RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] (243 letters) >d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 271 Score = 26.3 bits (57), Expect = 2.4 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%) Query: 46 QLFFLLLFYGTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGF 105 ++ L G L + + ++ + QIV L I Sbjct: 146 KVKLLC---GADLLESFAVPNLWKSE------DITQIVANYGLICVTRAGNDAQKFIYES 196 Query: 106 LEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKI 141 +K+ S + + +SS IRRA++ + I Sbjct: 197 DVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSI 232 >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 Score = 24.9 bits (54), Expect = 6.6 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%) Query: 83 VDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKII 142 V++P+L + + + + EK N++ L+ + K + +II Sbjct: 14 VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA---LMYHTITLTREDLEKFKAL-RII 69 Query: 143 ISSGIPVSSI 152 + G +I Sbjct: 70 VRIGSGFDNI 79 >d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 292 Score = 24.8 bits (53), Expect = 7.7 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%) Query: 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSI---------SERIYDADYGMDVDTIRLSY 172 P P + + D++ I SG+ VS + + R D G + + L Sbjct: 3 PLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMP 62 >d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]} Length = 104 Score = 24.7 bits (54), Expect = 8.2 Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 10/52 (19%) Query: 94 IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSS----------ASIRRAV 135 + + +E+ + L I + +R+ + Sbjct: 47 VDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTI 98 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.141 0.426 Gapped Lambda K H 0.267 0.0685 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 928,896 Number of extensions: 42829 Number of successful extensions: 134 Number of sequences better than 10.0: 1 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 6 Length of query: 243 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,268,006 Effective search space: 202880960 Effective search space used: 202880960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (23.9 bits)