RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane
spanning protein [Candidatus Liberibacter asiaticus str. psy62]
         (493 letters)



>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 310

 Score =  239 bits (612), Expect = 1e-63
 Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 16/322 (4%)

Query: 173 AILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIIS-ATDFFF 231
           A  +       R   EK    LL  + ++ ++    I++ L       F     +  F F
Sbjct: 3   APAKATQKIKKRKRKEKLFKALLFAAAVIVVLALLLILVFLLIEAIPAFQKFGLSLFFLF 62

Query: 232 GIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYA-PKKL 290
           G  W+P       +N   Q+G +P + GT     IA+L +VP+G+  AI+++EYA P++L
Sbjct: 63  GTEWNP-------TNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRL 115

Query: 291 RAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGL 350
           R V+KP  E+L GIP++VYGFF L ++ PFLRD+     G   G         S+LTAG+
Sbjct: 116 RRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVF----GPPLGFNLG-PFGISILTAGI 170

Query: 351 VMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTA 410
           V+ IM++P ++SLS D + ++PRSLR+ +  LGAT+ ET++ VI PAA  GI GA+++  
Sbjct: 171 VLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGL 230

Query: 411 SRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL 470
            R +GETM V +  G  AR+  + F   TT+T  I N+  G+       T   FALGL L
Sbjct: 231 GRALGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANE-FGEASG-GLHTSALFALGLVL 288

Query: 471 FCITFFLNIYAMYIMKKYQRKY 492
           F IT  LNI A YI+++ +RKY
Sbjct: 289 FVITLLLNILARYIVRRRRRKY 310


>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 292

 Score =  137 bits (347), Expect = 6e-33
 Identities = 77/319 (24%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 178 KPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDP 237
           +     R    K    L+  +  ++++    I+ ++                   +  + 
Sbjct: 6   RKLSMRRRIKNKLATGLVFLAAAVALLPLLWILWTILIRGIP------------ALSLNL 53

Query: 238 RFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPK-KLRAVIKP 296
            F     S      G+ P ++GT Y+  +A+L  VP+G+   IY+AEYA K +L  VI+ 
Sbjct: 54  EFFTGSPSPPGEGGGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRF 113

Query: 297 ITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML 356
             ++L  +P+IVYG F L      L                      S L   L + +++
Sbjct: 114 AIDILASVPSIVYGLFGLGFFVVTLG------------------FGFSALAGALALALLM 155

Query: 357 IPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416
           +P V   +E+ + ++P SLR+ +  LGAT+ +T+  V+ PAA PGI   +++  +R  GE
Sbjct: 156 LPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGE 215

Query: 417 TMIVVLAAGVAARLQFNP---FESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCI 473
           T  ++  AG++A     P      +  + V I    T     S     +A+   L L  I
Sbjct: 216 TAPLLFTAGMSANSPSWPTDLLTPVAALPVHIYMLATSGP--SPEAQELAWGAALVLLLI 273

Query: 474 TFFLNIYAMYIMKKYQRKY 492
              LN+ A  + +++++K 
Sbjct: 274 VLLLNLLARLLRRRFRKKL 292


>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system,
           permease component [General function prediction only].
          Length = 733

 Score =  122 bits (306), Expect = 3e-28
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV-YGFFALSLVGP--- 319
           G +A++  +P+ +L+  ++    PK     +      L+ IP ++  G  AL L      
Sbjct: 502 GVLALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELEN 561

Query: 320 --FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRD 377
             F  D+ +++            + ++ L  G  MG  +IP + S++ED I S+P+SL D
Sbjct: 562 ALFGGDLRVWL-----AQDGIGYDQRNALVVGFAMGFAVIPTIFSIAEDAIFSVPKSLSD 616

Query: 378 GSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFES 437
           GSL LGAT  +T+ YV+   A PGI  AI++   R +GETMIV++A G    L +N FE 
Sbjct: 617 GSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLLDWNIFEG 676

Query: 438 MTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE 493
           M T+   I  ++  + +  S    V F   L L   TF +N  A ++ ++ + KY 
Sbjct: 677 MRTLAANIAVEMP-ESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLREKYR 731



 Score = 66.2 bits (161), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309
           +F L+P+  GT      AMLF++P+ +  AIY A +    +R V+KP  E++  +PT++ 
Sbjct: 425 KFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVII 484

Query: 310 GFFALSLVGPFL 321
           GF A   + PF+
Sbjct: 485 GFLAGLWLAPFV 496


>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
           Binding Protein (PBP)-dependent ATP-Binding Cassette
           (ABC) transporters which generally bind type 2 PBPs.
           These types of transporters consist of a PBP, two TMs,
           and two cytoplasmic ABC ATPase subunits, and are mainly
           involved in importing solutes from the environment. The
           solute is captured by the PBP which delivers it to a
           gated translocation pathway formed by the two TMs. The
           two ABCs bind and hydrolyze ATP and drive the transport
           reaction. For these transporters the ABCs and TMs are on
           independent polypeptide chains. These systems transport
           a diverse range of substrates. Most are specific for a
           single substrate or a group of related substrates;
           however some transporters are more promiscuous,
           transporting structurally diverse substrates such as the
           histidine/lysine and arginine transporter in
           Enterobacteriaceae. In the latter case, this is achieved
           through binding different PBPs with different
           specificities to the TMs. For other promiscuous
           transporters such as the multiple-sugar transporter Msm
           of Streptococcus mutans, the PBP has a wide substrate
           specificity. These transporters include the
           maltose-maltodextrin, phosphate and sulfate
           transporters, among others..
          Length = 190

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316
           L+ T  +  IA L ++ +GLL+ I +A     KL  +++ I ++L+ +P++V G   + L
Sbjct: 1   LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLL 59

Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376
            G  L                  I     L A ++  +++ P+   +    + SIP+ L 
Sbjct: 60  FGVLLG---------------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLV 104

Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAA 428
           + +  LGA+  +  + +I P A P I   +++  +R +GE  +V    G  A
Sbjct: 105 EAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156


>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
           component [Posttranslational modification, protein
           turnover, chaperones].
          Length = 274

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 55/279 (19%), Positives = 111/279 (39%), Gaps = 21/279 (7%)

Query: 193 FLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFG 252
              R+ ++    +  G+ +           + +       + W   + AL S  V+    
Sbjct: 2   ARKRSRVIPGFGLLLGLTLLFLL-LILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALK 60

Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312
           L      T    F A L ++  GL +A  +  Y     + ++  + ++   +PT V G  
Sbjct: 61  L------TLLTAFAATLLNLVFGLPLAWVLVRY-DFPGKRLVDALVDLPFALPTAVAGIA 113

Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372
            L L GP     +  +  L+      F  A + L   + M  + +P+V    + V+  I 
Sbjct: 114 LLLLFGP-----NGLLGSLLAPLGIKF--AFTPLGVIVAMFFVSLPFVVRTVQPVLEEID 166

Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQF 432
           R   + +  LGA+  +T + VI P   P +    +++ +R+IGE   V++ AG       
Sbjct: 167 REYEEAARSLGASPLQTFRRVILPLLLPALLAGFILSFARSIGEFGAVLIIAGNT----- 221

Query: 433 NPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLF 471
            P+++ T   +      + DL+ ++  ++V   +   L 
Sbjct: 222 -PYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFILL 259


>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 225

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319
           +  +  I+ L  +P+G+ +A  +A    +  +++++ +  + + +P +V GF  L L G 
Sbjct: 12  SLKVALISTLLLLPLGIALAYLLARRRFR-GKSLLESLVLLPLVLPPVVLGFLLLVLFGR 70

Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLT-AGLVMG--IMLIPYVSSLSEDVISSIPRSLR 376
                    NG I    + +       +  G V+   ++ +P +         +I R L 
Sbjct: 71  ---------NGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELE 121

Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
           + +  LGA+R E    +  P A PGI   ++++ +R +GE    ++ AG
Sbjct: 122 EAARTLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAG 170


>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
           permease component II [Amino acid transport and
           metabolism].
          Length = 267

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 36/261 (13%)

Query: 231 FGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL 290
            G+V+ P F       +     L+  L  +  I  ++ L +  +G L A+ +A Y  +  
Sbjct: 41  LGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFR-G 99

Query: 291 RAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGL 350
           + +++ +  + + +P IV G   L L          +    + G + + + A  V     
Sbjct: 100 KNLLEGLILLPLVVPDIVTGIALLLL----------FAALGLPGGFWTIVLAHIVFA--- 146

Query: 351 VMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTA 410
                 +P+V  +    +    RSL + +  LGA+  +T + V  P   PGI    L+  
Sbjct: 147 ------LPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAF 200

Query: 411 SRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL 470
           + +  E +I    AG             TT+ ++I + +   +      T    AL   L
Sbjct: 201 TLSFDEFVITFFLAGP----------GFTTLPLQIYSMIRRGI------TPEINALSTLL 244

Query: 471 FCITFFLNIYAMYIMKKYQRK 491
             ++  L + A  ++++  RK
Sbjct: 245 LLLSLLLILLASRLLRRRARK 265


>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
           [Inorganic ion transport and metabolism].
          Length = 540

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 57/303 (18%), Positives = 101/303 (33%), Gaps = 38/303 (12%)

Query: 192 VFLLRNSLLLSIVISFGIIISLFANTFK--FFSIISATDFFFGIVWDPRFPALGSSNVMG 249
              L + LLL  ++    +       F         A D    ++ DP    +       
Sbjct: 5   RSPLGSILLLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRV------- 57

Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309
                  L  T  +  +  L SV +G+ +A  ++ Y     R +++ +  + + IP  V 
Sbjct: 58  -------LANTLILAVLVTLLSVVLGIPLAWLLSRYD-FPGRRLLRWLLALPLVIPPFVV 109

Query: 310 GFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVIS 369
               +SL GP     S  +  L+            +    L +     P    L    + 
Sbjct: 110 ALAWISLFGP-----SGPLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALE 164

Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429
           +IP SL + +  LGA+R +  + V  P   P IA   L+     + +    ++  G    
Sbjct: 165 TIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILGG---- 220

Query: 430 LQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489
                    TT+   I   +    D +      A  L L L  IT  L +    + +  Q
Sbjct: 221 -------GYTTLETAIYQAIMSSFDLA-----RAALLALLLLLITAALLLLERRLRRAKQ 268

Query: 490 RKY 492
           +  
Sbjct: 269 KST 271



 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 31/239 (12%)

Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312
               L+ +  +   A L +V + LL+A Y       +L  +++ ++ + + +P +V    
Sbjct: 331 FWQALLNSLLLALAAALLAVVLALLLA-YAVRRLRSRLSRLLERLSMLPLAVPGVV---L 386

Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372
           AL L+  F               Y+       ++ A  +     +P+        +  I 
Sbjct: 387 ALGLLLLF--------RAPDGLLYQPLYTLLILVLAYALR---FLPFAVRSLRAALRQID 435

Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQF 432
            SL + +  LGA+     + +  P   PG+  A  +  + +IGE    +L          
Sbjct: 436 PSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGS------- 488

Query: 433 NPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK 491
                  T+TV I N L      S  +   A AL L L  ++  L +    + +  +RK
Sbjct: 489 ---PGTRTLTVYIYNLL------SDGRYGDAAALALILLVVSLLLFLLLDRLGEGLRRK 538


>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
           permease component I [Amino acid transport and
           metabolism].
          Length = 287

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 22/302 (7%)

Query: 192 VFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQF 251
             L     LL       +++                       +   F     + ++   
Sbjct: 3   ALLRPAGALLIAPPLLWLLLFFLLPLLIVLVPSFLLPLLSFFDYSGVFTLGNYARLLTDS 62

Query: 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGF 311
             + +L+ + +I  +  L  + +G  +A ++A   P+      + +  +LV +P      
Sbjct: 63  LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRW-----RNLLLLLVILPFWTSLL 117

Query: 312 FALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGI--MLIPYVSSLSEDVIS 369
                    L    +    L+                 +++G+  + +P++       + 
Sbjct: 118 IRTYAWIVILGRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALE 177

Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429
            I  SL + +  LGA+  +T + VI P + PGI    L+     +G  +   L  G    
Sbjct: 178 KIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLGGPKV- 236

Query: 430 LQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489
                      I   I  Q     ++       A AL + L  +   L +  +   ++  
Sbjct: 237 ---------LMIGNLIYQQFLSARNWP-----FASALAVVLLLVVLLLLLLYLLFRRRRG 282

Query: 490 RK 491
            K
Sbjct: 283 AK 284


>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 222

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 31/219 (14%)

Query: 240 PALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAP------KKLRAV 293
                 +      L    + T Y+ F++ LF+  IGL + + +    P      K L  +
Sbjct: 1   MFFAMMSNDLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRI 60

Query: 294 IKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLV-M 352
           +  I  +L  IP I+     L  + P  R        LI G            TA +V +
Sbjct: 61  LSAIVNILRSIPFIIL----LVALIPLTR--------LIVGT-------SIGTTAAIVPL 101

Query: 353 GIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASR 412
            I   P+V+ L E  +  + + + + +  +GA+  + ++ V+ P A PG+   I +T   
Sbjct: 102 TIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLIS 161

Query: 413 TIGET-MIVVLAAG----VAARLQFNPFESMTTITVKIM 446
            IG + M   +  G    +A R  +  F +   +   ++
Sbjct: 162 LIGYSAMAGAIGGGGLGDLAIRYGYQRFNTDVMVVAVVI 200


>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
           component [Amino acid transport and metabolism].
          Length = 222

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 26/192 (13%)

Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319
           T  +  ++++  + +GLL+A+ M     K LR + +   E+  G P +V  FF    + P
Sbjct: 25  TLLLTLLSIVLGLVLGLLLAL-MRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLP 83

Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGS 379
            L                  IE      A + + +    Y++ +    I S+P+   + +
Sbjct: 84  LL-----------------GIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAA 126

Query: 380 LGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVL--------AAGVAARLQ 431
             LG T  +TM+YVI P A   I   +       I +T +V +        AA + A   
Sbjct: 127 RALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAART 186

Query: 432 FNPFESMTTITV 443
           F PFE      +
Sbjct: 187 FRPFEVYLLAAL 198


>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
           inner membrane component.  The alignments cover the most
           conserved region of the proteins, which is thought to be
           located in a cytoplasmic loop between two transmembrane
           domains. The members of this family have a variable
           number of transmembrane helices.
          Length = 183

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 275 GLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITG 334
           G+ + I  A    ++L  +++P+ ++L  +P+ V    A+ LV   +  I  +       
Sbjct: 1   GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFV---LAILLVVISILSILGHG------ 51

Query: 335 NYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVI 394
                     +L A ++  +    Y   +    + S+P  L + +  LGA+R +  + +I
Sbjct: 52  ----------ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKII 101

Query: 395 FPAAFPGIAGAILMTASRTIGETMIV 420
            P A P I   + +     +G  +++
Sbjct: 102 LPNALPPILTGLALAFGGALGGAVLL 127


>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
          Length = 237

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319
           T  +  IA L +   GLLIA  +  Y     + ++    ++   +PT V G    ++ G 
Sbjct: 60  TLSMALIAALINGFFGLLIAWVLVRYNFPG-KRLLDAAVDLPFALPTSVAGLTLATVYGD 118

Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML---IPYVSSLSEDVISSIPRSLR 376
                    NG I G+  S +  Q V T   V+  M+    P+V    + V+  I + L 
Sbjct: 119 ---------NGWI-GHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELE 168

Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
           + +  LGA+  +T   VIFP   P +   + +T SR IGE   +V+ + 
Sbjct: 169 EAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217


>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system,
           permease component [Amino acid transport and
           metabolism].
          Length = 290

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 30/232 (12%)

Query: 198 SLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLL 257
           S  L  ++     + L         I++   +F   +    F  LG   ++G  GL    
Sbjct: 36  SNPLEFLLDGLENLLLAVPPLLLILIVALLAWFASGLGLAIFTLLGLL-LIGNLGLWDQT 94

Query: 258 IGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLV 317
           + T  +   A L S+ IG+ + I+ A     ++  +++PI +++  +PT VY   A+ L 
Sbjct: 95  MQTLALVLTATLISIVIGIPLGIWAARS--PRVYRIVRPILDLMQTMPTFVYLIPAVMLF 152

Query: 318 GPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRD 377
           G           G + G   + I A              +P +  L+   I  +P  L +
Sbjct: 153 G----------LGNVPGLIATVIFA--------------MPPMIRLTNLGIRQVPAELIE 188

Query: 378 GSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429
            +   GAT  + +  V  P A P I   I  T    +    +VV+A+ + A 
Sbjct: 189 AADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALS---MVVIASMIGAG 237


>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
           components [Carbohydrate transport and metabolism].
          Length = 295

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 42/237 (17%), Positives = 91/237 (38%), Gaps = 15/237 (6%)

Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316
           L  T     I++   + +GLL+A+ +      + R   + +  +   I ++V G     L
Sbjct: 70  LKNTLVFTVISVPLQLVLGLLLALLL--NRKLRGRGFFRTLFFLPWAISSVVAGLIWKWL 127

Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVM--GIMLIPYVSSLSEDVISSIPRS 374
             P    ++  +  L      +++   +     +++        +V  L    + SIP+ 
Sbjct: 128 FNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKE 187

Query: 375 LRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNP 434
           L + +   GA+  +  + +  P   P I   +++          ++ L  G        P
Sbjct: 188 LYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLTG------GGP 241

Query: 435 FESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK 491
             + TT+   I     G LDF       A A+ + LF I   L +  + ++++ +R+
Sbjct: 242 GNATTTLAYYIYRTAFGGLDFG-----YAAAIAVILFLIVLILTVVQLRLLRRKERR 293


>gnl|CDD|34280 COG4662, TupA, ABC-type tungstate transport system, periplasmic
           component [Coenzyme metabolism].
          Length = 227

 Score = 37.9 bits (88), Expect = 0.006
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 38/237 (16%)

Query: 247 VMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT 306
                 LI ++  T Y+  I++  +  +G+ +A  +A     + +  IK I   L+ +PT
Sbjct: 15  FSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLA-LREFRGKRFIKMIINTLLSMPT 73

Query: 307 IVYG---FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMG--IMLIPYVS 361
           ++ G   +  LS  GP       + N L T                +++G  I+++P V 
Sbjct: 74  VLVGLLLYLLLSRSGPLG-----WFNLLFT-------------QDAMILGQAILILPLVI 115

Query: 362 SLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVV 421
           +     + S+   L++ +  LGA+  +    V   A F  +A A+     R + E     
Sbjct: 116 AFVLTALESVDPRLKELARSLGASPLKLASTVFREARFGLMA-AVAAGFGRAVAEV---- 170

Query: 422 LAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLN 478
              GVA  +  N       IT  I       L+ +        ALG+ L  I   LN
Sbjct: 171 ---GVAMMVGGNIRGRTRVITTAI------SLETNKGNFAQGIALGIVLLAIALALN 218


>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
           permease component [Amino acid transport and
           metabolism].
          Length = 221

 Score = 37.4 bits (87), Expect = 0.008
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 29/176 (16%)

Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312
           L+ L +    +  +A+L ++ IG+ + I +     ++L  ++  +  +L  IP+      
Sbjct: 24  LLALTLQHLLLVLLAVLIAILIGVPLGILVTR--SRRLAGLVLGVANVLQTIPS------ 75

Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372
            L+L+   +  + I +   I      F+ +   +      G+               S+P
Sbjct: 76  -LALLALLIPVLGIGLTPAIIA---LFLYSLLPIVRNTYTGLA--------------SVP 117

Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAA 428
            S+ + + G+G TR + +  V  P A P I   I       IG      +AA + A
Sbjct: 118 PSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIG---TATIAALIGA 170


>gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
           permease component [Inorganic ion transport and
           metabolism].
          Length = 283

 Score = 37.2 bits (86), Expect = 0.010
 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 27/214 (12%)

Query: 196 RNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIP 255
              L+L ++I+  +  S F     F  +           +   FP   +        L  
Sbjct: 31  FRLLILLVIIALLVWSSWFFTEVDFPLLFIGGANQMADFFSDFFPPDFALFSQLPDILTA 90

Query: 256 LLIGTFYIGFIAMLFSVPIGLLIAIYMAE--YAPKKLRAVIKPITEMLVGIPTIVYGFFA 313
           LL  T  I F   L +  + + +A   A      + +   ++ + + +  IP +V+    
Sbjct: 91  LLQ-TLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLF 149

Query: 314 LSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPR 373
           ++  G                               L +GI  I  +  L  + + SI  
Sbjct: 150 VAAFGL------------------------GPFAGVLALGIYTIGILGKLYAEALESIDT 185

Query: 374 SLRDGSLGLGATRSETMKYVIFPAAFPGIAGAIL 407
              +     GA+R + + + + P   P      L
Sbjct: 186 GPGEALRATGASRLQLILFGVLPQIKPNFISYSL 219


>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 289

 Score = 36.0 bits (83), Expect = 0.022
 Identities = 30/142 (21%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 190 FIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMG 249
             + L + ++L  I++   +++++FA     +  +        +        LG+ N +G
Sbjct: 16  RRLDLNKLAILGLIILLLLVLLAIFAPLIAPYDPLDLDLGARLLPPGSWAHWLGTDN-LG 74

Query: 250 QFGLIPLLIG---TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT 306
           +  L  LL G   +  IG +A+L S+ IG L+ + +A Y    +  V+  IT++ +  P+
Sbjct: 75  RDILSRLLYGARISLLIGLLAVLISLVIGTLLGL-LAGYFGGWVDRVLMRITDIFLAFPS 133

Query: 307 IVYGFFALSLVGPFLRDISIYM 328
           ++     ++++GP L ++ + +
Sbjct: 134 LLLAILLVAILGPGLLNLILAL 155


>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
           component [Amino acid transport and metabolism].
          Length = 230

 Score = 34.8 bits (80), Expect = 0.061
 Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 269 LFSVPIGLLIAIYMA---EYAPKKLRAVIKPITEMLVGIP---TIVYGFFALSLVGPFLR 322
           + S+ +GLL+ +  A       + LR +    T ++ G+P    I+  +F   ++   L 
Sbjct: 22  VCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLA 81

Query: 323 DISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGL 382
           D++  +          FI+    +   + +G++   Y +        ++P+   + +  L
Sbjct: 82  DVTGAL-------GVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARAL 134

Query: 383 GATRSETMKYVIFPA----AFPGIAGAILMTASRTIGETMI----VVLAAGVAARLQFNP 434
           G +RS+T + ++ P     A PG+    L+    T   ++I    ++    +AA     P
Sbjct: 135 GLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLNDLMRQTQLAAGSTKEP 194

Query: 435 F 435
           F
Sbjct: 195 F 195


>gnl|CDD|39607 KOG4406, KOG4406, KOG4406, CDC42 Rho GTPase-activating protein
           [Signal transduction mechanisms, Cytoskeleton].
          Length = 467

 Score = 33.8 bits (77), Expect = 0.12
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 47  ALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSL 106
           ALY + P  FI ++W LF P +I  + +     Y NSL+E    F    L+++      L
Sbjct: 168 ALYVVHPTWFIKVIWNLFKP-LISLKFTRKI-IYFNSLSE---LFEALKLNRLKLPPEVL 222

Query: 107 DPDTKFK 113
             D K  
Sbjct: 223 KHDDKLL 229


>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 317

 Score = 33.5 bits (77), Expect = 0.13
 Identities = 14/102 (13%), Positives = 43/102 (42%)

Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319
           T  +  +A++ +V +G+ + I  A      +  +++ ++ + + IP+   G   + L   
Sbjct: 98  TLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSV 157

Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVS 361
            L  + +   G            + ++   L +G++ +  ++
Sbjct: 158 KLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIA 199


>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
           permease component [Inorganic ion transport and
           metabolism].
          Length = 523

 Score = 33.4 bits (76), Expect = 0.16
 Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 26/169 (15%)

Query: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYG 310
             L+   +    I  ++ L S+ +G  IA+        ++  + +P+ + L   P  +Y 
Sbjct: 317 LYLLYDYLRVVVILALSFLISIFLGYSIALR------PRVEGIGQPLIQFLAAFPAPIYF 370

Query: 311 FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISS 370
               + +  F+    I+++ L       FI     +   ++ G                +
Sbjct: 371 PLLFAAIKTFILTPEIWLSPLG------FIGTFYYIFYNVIAGA--------------KA 410

Query: 371 IPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMI 419
           +P    + +           + +I P  FP +   +  T        ++
Sbjct: 411 LPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIV 459


>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score = 30.5 bits (69), Expect = 1.1
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 30/142 (21%)

Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324
            +A +  +P+G+L+ +       + L  ++ P+ ++L  IP +     A+   G  + + 
Sbjct: 75  ALAAVLGIPLGILMGLS------RLLERLLDPLVQVLRPIPPLALAPLAILWFG--IGET 126

Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384
           S  +                     + +     P + +  + V  S+   L + +  LGA
Sbjct: 127 SKIV---------------------IAVLGAFFPILINTLDGV-RSVDPDLLELARTLGA 164

Query: 385 TRSETMKYVIFPAAFPGIAGAI 406
           +R + ++ VI PAA P I   +
Sbjct: 165 SRWQILRKVILPAALPYIFTGL 186


>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease
           component [Amino acid transport and metabolism].
          Length = 397

 Score = 29.9 bits (67), Expect = 1.5
 Identities = 25/143 (17%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKK------LRAVIKPITEMLVGIPTIVYGF--FALS 315
           GFIA + ++ + ++ ++++A +A  +                +++G+P +        L+
Sbjct: 186 GFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLT 245

Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375
              P L   ++    ++   + +   A S  TA  +  I+            I ++ +  
Sbjct: 246 FDVPALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIV---------RAGIQAVSKGQ 296

Query: 376 RDGSLGLGATRSETMKYVIFPAA 398
            + +  LG   S T++ VI P A
Sbjct: 297 TEAARSLGLRSSLTLRLVIVPQA 319


>gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate
           amidotransferase [Nucleotide transport and metabolism].
          Length = 474

 Score = 29.9 bits (67), Expect = 1.7
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 338 SFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPA 397
           S  E QSV T  L  G  L    + +  DV+  +P S    +LG               A
Sbjct: 266 SIFEGQSVYTVRLQCGEQL-ATEAPVDADVVIPVPDSGTTAALGY--------------A 310

Query: 398 AFPGIAGAILMTASRTIGETMI 419
           A  G+    ++  +R +G T I
Sbjct: 311 AKSGLPYQEVLIRNRYVGRTFI 332


>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
           component [Carbohydrate transport and metabolism].
          Length = 282

 Score = 29.0 bits (65), Expect = 2.8
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 357 IPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416
           IP  + L +    +IP+SL + +   GATR +  + ++ P + P +A   L+      G+
Sbjct: 155 IPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGD 214

Query: 417 TMI 419
            ++
Sbjct: 215 FIL 217


>gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase,
           insulinase superfamily [Posttranslational modification,
           protein turnover, chaperones].
          Length = 1022

 Score = 28.9 bits (64), Expect = 3.4
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 50  SIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQF-SYSILHKIVDSLSSLDP 108
           S+ PY+F+F      SP ++D       +  L S  +  + F S  I H I   +S L  
Sbjct: 577 SLRPYLFLFTDLLFESPAMLD---GTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633

Query: 109 D-TKFKIQKGDGDISDLLRY-QNVISGYV 135
                +I+ G      L+++ Q  + G V
Sbjct: 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVV 662


>gnl|CDD|33888 COG4132, COG4132, ABC-type uncharacterized transport system,
           permease component [General function prediction only].
          Length = 282

 Score = 28.3 bits (63), Expect = 5.5
 Identities = 39/230 (16%), Positives = 87/230 (37%), Gaps = 16/230 (6%)

Query: 263 IGFIAMLFSVPIGLLIAIYMAEYA-PKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFL 321
           I F + L  + IG L+A  +     P  +R+ +   + +      +   F  ++ +G   
Sbjct: 64  ISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLG-RN 122

Query: 322 RDISIYMNGLITGN-YKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSL 380
             +++++  L   N Y +     S     +      IP +  +       + +  R+ + 
Sbjct: 123 GLVTVFLKTLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAA 182

Query: 381 GLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTT 440
            LGAT  +  + V  P  +P + G  ++  +   G         G           S+  
Sbjct: 183 ILGATGWQYWRMVALPILWPSLLGTFVLLFANAFGAYATAYALTG----------SSLNI 232

Query: 441 ITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQR 490
           + + +  Q+ GD+        + +AL   +  IT   N+  +++ K+ +R
Sbjct: 233 VPILLYAQIRGDV---LHNPNLGYALAFGMIVITGVANLLYIWLRKRSER 279


>gnl|CDD|29357 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a
           key role in the synthesis of the active coenzyme
           pyridoxal-5'-phosphate  (PLP), by catalyzing the
           phosphorylation of the precursor vitamin B6  in the
           presence of Zn2+ and ATP. Mammals are unable to
           synthesize PLP de novo and require its precursors in the
           form of vitamin B6 (pyridoxal, pyridoxine, and
           pyridoxamine) from their diet. Pyridoxal kinase encoding
           genes are also found in many other species including
           yeast and bacteria..
          Length = 254

 Score = 27.9 bits (62), Expect = 7.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 90  QFS----YSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEA 143
           QFS    Y      V S   L+      + +G   +  LL Y  V++GY+ S   +EA
Sbjct: 37  QFSNHTGYGTWTGFVLSAEELE-----DLLEGLEALGLLLEYDAVLTGYLGSAEQVEA 89


>gnl|CDD|39130 KOG3927, KOG3927, KOG3927, Na+/K+ ATPase, beta subunit [Inorganic
          ion transport and metabolism].
          Length = 300

 Score = 27.2 bits (60), Expect = 9.6
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 43 GVYVALYSIIPYIFIFLLWFLF---SPYIIDFQVS 74
            Y+  Y ++  +F   +WF+     P +  ++ S
Sbjct: 49 LFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYKDS 83


>gnl|CDD|36465 KOG1251, KOG1251, KOG1251, Serine racemase [Signal transduction
           mechanisms, Amino acid transport and metabolism].
          Length = 323

 Score = 27.2 bits (60), Expect = 9.7
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 352 MGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS 411
           +G +  P +  L +D+++     +++  L L   R   MK V+ P A  G A  +     
Sbjct: 241 LGPLTWPIIRDLVDDILTVSEDEIKEA-LKLIWER---MKVVVEPTAALGFAAVLSHK-F 295

Query: 412 RTIGETMIVVLAAG 425
               + + ++L+ G
Sbjct: 296 ALNIKRIGIILSGG 309


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.330    0.145    0.425 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,157,502
Number of extensions: 363587
Number of successful extensions: 2003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1927
Number of HSP's successfully gapped: 261
Length of query: 493
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 395
Effective length of database: 4,146,055
Effective search space: 1637691725
Effective search space used: 1637691725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.5 bits)