LG L + L T ALA Y+ G + ++++ + ++D+P + Sbjct: 45 FAGMTILGTLGIIAL-AATPALADRYNRG--VESVHQPVVQRSDYVLDVPAD----GLDP 97 Query: 97 PIHDTIRGFLEKYKNDSAS---VLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 D + + + + + + + +DI +I G + Sbjct: 98 AARDRV---GQWFDAIGLGYGDRIAIDTSAGG------TGSNRDIAEIAGRYG-----LF 143 Query: 154 ERIYDADYGMDVDT--IRLSYFASKPSAGKCG---FWPEDMLGNAKGNRNWTNYGCAYQN 208 + +R+ S S C W + A +NYGCA + Sbjct: 144 VGSAAPMTEGAIAPGHVRIVVSRSTASVPGCPDYSQWSQPNFTAAAS----SNYGCAINS 199 Query: 209 NLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 LAA V NP DL + +A+ K+I+ +R Sbjct: 200 TLAAMVANPEDLVKGQAARGSNADTATKAIRIWR 233 >gi|87199100|ref|YP_496357.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM 12444] gi|87134781|gb|ABD25523.1| hypothetical protein Saro_1078 [Novosphingobium aromaticivorans DSM 12444] Length = 223 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 10/152 (6%) Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151 G + + G+ E + + P + ++ S AV ++++ G Sbjct: 56 GGLSITEQRRLAGWFESLGLKYGDKIAVDDPLQSKATLSAVDAVAGRWGLMLADGAAP-- 113 Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211 Y A +R+ + S C W E N TN+GCA +NLA Sbjct: 114 -VTPGYVAPGA-----VRVVVTRATASVPGCPSW-EYNSDMTLNNHTSTNFGCAVNSNLA 166 Query: 212 AQVVNPLDLFSP-RMVTPPDAEQRDKSIQRYR 242 A V + L K+I YR Sbjct: 167 AMVADKEHLIQGASGTGETVVMSSTKAIDSYR 198 >gi|260778161|ref|ZP_05887054.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450] gi|260606174|gb|EEX32459.1| putative lipoprotein [Vibrio coralliilyticus ATCC BAA-450] Length = 208 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 18/181 (9%) Query: 65 GSDYRDRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS-VLFLLIP 122 SD R P I + V + + + + + IR F+ L + + Sbjct: 18 ASDQIARQPAIDVVSVTNKLTLAV--EKQSLTPQQQQDIRSFI---VQRGNPYSLRVKLV 72 Query: 123 SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKC 182 S + +K I +++ G+ I DV I S+ + C Sbjct: 73 SYSPKGQ---SQIKPISNLLLGQGLAKHQIMTERATGTQSGDVQVIVESF---RAKVPGC 126 Query: 183 GFWPEDMLGNAKGN--RNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 G D N + YGC+ LA V NP DL + P + + +I Sbjct: 127 G---TDKSQPVIFNQYKTHQAYGCSNAAALAQMVANPKDLVVGEKLGPTNGAKAVAAIDA 183 Query: 241 Y 241 Y Sbjct: 184 Y 184 >gi|19749314|gb|AAL98684.1| Y4xK [Sinorhizobium fredii] Length = 188 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 21/170 (12%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI +R+ ++ + + + FL K L L+I S + Sbjct: 32 PIFVRQESTVLKL------ESLHASEQQRLLAFLWKASRGRRDALHLVI-SGS------S 78 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 R + GI S+I D +R+ C +L + Sbjct: 79 RLSAEAVHQARQMGIGASNI-----HLLDQNDRGQLRVEAVVYHALPPICRSLSSQLLND 133 Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ++ GC+ +NLA + +P DL R V P D ++ + YR Sbjct: 134 EFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 180 >gi|227326303|ref|ZP_03830327.1| putative lipoprotein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 228 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 19/177 (10%) Query: 73 PILMRKVEQIVDIPL---LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSA 129 PI ++ V +PL GRG + + + L+ SA L LIP Sbjct: 51 PIAVQ--PSSVSVPLLVAPNGRGFLPESLR-QLNIMLKDQGRLSAQTLT-LIPHSASGEQ 106 Query: 130 SIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189 R V ++ ++G ++ + + + + A +C Sbjct: 107 MAGRLV----TVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC----TIN 157 Query: 190 LGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 N + + + GCA QNNLA V P DL + + D SI+RY + Sbjct: 158 DPNQLMVKPYEAMGSLGCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214 >gi|227114877|ref|ZP_03828533.1| putative lipoprotein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 228 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 13/174 (7%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI ++ V + + + L+ SA L LIP T Sbjct: 51 PIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLT-LIPHSTSGEQMAG 109 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 R ++ ++G ++ + + + + A +C N Sbjct: 110 RLA----TVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC----TINDPN 160 Query: 193 AKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + + + GCA QNNLA V P DL + + D SI+RY + Sbjct: 161 QLMVKPYEAIGSLGCATQNNLAMMVAEPRDLIQAKALDSADGVAAVNSIERYHK 214 >gi|148976306|ref|ZP_01813030.1| putative lipoprotein [Vibrionales bacterium SWAT-3] gi|145964400|gb|EDK29655.1| putative lipoprotein [Vibrionales bacterium SWAT-3] Length = 195 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 13/150 (8%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + I F+ + L L+ T ++ ++ +R +I SG+ S I Sbjct: 34 LSDQEKADISDFMSR-----RGALNNLMVKITKTTLKGESQIEKVRLHLIESGLYPSQIW 88 Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKC--GFWPEDMLGNAKGNRNWTNYGCAYQNNLA 211 + D+ + SY + C G P + + R N+GCA N LA Sbjct: 89 VADEATEGKGDITILVESY---RAKVTACDAGKTPRTTVNAYRTQR---NFGCANANALA 142 Query: 212 AQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V NP DL + ++ ++ SI+ Y Sbjct: 143 QMVANPKDLIVGQPISGTQGQKAVSSIENY 172 >gi|16520027|ref|NP_444147.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii NGR234] gi|2496775|sp|P55703|Y4XK_RHISN RecName: Full=Uncharacterized lipoprotein y4xK; Flags: Precursor gi|2182719|gb|AAB91934.1| conserved putative lipoprotein of 20.5 kDa [Sinorhizobium fredii NGR234] Length = 188 Score = 59.2 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 21/170 (12%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI +R+ ++ + + FL K L L+I S + Sbjct: 32 PIFVRQESTVLKL------ESFHASEQQRLLAFLWKASRGRRDALHLVI-SGS------S 78 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 R + GI S+I D +R+ C +L + Sbjct: 79 RLSAEAVHQARQMGIGASNI-----HLLDQNDRGHLRIEAVVYHALPPICRSLSSQLLND 133 Query: 193 AKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 ++ GC+ +NLA + +P DL R V P D ++ + YR Sbjct: 134 EFFDQP---IGCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 180 >gi|253687069|ref|YP_003016259.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753647|gb|ACT11723.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 228 Score = 59.2 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 25/180 (13%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTV 126 PI ++ V +PLLA RGFL + L + Sbjct: 51 PIAVQ--PSSVSVPLLAAPNG---------RGFLPESLKQLNIMLKDQGRLSAQTITLIP 99 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 SAS + + ++ ++G ++ + + + + A +C Sbjct: 100 HSASGEQMAGRLATVLKNAGANPQNVKQMR-RSTASGQNGDLEVISEALVVKTTRC---- 154 Query: 187 EDMLGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 N + + + GCA QNNLA V P DL + + D SI+RY + Sbjct: 155 TINDPNQLMVKPYEAIGSLGCATQNNLAMMVAEPRDLIQAKALDDADGVAAVNSIERYHK 214 >gi|149912020|ref|ZP_01900614.1| putative lipoprotein [Moritella sp. PE36] gi|149804919|gb|EDM64953.1| putative lipoprotein [Moritella sp. PE36] Length = 215 Score = 59.2 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 70 DRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS 128 R P + + V + + L + + F+ ++ S L + I S + Sbjct: 30 QRQPQVKVEAVTHKIALQLDTEA--LTKSDKTALNEFI--FQRGELSALRIRIDSYSDKG 85 Query: 129 ASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPED 188 + V + ++ ++G+ S ++ ++ ++ D+ I SY + C E Sbjct: 86 TNA---VPALIALLKNAGVYPSQVTSQLSESSSTADIALIVESYRSIV---PNCHAGKES 139 Query: 189 MLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 + N + N+GCA + LA V P DL R + D + +++ Y Sbjct: 140 HTVLNEFNSS-PNFGCANASALAQMVATPRDLIVGRTLDATDGRKAVATVEAY 191 >gi|251789647|ref|YP_003004368.1| pilus biogenesis lipoprotein CpaD [Dickeya zeae Ech1591] gi|247538268|gb|ACT06889.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Dickeya zeae Ech1591] Length = 223 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 7/170 (4%) Query: 74 ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133 I ++ V++ + ++ L + S L + T +A + Sbjct: 47 IEVKPSSLAVNLQADRNGHGLDADSLASLNQLLNQQGRVSKQTLTI-----TPWTARGEQ 101 Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNA 193 + + ++G S I +++ A C +L Sbjct: 102 IASRLANALENAGADKSRIRVMT-RVPAVNQSGDLQVLSQALAARVPACQVNDAGLLMVK 160 Query: 194 KGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + GCA Q+NLA V P DL R + D SI+RY+Q Sbjct: 161 PFDAVGY-LGCANQSNLAQMVAEPRDLIQARSLDAADGVNMVNSIERYQQ 209 >gi|27376952|ref|NP_768481.1| hypothetical protein bll1841 [Bradyrhizobium japonicum USDA 110] gi|12620549|gb|AAG60825.1|AF322012_130 ID279 [Bradyrhizobium japonicum] gi|27350094|dbj|BAC47106.1| bll1841 [Bradyrhizobium japonicum USDA 110] Length = 220 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 13/134 (9%) Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161 +R F+ L + + S + + + + + G+ S+I + Sbjct: 56 LRNFIADASGGRRDALHVDV-SGS------HKLIAQVAHEARAMGVVPSNIRLSASPLNL 108 Query: 162 GMDVDTIRLSYFASKPSAGKCGFWPEDM--LGNAKGNRNWTNYGCAYQNNLAAQVVNPLD 219 +R+ + C P + N GC+ +NNL V +PLD Sbjct: 109 SGRSA-VRIEAITFEAHLPNC---PSLLIAGPAVDDNSFEPTLGCSTKNNLGVMVNDPLD 164 Query: 220 LFSPRMVTPPDAEQ 233 L R V+ + ++ Sbjct: 165 LVDNRSVSTVNGDR 178 >gi|312883755|ref|ZP_07743474.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368504|gb|EFP96037.1| hypothetical protein VIBC2010_14179 [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 11/149 (7%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + + F+++ K + L+ S S +R++ + ++I GI V +I Sbjct: 44 LSAEQSKAVEQFVQR-KGSPYGLNVKLV----SLSKSGQRSLDQVEALLIEQGIAVKNIH 98 Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAA 212 + DV + S+ K KC P + N+ ++ ++GCA L Sbjct: 99 REHLTKEGKGDVQILIESF---KAKIPKCRVKKPSNTFINSY--KSHPSFGCATSVALGQ 153 Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V NP DL + + + +I+ Y Sbjct: 154 MVANPKDLVVGEQLGATNGAKAVATIEGY 182 >gi|261251597|ref|ZP_05944171.1| putative lipoprotein [Vibrio orientalis CIP 102891] gi|260938470|gb|EEX94458.1| putative lipoprotein [Vibrio orientalis CIP 102891] Length = 206 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 11/149 (7%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + + +++ K + L+ S S +R + I ++I GI +I Sbjct: 44 LSAKQSKAVEQLVQR-KGSPYGLNVKLV----SLSKSGQRGLNQIEALLIDQGIAAKNIH 98 Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN-RNWTNYGCAYQNNLAA 212 + DV + S+ K KC + N + ++GCA LA Sbjct: 99 REHLAENGKGDVQILIESF---KAKVPKCQA--QKYSNNFINRYKEHPSFGCATSVALAQ 153 Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V NP DL + + + +I Y Sbjct: 154 MVANPKDLVVGEQLGATNGAKAVATIDGY 182 >gi|319940441|ref|ZP_08014786.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis 3_1_45B] gi|319806067|gb|EFW02816.1| hypothetical protein HMPREF9464_00005 [Sutterella wadsworthensis 3_1_45B] Length = 274 Score = 56.9 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 13/138 (9%) Query: 113 SASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSY 172 S + + + S + + + + + +G ++ + + D R+S+ Sbjct: 124 SQGPIRRQVLTVVPLSERGEKLARRLAEALEEAGAQEPKLAVYVNEKTGKRDFPDRRVSW 183 Query: 173 ------FASKPSAGKCGFWPEDMLGNAKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSP 223 A A +C E + GCA N+A V +P DL P Sbjct: 184 DLELISEAYVVHAPEC----EVADPTRWTIEPYEAVGTLGCANNANIAMMVSDPKDLLRP 239 Query: 224 RMVTPPDAEQRDKSIQRY 241 R + D + ++Q+Y Sbjct: 240 RALEGADGTASNLAVQKY 257 >gi|261820215|ref|YP_003258321.1| pilus biogenesis lipoprotein CpaD [Pectobacterium wasabiae WPP163] gi|261604228|gb|ACX86714.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Pectobacterium wasabiae WPP163] Length = 228 Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 21/178 (11%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKND------SASVLFLLIPSPTV 126 P+ ++ V +PLL RGFL + L + Sbjct: 51 PVAVQ--PSSVSVPLLVAPNG---------RGFLPESLRQLNIMLKDQGRLSAQTLTLIP 99 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG-FW 185 SAS + + ++ ++G ++ + + + + A +C Sbjct: 100 HSASGEQMAGRLATVLKNAGADAQNVKQMR-RSTASGQTGDLEVISEALVVKTTRCTIND 158 Query: 186 PEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 P ++ + GCA QNNLA V P DL + + D SI+RY + Sbjct: 159 PNQLMVKPFDGIGY--LGCATQNNLAMMVAEPRDLIQAKALDNADGVAAVNSIERYHK 214 >gi|294139871|ref|YP_003555849.1| hypothetical protein SVI_1100 [Shewanella violacea DSS12] gi|293326340|dbj|BAJ01071.1| hypothetical protein [Shewanella violacea DSS12] Length = 208 Score = 55.7 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%) Query: 67 DYRDRYP-ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT 125 D R P I + V + + LLA + + FL + + L + I + + Sbjct: 19 DPIQRQPNIAIEAVTHVFSLRLLAET--LDGEDRAALEEFLL--RRGDPANLRVRIETHS 74 Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISE-RIYDADYGMDVDTIRLSYFASKPSAGKCGF 184 + + +V+D+ + I S I + A D+ + SY G Sbjct: 75 LRGEKVLTSVRDLMHL---RNIYPSQIRTLKRESASTSEDLTLVVESYRTLVRHCDA-GK 130 Query: 185 WPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 P+ +L + K + N+GCA + LA V NP DL ++ + + ++ Y Sbjct: 131 EPKTILNSFKRS---ANFGCANASALAQMVANPRDLVVGETLSATEGRKAVSTLDAY 184 >gi|50119735|ref|YP_048902.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043] gi|49610261|emb|CAG73704.1| putative lipoprotein [Pectobacterium atrosepticum SCRI1043] Length = 228 Score = 55.3 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 13/174 (7%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI ++ V + + + L+ SA L L+ SAS Sbjct: 51 PIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLTLI-----PHSASGE 105 Query: 133 RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGN 192 + + ++ ++G ++ + + + + A +C N Sbjct: 106 QMAGRLATVLKNAGANAQNVKQMR-RSTASGQTGDLEVISEALVVKTTRC----TINDPN 160 Query: 193 AKGNRNWT---NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 + + GCA QNNLA V P DL + + D SI+RY + Sbjct: 161 QLMVKPYEAIGTLGCATQNNLAMIVAEPRDLIQAKALDGADGVAAVNSIERYHK 214 >gi|323493502|ref|ZP_08098624.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546] gi|323312325|gb|EGA65467.1| hypothetical protein VIBR0546_14315 [Vibrio brasiliensis LMG 20546] Length = 206 Score = 52.2 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 11/149 (7%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + + I+ F E+ K + V L+ SA + +++ I +++I+ GI ++I Sbjct: 44 LSSKQSEGIQQFFER-KGLAYGVKVKLV----SYSAIGKSSLEQIEQLLIAQGIAANNIQ 98 Query: 154 ERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN-RNWTNYGCAYQNNLAA 212 DV + S+ K KC + N + ++GCA LA Sbjct: 99 RVDSKEQSQGDVQILAESF---KVKQPKCHV--QKYSNNFLNRYKQHPSFGCANSVALAQ 153 Query: 213 QVVNPLDLFSPRMVTPPDAEQRDKSIQRY 241 V NP DL + P + + SI+ Y Sbjct: 154 MVANPKDLVVGEKLGPTNGAKAVSSIEGY 182 >gi|326797328|ref|YP_004315148.1| pilus biogenesis CpaD-related protein [Marinomonas mediterranea MMB-1] gi|326548092|gb|ADZ93312.1| Pilus biogenesis CpaD-related protein [Marinomonas mediterranea MMB-1] Length = 224 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 16/162 (9%) Query: 92 GEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSS 151 G +K D + L S+ V+ L + + + ++ ++S G+ S Sbjct: 55 GSLKKSALDGLNALLRNQGRLSSQVIRLQPYTDKGNVFASH-----LKDSLLSLGVQESK 109 Query: 152 ISERI--YDA--------DYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 + Y A + D + L+ A C + + + Sbjct: 110 LKILPIQYQATTIKPDLENDKQDKWDLSLTSEAMVVVTKDCSI-EDSQAWSVHSYESIGT 168 Query: 202 YGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 GCA + N+A V +P DL R + D +++ RY + Sbjct: 169 LGCANRANIAQMVSDPRDLIRGRTLDDADGVHAVEAMTRYHE 210 >gi|298294453|gb|ADI75483.1| putative lipoprotein [Sinorhizobium fredii] Length = 54 Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 203 GCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 GC+ +NLA + +P DL R V P D ++ + YR Sbjct: 7 GCSTSHNLAVMINDPRDLLGNRFVKPSDGDRAAIPVTTYR 46 >gi|152994348|ref|YP_001339183.1| pilus biogenesis lipoprotein CpaD [Marinomonas sp. MWYL1] gi|150835272|gb|ABR69248.1| pilus (Caulobacter type) biogenesis lipoprotein CpaD [Marinomonas sp. MWYL1] Length = 214 Score = 48.4 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 201 NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 GCA ++N+A VVNP DL R + D +++RY + Sbjct: 158 TLGCANRSNIARMVVNPRDLIRARTLDSADGINAVGAVKRYHE 200 >gi|78062905|ref|YP_372813.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383] gi|77970790|gb|ABB12169.1| hypothetical protein Bcep18194_B2056 [Burkholderia sp. 383] Length = 126 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRM--- 225 + + + A C L +A R +GCA +NLAA + P DL +P Sbjct: 33 IGFDGAHAVAPDCAKLMQPSHLVDAGFARPGVPFGCATYSNLAAMLARPEDLVAPVPYGG 92 Query: 226 ---VTPPDAEQR 234 T DA +R Sbjct: 93 ADAQTAADAVRR 104 >gi|313813485|gb|EFS51199.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL025PA1] Length = 862 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140 Q++++ G+ + + F+E + + ++ P TV + +++ + Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGTPR 100 Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174 I + +P ++ + Y A RL++ Sbjct: 101 YITGAAVPPEVVTPQDYSAWIARQNGPARLAFGR 134 >gi|90406749|ref|ZP_01214942.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3] gi|90312202|gb|EAS40294.1| hypothetical protein PCNPT3_01915 [Psychromonas sp. CNPT3] Length = 211 Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 174 ASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQ 233 + + A C +D + N+GCA N LA + NP +L + P + + Sbjct: 121 SYRALARHC-QAQKDASIILNNFKRNPNFGCANSNALALMIANPRELLRSATLAPMEGRK 179 Query: 234 RDKSIQRY 241 I+ Y Sbjct: 180 AVSIIESY 187 >gi|83720007|ref|YP_442979.1| lipoprotein [Burkholderia thailandensis E264] gi|167581960|ref|ZP_02374834.1| hypothetical lipoprotein [Burkholderia thailandensis TXDOH] gi|167620124|ref|ZP_02388755.1| hypothetical lipoprotein [Burkholderia thailandensis Bt4] gi|257139203|ref|ZP_05587465.1| lipoprotein [Burkholderia thailandensis E264] gi|83653832|gb|ABC37895.1| hypothetical lipoprotein [Burkholderia thailandensis E264] Length = 139 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235 A C + +A R ++GCA NLAA + P DL +P + DA Sbjct: 55 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYSGADAALGA 114 Query: 236 KSIQRY 241 +++RY Sbjct: 115 SAVRRY 120 >gi|167841782|ref|ZP_02468466.1| hypothetical lipoprotein [Burkholderia thailandensis MSMB43] Length = 139 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235 A C + +A R ++GCA NLAA + P DL +P DA Sbjct: 55 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 114 Query: 236 KSIQRY 241 +++RY Sbjct: 115 SAVRRY 120 >gi|126452011|ref|YP_001066151.1| putative lipoprotein [Burkholderia pseudomallei 1106a] gi|167911032|ref|ZP_02498123.1| putative lipoprotein [Burkholderia pseudomallei 112] gi|226196379|ref|ZP_03791961.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9] gi|242317370|ref|ZP_04816386.1| putative lipoprotein [Burkholderia pseudomallei 1106b] gi|254297712|ref|ZP_04965165.1| putative lipoprotein [Burkholderia pseudomallei 406e] gi|126225653|gb|ABN89193.1| putative lipoprotein [Burkholderia pseudomallei 1106a] gi|157807160|gb|EDO84330.1| putative lipoprotein [Burkholderia pseudomallei 406e] gi|225931596|gb|EEH27601.1| putative lipoprotein [Burkholderia pseudomallei Pakistan 9] gi|242140609|gb|EES27011.1| putative lipoprotein [Burkholderia pseudomallei 1106b] Length = 137 Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235 A C + +A R ++GCA NLAA + P DL +P DA Sbjct: 53 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 112 Query: 236 KSIQRY 241 +++RY Sbjct: 113 SAVRRY 118 >gi|53719430|ref|YP_108416.1| putative lipoprotein [Burkholderia pseudomallei K96243] gi|76808779|ref|YP_333436.1| putative lipoprotein [Burkholderia pseudomallei 1710b] gi|121601162|ref|YP_993005.1| putative lipoprotein [Burkholderia mallei SAVP1] gi|124386034|ref|YP_001026337.1| putative lipoprotein [Burkholderia mallei NCTC 10229] gi|126439464|ref|YP_001058909.1| putative lipoprotein [Burkholderia pseudomallei 668] gi|126448960|ref|YP_001080389.1| putative lipoprotein [Burkholderia mallei NCTC 10247] gi|134282244|ref|ZP_01768949.1| putative lipoprotein [Burkholderia pseudomallei 305] gi|167919048|ref|ZP_02506139.1| lipoprotein, putative [Burkholderia pseudomallei BCC215] gi|217421405|ref|ZP_03452909.1| putative lipoprotein [Burkholderia pseudomallei 576] gi|237812166|ref|YP_002896617.1| putative lipoprotein [Burkholderia pseudomallei MSHR346] gi|254178529|ref|ZP_04885184.1| putative lipoprotein [Burkholderia mallei ATCC 10399] gi|254179871|ref|ZP_04886470.1| putative lipoprotein [Burkholderia pseudomallei 1655] gi|254188723|ref|ZP_04895234.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237] gi|254197664|ref|ZP_04904086.1| putative lipoprotein [Burkholderia pseudomallei S13] gi|254261709|ref|ZP_04952763.1| putative lipoprotein [Burkholderia pseudomallei 1710a] gi|254358539|ref|ZP_04974812.1| putative lipoprotein [Burkholderia mallei 2002721280] gi|52209844|emb|CAH35816.1| putative lipoprotein [Burkholderia pseudomallei K96243] gi|76578232|gb|ABA47707.1| putative lipoprotein [Burkholderia pseudomallei 1710b] gi|121229972|gb|ABM52490.1| lipoprotein, putative [Burkholderia mallei SAVP1] gi|124294054|gb|ABN03323.1| putative liporotein [Burkholderia mallei NCTC 10229] gi|126218957|gb|ABN82463.1| putative lipoprotein [Burkholderia pseudomallei 668] gi|126241830|gb|ABO04923.1| putative liporotein [Burkholderia mallei NCTC 10247] gi|134246282|gb|EBA46371.1| putative lipoprotein [Burkholderia pseudomallei 305] gi|148027666|gb|EDK85687.1| putative lipoprotein [Burkholderia mallei 2002721280] gi|157936402|gb|EDO92072.1| putative lipoprotein [Burkholderia pseudomallei Pasteur 52237] gi|160699568|gb|EDP89538.1| putative lipoprotein [Burkholderia mallei ATCC 10399] gi|169654405|gb|EDS87098.1| putative lipoprotein [Burkholderia pseudomallei S13] gi|184210411|gb|EDU07454.1| putative lipoprotein [Burkholderia pseudomallei 1655] gi|217395147|gb|EEC35165.1| putative lipoprotein [Burkholderia pseudomallei 576] gi|237504103|gb|ACQ96421.1| putative lipoprotein [Burkholderia pseudomallei MSHR346] gi|254220398|gb|EET09782.1| putative lipoprotein [Burkholderia pseudomallei 1710a] Length = 137 Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235 A C + +A R ++GCA NLAA + P DL +P DA Sbjct: 53 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 112 Query: 236 KSIQRY 241 +++RY Sbjct: 113 SAVRRY 118 >gi|167902786|ref|ZP_02489991.1| putative lipoprotein [Burkholderia pseudomallei NCTC 13177] Length = 115 Score = 44.5 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 177 PSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRD 235 A C + +A R ++GCA NLAA + P DL +P DA Sbjct: 31 ARAPDCAALEQRSQMIDAGRARPGVSFGCATYGNLAAMLARPADLVAPLPYAGADAALGA 90 Query: 236 KSIQRY 241 +++RY Sbjct: 91 SAVRRY 96 >gi|50843080|ref|YP_056307.1| putative type III restriction enzyme [Propionibacterium acnes KPA171202] gi|50840682|gb|AAT83349.1| putative type III restriction enzyme [Propionibacterium acnes KPA171202] gi|315106920|gb|EFT78896.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL030PA1] Length = 862 Score = 43.4 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140 Q++++ G+ + + F+E + + ++ P TV + +++ + Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGSSR 100 Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174 I S +P ++ + Y A ++L++ Sbjct: 101 YITGSALPPEVVTPQDYSAWIARQNGPVQLAFGR 134 >gi|167590423|ref|ZP_02382811.1| hypothetical protein BuboB_34117 [Burkholderia ubonensis Bu] Length = 117 Score = 42.2 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 202 YGCAYQNNLAAQVVNPLDLFSP 223 +GCA NLAA + P DL +P Sbjct: 56 FGCATYRNLAAMLARPEDLVAP 77 >gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1] gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1] Length = 632 Score = 41.8 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 12/104 (11%) Query: 96 YPIHDTIRGFLEKYK---NDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152 GF ++ + A +L +L+P A++ A+ + + G+P Sbjct: 96 GRKRAGKGGFSLTWRDLEREGAGLLLILLPD--APDATLSAALARMEAHARTGGLPGYVA 153 Query: 153 SERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGN 196 R Y + R++ A G P N Sbjct: 154 LVRRYRPGDAARLA--RIADMAMTA-----GLRPVVTGDVLYHN 190 >gi|297627293|ref|YP_003689056.1| type III restriction enzyme [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923058|emb|CBL57642.1| Putative type III restriction enzyme [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 857 Score = 41.4 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 78 KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKD 137 V+Q++++ G+ + + F+E + + ++ P TV + +++ Sbjct: 45 DVQQVLNLATGVGKTYL-------MTAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPG 97 Query: 138 IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174 + I S +P ++ + Y A LS+ Sbjct: 98 SSRFITGSPVPPEVVTPQDYSAWIARTNGAAMLSFGR 134 >gi|162147492|ref|YP_001601953.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786069|emb|CAP55651.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] Length = 500 Score = 41.1 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 198 NWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242 +W G Q+N+ AQV P DL R + DA + ++QR+R Sbjct: 9 HWRPLG-TNQSNIEAQVERPQDLVHGRPLGDADAHEAAVAVQRWR 52 >gi|167836688|ref|ZP_02463571.1| putative lipoprotein [Burkholderia thailandensis MSMB43] Length = 130 Score = 41.1 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 202 YGCAYQNNLAAQVVNPLDLFSPRM 225 +GCA +NLA + P DL +P+ Sbjct: 72 FGCATYSNLAVMLARPADLIAPQP 95 >gi|172041474|ref|YP_001801188.1| putative DNA restriction-modification system, restriction enzyme [Corynebacterium urealyticum DSM 7109] gi|171852778|emb|CAQ05754.1| putative DNA restriction-modification system, restriction enzyme [Corynebacterium urealyticum DSM 7109] Length = 876 Score = 40.7 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 36/94 (38%), Gaps = 7/94 (7%) Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140 Q++++ G+ + + F+E + + ++ P TV + +++ + Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGAPR 100 Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSYFA 174 I S +P ++ + Y A L++ Sbjct: 101 YITGSAVPPEVVTPQDYSAWVARQNGAAELAFGR 134 >gi|146338603|ref|YP_001203651.1| amidase [Bradyrhizobium sp. ORS278] gi|146191409|emb|CAL75414.1| amidase [Bradyrhizobium sp. ORS278] Length = 501 Score = 39.9 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL-LIPSPTVSSAS- 130 PI + + + ++AG + + + A+ L + ++P ++ + Sbjct: 232 PITRTVADNALMLEVMAGPDGLDPRQRGAAAQPYTQALSQGAAGLRIGIVPEGFGTAGAE 291 Query: 131 --IRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 + V++ + + G + +S A I L Sbjct: 292 SEVDDRVREAAGRLQAKGADIREVSV-PLHAAGAAIWTPIFL 332 >gi|239928195|ref|ZP_04685148.1| cyclase [Streptomyces ghanaensis ATCC 14672] gi|291436525|ref|ZP_06575915.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC 14672] gi|291339420|gb|EFE66376.1| germacradienol/germacrene D synthase [Streptomyces ghanaensis ATCC 14672] Length = 729 Score = 39.9 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 43/158 (27%), Gaps = 39/158 (24%) Query: 47 LFFLLLFYGTSALAYYDEGSDYRDR--YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRG 104 + L F+G S D +D + + ++P +A + + Sbjct: 247 VLVLETFFGCSTQEAADTVNDVLTSRLHQF---EHTAFTEVPAVALEKGLTPDQVAAVAA 303 Query: 105 FL---EKYKNDSA-----------------SVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + + +++ + +++ D+R ++ + Sbjct: 304 YAKGLQDWQSGGHEWHLRSSRYMNQGARTTGPWAAPVGPGGPGTSAA-----DVRALLAA 358 Query: 145 SGIPV---------SSISERIYDADYGMDVDTIRLSYF 173 G P + + Y + IR+ + Sbjct: 359 PGAPGAPSAPWRRTRAHTHVPYQKVGPSLIPDIRMPFP 396 >gi|209515952|ref|ZP_03264813.1| conserved hypothetical protein [Burkholderia sp. H160] gi|209503610|gb|EEA03605.1| conserved hypothetical protein [Burkholderia sp. H160] Length = 124 Score = 39.9 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%) Query: 202 YGCAYQNNLAAQVVNPLDLFSPRM------VTPPDAEQR 234 +GCA NLA + P DL +P T A +R Sbjct: 66 FGCATLTNLAVMLARPEDLIAPLPYAGSDVTTAAGAVRR 104 >gi|171320619|ref|ZP_02909639.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gi|171094132|gb|EDT39219.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 126 Score = 39.9 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214 + + + + +C L +A R +GCA NLA + Sbjct: 22 PPPINLPDARA---IGFDGVRAVPPECATLMQPSHLVDAGFGRPGVPFGCATYTNLATML 78 Query: 215 VNPLDLFSP 223 P DL +P Sbjct: 79 ARPEDLVAP 87 >gi|319941901|ref|ZP_08016222.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis 3_1_45B] gi|319804554|gb|EFW01424.1| hypothetical protein HMPREF9464_01441 [Sutterella wadsworthensis 3_1_45B] Length = 207 Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 30/158 (18%) Query: 116 VLFLLIPSPTVSSASIR----------RAVKDIRKI---IISSGIPVSSISERIYDADYG 162 + +PS + R ++ +++ + Y G Sbjct: 31 SVTTTVPSGRAPAFEARADQVVVIDPADVAAELHTQVEPLLAETAGRDRVIVVSYSLAPG 90 Query: 163 MDVDTIRLSYFASKPSAGKCGFWPED----MLGNAKGNRN------WTN-------YGCA 205 + L + + + G D + W N + A Sbjct: 91 DETLRSVLDFIKMRTAPGDVVKVERDFIAHLGLAVTVRDPKVSAYRWWNAQAVSDNFAHA 150 Query: 206 YQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 NLA Q P DL +PR + P+ + ++ RY++ Sbjct: 151 TARNLAQQAAVPSDLETPRALGDPNPQAAIGAVDRYQR 188 >gi|116250165|ref|YP_766003.1| acyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254813|emb|CAK05887.1| putative acyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 265 Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 19/110 (17%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + ++ + I G + + +L P T R + + Sbjct: 112 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGT--------TSDGNRLLEVK 157 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189 S + ++ Y + V + ++Y A WP D+ Sbjct: 158 SSLFGAAAMAVPYSPTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 207 >gi|38234464|ref|NP_940231.1| hypothetical protein DIP1894 [Corynebacterium diphtheriae NCTC 13129] gi|38200727|emb|CAE50428.1| Hypothetical protein DIP1894 [Corynebacterium diphtheriae] Length = 865 Score = 39.5 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140 Q++++ G+ + + F+E + + ++ P TV + +++ + Sbjct: 48 QVLNLATGVGKTYL-------MAAFVEYLRRQGVGNVVIVTPGKTVQAKTVQNFTPGSPR 100 Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLSY 172 I S +P ++ + Y A +LS+ Sbjct: 101 YITGSVVPPEVVTPQDYSAWVARQNGAAQLSF 132 >gi|315505262|ref|YP_004084149.1| beta-ketoacyl synthase [Micromonospora sp. L5] gi|315411881|gb|ADU09998.1| Beta-ketoacyl synthase [Micromonospora sp. L5] Length = 6765 Score = 39.5 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 11/86 (12%) Query: 86 PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR----RAVKDIRKI 141 P+ G G + +TI F + + + ++ ++A A++++R++ Sbjct: 6186 PVAVGIGRLDP---ETIEAFAAELTRRAPGSVSFVVVEAASNAAGGVPVEPAALRELRRV 6242 Query: 142 IISSGIP----VSSISERIYDADYGM 163 + G+P S + + Sbjct: 6243 TAAHGVPLVLDASRVVDNAVQLAGPG 6268 >gi|115358172|ref|YP_775310.1| hypothetical protein Bamb_3422 [Burkholderia ambifaria AMMD] gi|115283460|gb|ABI88976.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 127 Score = 39.1 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 4/69 (5%) Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQV 214 + + + + C L +A R +GCA NLA + Sbjct: 22 PPPINLPDARA---IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATML 78 Query: 215 VNPLDLFSP 223 P DL +P Sbjct: 79 ARPEDLVAP 87 >gi|170703888|ref|ZP_02894571.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gi|172062960|ref|YP_001810611.1| hypothetical protein BamMC406_3929 [Burkholderia ambifaria MC40-6] gi|170131203|gb|EDS99847.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gi|171995477|gb|ACB66395.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6] Length = 127 Score = 39.1 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 170 LSYFASKPSAGKCG-FWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223 + + + C L +A R +GCA NLA + P DL +P Sbjct: 33 IGFDGVRAVPPDCAALMQPSHLVDAGFGRPGVPFGCATYTNLATMLARPEDLVAP 87 >gi|61806229|ref|YP_214588.1| fiber [Prochlorococcus phage P-SSM4] gi|61563773|gb|AAX46828.1| fiber [Prochlorococcus phage P-SSM4] Length = 1318 Score = 39.1 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 44/160 (27%) Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156 ++GF + D I ++++ G +S+ S Sbjct: 658 TRVQGFAVGARQDGTG---------------ASAIADKINCLLVAQGATDASVQSASISP 702 Query: 157 YDADYGMDVDTIR---LSYFA----SKPSAGKCGFW-------PEDMLGNAKGNRNWT-- 200 Y + L Y A AG G W ++ N + Sbjct: 703 YGPSVSGLAAGVVGSPLQYDANTYTISGVAGSVGGWYLSVSSVNNEIYTTLSTNTTYNTV 762 Query: 201 NYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 N+ ++ +P DL + I + Sbjct: 763 NF---TPTTFLKRIPDPRDL-----QDRTYRVR--YVIDK 792 >gi|50954943|ref|YP_062231.1| NAD synthetase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648719|sp|Q6AER9|NADE_LEIXX RecName: Full=NH(3)-dependent NAD(+) synthetase gi|50951425|gb|AAT89126.1| NH3-dependent NAD+ synthetase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 279 Score = 39.1 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISER-IYDADYG 162 FL +Y + + F+L S S+ R + + + G+ I+ R Y Sbjct: 29 DFLVRYVRAAGASGFVLGVSGGQDSSLAGRLCQLAVERLAEQGVAAEFIAVRLPYAVQND 88 Query: 163 MDVDTIRLSYFA 174 D + LS+ Sbjct: 89 EDDAQLALSFIR 100 >gi|303256903|ref|ZP_07342917.1| heme ABC exporter, ATP-binding protein CcmA [Burkholderiales bacterium 1_1_47] gi|302860394|gb|EFL83471.1| heme ABC exporter, ATP-binding protein CcmA [Burkholderiales bacterium 1_1_47] Length = 231 Score = 38.7 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 6/81 (7%) Query: 72 YPILMRKVEQIVDI-----PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 +P+ + + + + + + Y + A L P + Sbjct: 110 HPVTKEQADHALAMVGLEGFEDHYTRHLSQGQRRRV-ALARLYLSRHAGFWVLDEPFTAL 168 Query: 127 SSASIRRAVKDIRKIIISSGI 147 ++ I + + GI Sbjct: 169 DVKAVANLANLIAEHVNEGGI 189 >gi|197123523|ref|YP_002135474.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter sp. K] gi|196173372|gb|ACG74345.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter sp. K] Length = 335 Score = 38.7 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 12/125 (9%) Query: 78 KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134 + + AGRG+ T GF + + L P T S R Sbjct: 68 DAAYFLVHGMAAGRGDYVEEERRTAAGFARAAERAGTGRIVYLGGVAPQGTPSRHLASRL 127 Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187 + +++ + +P + + +R + C W Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185 Query: 188 DMLGN 192 D++G Sbjct: 186 DVVGA 190 >gi|328871044|gb|EGG19416.1| OTU domain-containing protein [Dictyostelium fasciculatum] Length = 592 Score = 38.7 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 5/65 (7%) Query: 150 SSISERIYDADYGMDVDT-IRLSYFASKPSAGKCGFW----PEDMLGNAKGNRNWTNYGC 204 SI D I LSY S CG W P D+ N+ + N Sbjct: 169 RSIFISSPQPLAYADAQPHIILSYQRYLFSLLHCGHWTLQGPSDLEKLNYSNKIYENLQI 228 Query: 205 AYQNN 209 Q N Sbjct: 229 LVQKN 233 >gi|89897655|ref|YP_521142.1| hypothetical protein DSY4909 [Desulfitobacterium hafniense Y51] gi|219670784|ref|YP_002461219.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Desulfitobacterium hafniense DCB-2] gi|89337103|dbj|BAE86698.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541044|gb|ACL22783.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Desulfitobacterium hafniense DCB-2] Length = 416 Score = 38.0 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 13/90 (14%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 PI + ++D+ + + I F + + + L++ P T + Sbjct: 38 PIRIDDAPHLLDVDV----------MCQVIGAFGASVRREGS-QLYINTPEITSLE-APH 85 Query: 133 RAVKDIRKIIISSG-IPVSSISERIYDADY 161 V +R I++ G + + RI Sbjct: 86 DLVSQMRASIVTMGPVLARTGRVRISHPGG 115 >gi|218682220|ref|ZP_03529821.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein [Rhizobium etli CIAT 894] Length = 265 Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 19/110 (17%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + ++ + I G + + +L P T R + + Sbjct: 112 VFVVREEKRRTGHQANEIAG------RMADGEIVVLFPEGT--------TSDGNRLLEVK 157 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189 S + ++ Y + V + ++Y A WP D+ Sbjct: 158 SSLFGAAAMAVPYSPTGTVVVQPLAIAYTRVHGIAMGRYHRPLAAWPGDI 207 >gi|87311447|ref|ZP_01093567.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645] gi|87285859|gb|EAQ77773.1| endo-1,4-beta-xylanase B [Blastopirellula marina DSM 3645] Length = 284 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 6/66 (9%) Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161 + F+ +Y++ + +RA++ +R G+ I + A Sbjct: 76 VSAFVVEYRHRGRGY------AHPAPIQDAQRAIRTVRARAEEFGVSPDKIGVMGFSAGG 129 Query: 162 GMDVDT 167 + Sbjct: 130 HLASTA 135 >gi|330998847|ref|ZP_08322574.1| heme ABC exporter, ATP-binding protein CcmA [Parasutterella excrementihominis YIT 11859] gi|329576061|gb|EGG57580.1| heme ABC exporter, ATP-binding protein CcmA [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 8/81 (9%), Positives = 22/81 (27%), Gaps = 6/81 (7%) Query: 72 YPILMRKVEQIVDI-----PLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 +P+ + + + + + + Y + A L P + Sbjct: 110 HPVTKEQADHALAMVGLEGFEDHYTRHLSQGQRRRV-ALARLYLSRHAGFWVLDEPFTAL 168 Query: 127 SSASIRRAVKDIRKIIISSGI 147 ++ I + + GI Sbjct: 169 DVKAVANLANLIVEHVNEGGI 189 >gi|145558866|sp|Q9BZQ2|SHP1L_HUMAN RecName: Full=SHC SH2 domain-binding protein 1-like protein Length = 725 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 16/110 (14%) Query: 86 PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT--------VSSASIRRAVK 136 P+ +GRG K+P + G L +++ S +P+ + S Sbjct: 49 PIGQSGRGREKWPTAASALGLLRRWRRASK----ASVPADSFRTISPDRRGEKSASAVSG 104 Query: 137 DIRKI--IISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183 D + + IPV S+ +T RL A G Sbjct: 105 DTAAATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154 >gi|12620205|gb|AAG60617.1|AF288398_1 C1orf14 [Homo sapiens] Length = 725 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 16/110 (14%) Query: 86 PLL-AGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT--------VSSASIRRAVK 136 P+ +GRG K+P + G L +++ S +P+ + S Sbjct: 49 PIGQSGRGREKWPTAASALGLLRRWRRASK----ASVPADSFRTISPDRRGEKSASAVSG 104 Query: 137 DIRKI--IISSGIPVSSISERIYDADYGMDVDTIRLSYFAS-KPSAGKCG 183 D + + IPV S+ +T RL A G Sbjct: 105 DTAAATTLKGTAIPVRSVVASPRPVKGKAGRETARLRLQRLPAAQAEDTG 154 >gi|220918321|ref|YP_002493625.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956175|gb|ACL66559.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans 2CP-1] Length = 335 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 12/125 (9%) Query: 78 KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134 + + AGRG+ T GF+ + + L P T S R Sbjct: 68 DAAYFLVHGMAAGRGDYVEEERRTAAGFVRAAERAGTGRIVYLGGVAPQGTPSRHLASRL 127 Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187 + +++ + +P + + +R + C W Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185 Query: 188 DMLGN 192 D++G Sbjct: 186 DVVGA 190 >gi|320529880|ref|ZP_08030957.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis F0399] gi|320137898|gb|EFW29803.1| thiol reductant ABC exporter, CydC subunit [Selenomonas artemidis F0399] Length = 549 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134 ++R + + +D PL + + L A VL L P+ +++ R Sbjct: 458 VIRALPRGLDEPLGENAARLSGGQRSRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 515 Query: 135 VKDIRKIIISSG 146 ++ I + + G Sbjct: 516 IRAILTELSAEG 527 >gi|121609321|ref|YP_997128.1| FAD linked oxidase domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121553961|gb|ABM58110.1| FAD linked oxidase domain protein [Verminephrobacter eiseniae EF01-2] Length = 496 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 99 HDTIRGFLEKYK-NDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIY 157 + G+L+ ++ +++PS T A+ R +R +++ G + S Sbjct: 20 EAEVAGYLQDWRGRYGGPAACVVLPSCTQQVAAAVRIAGRLRVPVLAQG---GNTSLSGG 76 Query: 158 DADYGMDVDTIRLSYFASKPS 178 + + ++ + Sbjct: 77 SVPWPDGAAPMLINLARMRAV 97 >gi|86159448|ref|YP_466233.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775959|gb|ABC82796.1| NAD-dependent epimerase/dehydratase [Anaeromyxobacter dehalogenans 2CP-C] Length = 335 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 12/125 (9%) Query: 78 KVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTVSSASIRRA 134 + + AGRG+ T GF+ + L P T S R Sbjct: 68 DAAYFLVHGMAAGRGDYVEEERRTAAGFVRAAARAGTGRIVYLGGVAPQGTPSRHLASRL 127 Query: 135 VKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASK-------PSAGKCGFWPE 187 + +++ + +P + + +R + C W Sbjct: 128 A--VGEVLRAGRVPALELRASMIVGAGSASWQVVRDLAMRLPVMLLPAWARSRTCPVWIG 185 Query: 188 DMLGN 192 D++G Sbjct: 186 DVVGA 190 >gi|313895426|ref|ZP_07828983.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976321|gb|EFR41779.1| thiol reductant ABC exporter, CydC subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 548 Score = 37.6 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA 134 ++R + + +D PL + + + L A VL L P+ +++ R Sbjct: 457 VVRALPRGLDEPLGENAARLSGGQRNRLLTALA--LASDAPVLLLDEPTAGLNAELGERL 514 Query: 135 VKDIRKIIISSG 146 ++ I + + G Sbjct: 515 IRAILTALSAEG 526 >gi|254409849|ref|ZP_05023630.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] gi|196183846|gb|EDX78829.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] Length = 325 Score = 37.6 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRA---VKDIRKIIISSGIPVSSISERI 156 D I + Y+ + L ++ P + + DIR +++ G+P S I Sbjct: 157 DRILYAAQLYRQSGNNPLVVVSAGPRPNLQGNQDQIVEANDIRSLLVQFGVPQSRIVLEP 216 >gi|326782772|ref|YP_004323170.1| fiber [Prochlorococcus phage P-RSM4] gi|310004031|gb|ADO98425.1| fiber [Prochlorococcus phage P-RSM4] Length = 1320 Score = 37.6 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 42/159 (26%) Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156 ++GF + D I ++++ G +++ S Sbjct: 658 SRVQGFTVGARQDGTGN---------------SAIADKINCLLVAQGASSATVQSASISP 702 Query: 157 YDADYGMDVDTIR---LSY----FASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNN 209 Y + L Y + AG G W + ++ N + Q N Sbjct: 703 YGPSVSGLAAGVTGSPLQYDSNTYTINGVAGSVGGWY--LSVSSTNNSIYEALANNTQYN 760 Query: 210 --------LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 ++ +P DL + I + Sbjct: 761 TVSFTPTTFLKRIPDPRDL-----QDRTYRVR--YVIDK 792 >gi|320165665|gb|EFW42564.1| tRNA dihydrouridine synthase Dus2 [Capsaspora owczarzaki ATCC 30864] Length = 503 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 13/102 (12%) Query: 55 GTSALAYYDEGSDYRDR---YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKN 111 G SALA + + R R +P +++ + + IP++A G + HD I F ++ Sbjct: 153 GVSALAVHCRLTHERPREPGHPDMLKPIVDALSIPVIANGGSLDIVSHDDIEAFRQR--- 209 Query: 112 DSASVLFLLIPSPTVSSASIRRAVK-----DIRKIIISSGIP 148 +++ ++ S+ R ++ + ++ +GI Sbjct: 210 --TGCASVMVARAAQNNPSVFRPEPLVPRLEMARQLLRTGIE 249 >gi|284041570|ref|YP_003391910.1| N-acetylmuramoyl-L-alanine amidase family 2 [Conexibacter woesei DSM 14684] gi|283945791|gb|ADB48535.1| N-acetylmuramoyl-L-alanine amidase family 2 [Conexibacter woesei DSM 14684] Length = 552 Score = 37.2 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 2/96 (2%) Query: 83 VDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK-I 141 VD G + I + + S V + + + + + A+ + Sbjct: 229 VDRFGTVYEGRVGGVEQPVIGAHAGGWNSLSTGVAVIGSFTGSRPPQAAQDALTQVLAWK 288 Query: 142 IISSGIPVSSISERIYDADY-GMDVDTIRLSYFASK 176 + +G+P I R+++ Sbjct: 289 LQLAGVPAQGTIGEISPGGAENRWSSGTRVAFQRIA 324 >gi|330818051|ref|YP_004361756.1| NAD dependent epimerase/dehydratase family protein [Burkholderia gladioli BSR3] gi|327370444|gb|AEA61800.1| NAD dependent epimerase/dehydratase family protein [Burkholderia gladioli BSR3] Length = 353 Score = 37.2 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 11/105 (10%), Positives = 22/105 (20%), Gaps = 10/105 (9%) Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDI 138 Q++ + G I +++ S + Sbjct: 75 ARQVLLLAPPQPSGPDDRRTRALIAALGARHRARG----------GPARSGAAPVGRMRA 124 Query: 139 RKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCG 183 G + +RL Y ++ G CG Sbjct: 125 LAGAWRRGTDRGQAAPGAARIVPEGPSAPLRLVYASTSGVYGDCG 169 >gi|294142592|ref|YP_003558570.1| hypothetical protein SVI_3821 [Shewanella violacea DSS12] gi|293329061|dbj|BAJ03792.1| hypothetical protein [Shewanella violacea DSS12] Length = 205 Score = 37.2 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 10/114 (8%) Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL---IPSPTV--SSASIRR 133 E+ + + + L N + L L+ P + + A +R Sbjct: 73 QERTKVVMFDFDSSHLTNSEVGKVSELLGDLMNLPEARLLLIGDTSPEGSDSYNRALAQR 132 Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPE 187 V I+++ G P SI + YD +I G W E Sbjct: 133 RVDTIQELAKEVGFPTQSIISQTYDQSD-RTPTSISGREHRLIAV----GQWQE 181 >gi|303281901|ref|XP_003060242.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457713|gb|EEH55011.1| predicted protein [Micromonas pusilla CCMP1545] Length = 728 Score = 37.2 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 121 IPSPTVSSASIRRAVKDI---RKIIISSGIPVSSISERIYDADYGMDVDTIR 169 PS + + A+ RRA+ DI ++ ++G+ S S R Sbjct: 106 TPSRSPNGAAARRALTDIANAQRRASAAGVRSRSPSVSALPLTPTSASAPRR 157 >gi|240170624|ref|ZP_04749283.1| acyltransferase family protein [Mycobacterium kansasii ATCC 12478] Length = 928 Score = 36.8 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 12/119 (10%) Query: 69 RDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS 128 R+ +P + + G + + F ++ A L ++ + Sbjct: 562 RNLHPAELEEA-----------VGNLTGVRKGCVAVFASADRSGGAERLVVVAETRLTED 610 Query: 129 ASIRRAVKDIRKIIIS-SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186 A+ +I + G+P + IR + AG+ G P Sbjct: 611 AARAALRSEIASTTVDLLGVPPDDVVLAPPRTVLKTSSGKIRRAASRQLYEAGRIGARP 669 >gi|254236387|ref|ZP_04929710.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719] gi|126168318|gb|EAZ53829.1| hypothetical protein PACG_02367 [Pseudomonas aeruginosa C3719] Length = 297 Score = 36.8 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +A+ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186 >gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans] gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Flags: Precursor gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] Length = 357 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 8/90 (8%) Query: 110 KNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169 + L + +P + + ++R ++ GI Y + + Sbjct: 60 RMRGRKTLLIELPEDSAREKEAEMSPGEMRTELLKRGIN-------PYKEAQPRVWNEAQ 112 Query: 170 LSYFASKPSAGKCGFWPEDMLGNAKGNRNW 199 +++ + A PE+ N + Sbjct: 113 VTFQSIYGIADPYVP-PENPGSFTDVNNKF 141 >gi|326784408|ref|YP_004324638.1| fiber [Synechococcus phage S-SSM5] gi|310003639|gb|ADO98035.1| fiber [Synechococcus phage S-SSM5] Length = 1320 Score = 36.8 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 42/159 (26%) Query: 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI---SERI 156 ++GF + D I ++++ G +++ S Sbjct: 658 SRVQGFTVGARQDGTGN---------------SAVADKINCLLVAQGASSATVQSASISP 702 Query: 157 YDADYGMDVDTIR---LSY----FASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNN 209 Y + L Y + AG G W + +A N + Q N Sbjct: 703 YGPSVSGLAAGVTGSPLQYDSATYTINGVAGSVGGWY--LSVSATNNSIYDALANNTQYN 760 Query: 210 --------LAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240 ++ +P DL + I + Sbjct: 761 TVSFTPTTFIKRIPDPRDL-----QDRTYRVR--YVIDK 792 >gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1] gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1] Length = 1178 Score = 36.8 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 11/106 (10%), Positives = 33/106 (31%), Gaps = 8/106 (7%) Query: 82 IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI 141 +D+P+L + + + + + + P+ A V+ + + Sbjct: 1045 TLDVPVLRSTQRLLGGVVKLAGALGVRSLRLAMAEPGSVAPAELPRVAEAAAYVRQVAPL 1104 Query: 142 IISSGIPVSSISERIYDADYGMDVD-----TIRLSYFASKPSAGKC 182 +G+ ++ + D +R++ A+ C Sbjct: 1105 AARAGL---ELTVEAFPECLLADTAGRRERPLRVAGSATAAEPAPC 1147 >gi|15598629|ref|NP_252123.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102967|ref|ZP_01366885.1| hypothetical protein PaerPA_01004036 [Pseudomonas aeruginosa PACS2] gi|218890367|ref|YP_002439231.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254242119|ref|ZP_04935441.1| hypothetical protein PA2G_02848 [Pseudomonas aeruginosa 2192] gi|9949573|gb|AAG06821.1|AE004764_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126195497|gb|EAZ59560.1| hypothetical protein PA2G_02848 [Pseudomonas aeruginosa 2192] gi|218770590|emb|CAW26355.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 297 Score = 36.8 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +A+ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186 >gi|296388050|ref|ZP_06877525.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 297 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +A+ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186 >gi|120603344|ref|YP_967744.1| hypothetical protein Dvul_2301 [Desulfovibrio vulgaris DP4] gi|120563573|gb|ABM29317.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4] Length = 256 Score = 36.4 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%) Query: 94 IKYPIHDTIRGF-LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152 + +RGF E + + L + SP ++ V DI +SG + + Sbjct: 19 LVMTRRPLLRGFSGESFISTGRPPLVV---SPASGLHAVGGGVTDI-SPATASGTASARV 74 Query: 153 SERIYDADYGMDVDT--IRLSYFASKPSAGKCGFWPEDMLGNAKG 195 +Y T RLS AG WP D+ + Sbjct: 75 WYALYAPSDNGQPTTDGRRLS--VILAEAGDQWQWPHDVSSGLRE 117 >gi|221134123|ref|ZP_03560428.1| 2-deoxy-D-gluconate 3-dehydrogenase [Glaciecola sp. HTCC2999] Length = 257 Score = 36.4 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178 + +P+ S + + K + SSGI V++I+ ++ D ++ + Y + Sbjct: 157 ITVPAYAASKGGVAQITKALANEWASSGIQVNAIAPGYFETDNTTNIRNDKDRYESITAR 216 Query: 179 AGKCGFW--PEDMLGNA 193 CG W PED+ G Sbjct: 217 I-PCGEWGKPEDLAGAT 232 >gi|116620655|ref|YP_822811.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076] gi|116223817|gb|ABJ82526.1| peptidase M23B [Candidatus Solibacter usitatus Ellin6076] Length = 456 Score = 36.4 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 3/86 (3%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165 + Y N L ++ P + + A ++ R + G P + Y D +V Sbjct: 142 AQHYINQGGMELAVMTPGGSWNEAGVKVGKYSFRSFALP-GHPEQRFAMFAYPWDLPDNV 200 Query: 166 DTIRLSYFASKPSAGKCGFWPEDMLG 191 + + + + + Sbjct: 201 TPM--VFARNAAGTEATAQFWFKLFP 224 >gi|319949468|ref|ZP_08023527.1| hydrolase [Dietzia cinnamea P4] gi|319436872|gb|EFV91933.1| hydrolase [Dietzia cinnamea P4] Length = 693 Score = 36.4 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 25/127 (19%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-TVSS-------------- 128 ++P G + + + ++ + +L+P ++ Sbjct: 399 ELPFAEGDRGGNPAVKALTDVVIPAWLREAHAPKDVLLPVGLVPNAVQRVYPFHLVRLGT 458 Query: 129 ---------ASIRRAVKDIRKIIISSGIPVSSISERIYDAD-YGMDVDTIRLSYFASKPS 178 ++ ++ R + G+ ++ + Y S + Sbjct: 459 HYLFTLGFEPTVVAGLRLRRTLAAELGVAEDYVTVQGYSNSYGHYVTTPEEYSAQNYEGG 518 Query: 179 AGKCGFW 185 A G W Sbjct: 519 ATIFGPW 525 >gi|116051453|ref|YP_789714.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586674|gb|ABJ12689.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 297 Score = 36.4 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +A+ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186 >gi|313108789|ref|ZP_07794776.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|310881278|gb|EFQ39872.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 297 Score = 36.4 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +A+ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKAAAASVALGELA 186 >gi|239621824|ref|ZP_04664855.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515015|gb|EEQ54882.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 321 Score = 36.4 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 100 DTIRGFLEKYKNDSASV---LFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSIS--E 154 D +RG E ++ A + + + + P +RR IR +P SI Sbjct: 79 DDLRGLGECVRSSLAGMSPDVQVKVREPVRDEGLVRRWRISIRTAAQRRDLPSQSIKLEV 138 Query: 155 RIYDADYGMDVDTIRLSYFASKPSAG 180 A +R++Y + AG Sbjct: 139 ASVPAHEP-QTRPVRVNYPSVSAIAG 163 >gi|242060302|ref|XP_002451440.1| hypothetical protein SORBIDRAFT_04g002055 [Sorghum bicolor] gi|241931271|gb|EES04416.1| hypothetical protein SORBIDRAFT_04g002055 [Sorghum bicolor] Length = 439 Score = 36.4 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKD 137 ++ D PL+ G + RG + S +FL S + + +S V D Sbjct: 70 APEVRDKPLIDLGGRLSQSQDADARGLAGVAVHHSTGRVFLSYYSASPNGSSAASLVVD 128 >gi|322833415|ref|YP_004213442.1| aminotransferase class I and II [Rahnella sp. Y9602] gi|321168616|gb|ADW74315.1| aminotransferase class I and II [Rahnella sp. Y9602] Length = 401 Score = 36.4 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 180 GKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVV---NPLDLFSPRMVTPPDAEQRDK 236 G CG P+D++ N N N G AA V P DL R ++RD Sbjct: 249 GFCGG-PQDLIKAM-SNVNTQNSGGVTTLTQAAAVAVLNGPQDLLKERAE--IYRQRRDY 304 Query: 237 SIQRY 241 ++R Sbjct: 305 VLERL 309 >gi|209548488|ref|YP_002280405.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534244|gb|ACI54179.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 307 Score = 36.4 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 13/148 (8%) Query: 45 GQLFFLLLFYGTSALA-YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIR 103 G + F+++F +A A +Y G +PI + Q ++ G + Sbjct: 52 GTITFVVIFSFVAANALWYQPGLHP---HPIFRTRDPQSSNV---LGARRPAEEQQGDVT 105 Query: 104 GFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGM 163 F + + + + P+P + V DI++ ++ G+ + I Sbjct: 106 TFRIE-RPEDGATTTNATPAPAAPGQQPSQLVMDIQQQLVRRGL-YNGI---PDGVIGPR 160 Query: 164 DVDTIRLSYFASKPSAGKCGFWPEDMLG 191 I L + + A PE + Sbjct: 161 TSAAI-LFFEETVGMAQTGDPTPEVLAA 187 >gi|227502928|ref|ZP_03932977.1| siderophore-interacting protein [Corynebacterium accolens ATCC 49725] gi|227076350|gb|EEI14313.1| siderophore-interacting protein [Corynebacterium accolens ATCC 49725] Length = 622 Score = 36.1 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%) Query: 82 IVDIPLLAGRGEIKYPI--------HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRR 133 +V++P A ++ P D F+EK + +P + + Sbjct: 185 VVEVPTSADIQDLDIPDSVQIHWAVRDQGEDFVEKSRALFEGTSQSALPGGEAYAWAAGE 244 Query: 134 AVKD--IRKIIISSGIPVSSISERIY 157 A + +R++ +SGI Y Sbjct: 245 ASRLKPLRRLFKASGISPEHREITGY 270 >gi|187251342|ref|YP_001875824.1| outer membrane protein [Elusimicrobium minutum Pei191] gi|186971502|gb|ACC98487.1| Outer membrane protein [Elusimicrobium minutum Pei191] Length = 217 Score = 36.1 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL-----IPSPTVSSASIRRAVKDI 138 DI G E+ + I + +K +++ + S + + + + Sbjct: 101 DILFATGSAELSSQAINDIAAMSKVFKKYPYNIIVVEGHTDSTGSASFNQTLSENRARAV 160 Query: 139 RKIIISSGIPVSSISERIYDADYGMDV 165 +I++ + SI R Y A + Sbjct: 161 YNQLIANNVKTYSIGYRGYGASNPIAS 187 >gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2] Length = 219 Score = 36.1 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 12/80 (15%) Query: 165 VDTIRLSYFASKPSAGKCGFWPED------MLGNAKGNRNWTNYGCAYQNNLAAQVVNPL 218 TI Y A + G +WP D + N NW N A NL A Sbjct: 4 AATITGMYHAMLATLGPSRWWPGDTPFEIAVGAILTQNTNWRNVEKAI-ANLKA-----R 57 Query: 219 DLFSPRMVTPPDAEQRDKSI 238 DL S R + D + + I Sbjct: 58 DLLSARAMHALDTGELAELI 77 >gi|153003035|ref|YP_001377360.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter sp. Fw109-5] gi|152026608|gb|ABS24376.1| phosphoenolpyruvate-protein phosphotransferase [Anaeromyxobacter sp. Fw109-5] Length = 599 Score = 36.1 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 99 HDTIRGFLEKYKNDSASVLFLLIP--SPTVSSASIRRAVKDIRKIIISSGIPVSS 151 +R L + L ++ P S + +R + ++R+ + G PV Sbjct: 382 RAQLRALL---RASVHGNLRIMFPMISGVSELRAAKRLLAEVREELRREGAPVRE 433 >gi|260429940|ref|ZP_05783915.1| FAD dependent oxidoreductase [Citreicella sp. SE45] gi|260418863|gb|EEX12118.1| FAD dependent oxidoreductase [Citreicella sp. SE45] Length = 409 Score = 36.1 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 6/102 (5%) Query: 70 DRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDS---ASVLFLLIPSPTV 126 R P++ E+ + + + I + RGF + L P Sbjct: 260 ARLPLV---AERGYHVVFGESDVRLNHKIMNGTRGFGATGMEMGLQVTGTVELDSPGTAP 316 Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTI 168 + + R++ + S + I Sbjct: 317 NWRRAEALARGARQMFREGALGPVSSRWMGNRPSLPDSLPVI 358 >gi|108763538|ref|YP_629555.1| putative lipoprotein [Myxococcus xanthus DK 1622] gi|108467418|gb|ABF92603.1| putative lipoprotein [Myxococcus xanthus DK 1622] Length = 160 Score = 36.1 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDAD 160 + GF ++ D VL L + + AS + + + G V+ ++++ Sbjct: 37 RVVGFQVDFRQDGTGVLDLDL--AVTNPASDAATLAAVDFTLRVDGRRVAVGTQQVAAPL 94 Query: 161 YGMDVDTIRLSYFASKPSAG 180 +R+ + + A Sbjct: 95 AADGSAPLRVLFPLASARAT 114 >gi|288924078|ref|ZP_06418134.1| Beta-ketoacyl synthase [Frankia sp. EUN1f] gi|288344574|gb|EFC79047.1| Beta-ketoacyl synthase [Frankia sp. EUN1f] Length = 390 Score = 36.1 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%) Query: 124 PTVSSASIRRAVKD---IRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180 + + V +R ++ +G+ + D I L A G Sbjct: 304 GGSNGLTAPSGVAQERVLRAALVDAGVSADGVDVVEGHGTGTRLGDPIELG--ALLGFMG 361 Query: 181 KCGFWPEDMLGNAKGN 196 GFW + G+ K N Sbjct: 362 GAGFWSVFVGGSVKSN 377 >gi|313837570|gb|EFS75284.1| conserved domain protein [Propionibacterium acnes HL037PA2] gi|314927551|gb|EFS91382.1| conserved domain protein [Propionibacterium acnes HL044PA1] gi|314972509|gb|EFT16606.1| conserved domain protein [Propionibacterium acnes HL037PA3] Length = 320 Score = 36.1 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 7/91 (7%) Query: 81 QIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK 140 Q++++ G+ + + F+E + + ++ P TV + +++ + Sbjct: 2 QVLNLATGVGKTYL-------MAAFIEYLRRQGVGNVVIVTPGKTVQAKTVQNFALGEPR 54 Query: 141 IIISSGIPVSSISERIYDADYGMDVDTIRLS 171 I S +P ++ + Y A LS Sbjct: 55 YIAGSSVPPEVVTPQDYSAWIARQNGAEILS 85 >gi|254465230|ref|ZP_05078641.1| phospholipid/glycerol acyltransferase [Rhodobacterales bacterium Y4I] gi|206686138|gb|EDZ46620.1| phospholipid/glycerol acyltransferase [Rhodobacterales bacterium Y4I] Length = 276 Score = 36.1 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 26/152 (17%) Query: 58 ALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGF-LEKYKNDSASV 116 + Y GS R R P ++ +DI L R I + + G+ + + Sbjct: 76 GIRYTTRGSLMRQRGP-VVANHSSWLDIFALNARKRIYFVSKAEVAGWPGIGWLARATGT 134 Query: 117 LFLLIPSPTVSSASIRRAVKDIRKIIISS--------GIPVSSISERIY----------- 157 +F+ + R + + + G + + Sbjct: 135 VFIE-----RNPKKAREQADLFEQRLRAGHKLLFFPEGTSTDGLRVLSFKTTLFAAFFND 189 Query: 158 DADYGMDVDTIRLSYFASKPSAGKCGFWPEDM 189 G+ V + + Y A K + + W DM Sbjct: 190 HLRNGLHVQPVSVVYHAPKGAPARFYGWWGDM 221 >gi|333024772|ref|ZP_08452836.1| putative 5-methylcytosine methyltransferase [Streptomyces sp. Tu6071] gi|332744624|gb|EGJ75065.1| putative 5-methylcytosine methyltransferase [Streptomyces sp. Tu6071] Length = 324 Score = 36.1 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142 D+P G + P ++GF ++ S T +++RK + Sbjct: 264 DLPDKDGLVSLTVPQVALLQGFTADWRIAGRKTSTYRQISQTTPPPVAAAVGREVRKAL 322 >gi|318057150|ref|ZP_07975873.1| putative 5-methylcytosine methyltransferase [Streptomyces sp. SA3_actG] gi|318076182|ref|ZP_07983514.1| putative 5-methylcytosine methyltransferase [Streptomyces sp. SA3_actF] Length = 324 Score = 36.1 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 20/59 (33%) Query: 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142 D+P G + P ++GF ++ S T +++RK + Sbjct: 264 DLPDKDGLVSLTVPQVALLQGFTADWRIAGRKTSTYRQISQTTPPPVAAAVGREVRKAL 322 >gi|289706664|ref|ZP_06503012.1| oxidoreductase, short chain dehydrogenase/reductase family protein [Micrococcus luteus SK58] gi|289556584|gb|EFD49927.1| oxidoreductase, short chain dehydrogenase/reductase family protein [Micrococcus luteus SK58] Length = 311 Score = 36.1 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 24/121 (19%) Query: 67 DYRDRYP---ILMRKVEQ-IVDI---PLL-------AGRGEIKYP-------IHDTIRGF 105 D R R+P + ++ + +D+ P+ G G + Sbjct: 23 DPRTRHPKLRVAKQRQPEPGLDVKTDPVPDIGLDSYRGTGRLTGRKALVTGGDSGIGAAV 82 Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165 Y + A V +P + + A++ + ++ + + Y A + Sbjct: 83 AIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTAVAL---PGDLMDADYRAALVDEA 139 Query: 166 D 166 Sbjct: 140 A 140 >gi|33864192|ref|NP_895752.1| glycosyl transferase, group 1 [Prochlorococcus marinus str. MIT 9313] gi|33635776|emb|CAE22101.1| Glycosyl transferase, group 1 [Prochlorococcus marinus str. MIT 9313] Length = 373 Score = 36.1 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 11/117 (9%), Positives = 30/117 (25%), Gaps = 19/117 (16%) Query: 72 YPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI 131 + + + + VD+P + + + +Y+ + I S + Sbjct: 98 HAVRVMQAAARVDVPFVVHFRGSDLSANRRLGVLRSRYRR------LVSIASG------V 145 Query: 132 RRAVKDIRKIIISSGIPVSSISERI-------YDADYGMDVDTIRLSYFASKPSAGK 181 + + + G S+I + + L+ G Sbjct: 146 VCKSRPMATTLEQLGASPSTILISPSGANPALFSVGDPALAAPVFLAVGRFVAKKGP 202 >gi|239917194|ref|YP_002956752.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus NCTC 2665] gi|281414335|ref|ZP_06246077.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus NCTC 2665] gi|239838401|gb|ACS30198.1| short-chain alcohol dehydrogenase like protein [Micrococcus luteus NCTC 2665] Length = 309 Score = 35.7 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 24/121 (19%) Query: 67 DYRDRYP---ILMRKVEQ-IVDI---PLL-------AGRGEIKYP-------IHDTIRGF 105 D R R+P + ++ + +D+ P+ G G + Sbjct: 21 DPRTRHPKLRVAKQRQPEPGLDVKTDPVPDIGLDSYRGAGRLTGRKALITGGDSGIGAAV 80 Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV 165 Y + A V +P + + A++ + ++ + + Y A + Sbjct: 81 AIAYAREGADVAIAYLPQEQPDADRVLAAIEAAGRTAVAL---PGDLMDADYRAALVDEA 137 Query: 166 D 166 Sbjct: 138 A 138 >gi|152985568|ref|YP_001347077.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960726|gb|ABR82751.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7] Length = 300 Score = 35.7 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP-ILM---RKVEQIVDIPLLAGRGEI 94 L L G+L L G AL + ++YR RYP I + + ++ +LAG E+ Sbjct: 85 LSQLNRGELRLGLPLLGADAL-FAQRFAEYRRRYPNIAVHLVEGGSKTMEQAVLAGELEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 + GF Y+ L +L+P+ +++ A+ ++ Sbjct: 144 AGSLTPADDGF--DYQPFCNEPLDVLLPAGHPKASAASVALGELA 186 >gi|264676674|ref|YP_003276580.1| lipoprotein A [Comamonas testosteroni CNB-2] gi|262207186|gb|ACY31284.1| rare lipoprotein A [Comamonas testosteroni CNB-2] Length = 247 Score = 35.7 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%) Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 Y D+G + P ++ D+P + + E+ P G Y Sbjct: 67 YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 122 Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 ++ + + + ++ + S + S+ R + R+ Sbjct: 123 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 170 >gi|114319729|ref|YP_741412.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226123|gb|ABI55922.1| carbohydrate kinase, YjeF related protein [Alkalilimnicola ehrlichii MLHE-1] Length = 492 Score = 35.7 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 55 GTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSA 114 T A + +EG P + + +VD L G + P+ R L+ K Sbjct: 97 ATVARRFQEEGGQIESWDPTGLADEDVVVDALLGTG---LDRPVEGRYREALQALKAAGV 153 Query: 115 SVLFLLIPSP-TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL--- 170 VL + +PS + ++ + + G+ ++ + D + + Sbjct: 154 PVLAIDVPSGLNAGTGAVMGEAVEAHCTVTFIGLKPGLLTGAGPQCAGTLYFDDLGVPPE 213 Query: 171 SYFASKPSAGKC 182 Y P AG C Sbjct: 214 IYQDMAPVAGLC 225 >gi|310821456|ref|YP_003953814.1| beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1] gi|309394528|gb|ADO71987.1| Beta-ketoacyl synthase [Stigmatella aurantiaca DW4/3-1] Length = 1526 Score = 35.7 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 97 PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156 D+I + ++ + +P+ + + I + + +G+P SI Sbjct: 263 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 317 Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGN 196 + D + +S + A G CG LG+ K N Sbjct: 318 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSN 356 >gi|307194726|gb|EFN76964.1| hypothetical protein EAI_10347 [Harpegnathos saltator] Length = 167 Score = 35.7 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 18/82 (21%) Query: 110 KNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169 + + L + +P AS R ++RK+ G + + V +R Sbjct: 2 RRALSGALLIEVP-GLSVGASADRLADELRKLAAEMG--------PGFRVQRPVKVAPLR 52 Query: 170 LSYFASK---------PSAGKC 182 L+ A+ AG C Sbjct: 53 LAGLATTRAEEVTAAIARAGGC 74 >gi|320006706|gb|ADW01556.1| amino acid adenylation domain protein [Streptomyces flavogriseus ATCC 33331] Length = 2405 Score = 35.7 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 30/178 (16%) Query: 69 RDRYPILMRKVEQIVDIPLLAGRG-----EIKYPIHD-TIRGFLEKYKN---DSASVLF- 118 R RYP++ Q++D P + + + + + Sbjct: 95 RTRYPVVGGDPVQVIDAPAPVDLAEEDLTGLDPQDRAGRLAALGTSGRQPVDLADGPVVR 154 Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPS 178 ++ ++ V I S + V ++ER+ L Y Sbjct: 155 AVLARCAAEEHTLFVTVHHIAADGWSEDLLVRELTERLRQPAGPEPSAPA-LQYADFA-- 211 Query: 179 AGKCGFWPEDMLGNAK--GNRNWTNYGCAYQNNLA--AQVVNPLDLFSPRMVTPPDAE 232 W LG + + + LA A + P D PR D Sbjct: 212 -----VWQRARLGEDRLEDGLGYW------RRRLAGVAPLELPTD--RPRPAVRDDTG 256 >gi|115379305|ref|ZP_01466416.1| oxidoreductase, short chain dehydrogenase/reductase family [Stigmatella aurantiaca DW4/3-1] gi|115363687|gb|EAU62811.1| oxidoreductase, short chain dehydrogenase/reductase family [Stigmatella aurantiaca DW4/3-1] Length = 1519 Score = 35.7 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 97 PIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERI 156 D+I + ++ + +P+ + + I + + +G+P SI Sbjct: 256 ASRDSIHAVILGTAINNDGSTKVGYTAPSPEGQA-----EVIARALAVAGVPARSIGYVE 310 Query: 157 YDADYGMDVDTIRLS-----YFASKPSAGKCGFWPEDMLGNAKGN 196 + D + +S + A G CG LG+ K N Sbjct: 311 AHGTGTLLGDPVEVSALTRVFRAETADTGFCG------LGSVKSN 349 >gi|307719095|ref|YP_003874627.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM 6192] gi|306532820|gb|ADN02354.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM 6192] Length = 676 Score = 35.7 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 13/92 (14%) Query: 69 RDRYP----ILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLE---KYKNDSASVLFLLI 121 R R+P IL + +P+ G I I E +++ + S L + + Sbjct: 457 RWRHPREGLILPSEF-----VPIAEDTGLILPLGRWVISRAAEAWGRWRREGLSSLTISV 511 Query: 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSIS 153 + + R+ V +R+ + GIP ++ Sbjct: 512 -NLSPQQIRDRQLVDHLRETLSQHGIPPGYLT 542 >gi|220917838|ref|YP_002493142.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955692|gb|ACL66076.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans 2CP-1] Length = 761 Score = 35.7 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147 AGR ++ + G + A L + ++A R + + G+ Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209 Query: 148 PVSSISERIYDADYGMDVDTIRLS 171 PVS+++ D+ R++ Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230 >gi|86157647|ref|YP_464432.1| hypothetical protein Adeh_1221 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774158|gb|ABC80995.1| protein of unknown function DUF1355 [Anaeromyxobacter dehalogenans 2CP-C] Length = 761 Score = 35.7 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147 AGR ++ + G + A L + ++A R + + G+ Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209 Query: 148 PVSSISERIYDADYGMDVDTIRLS 171 PVS+++ D+ R++ Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230 >gi|197123048|ref|YP_002134999.1| hypothetical protein AnaeK_2645 [Anaeromyxobacter sp. K] gi|196172897|gb|ACG73870.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. K] Length = 761 Score = 35.7 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147 AGR ++ + G + A L + ++A R + + G+ Sbjct: 153 AAGRTDLLGALEAVTSGAGASSRRL-AGALVVS--DGADNAALADGLSGATRARLRALGV 209 Query: 148 PVSSISERIYDADYGMDVDTIRLS 171 PVS+++ D+ R++ Sbjct: 210 PVSAVAVGR---SAPRDLAVERVA 230 >gi|15595838|ref|NP_249332.1| bacteriophage protein [Pseudomonas aeruginosa PAO1] gi|9946517|gb|AAG04030.1|AE004499_9 probable bacteriophage protein [Pseudomonas aeruginosa PAO1] Length = 1204 Score = 35.7 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPTSGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823 >gi|258542353|ref|YP_003187786.1| hypothetical protein APA01_12600 [Acetobacter pasteurianus IFO 3283-01] gi|256633431|dbj|BAH99406.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636490|dbj|BAI02459.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639543|dbj|BAI05505.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642599|dbj|BAI08554.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645654|dbj|BAI11602.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648707|dbj|BAI14648.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651760|dbj|BAI17694.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654751|dbj|BAI20678.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 125 Score = 35.7 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 5/90 (5%) Query: 79 VEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-----TVSSASIRR 133 + + AG E+ + + EK K + ++ + + + + + Sbjct: 20 APRKYVVFFSAGSTELDDNARNVLLQVAEKSKRHPSRIVKVEGYAHAGQDLSADALLAIQ 79 Query: 134 AVKDIRKIIISSGIPVSSISERIYDADYGM 163 K + + + G+ I + Sbjct: 80 RAKAVAQQLSEDGVAGDHIVQTPRAPSSSE 109 >gi|299134224|ref|ZP_07027417.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2] gi|298590971|gb|EFI51173.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2] Length = 598 Score = 35.7 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 23/159 (14%) Query: 40 RTLMLGQLFFL-------LLFYGTSALAYYDEGSDY--RDRYPIL---MRKVEQIVDIPL 87 R LGQ F+ L G AY +DY RDR+PI+ + Q VD + Sbjct: 246 RANALGQYLFVNGRPVRDKLILGAVRAAY----ADYLPRDRHPIVALFVTLDPQEVDANV 301 Query: 88 LAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGI 147 + E+++ +R + + L ++ R+ + SG Sbjct: 302 HPAKTEVRFRNAGLVRALIVHALKEG---LAREGRRTAANTNGAAITTAFHREDLPRSGY 358 Query: 148 PVSSISERIYDADYGMDV---DTIRLSYFASKPSAGKCG 183 S + + ++ A PSA G Sbjct: 359 DWRSSPAAPFAPRASAMAFAEAP-QAAFDAYTPSADARG 396 >gi|328907820|gb|EGG27583.1| putative type III restriction enzyme [Propionibacterium sp. P08] Length = 318 Score = 35.7 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 103 RGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYG 162 F+E + + ++ P TV + +++ + I S +P ++ + Y A Sbjct: 15 AAFIEYLRRQGVGNVVIVTPGKTVQAKTVQNFALGEPRYIAGSSVPPEVVTPQDYSAWIA 74 Query: 163 MDVDTIRLS 171 LS Sbjct: 75 RQNGAEILS 83 >gi|116054370|ref|YP_788815.1| putative phage-related protein, tail component [Pseudomonas aeruginosa UCBPP-PA14] gi|115589591|gb|ABJ15606.1| putative phage-related protein, tail component [Pseudomonas aeruginosa UCBPP-PA14] Length = 1219 Score = 35.7 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823 >gi|295677420|ref|YP_003605944.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1002] gi|295437263|gb|ADG16433.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1002] Length = 345 Score = 35.7 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 10/108 (9%) Query: 93 EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI--IISSGIPVS 150 + P + ++L L + +++ + R +V I ++ +SG+ Sbjct: 77 HLAPPQKSGDDD------RRTRALLATLGAAGRMNACAARSSVAPIARLRRARASGLGAE 130 Query: 151 SISERIYDADYGMDV-DTIRLSYFASKPSAGKC-GFWPEDMLGNAKGN 196 + + +R+ Y ++ G C G W ++ N Sbjct: 131 TPAIVPDGVRRTGASRAPVRIVYASTTGVYGDCRGAWIDETRATQPAN 178 >gi|170747493|ref|YP_001753753.1| acyl-CoA dehydrogenase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170654015|gb|ACB23070.1| acyl-CoA dehydrogenase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 35.3 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 17/120 (14%) Query: 87 LLAGRGEIK-----YPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASI-----RRAVK 136 L+AG + + + + S ++ + V Sbjct: 115 LVAGDLRLTLAHTERQSRYDLADVATAARRSGDGFVLSGAKSVVPNADAAGLMVVSARVS 174 Query: 137 DIRKIIISSG---IP--VSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLG 191 R+ G +P + ++ Y G + S+ + A PED L Sbjct: 175 GERRDPRGLGLFLVPTDAAGVAVEAYPTQDGGRAAEV--SFSEVQIPADAALGDPEDGLP 232 >gi|153005408|ref|YP_001379733.1| hypothetical protein Anae109_2548 [Anaeromyxobacter sp. Fw109-5] gi|152028981|gb|ABS26749.1| protein of unknown function DUF1355 [Anaeromyxobacter sp. Fw109-5] Length = 759 Score = 35.3 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 11/113 (9%) Query: 59 LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLF 118 L +Y G D P+ + + +P AGR ++ + G + A L Sbjct: 128 LEWYTFGGDVA---PLDPAEAARG--VPGRAGRTDVLGALEAVASGAGGSTRRL-AGALV 181 Query: 119 LLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLS 171 + ++A + R + G+PV++++ D+ R++ Sbjct: 182 VS--DGADNAALAEGLGPEARAKARALGVPVNAVAVGR---SAPRDLAVERVA 229 >gi|227820509|ref|YP_002824480.1| hypothetical protein NGR_b22820 [Sinorhizobium fredii NGR234] gi|227339508|gb|ACP23727.1| hypothetical protein possibly linked to type III secretion [Sinorhizobium fredii NGR234] Length = 143 Score = 35.3 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 20/113 (17%) Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDV---DT------IRLSYFASKPS 178 S I ++I +G S + Y +Y +R Y ++ Sbjct: 7 SGGAMARATLIAALLIPAGCSGSH--PQPYSPNYSYLSMHGAPPAKGGLVRKGYDTTETQ 64 Query: 179 A---GKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTP 228 C + + + GCA NL + L R + P Sbjct: 65 TLVPDAC------ITPDTADQPLYLPSGCANNLNLQLMAADQRHLLKGREMGP 111 >gi|326776423|ref|ZP_08235688.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf. griseus XylebKG-1] gi|326656756|gb|EGE41602.1| NADP-dependent oxidoreductase domain protein [Streptomyces cf. griseus XylebKG-1] Length = 318 Score = 35.3 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%) Query: 64 EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123 E D R R+P +V + P++AG + T+ + + +P Sbjct: 224 EPEDLRARHPRFTAEVMAA-NQPVVAGLRRVAERRGATVAQVALAWVLR-QGPHVVPVPG 281 Query: 124 PTV------SSASIRRAVKDIRKIIISSGIPVSS 151 ++ + R + D R + G+P + Sbjct: 282 AKRERWAVENAGAARVVLDD-RDLAEIDGLPAAR 314 >gi|320334356|ref|YP_004171067.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Deinococcus maricopensis DSM 21211] gi|319755645|gb|ADV67402.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Deinococcus maricopensis DSM 21211] Length = 409 Score = 35.3 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 60/188 (31%) Query: 65 GSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP 124 GSD +PI+++ + E + + ++ + Sbjct: 18 GSD----HPIVVQSMTNT-----DTANAEATAIQVAQLA-------RAGSEIVRV----- 56 Query: 125 TVSSASIRRAVKDIRKIIISSGIPVSSISERIYD--------ADYGMDVDTIRLSYFASK 176 TV++ + A+ + + + GI V + + Y+ + + R++ Sbjct: 57 TVNNKAAAAAIPQVVQRLADVGIQVPIVGDFHYNGHILLREFPETARLLAKYRIN----- 111 Query: 177 PSAGKCGFWPEDMLGNAKGNRNWT-----------------NYGCAYQNNLAAQVVNPLD 219 P ++ + ++N+ N+G Q LA + Sbjct: 112 ---------PGNVGAGGQHDKNFATMIEVAREFDKPVRIGVNWGSLDQQVLARMMDENAR 162 Query: 220 LFSPRMVT 227 +PR T Sbjct: 163 AAAPRGGT 170 >gi|311260757|ref|XP_003128533.1| PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4 [Sus scrofa] Length = 2311 Score = 35.3 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 8/88 (9%) Query: 87 LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG 146 + R + + F ++ D L + P + + + + + G Sbjct: 2084 VRVPRARTEPRGGQLVEQFTQQDLEDGRLGLEVGRPEGSPPGPAGDSLTLE----LWARG 2139 Query: 147 IPVS----SISERIYDADYGMDVDTIRL 170 +P + + Y+A V + L Sbjct: 2140 VPPAVASLDFATEPYNAARPYSVALLSL 2167 >gi|194039704|ref|XP_001927173.1| PREDICTED: chondroitin sulfate proteoglycan 4 [Sus scrofa] Length = 2290 Score = 35.3 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 8/88 (9%) Query: 87 LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSG 146 + R + + F ++ D L + P + + + + + G Sbjct: 2063 VRVPRARTEPRGGQLVEQFTQQDLEDGRLGLEVGRPEGSPPGPAGDSLTLE----LWARG 2118 Query: 147 IPVS----SISERIYDADYGMDVDTIRL 170 +P + + Y+A V + L Sbjct: 2119 VPPAVASLDFATEPYNAARPYSVALLSL 2146 >gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein [Streptosporangium roseum DSM 43021] Length = 1051 Score = 35.3 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%) Query: 99 HDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 D + F Y D+ L L +P T + RA D+++ + G +S + Sbjct: 192 RDDVP-FALVYLLDADGDLRLAVPHGTAPAR--IRAGGDLQRSMTGGGSAP-ELSGEPFG 247 Query: 159 ADYGMDV 165 A Sbjct: 248 ASGPAVA 254 >gi|310791207|gb|EFQ26736.1| hypothetical protein GLRG_02556 [Glomerella graminicola M1.001] Length = 443 Score = 35.3 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 12/128 (9%) Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 Y GS Y + P+ + Q G + P + + F Y + Sbjct: 147 YAPRGSTYEQQSPMSYSRTSQS----PATGGEGLPAPPYGQHQSFQSGYSAGGTGSTPVS 202 Query: 121 IPSPTVSSASIRRAVKDIR---KIIISSGIPVSSISERIYDADY-----GMDVDTIRLSY 172 +PS + + G+P + + + Sbjct: 203 LPSQGPPTPQAGILGSQASVSTQPSTPGGVPSHVDTYTQSRPPATPGYYSTSSAPQQSPF 262 Query: 173 FASKPSAG 180 + + ++ Sbjct: 263 PSFQHTSP 270 >gi|111219887|ref|YP_710681.1| ABC transporter ATP-binding protein [Frankia alni ACN14a] gi|111147419|emb|CAJ59069.1| Putative ABC transporter ATP-binding protein (partial) [Frankia alni ACN14a] Length = 600 Score = 35.3 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 2/68 (2%) Query: 80 EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIR 139 D PL + + D + VL L P+ + + ++ +R Sbjct: 489 PDGYDTPLGQSGRRLSGGQRRRVT-LARGLLRD-SPVLVLDEPTAGLDDTAAEPLLRTLR 546 Query: 140 KIIISSGI 147 ++ + Sbjct: 547 RLAADRTV 554 >gi|221069204|ref|ZP_03545309.1| rare lipoprotein A [Comamonas testosteroni KF-1] gi|220714227|gb|EED69595.1| rare lipoprotein A [Comamonas testosteroni KF-1] Length = 247 Score = 35.3 bits (80), Expect = 7.7, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%) Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 Y D+G + P ++ D+P + + E+ P G Y Sbjct: 67 YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 122 Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 ++ + + + ++ + S + S+ R + R+ Sbjct: 123 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 170 >gi|209547632|ref|YP_002279549.1| phospholipid/glycerol acyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533388|gb|ACI53323.1| phospholipid/glycerol acyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 265 Score = 35.3 bits (80), Expect = 7.7, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + ++ + I G + + +L P T S + VK + Sbjct: 112 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGTTSDGNRLLEVKSSLFGAAA 165 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189 +P S + V + ++Y A WP D+ Sbjct: 166 MAVPAS--------PTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 207 >gi|299529490|ref|ZP_07042927.1| rare lipoprotein A [Comamonas testosteroni S44] gi|298722353|gb|EFI63273.1| rare lipoprotein A [Comamonas testosteroni S44] Length = 225 Score = 35.3 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 8/111 (7%) Query: 61 YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120 Y D+G + P ++ D+P + + E+ P G Y Sbjct: 45 YRDKGLGVKANKP---ADADKA-DLPEDSNKYELSPPRESDQAGLASWYGEQFHGRKTAS 100 Query: 121 IPS-PTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 ++ + + + ++ + S + S+ R + R+ Sbjct: 101 GERFDSMDMTAAHKTLPFGTRVCVRSSVTGKSVVVR---INDRGPFAPGRV 148 >gi|317402532|gb|EFV83099.1| transcriptional regulatory protein [Achromobacter xylosoxidans C54] Length = 295 Score = 35.3 bits (80), Expect = 7.9, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 19/150 (12%) Query: 39 LRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRYP---ILMRK-VEQIVDIPLLAGRGEI 94 LR L G L L G+S L + + +R RYP I + + ++ ++AG E+ Sbjct: 85 LRGLKRGVLRLGLPPLGSSTL-FAPMFARFRSRYPHIEISLLEHGGHRLEEMVMAGGIEL 143 Query: 95 KYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRK---IIISSGIPVSS 151 + F ++ + L L+P+ + + + +R I+ +G ++ Sbjct: 144 AASLRPDSDNF--DWQPVAREPLVALLPADHPHARAATVGLDQLRDSPFILFETGFALNR 201 Query: 152 ISERIYDADYGMDVDTIRLSYFASKPSAGK 181 I + A A +G+ Sbjct: 202 IIQE---ACRRAGFAP------AIAARSGQ 222 >gi|328887005|emb|CCA60244.1| putative nucleoside-diphosphate-sugar epimerase [Streptomyces venezuelae ATCC 10712] Length = 549 Score = 35.3 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 12/108 (11%) Query: 73 PILMRKVEQIVDIP------LLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFL---LIPS 123 P + + VD+ L AGRG ++ + F + + + L P Sbjct: 67 PETLASAFRDVDVAYYLVHALGAGRG-FEHTDRTAAQNFAREARAAGVGRIVYLGGLTPR 125 Query: 124 PTVSSASIR--RAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIR 169 R+ ++ +I++ SG+P + + + + +R Sbjct: 126 GVPDRELSPHLRSRAEVGRILLESGVPTTVLRAAVIIGSGSASFEMLR 173 >gi|255726752|ref|XP_002548302.1| hypothetical protein CTRG_02599 [Candida tropicalis MYA-3404] gi|240134226|gb|EER33781.1| hypothetical protein CTRG_02599 [Candida tropicalis MYA-3404] Length = 468 Score = 35.3 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 63 DEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIK 95 DE DY +PI + + IVD+ + Sbjct: 338 DESLDYLQHHPIELDSQDPIVDVFTGIPDSTLT 370 >gi|9309365|dbj|BAB03218.1| tail formation protein [Pseudomonas aeruginosa] Length = 628 Score = 35.3 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 171 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 229 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 230 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 272 >gi|256372783|ref|YP_003110607.1| glucose inhibited division protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009367|gb|ACU54934.1| glucose inhibited division protein [Acidimicrobium ferrooxidans DSM 10331] Length = 218 Score = 35.3 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 18/143 (12%) Query: 67 DYRDRYPILMRKVEQIVD----IPLLAGRGE-IKYPIHDTIRGFLEKYKNDSASVLFLLI 121 D R R + + + ++ + + A RGE + R + A + I Sbjct: 70 DARQRRAAFLTEAVRALNWSARVRIAAERGEVLARSKEIRERADAVVARGFGAPPVTAEI 129 Query: 122 PSP-----------TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 S + RR + + G+ V+ + V + Sbjct: 130 GSGFVRVGGVIVVSDPPEGAGRRWSAS--EQLARLGLVVAEVVVGPPHFTVLRKVAPLAG 187 Query: 171 SYFASKPSAGKCGFWPEDMLGNA 193 Y + W E+ Sbjct: 188 QYPRRSGIPERRPLWSEERSSTT 210 >gi|254243718|ref|ZP_04937040.1| hypothetical protein PA2G_04544 [Pseudomonas aeruginosa 2192] gi|126197096|gb|EAZ61159.1| hypothetical protein PA2G_04544 [Pseudomonas aeruginosa 2192] Length = 1204 Score = 35.3 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823 >gi|313680394|ref|YP_004058133.1| carbohydrate kinase, yjef related protein [Oceanithermus profundus DSM 14977] gi|313153109|gb|ADR36960.1| carbohydrate kinase, YjeF related protein [Oceanithermus profundus DSM 14977] Length = 486 Score = 35.3 bits (80), Expect = 8.6, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 76 MRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAV 135 +R+ + +VD G + P+ E+ V+ + +PS + +R + Sbjct: 108 LREADVVVDALFGTG---LTRPLEGAWAELAERINAADRPVVAVDVPSGLPYAPHVRADL 164 Query: 136 KDIRKIIISSGIPVSSISERIYDADYGMDVDTIRL 170 + +G+ + A + + I L Sbjct: 165 -----TVALAGLKPDHVFYPGRSACGRIQLAPIGL 194 >gi|152985256|ref|YP_001346180.1| carbohydrate-binding family V/XII protein [Pseudomonas aeruginosa PA7] gi|150960414|gb|ABR82439.1| carbohydrate-binding family V/XII [Pseudomonas aeruginosa PA7] Length = 1221 Score = 35.3 bits (80), Expect = 8.6, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823 >gi|107099611|ref|ZP_01363529.1| hypothetical protein PaerPA_01000625 [Pseudomonas aeruginosa PACS2] Length = 1204 Score = 34.9 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP--VSSISERIYDADYGM 163 Y A + + +S + A +I++ G ++ Y Sbjct: 722 ALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAY-PGNTH 780 Query: 164 DVDTI----RLSYF-ASKPSAGKCGFWPEDMLGNAKGNRNWTN 201 V I RL++ +G G W + G + + + N Sbjct: 781 LVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYN 823 >gi|257069010|ref|YP_003155265.1| 3-isopropylmalate dehydratase, large subunit [Brachybacterium faecium DSM 4810] gi|256559828|gb|ACU85675.1| 3-isopropylmalate dehydratase, large subunit [Brachybacterium faecium DSM 4810] Length = 479 Score = 34.9 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 9/111 (8%), Positives = 34/111 (30%), Gaps = 17/111 (15%) Query: 69 RDRYPILMRKVEQIVDIPLLAGRGEIKYPIHD---TIRGFLEKYKNDSASVLFLLIP-SP 124 R ++P + +++ +P + R ++ F +++ S+ + P Sbjct: 366 RTKHPDV-----RVLVVP-GSARVRLQAEQEGLDEIFLAFGAEWRQAGCSMCLGMNPDQL 419 Query: 125 TVSSASIRRAVKDIRKIIISSG-------IPVSSISERIYDADYGMDVDTI 168 + + ++ G + ++ + R + + Sbjct: 420 APGERAASTSNRNFEGRQGKGGRTHLVSPVVAAATAVRGTLSSPSDLGAPV 470 >gi|325921222|ref|ZP_08183083.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865] gi|325548285|gb|EGD19278.1| hypothetical protein XGA_2074 [Xanthomonas gardneri ATCC 19865] Length = 433 Score = 34.9 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Query: 73 PILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT-----VS 127 P+L+ +Q DI + G + + I +R +++ + +L ++PS + Sbjct: 289 PVLVELGQQAPDIAVAVG---LTHDIRADVRTYVDSNLPSAGRILNCMLPSGAGPASVRN 345 Query: 128 SASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVD 166 A + + + + +P + + ++ A Sbjct: 346 RAHAALLAHQLAQAVSETRVPGVARTVHLFMAAPNGFFS 384 >gi|332820870|ref|XP_001175202.2| PREDICTED: sodium-dependent dopamine transporter [Pan troglodytes] Length = 641 Score = 34.9 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 47 LFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRG--EIKYPIHD--TI 102 LF +L+ A Y + G R+P L+R+ E++ P + + Sbjct: 485 LFGVLIEAIGVAWFYGESGGRQPSRHP-LLRRGERLGTGPFDGISEVLSLDGSQKTHTVV 543 Query: 103 RGFLEKYKNDSASVLFLLIP-SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADY 161 RG + + ++S+L +P SP++ + + ++ D ++ + G + Y A Sbjct: 544 RGVHSGWASSASSMLEAPVPSSPSLLTRAPEQSGPDDQRAALERGAAPGPFASSAYLASS 603 >gi|255065363|ref|ZP_05317218.1| putative SanA protein [Neisseria sicca ATCC 29256] gi|255050188|gb|EET45652.1| putative SanA protein [Neisseria sicca ATCC 29256] Length = 224 Score = 34.9 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 16 FKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALAYYDEGSDYRDRY--P 73 F L N R+L+ ++ ++ F +R +F L+LF+ + L + D++ Sbjct: 3 FVKLRNNRNLLIQPRSNYFHLFRIRMFKKALVFILVLFFTAALLPLWIMWRDFQVSRLDA 62 Query: 74 ILMRKVEQIVDIPLLAGRG-EIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIR 132 +R + V + + G + + + +E Y+ A + L+ S + S + Sbjct: 63 DTVRPADAAVVLSTRSYEGGRLNPCLVARVEAAVELYR---AGKVKKLVMSGGL-SRDFQ 118 Query: 133 RAVKDIRKIIISSGIPVSSIS 153 A +++ I G+ I Sbjct: 119 SASGNMQAIAEKMGVSKEDII 139 >gi|218458829|ref|ZP_03498920.1| phospholipid/glycerol acyltransferase [Rhizobium etli Kim 5] Length = 213 Score = 34.9 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + ++ + I G + + +L P T S + VK + Sbjct: 73 VFVVREERRKTGHQANEIAG------RMADGEIIVLFPEGTTSDGNRLLEVKSSLFGAAA 126 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189 +P S + V + ++Y A WP D+ Sbjct: 127 MAVPAS--------PTGTVVVQPVAVAYTRVHGIAMGRYHRPLAAWPGDI 168 >gi|86747626|ref|YP_484122.1| hypothetical protein RPB_0500 [Rhodopseudomonas palustris HaA2] gi|86570654|gb|ABD05211.1| hypothetical protein RPB_0500 [Rhodopseudomonas palustris HaA2] Length = 293 Score = 34.9 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%) Query: 68 YRDRYPI----LMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123 +R+ + I + D+P++ GE + + F + S+L + +P+ Sbjct: 71 WREGHAIEGCFVASGAPASDDVPVILCVGESRLSKEQLLAAFAQSAHESGMSLLGIDLPA 130 Query: 124 P------TVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKP 177 P + V I + +G+ I+ + M + L Sbjct: 131 PIRSLEAEPPATPETAIVAAIDYLHERAGVDAERIAVVADGSPSSMVARGVALD-GRVAA 189 Query: 178 SAGKCGFW 185 + G W Sbjct: 190 AVCDAGVW 197 >gi|86356034|ref|YP_467926.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein [Rhizobium etli CFN 42] gi|86280136|gb|ABC89199.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein [Rhizobium etli CFN 42] Length = 244 Score = 34.9 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 19/110 (17%) Query: 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIIS 144 + ++ + I G + + +L P T S + VK + Sbjct: 91 VFVVREERRKTGHQANEIAG------RMADGEIVVLFPEGTTSDGNRLLEVKSSLFGAAA 144 Query: 145 SGIPVSSISERIYDADYGMDVDTIRLSYFASKPSA-----GKCGFWPEDM 189 +P S + V + ++Y A WP D+ Sbjct: 145 MAVPAS--------PTGTVVVQPVAIAYTRVHGIAMGRYHRPLAAWPGDI 186 >gi|103486519|ref|YP_616080.1| peptidyl-arginine deiminase [Sphingopyxis alaskensis RB2256] gi|98976596|gb|ABF52747.1| Porphyromonas-type peptidyl-arginine deiminase [Sphingopyxis alaskensis RB2256] Length = 327 Score = 34.9 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 8/85 (9%), Positives = 22/85 (25%), Gaps = 3/85 (3%) Query: 75 LMRKVEQIVDIPLLAGRGEIKYPIHDTIRG--FLEKYKNDSASVLFLLIPS-PTVSSASI 131 + ++ P + G Y N +++P+ + + Sbjct: 231 VYADARARTVAFGGVEIVDLPSPGRIELNGEIAAASYMNFYIGNSTVVVPTYGVANDQAA 290 Query: 132 RRAVKDIRKIIISSGIPVSSISERI 156 + + + G+P I Sbjct: 291 VDTLAALFPDRRAVGVPARGIIVGG 315 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.148 0.472 Lambda K H 0.267 0.0454 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,730,075,644 Number of Sequences: 14124377 Number of extensions: 128534204 Number of successful extensions: 587114 Number of sequences better than 10.0: 420 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 270 Number of HSP's that attempted gapping in prelim test: 586714 Number of HSP's gapped (non-prelim): 492 length of query: 243 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 108 effective length of database: 2,936,002,735 effective search space: 317088295380 effective search space used: 317088295380 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 79 (34.9 bits)