HHsearch alignment for GI: 255764486 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.69 E-value=1.9e-14 Score=110.08 Aligned_cols=178 Identities=16% Similarity=0.338 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999999999986330557899999999987544899999999999999875322100132342103557530179999
Q gi|255764486|r 271 SVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGL 350 (493)
Q Consensus 271 a~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~s~l~a~l 350 (493)
T Consensus 1 Gv~lG~~~a~----~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~---~~----------------~~~~~~~~~i~ 57 (183)
T pfam00528 1 GIPLGIIAAL----RRGRRLDRLLRPLIDLLQALPSFVLAILLVVISI---LS----------------ILGHGILPAII 57 (183)
T ss_pred CHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----------------HHHHHHHHHHH
T ss_conf 9869999995----0785899999999999998349999999999984---23----------------66789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998877689999999862129999887660885689999999983033699999999999987599999994122257
Q gi|255764486|r 351 VMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARL 430 (493)
Q Consensus 351 ~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~RaiGETm~v~m~~G~~~~~ 430 (493)
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~-G- 135 (183)
T pfam00528 58 LALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP-G- 135 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-
T ss_conf 99999999999999999970689999999986998434129921898999999999999999999999999993689-6-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86704671127999999850223457545899999999999999999999999999975
Q gi|255764486|r 431 QFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489 (493)
Q Consensus 431 ~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~~r~r 489 (493)
T Consensus 136 ----------lG~~~~~a~-~~~-----d~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld 178 (183)
T pfam00528 136 ----------LGLLLIEAI-LGY-----DYPEIQGPVLAAALILLLLNLLVDILQRLLD 178 (183)
T ss_pred ----------HHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ----------759999999-977-----0999999999999999999999999998739