Query gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 493
No_of_seqs 249 out of 2375
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 14:45:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764486.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3d31_C Sulfate/molybdate ABC 99.9 2.9E-25 8.5E-30 178.9 22.5 215 250-490 77-291 (295)
2 >2r6g_G Maltose transport syst 99.9 1.7E-23 5.1E-28 167.5 15.3 169 248-431 4-172 (172)
3 >3dhw_A D-methionine transport 99.9 1.5E-21 4.4E-26 155.2 14.8 204 252-491 8-217 (217)
4 >2onk_C Molybdate/tungstate AB 99.9 9.8E-21 2.9E-25 149.9 15.3 166 252-428 1-166 (181)
5 >2r6g_F Maltose transport syst 99.8 3E-18 8.8E-23 134.0 14.3 145 251-428 7-151 (152)
6 >2r6g_F Maltose transport syst 92.3 0.26 7.8E-06 25.8 4.9 57 432-490 61-117 (117)
7 >3hb3_B Cytochrome C oxidase s 67.6 6.2 0.00018 17.0 5.2 19 197-219 109-127 (136)
8 >2e9x_C GINS complex subunit 3 38.2 19 0.00056 13.9 2.4 24 28-51 12-36 (126)
9 >1vf5_E Protein PET L; photosy 18.0 43 0.0013 11.6 1.9 21 260-280 6-26 (32)
10 >3d6j_A Putative haloacid deha 14.4 53 0.0016 11.0 0.9 13 481-493 49-61 (65)
No 1
>>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:)
Probab=99.95 E-value=2.9e-25 Score=178.86 Aligned_cols=215 Identities=17% Similarity=0.196 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67749999999999999999999999999999986330557899999999987544899999999999999875322100
Q gi|255764486|r 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMN 329 (493)
Q Consensus 250 ~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~ 329 (493)
+...++.+.+|+.++++++++++++|+..|++++++ +.|.|+..+....+...+|.++.++.......+..
T Consensus 77 ~~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 147 (295)
T 3d31_C 77 NRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRG-------- 147 (295)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTS--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf 989999999999999999999999999999999963-66479999999999999999999999999997266--------
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13234210355753017999999998877689999999862129999887660885689999999983033699999999
Q gi|255764486|r 330 GLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409 (493)
Q Consensus 330 ~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~ 409 (493)
..............+.....+++.++..|++....+++++++|++++|+|..+||++||+++||++|.++|+|+++.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~ 227 (295)
T 3d31_C 148 LIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMT 227 (295)
T ss_dssp TTTGGGTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32430332167123999999999999999999999999975050589999876998262127746996999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998759999999412225786704671127999999850223457545899999999999999999999999999975
Q gi|255764486|r 410 ASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489 (493)
Q Consensus 410 ~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~~r~r 489 (493)
+..+++|..++.+..|+.. +++..+.++. .+.+ +..+.|.++++++++++++.+..++.||++
T Consensus 228 ~~~~~~~~~~~~~l~~~~~-----------~~~~~i~~~~-~~~~-----~~~~~a~~~i~~~~~~~~~~~~~~~~~r~~ 290 (295)
T 3d31_C 228 WARAISEFGAVVILAYYPM-----------VGPTLIYDRF-ISYG-----LSASRPIAVLLILVTLSIFLVIRTLSAGWS 290 (295)
T ss_dssp HHHHHTCCHHHHHHHCTTC-----------CHHHHHHHHH-HHST-----TTTTHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHH-HHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999958973-----------1999999999-9448-----999999999999999999999999997603
Q ss_pred H
Q ss_conf 4
Q gi|255764486|r 490 R 490 (493)
Q Consensus 490 ~ 490 (493)
.
T Consensus 291 ~ 291 (295)
T 3d31_C 291 I 291 (295)
T ss_dssp -
T ss_pred H
T ss_conf 6
No 2
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244)
Probab=99.91 E-value=1.7e-23 Score=167.53 Aligned_cols=169 Identities=14% Similarity=0.056 Sum_probs=151.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56677499999999999999999999999999999863305578999999999875448999999999999998753221
Q gi|255764486|r 248 MGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIY 327 (493)
Q Consensus 248 ~~~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~ 327 (493)
.++++.++.+.+|+.+++++.++++++|+..|.+++++ +.|.|+.++....+...+|.++.++.-...+.+...
T Consensus 4 ~~~~~~~~~l~~Sl~~a~~~~~i~~~ig~~~a~~~~~~-~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~----- 77 (172)
T 2r6g_G 4 PPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM-RFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGE----- 77 (172)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCCHHHEEEHHEECCCCCC-----
T ss_conf 56527999986489999999999986310333333204-414788999876233213311201103100244565-----
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00132342103557530179999999988776899999998621299998876608856899999999830336999999
Q gi|255764486|r 328 MNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAIL 407 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~i 407 (493)
.......+.+.+.++..++.+|++....+++++++|++++|+|..+||++||+++||++|.++|+|.++.+
T Consensus 78 ---------~~~~~~~~~~~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~f~~V~lP~~~p~i~~~~~ 148 (172)
T 2r6g_G 78 ---------YIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFI 148 (172)
T ss_dssp ---------HSTTSSTTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCEEEEEECCCCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------12222467500000003551154211000364133056555677549407777888889876546777887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999875999999941222578
Q gi|255764486|r 408 MTASRTIGETMIVVLAAGVAARLQ 431 (493)
Q Consensus 408 L~~~RaiGETm~v~m~~G~~~~~~ 431 (493)
+.+.|++||++++.+..|+.+..+
T Consensus 149 l~f~~~~~~~~~~~~l~~~~~~~T 172 (172)
T 2r6g_G 149 LSFIAAITEVPVASLLLRDVNSYT 172 (172)
T ss_dssp HHHHHHHTCCHHHHHHCCSGGGCC
T ss_pred HHHHHHCCEEECCEECCCCCCCEE
T ss_conf 764432323003401148987166
No 3
>>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:)
Probab=99.88 E-value=1.5e-21 Score=155.15 Aligned_cols=204 Identities=18% Similarity=0.277 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 749999999999999999999999999999986330------55789999999998754489999999999999987532
Q gi|255764486|r 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAP------KKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDIS 325 (493)
Q Consensus 252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~------~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~ 325 (493)
-.+..+..|+.+++.++++++.+|+..|+.++.+.. +++........+.+.++|.+++..........
T Consensus 8 ~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 81 (217)
T 3dhw_A 8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRV------ 81 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 99999999999999999999999999999999987344320189999999999999999999999999986455------
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001323421035575301799999999887768999999986212999988766088568999999998303369999
Q gi|255764486|r 326 IYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGA 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~ 405 (493)
....+.+.....+++.+...|++....+++++++|++++|+|.++|+||||+++||++|.++|+++++
T Consensus 82 ------------~~~~~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v~lP~~~p~i~~~ 149 (217)
T 3dhw_A 82 ------------IVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNA 149 (217)
T ss_dssp ------------TTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHH
T ss_pred ------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------20453018899898899724689899998888615027788860698742142673099769999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875999999941222578670467112799999985022345754589999999999999999999999999
Q gi|255764486|r 406 ILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIM 485 (493)
Q Consensus 406 ~iL~~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~ 485 (493)
.++.+++++||+..+.++.++. ....+.... ... .++....+..++++++++++|.+..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~ig~~~-------------~~~~~~~~~--~~~---~~~~~~~~~~~~~~i~~~~~~~l~~~l~ 211 (217)
T 3dhw_A 150 ATITLITLVGYSAMGGAVGAGG-------------LGQIGYQYG--YIG---YNATVMNTVLVLLVILVYLIQFAGDRIV 211 (217)
T ss_dssp HHHHHHHHHHHHHHCCSTTCCH-------------HHHHHHHHH--HSS---CCTTHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH--HHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998759-------------999999999--975---0189999999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 997542
Q gi|255764486|r 486 KKYQRK 491 (493)
Q Consensus 486 ~r~r~~ 491 (493)
||.++|
T Consensus 212 ~~~~rR 217 (217)
T 3dhw_A 212 RAVTRK 217 (217)
T ss_dssp ------
T ss_pred HHHCCC
T ss_conf 985699
No 4
>>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249)
Probab=99.87 E-value=9.8e-21 Score=149.90 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL 331 (493)
Q Consensus 252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~ 331 (493)
|+++.+.+|+.+++++.++++++|+..|+.+++. ++|.|+..+........+|++++|+.-.....+..
T Consensus 1 ~~~~~l~~Tl~~a~~~~~i~~~ig~~~a~~~~~~-~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~---------- 69 (181)
T 2onk_C 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSG---------- 69 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC----------
T ss_conf 8999999999999999999999999999988641-56315899999987412101222333100235532----------
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23421035575301799999999887768999999986212999988766088568999999998303369999999999
Q gi|255764486|r 332 ITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS 411 (493)
Q Consensus 332 ~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~ 411 (493)
............+.....+.+.++.+|+.....+++++++|+++.|+|..+|+|+||+.+||++|.++|+|.++.++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~q~~~~I~lP~~~p~i~~~~~l~~~ 149 (181)
T 2onk_C 70 LIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWA 149 (181)
T ss_dssp TTTTTCSSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 22221234544433202210113333331222000022354245645432699843400634486627632675188887
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99875999999941222
Q gi|255764486|r 412 RTIGETMIVVLAAGVAA 428 (493)
Q Consensus 412 RaiGETm~v~m~~G~~~ 428 (493)
++++|..+..+..|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (181)
T 2onk_C 150 RGISEFGAVVVIAYYPM 166 (181)
T ss_dssp HHHHCCHHHHTTCCSSC
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 69999888874328985
No 5
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453)
Probab=99.79 E-value=3e-18 Score=134.04 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77499999999999999999999999999999863305578999999999875448999999999999998753221001
Q gi|255764486|r 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNG 330 (493)
Q Consensus 251 ~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~ 330 (493)
...+..+++|+.++..+.+++..+|+..|-.++.+ +-+-|++++.+..+.-.+|.++.|+.-
T Consensus 7 ~~~~~~~~~tl~~a~~~~~~~~~~g~~~a~l~~r~-~f~gr~~l~~~~~lp~~~p~~v~~~~~----------------- 68 (152)
T 2r6g_F 7 KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE-ALRGKAVYRVLLILPYAAWFSDPTTAR----------------- 68 (152)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SSTTHHHHHHHTTHHHHCTTTSHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCHHCCCHHHH-----------------
T ss_conf 89999999999999999999999999999998742-246211413532388880204821322-----------------
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32342103557530179999999988776899999998621299998876608856899999999830336999999999
Q gi|255764486|r 331 LITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTA 410 (493)
Q Consensus 331 ~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~ 410 (493)
....++..+..+|++....+++++++|++++|+|..+|+++||+++||++|.++|+++++.++.+
T Consensus 69 ---------------~~li~a~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~~~p~il~~~~l~f 133 (152)
T 2r6g_F 69 ---------------TMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASF 133 (152)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEEEHHHHHHHHHHHHHHH
T ss_conf ---------------22333455553224455444320244278999999749994011314631647899999999999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999875999999941222
Q gi|255764486|r 411 SRTIGETMIVVLAAGVAA 428 (493)
Q Consensus 411 ~RaiGETm~v~m~~G~~~ 428 (493)
.++++|..+..+..||.+
T Consensus 134 ~~~~~e~~~~~~l~gggp 151 (152)
T 2r6g_F 134 AFNFNNFVLIQLLTNGGP 151 (152)
T ss_dssp HHHHTCHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999998789999947998
No 6
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:64-99,F:249-268,F:454-514)
Probab=92.30 E-value=0.26 Score=25.78 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67046711279999998502234575458999999999999999999999999999754
Q gi|255764486|r 432 FNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQR 490 (493)
Q Consensus 432 ~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~~r~r~ 490 (493)
.+|-+..+++...++.+.... .++.++...-|.+++|+++++++..+-.+..||.+|
T Consensus 61 GGP~~aT~tl~~yiY~~aF~~--~~~~~~G~aSAiavILflIi~iv~~i~~r~~~k~eE 117 (117)
T 2r6g_F 61 TTPAGYTDLLVNYTYRIAFEG--GGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 117 (117)
T ss_dssp SSCCBSSCCHHHHHHHHHTSS--SSCCCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 666405879999999999851--444568999999999999999999999999832589
No 7
>>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:1-136)
Probab=67.57 E-value=6.2 Score=17.01 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589999999999996212245
Q gi|255764486|r 197 NSLLLSIVISFGIIISLFANTFK 219 (493)
Q Consensus 197 ~~s~iAIl~t~gIv~sl~~es~~ 219 (493)
.-.++.++ |+..+.++|++
T Consensus 109 iWTiiP~l----ILi~la~PSl~ 127 (136)
T 3hb3_B 109 IWTLVPVL----ILVAIGAFSLP 127 (136)
T ss_dssp HHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHH
T ss_conf 99999999----99999998876
No 8
>>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} (C:94-219)
Probab=38.17 E-value=19 Score=13.94 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHCCCCCCCCC-CCHHHHHHHHHHH
Q ss_conf 40588887558-4144899999999
Q gi|255764486|r 28 SKKNAIRLYSK-ESYYGVYVALYSI 51 (493)
Q Consensus 28 ~~~~~~kLhSL-P~YYG~y~aLw~~ 51 (493)
+......||++ |+||++=.-+.-+
T Consensus 12 ADp~~VdL~~~~p~fY~lG~~l~~l 36 (126)
T 2e9x_C 12 ADPNVVDLHKMGPHFYGFGSQLLHF 36 (126)
T ss_dssp HCGGGSCTTTSCSSHHHHHHHGGGG
T ss_pred CCCCEEEHHHCCHHHHHHHHHHHHH
T ss_conf 6976642231580799999999985
No 9
>>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (E:)
Probab=18.02 E-value=43 Score=11.62 Aligned_cols=21 Identities=48% Similarity=1.065 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|255764486|r 260 TFYIGFIAMLFSVPIGLLIAI 280 (493)
Q Consensus 260 Tl~i~~iA~lia~Pigl~~Ai 280 (493)
-+++.++|+.+++.+|+..||
T Consensus 6 vfyivfialffgiavgiifai 26 (32)
T 1vf5_E 6 VFYIVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred EHHHHHHHHHHHHHHHHEEEE
T ss_conf 079999999997886321457
No 10
>>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} (A:21-85)
Probab=14.36 E-value=53 Score=11.04 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999754229
Q gi|255764486|r 481 AMYIMKKYQRKYE 493 (493)
Q Consensus 481 a~~i~~r~r~~y~ 493 (493)
+...++.||++|+
T Consensus 49 ~~~~v~~Yr~~Y~ 61 (65)
T 3d6j_A 49 LESFRQEYSKEAD 61 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
Done!