BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score =  502 bits (1292), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60
           MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA
Sbjct: 1   MMVEYMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLFFLLLFYGTSALA 60

Query: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120
           YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL
Sbjct: 61  YYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLL 120

Query: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180
           IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG
Sbjct: 121 IPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAG 180

Query: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240
           KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR
Sbjct: 181 KCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQR 240

Query: 241 YRQ 243
           YRQ
Sbjct: 241 YRQ 243


>gi|254780437|ref|YP_003064850.1| 30S ribosomal protein S21 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 95

 Score = 25.8 bits (55), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 126 VSSASIRRAVKDIRKIIISSGIPVSSISE 154
           + S +IRR+ K +RKI    G PVS + +
Sbjct: 65  LKSEAIRRSRKLMRKIAQREGAPVSRLRQ 93


>gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 344

 Score = 23.9 bits (50), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 27 SC-LKTIFWKNFFLRTLMLGQLFFLLL 52
          SC +K I W+ FF   ++  + FF +L
Sbjct: 26 SCDVKKITWRKFFWEKILSNKTFFKIL 52


>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 200

 Score = 23.5 bits (49), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 114 ASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYF 173
           +SVL L+    T++  SI  A+  + + I+ SG+       R Y A+  + V   R++ F
Sbjct: 86  SSVLLLMTADGTINRYSIWAAITILCREILVSGL-------REYLAELKVSVPVTRIARF 138

Query: 174 ASKPSAGKCGF 184
            +       GF
Sbjct: 139 KTGIQMISIGF 149


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,897
Number of Sequences: 1233
Number of extensions: 6353
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 328,796
effective HSP length: 72
effective length of query: 171
effective length of database: 240,020
effective search space: 41043420
effective search space used: 41043420
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)