RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane
spanning protein [Candidatus Liberibacter asiaticus str. psy62]
(493 letters)
>2onk_C Molybdate/tungstate ABC transporter, permease protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(C:69-249)
Length = 181
Score = 70.7 bits (173), Expect = 4e-13
Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 11/174 (6%)
Query: 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGF 311
+ +++ T+Y I+ L +V G +A +A ++V++ I ++ V IP V G
Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGI 59
Query: 312 FALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSI 371
L + G S + ++ + M + +P + +++ +S+
Sbjct: 60 ALLVVFGSSGLIGSFSPLKFVD----------ALPGIVVAMLFVSVPIYINQAKEGFASV 109
Query: 372 PRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
L + LG++ V P + I +M+ +R I E VV+ A
Sbjct: 110 DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAY 163
>2r6g_G Maltose transport system permease protein MALG; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (G:73-244)
Length = 172
Score = 69.5 bits (170), Expect = 9e-13
Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 15/176 (8%)
Query: 250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVY 309
F ++ L + + I+ + V + A A +A + + P ++
Sbjct: 6 PFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFP-GKATLLKGMLIFQMFPAVLS 64
Query: 310 GFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVIS 369
+L I + + + I +
Sbjct: 65 LVALYALFDRLGEYIPFIGL--------------NTHGGVIFAYLGGIALHVWTIKGYFE 110
Query: 370 SIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
+I SL + + GAT + + V+ P + P +A +++ I E + L
Sbjct: 111 TIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 166
>3d31_C Sulfate/molybdate ABC transporter, permease protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (C:)
Length = 295
Score = 67.5 bits (164), Expect = 3e-12
Identities = 45/296 (15%), Positives = 102/296 (34%), Gaps = 32/296 (10%)
Query: 196 RNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIP 255
R + + + L F F ++ + + A G+ +I
Sbjct: 29 RKTRKFEPLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNR------SVIS 82
Query: 256 LLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALS 315
+ + Y GF+A L ++ +G +A + + +++ I ++ V +P V G L+
Sbjct: 83 SIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLT 141
Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375
+ G + + + I + M + +PY+++ + + S+ L
Sbjct: 142 VFGSRGLIGEPLESYIQFRDALPGI--------VVAMLFVSMPYLANSAREGFKSVDPRL 193
Query: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPF 435
+ + LGA + +V P + + +MT +R I E VV+ A
Sbjct: 194 ENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAY---------- 243
Query: 436 ESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK 491
I ++ F S + + + L +T + + + +
Sbjct: 244 -YPMVGPTLIYDR------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGWSIY 292
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} (A:)
Length = 217
Score = 63.8 bits (155), Expect = 5e-11
Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 42/245 (17%)
Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAP------KKLRAVIKPITEMLVGIPT 306
L+ + T + F++ F IGL + + + P KL + I + IP
Sbjct: 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 68
Query: 307 IVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366
I+ + + + + A + + + P+++ + E+
Sbjct: 69 IILLVWMIPFTRVIVGTSI------------------GLQAAIVPLTVGAAPFIARMVEN 110
Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGV 426
+ IP L + S +GAT + ++ V+ P A PG+ A +T +G + +
Sbjct: 111 ALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA---- 166
Query: 427 AARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMK 486
+ + Q+ + V + + L + + + I++
Sbjct: 167 --------------VGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVR 212
Query: 487 KYQRK 491
RK
Sbjct: 213 AVTRK 217
>2r6g_F Maltose transport system permease protein MALF; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (F:269-326,F:360-453)
Length = 152
Score = 47.5 bits (113), Expect = 3e-06
Identities = 21/179 (11%), Positives = 54/179 (30%), Gaps = 33/179 (18%)
Query: 247 VMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPT 306
Q + + + T I + +V +G+++A + + +AV + + +
Sbjct: 3 EGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE-ALRGKAVYRVLLILPYAAWF 61
Query: 307 IVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366
L+ +V + PY+ L
Sbjct: 62 SDPTTARTMLI--------------------------------IVNTWLGYPYMMILCMG 89
Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
++ +IP L + S GA + + P + ++ + + +++ L
Sbjct: 90 LLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTN 148
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCSG, protein structure initiative,
PSI; 2.61A {Thermotoga maritima MSB8} (A:324-388)
Length = 65
Score = 29.6 bits (67), Expect = 0.93
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 398 AFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNP 434
AFPGI + S+ ++ +A + P
Sbjct: 6 AFPGIXKGAVEKRSKITKNXLLSA-VEAIARSCEPEP 41
>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B;
acetyltransferase, structural genomics, structural
genomics consortium, SGC; 2.28A {Homo sapiens} (A:)
Length = 291
Score = 28.9 bits (63), Expect = 1.4
Identities = 7/96 (7%), Positives = 24/96 (25%), Gaps = 3/96 (3%)
Query: 397 AAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLT---GDL 453
+ + L+ + ++V G + + +++ ++
Sbjct: 4 SHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA 63
Query: 454 DFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ 489
+ ++ A G C F +
Sbjct: 64 AADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNT 99
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
(A:165-186,A:319-398)
Length = 102
Score = 27.9 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 398 AFPGIAGAILMTASRTIGETMIVVLAAGVA 427
AFPGI L ++TI M + A G+A
Sbjct: 28 AFPGIFRGALDARAKTITVEMQIAAAKGIA 57
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase;
NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
(A:163-184,A:326-439)
Length = 136
Score = 28.0 bits (62), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 398 AFPGIAGAILMTASRTIGETMIVVLAAGVA 427
FPGI L +RTI ++MI+ A +A
Sbjct: 28 GFPGIFRGALDVRARTITDSMIIAAAKAIA 57
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20/M25/M40, structural
genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
(A:1-165,A:311-356)
Length = 211
Score = 27.6 bits (61), Expect = 4.1
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 275 GLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYG 310
G + P A++ TE L ++ G
Sbjct: 141 GKEGIESVLPGLPPVSFAIVGEPTEALXSFASVKIG 176
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (g:)
Length = 204
Score = 26.9 bits (59), Expect = 5.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 27 LSKKNAIRLYSKESYYGVYVALYSIIPYIFI 57
+++ I+L+ K S V + S+ YI +
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAV 41
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} (A:216-309)
Length = 94
Score = 26.3 bits (58), Expect = 9.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 96 LHKIVDSLSSLDPDTKFKIQKGDGDISDLL-RYQNVISGYVPSPWI 140
L K + +DP KI++ +G+I +L+ + +I+ S I
Sbjct: 48 LKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLI 93
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.330 0.145 0.425
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,612,808
Number of extensions: 162859
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 45
Length of query: 493
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 401
Effective length of database: 1,845,989
Effective search space: 740241589
Effective search space used: 740241589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.7 bits)