RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)



>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
           adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 26.3 bits (57), Expect = 2.4
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 46  QLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGF 105
           ++  L    G   L  +   + ++         + QIV    L             I   
Sbjct: 146 KVKLLC---GADLLESFAVPNLWKSE------DITQIVANYGLICVTRAGNDAQKFIYES 196

Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI 141
              +K+ S   +     +  +SS  IRRA++  + I
Sbjct: 197 DVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSI 232


>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
           CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 133

 Score = 24.9 bits (54), Expect = 6.6
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 83  VDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142
           V++P+L     + +    + +   EK  N++      L+      +       K + +II
Sbjct: 14  VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA---LMYHTITLTREDLEKFKAL-RII 69

Query: 143 ISSGIPVSSI 152
           +  G    +I
Sbjct: 70  VRIGSGFDNI 79


>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 292

 Score = 24.8 bits (53), Expect = 7.7
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)

Query: 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSI---------SERIYDADYGMDVDTIRLSY 172
           P P        + + D++  I  SG+ VS +         + R  D   G +   + L  
Sbjct: 3   PLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMP 62


>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
           {Thermus thermophilus [TaxId: 274]}
          Length = 104

 Score = 24.7 bits (54), Expect = 8.2
 Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 10/52 (19%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS----------ASIRRAV 135
           +   +       +E+        + L I     +             +R+ +
Sbjct: 47  VDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTI 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,896
Number of extensions: 42829
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 6
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)