RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] (493 letters) >gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 295 Score = 257 bits (660), Expect = 3e-69 Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 13/305 (4%) Query: 188 EKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNV 247 EK LL S ++ +++ I++ L F +F G VWDP GS V Sbjct: 1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGILNFLTGTVWDP-----GSGPV 55 Query: 248 MGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTI 307 Q+G +PL++GT IA+L +VP+G+ IAI+++E APK++R+V+KP+ E+L GIP++ Sbjct: 56 QEQYGALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSV 115 Query: 308 VYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQ--SVLTAGLVMGIMLIPYVSSLSE 365 VYGF+ L ++ PFL+ G+ I +LTAG+V+ IM++P ++S+S Sbjct: 116 VYGFWGLFVLVPFLKPHF----QPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIASISR 171 Query: 366 DVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 D + ++PRS ++ S LGAT+ ET++ VI PAA GI GA+++ R +GETM V + G Sbjct: 172 DALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231 Query: 426 VAA-RLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYI 484 + F+ TTIT I NQ G+ S T FALGL LF IT +NI A YI Sbjct: 232 NVFPISPLSLFDPGTTITSLIANQF-GEASGGSVHTSALFALGLVLFVITLLVNILARYI 290 Query: 485 MKKYQ 489 +++ + Sbjct: 291 VRRRR 295 >gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 271 Score = 138 bits (351), Expect = 3e-33 Identities = 77/302 (25%), Positives = 145/302 (48%), Gaps = 34/302 (11%) Query: 188 EKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNV 247 +K F+ S LL++ I+I + + FF + Sbjct: 1 DKIFTFISLLSALLALGPLIWILIYILIKGLPALN----LGFFTKS----------PTPT 46 Query: 248 MGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPK-KLRAVIKPITEMLVGIPT 306 + G+ P ++GT + +A++ +VP+G+ AIY+AEYA + + VI+ ++L G+P+ Sbjct: 47 GAEGGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYANESRFTKVIRFAVDILAGVPS 106 Query: 307 IVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366 IV G F ++ ++ G + S+L L + ++++P + +E+ Sbjct: 107 IVVGLFGYGF----------FVLTMLGGGF-------SLLAGALALALLILPVIIRTTEE 149 Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGV 426 + ++P+ LR+ S LGAT+ +T+ V+ PAA PGI I+++ +R GET ++ AG Sbjct: 150 ALKAVPKDLREASYALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGG 209 Query: 427 AARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMK 486 +A N F+ T+ V I N + S +A+A L L + LN+ A + + Sbjct: 210 SAFTPPNLFDPFATLPVLIYNLASEGP--YSEAQQLAWAAALVLILLVLLLNLIARLLRR 267 Query: 487 KY 488 ++ Sbjct: 268 RF 269 >gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional. Length = 319 Score = 97.5 bits (243), Expect = 6e-21 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 22/297 (7%) Query: 191 IVF--LLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVM 248 I+F L++ + L+++++ GII+SL S S F +W + A Sbjct: 17 IIFSALVKLAALITLLLLGGIIVSLI-----ISSWPSIQKFGLSFLWTKEWDA-----PN 66 Query: 249 GQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV 308 +G + + GT FIA+L +VP+ IA+++ E AP L+ + E+L IP+IV Sbjct: 67 DIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIV 126 Query: 309 YGFFALSLVGP-----FLRDISIYMNGL-ITGN-YKSFIEAQSVLTAGLVMGIMLIPYVS 361 YG + L + P F + ++ + I G + +L AG+++ IM+IPY++ Sbjct: 127 YGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIA 186 Query: 362 SLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVV 421 ++ DV P +++ + G+G T E + ++ P G+ G +++ R +GETM V Sbjct: 187 AVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVT 246 Query: 422 LAAGVAARL-QFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFL 477 G +L + + +IT + N+ S T LGL LF ITF + Sbjct: 247 FIIGNTYQLDSASLYMPGNSITSALANEFAEAE--SGLHTAALMELGLILFVITFIV 301 >gnl|CDD|152935 pfam12501, DUF3708, Phosphate ATP-binding cassette transporter. This domain family is found in bacteria, and is typically between 143 and 173 amino acids in length. The family is found in association with pfam00528. There is a single completely conserved residue P that may be functionally important. Length = 127 Score = 86.1 bits (214), Expect = 2e-17 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 45/168 (26%) Query: 7 FSIIFLGLVSYFLGCLRARFLSKKNAI--RLYSKESYYGVYVALYSIIPYIFIFLLWFLF 64 ++ L + +FLG RA L++ L+S +YYG YVAL++ +P + + LW LF Sbjct: 3 LLLLLLSAIGFFLGRRRALALARGGGDSRALHSLPNYYGAYVALWAALPALLLLALWLLF 62 Query: 65 SPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDL 124 P +I+ V S + +L +R S + Sbjct: 63 EPILIEQLVLASLPAEVQALEGSERSLVLSDVR--------------------------- 95 Query: 125 LRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSY 172 + AA LS SR++M V + L + G +Y Sbjct: 96 ----------------LAAAQQYRALSSTSRLIMTVLVLLLALAGFAY 127 >gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional. Length = 295 Score = 60.9 bits (148), Expect = 8e-10 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%) Query: 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRA-VIKPITEMLVGIPTIVYG 310 GL + G+ + A + P+G++ IY+AEY K A VI+ I ++L+ P+IV G Sbjct: 78 GLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVG 137 Query: 311 FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISS 370 F ++V + F S + + ++ IP V +E+++ Sbjct: 138 LFVYTIV---------------VAQMEHF----SGWAGVIALALLQIPIVIRTTENMLKL 178 Query: 371 IPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGET 417 +P SLR+ + LG + + + + A+ GI +L+ +R GET Sbjct: 179 VPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGET 225 >gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. Length = 208 Score = 58.8 bits (143), Expect = 3e-09 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 31/227 (13%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTI----VYGFFALS 315 + + IA L +P+G+ +A ++A + R KP+ E+LV +P + V GF+ L Sbjct: 3 SLKVAVIATLLLLPLGIPVAWWLA-----RSRFRGKPLLEVLVTLPLVLPPTVLGFYLLI 57 Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLT-AGLVMG--IMLIPYVSSLSEDVISSIP 372 GP NG I G V T AG V+ I+ P + ++ Sbjct: 58 AFGP---------NGPI-GKLLELFGISLVFTFAGAVLASVIVSFPLMVQPIRAAFEAVD 107 Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG-VAARLQ 431 L + + LGA+ +T V P AFPG+ +++ +R +GE ++ AG + Q Sbjct: 108 PDLEEAARTLGASEIQTFLKVTLPLAFPGLLAGCVLSFARALGEFGATLMFAGNIPGETQ 167 Query: 432 FNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLN 478 TI + I + + D + + +LV A L + + LN Sbjct: 168 --------TIPLAIYDAVESDYELAHQLSLVLLAFSLIVLLLVELLN 206 >gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. Length = 265 Score = 49.2 bits (118), Expect = 2e-06 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 31/227 (13%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYA-PKKLRAVIKPITEMLVGIPTIVYGFFALSLVG 318 +F IA L + G L+A + Y P K ++ + ++ +PT V G +L Sbjct: 55 SFGTALIAALINAVFGTLLAWVLVRYRFPGK--RIVDALVDLPFALPTAVAGIALATLYS 112 Query: 319 PFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML------IPYVSSLSEDVISSIP 372 P NG I SF+ + A +GI++ +P+V + V+ I Sbjct: 113 P---------NGWI----GSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIE 159 Query: 373 RSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQF 432 + L + + LGA+R +T VI PA P + + +R +GE V+ AG Sbjct: 160 KELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNL----- 214 Query: 433 NPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNI 479 P ++ + I +L D++ T +A + + F I F+N+ Sbjct: 215 -PMKTEIA-PLLIFQKLE-QYDYAG-ATAIASVMLIISFVILLFINL 257 >gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein. This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. Length = 271 Score = 42.3 bits (100), Expect = 3e-04 Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 20/172 (11%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL--- 316 T + IA+ + GLLIA + Y R ++ + ++ + +V G L Sbjct: 65 TLLMALIAVPLNGVFGLLIAWVLTRYQFPG-RKLLDALIDLPFALSPVVAGLTLALLYGS 123 Query: 317 ---VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPR 373 +G +L I + + L M + +P+V + V+ + Sbjct: 124 NGWLGSWLASFGIQI-------------IFTWPGMALAMIFVSLPFVVREVQPVLEELGT 170 Query: 374 SLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 + + LGA+ +T V P+ + +++T +R +GE VV+ +G Sbjct: 171 EAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSG 222 >gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein. Length = 267 Score = 41.6 bits (98), Expect = 5e-04 Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 51/173 (29%) Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324 + M+ VP+G+ A L A+++P+ +++ +PT VY AL L G Sbjct: 100 VVCMVIGVPLGIAAA------HRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFG------ 147 Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMG-----IMLIPYVSSLSEDVISSIPRSLRDGS 379 G+V G I IP L+ ISS+P+ L + Sbjct: 148 -----------------------LGMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAG 184 Query: 380 LGLGATRSETMKYVIFPAAFP----GIAGAILMTASRTIGETMIVVLAAGVAA 428 GAT S+ + V P A P G+ I+++ S +VV+AA V A Sbjct: 185 EAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLS-------MVVIAALVGA 230 >gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity. Length = 225 Score = 40.1 bits (94), Expect = 0.001 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 18/179 (10%) Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309 L L + +A++ +P ++A L+ ++ + ++ + +P +V Sbjct: 20 IKALRLSLATSLASLLLAVIIGIPTAYVLA-----RVRFPLKKLLDTLLDLPMVLPPLVA 74 Query: 310 GFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLT-AGLVMGIMLI--PYVSSLSED 366 G L L G NGL+ G Y Q + + G+V+ + PY ++ Sbjct: 75 GLALLLLFG---------RNGLL-GPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARS 124 Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 S+ D + LGA ET + + P A PG+ +++ +R +GE ++ AG Sbjct: 125 TFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFAG 183 >gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional. Length = 217 Score = 38.6 bits (90), Expect = 0.004 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 20/155 (12%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAE--YAPKKLRAVIKPITEMLVGIPTIVYGFFAL 314 L TF GF + +P+G+L+ + A KL + + + IP I+ L Sbjct: 17 LAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIIL----L 72 Query: 315 SLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRS 374 + PF R +I G A LT G P+++ + E+ + IP Sbjct: 73 VWMIPFTR--------VIVGTSIGLQAAIVPLTVGA------APFIARMVENALLEIPTG 118 Query: 375 LRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409 L + S +GAT + ++ V+ P A PG+ A +T Sbjct: 119 LIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153 >gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed. Length = 219 Score = 35.8 bits (83), Expect = 0.027 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 27/153 (17%) Query: 254 IPLLIG----TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV- 308 IPLL+ T +I + + + IGLL A Y + E++ G P +V Sbjct: 12 IPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARA-YGGWIANHIALVFIELIRGTPIVVQ 70 Query: 309 --YGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366 + +FAL + LR I+ + ++ I Y++ ++ Sbjct: 71 VMFIYFALPMAFNDLR-----------------IDPFTAAVVTIM--INSGAYIAEITRG 111 Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAF 399 + SI + R+ L LG +R ET++YVI P A Sbjct: 112 AVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144 >gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein; Reviewed. Length = 229 Score = 34.5 bits (80), Expect = 0.064 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 263 IGFIAMLFSVPIGLLIAIYMAEYA-PKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFL 321 + +A+LFS+P G+L+A +A P K +++ + + + +P +V G+ L +G Sbjct: 17 VSSVAVLFSLPFGILVAWLLARCRFPGK--SLLDSLLHLPLVLPPVVTGYLLLISMGR-- 72 Query: 322 RDISIYMNGLITG---NYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDG 378 G I + A S A L +M P + + ++ R L Sbjct: 73 -------RGFIGQWLYEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQA 125 Query: 379 SLGLGATRSETMKYVIFPAAFPGI-AGAILMTASRTIGE 416 + LGA+ + P PGI AG +L A R++GE Sbjct: 126 ARTLGASPWRVFFTITLPLTLPGIIAGTVLAFA-RSLGE 163 >gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional. Length = 277 Score = 34.3 bits (79), Expect = 0.077 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 20/172 (11%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 T F+A +F+ GLL+A + Y R ++ + ++ +PT V G L+L Sbjct: 63 TLLSAFVASIFNAVFGLLMAWILTRYRFPG-RTLLDALMDLPFALPTAVAG---LTLASL 118 Query: 320 FLRDISIYMNGLITGNYKSFIEAQSV------LTAGLVMGIMLIPYVSSLSEDVISSIPR 373 F + G Y ++ + L + M IP+V + V+ + Sbjct: 119 FS----------VNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGP 168 Query: 374 SLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425 + + LGATR ++ + V+ P P + + ++ +R++GE V+ AG Sbjct: 169 EYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220 >gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Length = 212 Score = 32.1 bits (73), Expect = 0.30 Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 43/239 (17%) Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMA---EYAPKKLRAVIKPITEMLVGIPTIVY 309 ++P LI I +A I ++ + A AP + + E + G P +V Sbjct: 9 ILPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQ 68 Query: 310 GFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVIS 369 +F + L DI I + L+ G L +G+ Y + + I Sbjct: 69 LYFLYYV----LPDIGIRLPALVAG--------------VLGLGLHYATYAAEVYRAGIE 110 Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAAR 429 ++PR + + L T +T +++I P A P +I L + A Sbjct: 111 AVPRGQWEAATALNLTARQTYRHIILPQAIP----------------PIIPALGNYLVAM 154 Query: 430 LQFNPFESMTTITVKIMNQL----TGDLDFSSPQTLVA-FALGLTLFCITFFLNIYAMY 483 + P S T+ +++MNQ + P TLV F L L++ + F + A Sbjct: 155 FKETPVLSAITV-LELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212 >gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 272 Score = 31.9 bits (72), Expect = 0.44 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 19/162 (11%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKK--LRAVIKPITEMLVGIPTIVYGFFAL 314 L + IGF A F++ GL A+ +A K+ + A++ + + IP++ G L Sbjct: 70 LAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAIL 129 Query: 315 SLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRS 374 + G + N I VL A + ++ + + ++ Sbjct: 130 I----------AFHAGPLDLNGSLAI----VLFAHFAL---ILAFCFRCAAAALAPELAD 172 Query: 375 LRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416 + + + LGA + +++V+ P P I A+ + + ++GE Sbjct: 173 IEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGE 214 >gnl|CDD|180249 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated. Length = 646 Score = 31.1 bits (71), Expect = 0.72 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 26/202 (12%) Query: 173 AILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFG 232 +L +++ + L+ L I II L +F F + Sbjct: 375 GLLLSFKLKKKSEGLKRLLKILI----YLGI---STIIWGLLTGSF-FGFSLPIFLPGGY 426 Query: 233 IVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRA 292 + +P+L + N ++ +LI + IG I + GLL+ A Sbjct: 427 LELPEGYPSLSTEN-----DVMTILIISLLIGVIHLFL----GLLLGFINNVRKGDYKDA 477 Query: 293 VIKPI--TEMLVGIPTIVYGFFALSLVGPFLRDISIYM--NGLITGNYKSFIEAQSVLTA 348 + + +L+GI IV G F L + L I Y+ G++ I+ +S+ A Sbjct: 478 FLAQLGWLLILLGILLIVLGGFGLVVGLGPLGLIGKYLIIGGVVLIILGEGIDGKSLGGA 537 Query: 349 GLVMGIMLIP-YVSSLSEDVIS 369 +G+ I Y+ DV+S Sbjct: 538 LGGLGLYEITGYLG----DVLS 555 >gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional. Length = 224 Score = 30.6 bits (69), Expect = 1.0 Identities = 16/41 (39%), Positives = 21/41 (51%) Query: 359 YVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAF 399 Y S + I SI R +L LG T ++MK +I P AF Sbjct: 111 YYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAF 151 >gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). Length = 312 Score = 30.4 bits (68), Expect = 1.1 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 358 PYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGET 417 P+V + I + L + + LGA VIFPAA P IA ++ T+ E Sbjct: 193 PFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLLTLNEF 252 Query: 418 MIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCI 473 I++ AA L P + + I DL ++ L+ AL L LF + Sbjct: 253 GILLFIG--AAGLITLPMAIYSKAILDI------DLPAAAAGALIMIALSLALFAL 300 >gnl|CDD|162323 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717. Length = 750 Score = 30.4 bits (69), Expect = 1.1 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 61 WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLS-SLDPDTKFKIQKGDG 119 W L +DF SN FS Y + L D + + + LD DT F + +G+ Sbjct: 41 WKLQKEAGVDFIPSNDFSLYDHVL---DTAVMLGAIPERFGNYGGDLDLDTYFAMARGNK 97 Query: 120 DISDL 124 D+ L Sbjct: 98 DVPAL 102 >gnl|CDD|179176 PRK00943, PRK00943, selenophosphate synthetase; Provisional. Length = 347 Score = 29.8 bits (68), Expect = 1.9 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 222 SIISATDFFFGIVWDPR 238 IIS TDFF IV DP Sbjct: 62 GIISTTDFFMPIVDDPF 78 >gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. Length = 99 Score = 29.4 bits (67), Expect = 2.1 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV---YGFFALSL 316 T + +++L + +GLL+A+ + + LR + E+ G P +V + +F L L Sbjct: 12 TLLLSVLSILLGLVLGLLLAL-LRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPL 70 Query: 317 VG 318 +G Sbjct: 71 IG 72 >gnl|CDD|162646 TIGR01992, PTS-IIBC-Tre, PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters. Length = 462 Score = 29.3 bits (66), Expect = 2.2 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 274 IGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT--IVYGFFALSLVGPFLRDISIYM-NG 330 + L+A Y+ K LR + ++LV P +V GF A +++GP R I + +G Sbjct: 234 LPALLAGYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSG 293 Query: 331 LITG 334 + Sbjct: 294 VTAL 297 >gnl|CDD|182245 PRK10110, PRK10110, bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional. Length = 530 Score = 28.9 bits (65), Expect = 3.3 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 200 LLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGL-IPLLI 258 +L VI+ GII+ + F + A FF G RF + SS VMG GL IPL+ Sbjct: 148 ILGAVIA-GIIVWMLHERFHNIRLPDALAFFGGT----RFVPIISSLVMGLVGLVIPLVW 202 Query: 259 GTFYIGFIAM 268 F +G + Sbjct: 203 PIFAMGISGL 212 >gnl|CDD|162655 TIGR02004, PTS-IIBC-malX, PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. Length = 517 Score = 28.7 bits (64), Expect = 3.9 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 205 ISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGL-IPLLIGTFYI 263 + G+I+ N F + A FF G RF + S+ V+ GL IPL+ F + Sbjct: 143 VIVGLIVYKLHNRFYTVQMPDALAFFGGA----RFVPIISALVLAVVGLVIPLVWPLFAL 198 Query: 264 GFIAM 268 +A+ Sbjct: 199 MIMAI 203 >gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous. Length = 214 Score = 28.7 bits (64), Expect = 4.1 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 50/246 (20%) Query: 252 GLIPLLIG----TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTI 307 +PLL+ T I + + + + P LR V E+ G + Sbjct: 2 AYLPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPI-LRTVALCYIEVFRGTSLL 60 Query: 308 V---YGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLS 364 V + +F L L+G + V T +V+G+ Y + + Sbjct: 61 VQLFWFYFVLPLIG---------------------LSLDPVTTGVMVLGLHAGAYGAEIV 99 Query: 365 EDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAA 424 +SS+ + L TR +T++ + P A + A A + T +V L + Sbjct: 100 RGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLIS 159 Query: 425 GVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYI 484 + T + + LT D TL FA+ L + F + + M I Sbjct: 160 -----------LADLTFAAQSIRNLTLD-------TLSIFAITLLCY---FVMALIIMLI 198 Query: 485 MKKYQR 490 M+ +R Sbjct: 199 MRVLER 204 >gnl|CDD|131837 TIGR02790, nickel_nikC, nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. Length = 258 Score = 28.5 bits (64), Expect = 4.4 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 260 TFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGP 319 + + + + IGLLI +A Y ++ I + ++ + PTI+ + ++GP Sbjct: 64 SLGSALLVLGLVLTIGLLIGG-LAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGP 122 Query: 320 FLRDISIYM 328 L ++ I + Sbjct: 123 GLENVIIAI 131 >gnl|CDD|185373 PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta; Provisional. Length = 433 Score = 28.4 bits (63), Expect = 4.7 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Query: 220 FFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTF---YIGFIAMLFSVPIGL 276 F + + TDF ++ +PR LG++ QFG+ ++G Y G I+ F++P Sbjct: 141 FMGVGAMTDFG-PLLANPRTLLLGAA---AQFGIFATVLGALTLNYFGLIS--FTLPQAA 194 Query: 277 LIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFAL 314 I I P + K E+L I Y + AL Sbjct: 195 AIGIIGGADGPTAIYLSGKLAPELLGAIAVAAYSYMAL 232 >gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional. Length = 296 Score = 28.0 bits (63), Expect = 5.5 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 12/106 (11%) Query: 369 SSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAA 428 + + + + LGA+ + VI P A+P +A + T+ E I VL G A Sbjct: 185 AQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGI-VLFTG-AK 242 Query: 429 RLQFNPFESMTTITVKIMNQLTGDLDFSSPQTL--VAFALGLTLFC 472 + T+ V I ++ D D+ + + V AL L L+ Sbjct: 243 DVV--------TLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYA 280 >gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional. Length = 220 Score = 27.8 bits (62), Expect = 7.1 Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 340 IEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAA 398 IE + A + + + Y + ISSI + + + +G TR +T++ I P A Sbjct: 83 IELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQA 141 >gnl|CDD|149639 pfam08652, RAI1, RAI1 like. RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease. It is required for 5.8S rRNA processing. Length = 68 Score = 27.6 bits (62), Expect = 8.3 Identities = 8/11 (72%), Positives = 9/11 (81%) Query: 301 LVGIPTIVYGF 311 LVG+P IV GF Sbjct: 49 LVGVPRIVVGF 59 >gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed. Length = 300 Score = 27.1 bits (61), Expect = 9.8 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 290 LRAVIKPITEMLVGIPTIV 308 LR VI P+ L +P I+ Sbjct: 211 LRRVILPMEYALSHLPKII 229 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.145 0.425 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,232,867 Number of extensions: 570270 Number of successful extensions: 2166 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2117 Number of HSP's successfully gapped: 187 Length of query: 493 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 396 Effective length of database: 3,898,497 Effective search space: 1543804812 Effective search space used: 1543804812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 59 (26.5 bits)