RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus
Liberibacter asiaticus str. psy62]
(219 letters)
>gnl|CDD|144566 pfam01025, GrpE, GrpE.
Length = 162
Score = 163 bits (416), Expect = 3e-41
Identities = 70/165 (42%), Positives = 114/165 (69%), Gaps = 9/165 (5%)
Query: 23 TAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLS 82
EE++ EE + EE +D+ LR++AE EN R+RT+RE+++A+ Y+I KFA+D+L
Sbjct: 7 EDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEKFAKDLLP 66
Query: 83 VSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKF 142
V DNL RAL +A K +KSL+EG+EM ++++ LE++GV+KI+ + + F
Sbjct: 67 VLDNLERALAAA---------KENEDVKSLVEGVEMILKQLLKVLEKHGVEKIEPEGEPF 117
Query: 143 NPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
+PN+H+A+ + P D P T+++V+Q GY +++RVLRPA+V +SK
Sbjct: 118 DPNLHEAVSQVPSDEKPPGTVVEVLQKGYKLHDRVLRPAMVVVSK 162
>gnl|CDD|73207 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of
ADP, which enables rebinding of ATP, one step in the
Hsp70 reaction cycle in protein folding. In eukaryotes,
only the mitochondrial Hsp70, not the cytosolic form, is
GrpE dependent..
Length = 137
Score = 154 bits (391), Expect = 1e-38
Identities = 65/145 (44%), Positives = 104/145 (71%), Gaps = 9/145 (6%)
Query: 41 EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLAN 100
EE +DK LR +AE EN R+RT+RE+++A+ Y+I KFA+D+L V DNL RAL++A
Sbjct: 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAK----- 56
Query: 101 SEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPA 160
E LK+L+EG+EMT ++++ LE++GV+KI+ + + F+PN+H+A+ + P V
Sbjct: 57 ----KEEELKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEP 112
Query: 161 NTIIKVVQDGYAINERVLRPALVSI 185
T+++V+Q GY + +RVLRPA+V +
Sbjct: 113 GTVVEVLQKGYKLGDRVLRPAMVVV 137
>gnl|CDD|30921 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 136 bits (344), Expect = 4e-33
Identities = 74/185 (40%), Positives = 117/185 (63%), Gaps = 12/185 (6%)
Query: 5 MSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDRE 64
SE+ +E+ P N E+ E Q EE +DKYLR AE ENLR+RT+RE
Sbjct: 21 KSEEEEAEEEEPEEENELEEEQ----QEIAELEAQLEELKDKYLRAQAEFENLRKRTERE 76
Query: 65 KKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMM 124
+++A+ Y+I KFA+D+L V DNL RAL + + + K+L+EG+EMT +++
Sbjct: 77 REEAKKYAIEKFAKDLLPVIDNLERAL--------EAAEDDKDPEKALLEGVEMTLDQLL 128
Query: 125 STLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVS 184
LE+ GV++I + +KF+PN+H+A+ + V NT+++V+Q GY +N+RVLRPA+V
Sbjct: 129 DALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVK 188
Query: 185 ISKGK 189
++K +
Sbjct: 189 VAKKE 193
>gnl|CDD|38213 KOG3003, KOG3003, KOG3003, Molecular chaperone of the GrpE family
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 114 bits (286), Expect = 2e-26
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 2/183 (1%)
Query: 6 SEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREK 65
++ + E P + + EK+ + + + +E +DKYLR +AE ENLR RT R+
Sbjct: 52 YGEDCESELAPDDKLGPSLAEKALLEKVLKLEKEEQELKDKYLRSLAECENLRDRTIRDV 111
Query: 66 KDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMS 125
+DA+ ++I F +D+L V+DNL +A + + ++K + LK L EG+ MT ++
Sbjct: 112 EDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQKKD--LKDLFEGLSMTEAQLKE 169
Query: 126 TLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSI 185
++G++K+D +KF+PN H+A+F+ P T+ V + GY +N RV+RPA+V +
Sbjct: 170 VFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPAMVGV 229
Query: 186 SKG 188
KG
Sbjct: 230 VKG 232
>gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin
subunit beta [Extracellular structures].
Length = 1758
Score = 28.9 bits (64), Expect = 1.2
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 7 EKNIDKEKNPSNANSSTAEEKSEI--NIPEESLNQSEEFR--DKYLRVIAEM-------- 54
E +++ K+ + NS+ A++ + + E++L+ + KY ++ +
Sbjct: 1625 ETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS 1684
Query: 55 ENLRRRTDREKKDA-----QSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVL 109
+ R R ++ + +A Q+ +D+ +AL+ +LA EK+ ESVL
Sbjct: 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744
Query: 110 KSL 112
+
Sbjct: 1745 DHI 1747
>gnl|CDD|36110 KOG0892, KOG0892, KOG0892, Protein kinase ATM/Tel1, involved in
telomere length regulation and DNA repair [Signal
transduction mechanisms, Chromatin structure and
dynamics, Replication, recombination and repair, Cell
cycle control, cell division, chromosome partitioning].
Length = 2806
Score = 28.5 bits (63), Expect = 1.7
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 6 SEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLR 49
S E+ + + ++ + EE L E R K+L
Sbjct: 2196 STVEASNEREEQMRKNHHVRVQRQLILDEEELLALSEDRSKFLT 2239
>gnl|CDD|111811 pfam02963, EcoRI, Restriction endonuclease EcoRI.
Length = 257
Score = 28.0 bits (62), Expect = 2.0
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 105 SESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTII 164
S+ V K L E ++++ K+I+ +K +P++ Q +F E P I+
Sbjct: 23 SKLVKKKLSEDYPQLSFRYRDSIKK---KEINEALKKIDPDLGQTLFVENASIKPDGGIV 79
Query: 165 KVVQD 169
+V D
Sbjct: 80 EVKDD 84
>gnl|CDD|37173 KOG1962, KOG1962, KOG1962, B-cell receptor-associated protein and
related proteins [Defense mechanisms].
Length = 216
Score = 27.6 bits (61), Expect = 2.8
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 2 ETFMSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRT 61
E + D EK + + + + QSE +D+Y R++ E L+ +
Sbjct: 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209
Query: 62 DREKK 66
+ K
Sbjct: 210 ESGGK 214
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 27.1 bits (60), Expect = 3.7
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 51 IAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLK 110
+ E+ + + +SYS A+F RD L+ D++ P+ + LK
Sbjct: 52 LEELAGVPHHLIDIRDPTESYSAAEFQRDALAAIDDILAR-GKLPI----LVGGTGLYLK 106
Query: 111 SLIEGI-------EMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDT 157
+L+EG+ RR + + L G + A+ +K +P + P+D
Sbjct: 107 ALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKI--HPNDP 158
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 27.0 bits (60), Expect = 3.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 81 LSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTL 127
L+V +N+ L+ L E+K E +L+ I R+ S+L
Sbjct: 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEF--HITHLRKSKASSL 134
>gnl|CDD|34627 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 26.9 bits (59), Expect = 4.2
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 15/211 (7%)
Query: 7 EKNIDKEKNPSNANSSTAEEKSEINIPE--ESLNQSEEFRDK-----YLRVIAEMENLRR 59
+K I +EK K+E+ I + SL + F YL+ +E R
Sbjct: 823 QKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAER 882
Query: 60 RTDREKKDAQSYSIAKFARDML-SVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEM 118
+ K D +S S K L S L ++L S ++ + + + LK L+ I++
Sbjct: 883 QLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDL 942
Query: 119 TRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVL 178
Y K + + + EE D + +TI+ + +
Sbjct: 943 E----EGPSIEYVKLPELNKLHEVESKLKETS-EEYEDLLKKSTILVREGNKANSELKNF 997
Query: 179 RPALVSISKGKT--QNPTEEKKETIEQPSPL 207
+ L +SK Q T++ KE + + L
Sbjct: 998 KKELAELSKQYGALQESTKQLKELPVEVAEL 1028
>gnl|CDD|36189 KOG0971, KOG0971, KOG0971, Microtubule-associated protein dynactin
DCTN1/Glued [Cell cycle control, cell division,
chromosome partitioning, Cytoskeleton].
Length = 1243
Score = 26.6 bits (58), Expect = 5.1
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 37 LNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPL 96
L Q +EF+ K + A+++ +R +E K+AQ ++ +M +D ++ A L
Sbjct: 264 LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK-ERYKEEMADTADA----IEMATL 318
Query: 97 DLANSEKKSESV 108
D +E+++ES+
Sbjct: 319 DKEMAEERAESL 330
>gnl|CDD|114310 pfam05580, Peptidase_S55, SpoIVB peptidase S55. The protein SpoIVB
plays a key role in signalling in the final sigma-K
checkpoint of Bacillus subtilis.
Length = 219
Score = 26.2 bits (58), Expect = 6.3
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 166 VVQDGYAINERVLRPALVSISKGKTQNPTEEKKETIEQPSPLDIEERN 213
+++G I + SI KG NP E K + P+ N
Sbjct: 52 SIKNGEIIKSSI-----TSIDKGSNGNPGELKGIFSNERKPIGNISNN 94
>gnl|CDD|36479 KOG1265, KOG1265, KOG1265, Phospholipase C [Lipid transport and
metabolism].
Length = 1189
Score = 25.7 bits (56), Expect = 9.1
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 13 EKNPSNANSSTAEEKSEIN-IPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSY 71
+ P+ A+ A E E++ IP E L + + F R E+ +LR++ +E+ Q
Sbjct: 913 IRAPTTADQPVAVEAFEVDPIPLEELREHKSFVKLLKRHEKELRDLRKKHQKERDTLQKQ 972
Query: 72 SIAKFAR 78
+ +
Sbjct: 973 HQTQVDK 979
>gnl|CDD|31474 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 25.9 bits (57), Expect = 10.0
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 34 EESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDS 93
E+++++ E YL +++ E L ++ E + I A ++ + D + R L+
Sbjct: 372 EDAVDRLYEEIKLYLARLSK-EGL---SEEESRRWAE--IIDAAINLEHIGDIIERLLEL 425
Query: 94 APLDLANSEKKSESVLKSLIEGIEMT 119
A +AN SE L+ L +T
Sbjct: 426 ADKKIANGRAFSEDGLEELDALFALT 451
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.306 0.123 0.318
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,317,708
Number of extensions: 109785
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 43
Length of query: 219
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,318,927
Effective search space: 557141583
Effective search space used: 557141583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.1 bits)