RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] (493 letters) >gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 310 Score = 239 bits (612), Expect = 1e-63 Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 16/322 (4%) Query: 173 AILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIIS-ATDFFF 231 A + R EK LL + ++ ++ I++ L F + F F Sbjct: 3 APAKATQKIKKRKRKEKLFKALLFAAAVIVVLALLLILVFLLIEAIPAFQKFGLSLFFLF 62 Query: 232 GIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYA-PKKL 290 G W+P +N Q+G +P + GT IA+L +VP+G+ AI+++EYA P++L Sbjct: 63 GTEWNP-------TNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRL 115 Query: 291 RAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGL 350 R V+KP E+L GIP++VYGFF L ++ PFLRD+ G G S+LTAG+ Sbjct: 116 RRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVF----GPPLGFNLG-PFGISILTAGI 170 Query: 351 VMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTA 410 V+ IM++P ++SLS D + ++PRSLR+ + LGAT+ ET++ VI PAA GI GA+++ Sbjct: 171 VLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGL 230 Query: 411 SRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL 470 R +GETM V + G AR+ + F TT+T I N+ G+ T FALGL L Sbjct: 231 GRALGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANE-FGEASG-GLHTSALFALGLVL 288 Query: 471 FCITFFLNIYAMYIMKKYQRKY 492 F IT LNI A YI+++ +RKY Sbjct: 289 FVITLLLNILARYIVRRRRRKY 310 >gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 292 Score = 137 bits (347), Expect = 6e-33 Identities = 77/319 (24%), Positives = 139/319 (43%), Gaps = 36/319 (11%) Query: 178 KPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDP 237 + R K L+ + ++++ I+ ++ + + Sbjct: 6 RKLSMRRRIKNKLATGLVFLAAAVALLPLLWILWTILIRGIP------------ALSLNL 53 Query: 238 RFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPK-KLRAVIKP 296 F S G+ P ++GT Y+ +A+L VP+G+ IY+AEYA K +L VI+ Sbjct: 54 EFFTGSPSPPGEGGGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRF 113 Query: 297 ITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML 356 ++L +P+IVYG F L L S L L + +++ Sbjct: 114 AIDILASVPSIVYGLFGLGFFVVTLG------------------FGFSALAGALALALLM 155 Query: 357 IPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416 +P V +E+ + ++P SLR+ + LGAT+ +T+ V+ PAA PGI +++ +R GE Sbjct: 156 LPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGE 215 Query: 417 TMIVVLAAGVAARLQFNP---FESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCI 473 T ++ AG++A P + + V I T S +A+ L L I Sbjct: 216 TAPLLFTAGMSANSPSWPTDLLTPVAALPVHIYMLATSGP--SPEAQELAWGAALVLLLI 273 Query: 474 TFFLNIYAMYIMKKYQRKY 492 LN+ A + +++++K Sbjct: 274 VLLLNLLARLLRRRFRKKL 292 >gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 733 Score = 122 bits (306), Expect = 3e-28 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV-YGFFALSLVGP--- 319 G +A++ +P+ +L+ ++ PK + L+ IP ++ G AL L Sbjct: 502 GVLALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELEN 561 Query: 320 --FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRD 377 F D+ +++ + ++ L G MG +IP + S++ED I S+P+SL D Sbjct: 562 ALFGGDLRVWL-----AQDGIGYDQRNALVVGFAMGFAVIPTIFSIAEDAIFSVPKSLSD 616 Query: 378 GSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFES 437 GSL LGAT +T+ YV+ A PGI AI++ R +GETMIV++A G L +N FE Sbjct: 617 GSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLLDWNIFEG 676 Query: 438 MTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE 493 M T+ I ++ + + S V F L L TF +N A ++ ++ + KY Sbjct: 677 MRTLAANIAVEMP-ESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLREKYR 731 Score = 66.2 bits (161), Expect = 2e-11 Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309 +F L+P+ GT AMLF++P+ + AIY A + +R V+KP E++ +PT++ Sbjct: 425 KFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVII 484 Query: 310 GFFALSLVGPFL 321 GF A + PF+ Sbjct: 485 GFLAGLWLAPFV 496 >gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.. Length = 190 Score = 69.2 bits (170), Expect = 2e-12 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 16/172 (9%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316 L+ T + IA L ++ +GLL+ I +A KL +++ I ++L+ +P++V G + L Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLL 59 Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376 G L I L A ++ +++ P+ + + SIP+ L Sbjct: 60 FGVLLG---------------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLV 104 Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAA 428 + + LGA+ + + +I P A P I +++ +R +GE +V G A Sbjct: 105 EAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156 >gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]. Length = 274 Score = 61.7 bits (150), Expect = 4e-10 Identities = 55/279 (19%), Positives = 111/279 (39%), Gaps = 21/279 (7%) Query: 193 FLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFG 252 R+ ++ + G+ + + + + W + AL S V+ Sbjct: 2 ARKRSRVIPGFGLLLGLTLLFLL-LILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALK 60 Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312 L T F A L ++ GL +A + Y + ++ + ++ +PT V G Sbjct: 61 L------TLLTAFAATLLNLVFGLPLAWVLVRY-DFPGKRLVDALVDLPFALPTAVAGIA 113 Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372 L L GP + + L+ F A + L + M + +P+V + V+ I Sbjct: 114 LLLLFGP-----NGLLGSLLAPLGIKF--AFTPLGVIVAMFFVSLPFVVRTVQPVLEEID 166 Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQF 432 R + + LGA+ +T + VI P P + +++ +R+IGE V++ AG Sbjct: 167 REYEEAARSLGASPLQTFRRVILPLLLPALLAGFILSFARSIGEFGAVLIIAGNT----- 221 Query: 433 NPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLF 471 P+++ T + + DL+ ++ ++V + L Sbjct: 222 -PYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFILL 259 >gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]. Length = 225 Score = 59.4 bits (144), Expect = 2e-09 Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 13/169 (7%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 + + I+ L +P+G+ +A +A + +++++ + + + +P +V GF L L G Sbjct: 12 SLKVALISTLLLLPLGIALAYLLARRRFR-GKSLLESLVLLPLVLPPVVLGFLLLVLFGR 70 Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLT-AGLVMG--IMLIPYVSSLSEDVISSIPRSLR 376 NG I + + + G V+ ++ +P + +I R L Sbjct: 71 ---------NGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELE 121 Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 + + LGA+R E + P A PGI ++++ +R +GE ++ AG Sbjct: 122 EAARTLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAG 170 >gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length = 267 Score = 57.9 bits (140), Expect = 7e-09 Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 36/261 (13%) Query: 231 FGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL 290 G+V+ P F + L+ L + I ++ L + +G L A+ +A Y + Sbjct: 41 LGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFR-G 99 Query: 291 RAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGL 350 + +++ + + + +P IV G L L + + G + + + A V Sbjct: 100 KNLLEGLILLPLVVPDIVTGIALLLL----------FAALGLPGGFWTIVLAHIVFA--- 146 Query: 351 VMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTA 410 +P+V + + RSL + + LGA+ +T + V P PGI L+ Sbjct: 147 ------LPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAF 200 Query: 411 SRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL 470 + + E +I AG TT+ ++I + + + T AL L Sbjct: 201 TLSFDEFVITFFLAGP----------GFTTLPLQIYSMIRRGI------TPEINALSTLL 244 Query: 471 FCITFFLNIYAMYIMKKYQRK 491 ++ L + A ++++ RK Sbjct: 245 LLLSLLLILLASRLLRRRARK 265 >gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length = 540 Score = 54.5 bits (131), Expect = 6e-08 Identities = 57/303 (18%), Positives = 101/303 (33%), Gaps = 38/303 (12%) Query: 192 VFLLRNSLLLSIVISFGIIISLFANTFK--FFSIISATDFFFGIVWDPRFPALGSSNVMG 249 L + LLL ++ + F A D ++ DP + Sbjct: 5 RSPLGSILLLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRV------- 57 Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309 L T + + L SV +G+ +A ++ Y R +++ + + + IP V Sbjct: 58 -------LANTLILAVLVTLLSVVLGIPLAWLLSRYD-FPGRRLLRWLLALPLVIPPFVV 109 Query: 310 GFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVIS 369 +SL GP S + L+ + L + P L + Sbjct: 110 ALAWISLFGP-----SGPLAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALE 164 Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429 +IP SL + + LGA+R + + V P P IA L+ + + ++ G Sbjct: 165 TIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILGG---- 220 Query: 430 LQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489 TT+ I + D + A L L L IT L + + + Q Sbjct: 221 -------GYTTLETAIYQAIMSSFDLA-----RAALLALLLLLITAALLLLERRLRRAKQ 268 Query: 490 RKY 492 + Sbjct: 269 KST 271 Score = 52.2 bits (125), Expect = 3e-07 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 31/239 (12%) Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312 L+ + + A L +V + LL+A Y +L +++ ++ + + +P +V Sbjct: 331 FWQALLNSLLLALAAALLAVVLALLLA-YAVRRLRSRLSRLLERLSMLPLAVPGVV---L 386 Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372 AL L+ F Y+ ++ A + +P+ + I Sbjct: 387 ALGLLLLF--------RAPDGLLYQPLYTLLILVLAYALR---FLPFAVRSLRAALRQID 435 Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQF 432 SL + + LGA+ + + P PG+ A + + +IGE +L Sbjct: 436 PSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGS------- 488 Query: 433 NPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK 491 T+TV I N L S + A AL L L ++ L + + + +RK Sbjct: 489 ---PGTRTLTVYIYNLL------SDGRYGDAAALALILLVVSLLLFLLLDRLGEGLRRK 538 >gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]. Length = 287 Score = 48.7 bits (116), Expect = 4e-06 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 22/302 (7%) Query: 192 VFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQF 251 L LL +++ + F + ++ Sbjct: 3 ALLRPAGALLIAPPLLWLLLFFLLPLLIVLVPSFLLPLLSFFDYSGVFTLGNYARLLTDS 62 Query: 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGF 311 + +L+ + +I + L + +G +A ++A P+ + + +LV +P Sbjct: 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRW-----RNLLLLLVILPFWTSLL 117 Query: 312 FALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGI--MLIPYVSSLSEDVIS 369 L + L+ +++G+ + +P++ + Sbjct: 118 IRTYAWIVILGRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALE 177 Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429 I SL + + LGA+ +T + VI P + PGI L+ +G + L G Sbjct: 178 KIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLGGPKV- 236 Query: 430 LQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489 I I Q ++ A AL + L + L + + ++ Sbjct: 237 ---------LMIGNLIYQQFLSARNWP-----FASALAVVLLLVVLLLLLLYLLFRRRRG 282 Query: 490 RK 491 K Sbjct: 283 AK 284 >gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]. Length = 222 Score = 47.8 bits (114), Expect = 6e-06 Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 31/219 (14%) Query: 240 PALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAP------KKLRAV 293 + L + T Y+ F++ LF+ IGL + + + P K L + Sbjct: 1 MFFAMMSNDLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRI 60 Query: 294 IKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLV-M 352 + I +L IP I+ L + P R LI G TA +V + Sbjct: 61 LSAIVNILRSIPFIIL----LVALIPLTR--------LIVGT-------SIGTTAAIVPL 101 Query: 353 GIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASR 412 I P+V+ L E + + + + + + +GA+ + ++ V+ P A PG+ I +T Sbjct: 102 TIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLIS 161 Query: 413 TIGET-MIVVLAAG----VAARLQFNPFESMTTITVKIM 446 IG + M + G +A R + F + + ++ Sbjct: 162 LIGYSAMAGAIGGGGLGDLAIRYGYQRFNTDVMVVAVVI 200 >gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 222 Score = 47.4 bits (113), Expect = 8e-06 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 26/192 (13%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 T + ++++ + +GLL+A+ M K LR + + E+ G P +V FF + P Sbjct: 25 TLLLTLLSIVLGLVLGLLLAL-MRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLP 83 Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGS 379 L IE A + + + Y++ + I S+P+ + + Sbjct: 84 LL-----------------GIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAA 126 Query: 380 LGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVL--------AAGVAARLQ 431 LG T +TM+YVI P A I + I +T +V + AA + A Sbjct: 127 RALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAART 186 Query: 432 FNPFESMTTITV 443 F PFE + Sbjct: 187 FRPFEVYLLAAL 198 >gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Length = 183 Score = 47.3 bits (113), Expect = 1e-05 Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 19/146 (13%) Query: 275 GLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITG 334 G+ + I A ++L +++P+ ++L +P+ V A+ LV + I + Sbjct: 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFV---LAILLVVISILSILGHG------ 51 Query: 335 NYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVI 394 +L A ++ + Y + + S+P L + + LGA+R + + +I Sbjct: 52 ----------ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKII 101 Query: 395 FPAAFPGIAGAILMTASRTIGETMIV 420 P A P I + + +G +++ Sbjct: 102 LPNALPPILTGLALAFGGALGGAVLL 127 >gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional. Length = 237 Score = 46.5 bits (111), Expect = 2e-05 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 14/169 (8%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 T + IA L + GLLIA + Y + ++ ++ +PT V G ++ G Sbjct: 60 TLSMALIAALINGFFGLLIAWVLVRYNFPG-KRLLDAAVDLPFALPTSVAGLTLATVYGD 118 Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML---IPYVSSLSEDVISSIPRSLR 376 NG I G+ S + Q V T V+ M+ P+V + V+ I + L Sbjct: 119 ---------NGWI-GHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELE 168 Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 + + LGA+ +T VIFP P + + +T SR IGE +V+ + Sbjct: 169 EAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISS 217 >gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]. Length = 290 Score = 40.9 bits (96), Expect = 8e-04 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 30/232 (12%) Query: 198 SLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLL 257 S L ++ + L I++ +F + F LG ++G GL Sbjct: 36 SNPLEFLLDGLENLLLAVPPLLLILIVALLAWFASGLGLAIFTLLGLL-LIGNLGLWDQT 94 Query: 258 IGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLV 317 + T + A L S+ IG+ + I+ A ++ +++PI +++ +PT VY A+ L Sbjct: 95 MQTLALVLTATLISIVIGIPLGIWAARS--PRVYRIVRPILDLMQTMPTFVYLIPAVMLF 152 Query: 318 GPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRD 377 G G + G + I A +P + L+ I +P L + Sbjct: 153 G----------LGNVPGLIATVIFA--------------MPPMIRLTNLGIRQVPAELIE 188 Query: 378 GSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429 + GAT + + V P A P I I T + +VV+A+ + A Sbjct: 189 AADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALS---MVVIASMIGAG 237 >gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length = 295 Score = 38.7 bits (90), Expect = 0.004 Identities = 42/237 (17%), Positives = 91/237 (38%), Gaps = 15/237 (6%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316 L T I++ + +GLL+A+ + + R + + + I ++V G L Sbjct: 70 LKNTLVFTVISVPLQLVLGLLLALLL--NRKLRGRGFFRTLFFLPWAISSVVAGLIWKWL 127 Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVM--GIMLIPYVSSLSEDVISSIPRS 374 P ++ + L +++ + +++ +V L + SIP+ Sbjct: 128 FNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKE 187 Query: 375 LRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNP 434 L + + GA+ + + + P P I +++ ++ L G P Sbjct: 188 LYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLTG------GGP 241 Query: 435 FESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK 491 + TT+ I G LDF A A+ + LF I L + + ++++ +R+ Sbjct: 242 GNATTTLAYYIYRTAFGGLDFG-----YAAAIAVILFLIVLILTVVQLRLLRRKERR 293 >gnl|CDD|34280 COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]. Length = 227 Score = 37.9 bits (88), Expect = 0.006 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 38/237 (16%) Query: 247 VMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT 306 LI ++ T Y+ I++ + +G+ +A +A + + IK I L+ +PT Sbjct: 15 FSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLA-LREFRGKRFIKMIINTLLSMPT 73 Query: 307 IVYG---FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMG--IMLIPYVS 361 ++ G + LS GP + N L T +++G I+++P V Sbjct: 74 VLVGLLLYLLLSRSGPLG-----WFNLLFT-------------QDAMILGQAILILPLVI 115 Query: 362 SLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVV 421 + + S+ L++ + LGA+ + V A F +A A+ R + E Sbjct: 116 AFVLTALESVDPRLKELARSLGASPLKLASTVFREARFGLMA-AVAAGFGRAVAEV---- 170 Query: 422 LAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLN 478 GVA + N IT I L+ + ALG+ L I LN Sbjct: 171 ---GVAMMVGGNIRGRTRVITTAI------SLETNKGNFAQGIALGIVLLAIALALN 218 >gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]. Length = 221 Score = 37.4 bits (87), Expect = 0.008 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 29/176 (16%) Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFF 312 L+ L + + +A+L ++ IG+ + I + ++L ++ + +L IP+ Sbjct: 24 LLALTLQHLLLVLLAVLIAILIGVPLGILVTR--SRRLAGLVLGVANVLQTIPS------ 75 Query: 313 ALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIP 372 L+L+ + + I + I F+ + + G+ S+P Sbjct: 76 -LALLALLIPVLGIGLTPAIIA---LFLYSLLPIVRNTYTGLA--------------SVP 117 Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAA 428 S+ + + G+G TR + + V P A P I I IG +AA + A Sbjct: 118 PSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIG---TATIAALIGA 170 >gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 283 Score = 37.2 bits (86), Expect = 0.010 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 27/214 (12%) Query: 196 RNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIP 255 L+L ++I+ + S F F + + FP + L Sbjct: 31 FRLLILLVIIALLVWSSWFFTEVDFPLLFIGGANQMADFFSDFFPPDFALFSQLPDILTA 90 Query: 256 LLIGTFYIGFIAMLFSVPIGLLIAIYMAE--YAPKKLRAVIKPITEMLVGIPTIVYGFFA 313 LL T I F L + + + +A A + + ++ + + + IP +V+ Sbjct: 91 LLQ-TLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLF 149 Query: 314 LSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPR 373 ++ G L +GI I + L + + SI Sbjct: 150 VAAFGL------------------------GPFAGVLALGIYTIGILGKLYAEALESIDT 185 Query: 374 SLRDGSLGLGATRSETMKYVIFPAAFPGIAGAIL 407 + GA+R + + + + P P L Sbjct: 186 GPGEALRATGASRLQLILFGVLPQIKPNFISYSL 219 >gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 289 Score = 36.0 bits (83), Expect = 0.022 Identities = 30/142 (21%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 190 FIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMG 249 + L + ++L I++ +++++FA + + + LG+ N +G Sbjct: 16 RRLDLNKLAILGLIILLLLVLLAIFAPLIAPYDPLDLDLGARLLPPGSWAHWLGTDN-LG 74 Query: 250 QFGLIPLLIG---TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT 306 + L LL G + IG +A+L S+ IG L+ + +A Y + V+ IT++ + P+ Sbjct: 75 RDILSRLLYGARISLLIGLLAVLISLVIGTLLGL-LAGYFGGWVDRVLMRITDIFLAFPS 133 Query: 307 IVYGFFALSLVGPFLRDISIYM 328 ++ ++++GP L ++ + + Sbjct: 134 LLLAILLVAILGPGLLNLILAL 155 >gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]. Length = 230 Score = 34.8 bits (80), Expect = 0.061 Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 21/181 (11%) Query: 269 LFSVPIGLLIAIYMA---EYAPKKLRAVIKPITEMLVGIP---TIVYGFFALSLVGPFLR 322 + S+ +GLL+ + A + LR + T ++ G+P I+ +F ++ L Sbjct: 22 VCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLA 81 Query: 323 DISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGL 382 D++ + FI+ + + +G++ Y + ++P+ + + L Sbjct: 82 DVTGAL-------GVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARAL 134 Query: 383 GATRSETMKYVIFPA----AFPGIAGAILMTASRTIGETMI----VVLAAGVAARLQFNP 434 G +RS+T + ++ P A PG+ L+ T ++I ++ +AA P Sbjct: 135 GLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLNDLMRQTQLAAGSTKEP 194 Query: 435 F 435 F Sbjct: 195 F 195 >gnl|CDD|39607 KOG4406, KOG4406, KOG4406, CDC42 Rho GTPase-activating protein [Signal transduction mechanisms, Cytoskeleton]. Length = 467 Score = 33.8 bits (77), Expect = 0.12 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 47 ALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSL 106 ALY + P FI ++W LF P +I + + Y NSL+E F L+++ L Sbjct: 168 ALYVVHPTWFIKVIWNLFKP-LISLKFTRKI-IYFNSLSE---LFEALKLNRLKLPPEVL 222 Query: 107 DPDTKFK 113 D K Sbjct: 223 KHDDKLL 229 >gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 317 Score = 33.5 bits (77), Expect = 0.13 Identities = 14/102 (13%), Positives = 43/102 (42%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 T + +A++ +V +G+ + I A + +++ ++ + + IP+ G + L Sbjct: 98 TLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSV 157 Query: 320 FLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVS 361 L + + G + ++ L +G++ + ++ Sbjct: 158 KLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIA 199 >gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]. Length = 523 Score = 33.4 bits (76), Expect = 0.16 Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 26/169 (15%) Query: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYG 310 L+ + I ++ L S+ +G IA+ ++ + +P+ + L P +Y Sbjct: 317 LYLLYDYLRVVVILALSFLISIFLGYSIALR------PRVEGIGQPLIQFLAAFPAPIYF 370 Query: 311 FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISS 370 + + F+ I+++ L FI + ++ G + Sbjct: 371 PLLFAAIKTFILTPEIWLSPLG------FIGTFYYIFYNVIAGA--------------KA 410 Query: 371 IPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMI 419 +P + + + +I P FP + + T ++ Sbjct: 411 LPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIV 459 >gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 258 Score = 30.5 bits (69), Expect = 1.1 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 30/142 (21%) Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324 +A + +P+G+L+ + + L ++ P+ ++L IP + A+ G + + Sbjct: 75 ALAAVLGIPLGILMGLS------RLLERLLDPLVQVLRPIPPLALAPLAILWFG--IGET 126 Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384 S + + + P + + + V S+ L + + LGA Sbjct: 127 SKIV---------------------IAVLGAFFPILINTLDGV-RSVDPDLLELARTLGA 164 Query: 385 TRSETMKYVIFPAAFPGIAGAI 406 +R + ++ VI PAA P I + Sbjct: 165 SRWQILRKVILPAALPYIFTGL 186 >gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 397 Score = 29.9 bits (67), Expect = 1.5 Identities = 25/143 (17%), Positives = 58/143 (40%), Gaps = 17/143 (11%) Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKK------LRAVIKPITEMLVGIPTIVYGF--FALS 315 GFIA + ++ + ++ ++++A +A + +++G+P + L+ Sbjct: 186 GFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLT 245 Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375 P L ++ ++ + + A S TA + I+ I ++ + Sbjct: 246 FDVPALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIV---------RAGIQAVSKGQ 296 Query: 376 RDGSLGLGATRSETMKYVIFPAA 398 + + LG S T++ VI P A Sbjct: 297 TEAARSLGLRSSLTLRLVIVPQA 319 >gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]. Length = 474 Score = 29.9 bits (67), Expect = 1.7 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 15/82 (18%) Query: 338 SFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPA 397 S E QSV T L G L + + DV+ +P S +LG A Sbjct: 266 SIFEGQSVYTVRLQCGEQL-ATEAPVDADVVIPVPDSGTTAALGY--------------A 310 Query: 398 AFPGIAGAILMTASRTIGETMI 419 A G+ ++ +R +G T I Sbjct: 311 AKSGLPYQEVLIRNRYVGRTFI 332 >gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length = 282 Score = 29.0 bits (65), Expect = 2.8 Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 357 IPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416 IP + L + +IP+SL + + GATR + + ++ P + P +A L+ G+ Sbjct: 155 IPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGD 214 Query: 417 TMI 419 ++ Sbjct: 215 FIL 217 >gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 1022 Score = 28.9 bits (64), Expect = 3.4 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 50 SIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQF-SYSILHKIVDSLSSLDP 108 S+ PY+F+F SP ++D + L S + + F S I H I +S L Sbjct: 577 SLRPYLFLFTDLLFESPAMLD---GTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 Query: 109 D-TKFKIQKGDGDISDLLRY-QNVISGYV 135 +I+ G L+++ Q + G V Sbjct: 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVV 662 >gnl|CDD|33888 COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 282 Score = 28.3 bits (63), Expect = 5.5 Identities = 39/230 (16%), Positives = 87/230 (37%), Gaps = 16/230 (6%) Query: 263 IGFIAMLFSVPIGLLIAIYMAEYA-PKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFL 321 I F + L + IG L+A + P +R+ + + + + F ++ +G Sbjct: 64 ISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLG-RN 122 Query: 322 RDISIYMNGLITGN-YKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSL 380 +++++ L N Y + S + IP + + + + R+ + Sbjct: 123 GLVTVFLKTLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAA 182 Query: 381 GLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTT 440 LGAT + + V P +P + G ++ + G G S+ Sbjct: 183 ILGATGWQYWRMVALPILWPSLLGTFVLLFANAFGAYATAYALTG----------SSLNI 232 Query: 441 ITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQR 490 + + + Q+ GD+ + +AL + IT N+ +++ K+ +R Sbjct: 233 VPILLYAQIRGDV---LHNPNLGYALAFGMIVITGVANLLYIWLRKRSER 279 >gnl|CDD|29357 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.. Length = 254 Score = 27.9 bits (62), Expect = 7.5 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 9/58 (15%) Query: 90 QFS----YSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEA 143 QFS Y V S L+ + +G + LL Y V++GY+ S +EA Sbjct: 37 QFSNHTGYGTWTGFVLSAEELE-----DLLEGLEALGLLLEYDAVLTGYLGSAEQVEA 89 >gnl|CDD|39130 KOG3927, KOG3927, KOG3927, Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]. Length = 300 Score = 27.2 bits (60), Expect = 9.6 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 43 GVYVALYSIIPYIFIFLLWFLF---SPYIIDFQVS 74 Y+ Y ++ +F +WF+ P + ++ S Sbjct: 49 LFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYKDS 83 >gnl|CDD|36465 KOG1251, KOG1251, KOG1251, Serine racemase [Signal transduction mechanisms, Amino acid transport and metabolism]. Length = 323 Score = 27.2 bits (60), Expect = 9.7 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 352 MGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS 411 +G + P + L +D+++ +++ L L R MK V+ P A G A + Sbjct: 241 LGPLTWPIIRDLVDDILTVSEDEIKEA-LKLIWER---MKVVVEPTAALGFAAVLSHK-F 295 Query: 412 RTIGETMIVVLAAG 425 + + ++L+ G Sbjct: 296 ALNIKRIGIILSGG 309 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.330 0.145 0.425 Gapped Lambda K H 0.267 0.0717 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,157,502 Number of extensions: 363587 Number of successful extensions: 2003 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1927 Number of HSP's successfully gapped: 261 Length of query: 493 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 395 Effective length of database: 4,146,055 Effective search space: 1637691725 Effective search space used: 1637691725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 59 (26.5 bits)